Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CCNL2	81669	broad.mit.edu	37	1	1322837	1322837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:1322837G>A	uc001afi.2	-	11	1369	c.1337C>T	c.(1336-1338)TCC>TTC	p.S446F	CCNL2_uc010nym.1_RNA|CCNL2_uc001aff.1_Missense_Mutation_p.S224F|CCNL2_uc001afg.1_Missense_Mutation_p.S224F|CCNL2_uc001afh.2_3'UTR|CCNL2_uc001afj.2_3'UTR|CCNL2_uc001afk.2_3'UTR	NM_030937	NP_112199	Q96S94	CCNL2_HUMAN	cyclin L2 isoform A	446					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.03e-36)|OV - Ovarian serous cystadenocarcinoma(86;4.17e-22)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.0023)|BRCA - Breast invasive adenocarcinoma(365;0.00465)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.146)		GGACTTCCGGGAGCCCCGAAT	0.642													10	15					0	0	0.000673	0	0
CDK11A	728642	broad.mit.edu	37	1	1635549	1635549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:1635549G>A	uc009vks.2	-	16	1831	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	CDK11B_uc001ags.1_Intron|CDK11B_uc001agt.1_Intron|CDK11B_uc001aha.1_Intron|CDK11B_uc001agw.1_Intron|CDK11B_uc001agv.1_Intron|CDK11B_uc001agy.1_Intron|CDK11B_uc001agx.1_Intron|CDK11B_uc001agz.1_Intron|SLC35E2B_uc001ahh.3_Intron|SLC35E2_uc009vkm.1_Intron|CDK11A_uc001ahj.3_Missense_Mutation_p.P82S|CDK11A_uc009vkp.2_Missense_Mutation_p.P192S|CDK11A_uc009vkq.2_Intron|CDK11A_uc009vkr.2_Missense_Mutation_p.P565S	NM_024011	NP_076916	Q9UQ88	CD11A_HUMAN	cell division cycle 2-like 2 isoform 1	578	Protein kinase.				apoptosis|mitosis|regulation of cell growth|regulation of mRNA processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity|protein binding			stomach(1)	1						GCCTTCAGAGGGGATCCGTAC	0.682													8	7					0	0	0.003080	0	0
CHD5	26038	broad.mit.edu	37	1	6202331	6202331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:6202331C>T	uc001amb.1	-	15	2393	c.2293G>A	c.(2293-2295)GAA>AAA	p.E765K	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	765	Helicase ATP-binding.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		AACTCGCGTTCCCAGTTGATG	0.612													21	21					0	0	0.002780	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724050	7724050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:7724050G>A	uc001aoi.2	+	9	1650	c.1443G>A	c.(1441-1443)ATG>ATA	p.M481I		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	481					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		AAACCACCATGAACTTTGACC	0.592													34	28					0	0	0.003271	0	0
SLC2A5	6518	broad.mit.edu	37	1	9117614	9117614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:9117614C>T	uc001apo.2	-	3	478	c.186G>A	c.(184-186)ATG>ATA	p.M62I	SLC2A5_uc010nzz.1_Intron|SLC2A5_uc010oaa.1_Missense_Mutation_p.M18I|SLC2A5_uc010oab.1_Missense_Mutation_p.M62I|SLC2A5_uc010oac.1_Missense_Mutation_p.M62I|SLC2A5_uc001app.3_Missense_Mutation_p.M62I	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	62	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GGAAGTCTTCCATGAATTCAC	0.443													16	14					0	0	0.006122	0	0
C1orf200	644997	broad.mit.edu	37	1	9714409	9714409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:9714409G>A	uc001aqc.3	-	1	236	c.86C>T	c.(85-87)TCG>TTG	p.S29L	PIK3CD_uc001aqa.2_Intron|PIK3CD_uc001aqb.3_Intron	NR_027045				RecName: Full=Putative uncharacterized protein C1orf200;												0	all_lung(157;0.222)	Renal(390;0.000469)|all_lung(118;0.000521)|Lung NSC(185;0.000744)|Colorectal(325;0.0062)|Breast(348;0.0157)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.86e-08)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(185;0.000231)|KIRC - Kidney renal clear cell carcinoma(229;0.000879)|BRCA - Breast invasive adenocarcinoma(304;0.00178)|STAD - Stomach adenocarcinoma(132;0.00331)|READ - Rectum adenocarcinoma(331;0.0419)		TTTCTCCTCCGATACCATGTT	0.597													20	29					0	0	0.002299	0	0
C1orf127	148345	broad.mit.edu	37	1	11017675	11017675	+	Missense_Mutation	SNP	C	T	T	rs12567143		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:11017675C>T	uc010oao.1	-	3	249	c.244G>A	c.(244-246)GAG>AAG	p.E82K	C1orf127_uc001arr.1_Missense_Mutation_p.E82K|C1orf127_uc001ars.1_Missense_Mutation_p.E82K	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	82										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		CCACTGACCTCCCACCTCTGA	0.587													17	16					0	0	0.000958	0	0
PTCHD2	57540	broad.mit.edu	37	1	11579534	11579534	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:11579534C>T	uc001ash.3	+	8	2150	c.2012C>T	c.(2011-2013)CCC>CTC	p.P671L	PTCHD2_uc001asi.1_Missense_Mutation_p.P671L	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	671	Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GATGACATCCCCTTGCTGGAG	0.637													58	72					0	0	0.003610	0	0
PLOD1	5351	broad.mit.edu	37	1	12034862	12034862	+	Silent	SNP	C	T	T	rs140741046		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:12034862C>T	uc001atm.2	+	19	2272	c.2181C>T	c.(2179-2181)CCC>CCT	p.P727P	PLOD1_uc010obb.1_Silent_p.P774P	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	727	Fe2OG dioxygenase.				epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	TCGTCGATCCCTAATTGGCCA	0.632													27	19					0	0	0.002445	0	0
TNFRSF8	943	broad.mit.edu	37	1	12183377	12183377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:12183377C>T	uc001atq.2	+	9	1205	c.983C>T	c.(982-984)CCC>CTC	p.P328L	TNFRSF8_uc010obc.1_Missense_Mutation_p.P217L|TNFRSF8_uc001atr.2_5'Flank|TNFRSF8_uc001ats.2_5'Flank	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	328	Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		GAGGCGCCACCCCTGGGGACC	0.622													7	7					0	0	0.001984	0	0
VPS13D	55187	broad.mit.edu	37	1	12374283	12374283	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:12374283G>A	uc001atv.2	+	30	7188	c.7047G>A	c.(7045-7047)CAG>CAA	p.Q2349Q	VPS13D_uc001atw.2_Silent_p.Q2349Q|VPS13D_uc001atx.2_Silent_p.Q1537Q|VPS13D_uc001aty.1_Silent_p.Q87Q	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2349					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ATGCTGGGCAGAAGACCAGCC	0.458													31	11					0	0	0.002445	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12856118	12856118	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:12856118G>A	uc001auj.1	+	4	1501	c.1398G>A	c.(1396-1398)GAG>GAA	p.E466E		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	466											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACCGTCTGAGGAACTGGAGC	0.542													24	66					0	0	0.003271	0	0
FBLIM1	54751	broad.mit.edu	37	1	16101277	16101277	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:16101277G>A	uc001axd.1	+	8	1319	c.876G>A	c.(874-876)CTG>CTA	p.L292L	FBLIM1_uc001axe.1_Silent_p.L292L|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Silent_p.L292L|FBLIM1_uc001axh.1_Silent_p.L195L|FBLIM1_uc001axi.1_Silent_p.L195L	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	292	PLEKHC1-binding.|LIM zinc-binding 2.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		TGTACTGCCTGGACGACTTCT	0.622													50	49					0	0	0.003610	0	0
FBXO42	54455	broad.mit.edu	37	1	16632330	16632330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:16632330G>A	uc001ayg.2	-	3	551	c.335C>T	c.(334-336)CCT>CTT	p.P112L	FBXO42_uc001ayf.2_Missense_Mutation_p.P19L|FBXO42_uc001ayh.2_Missense_Mutation_p.P112L	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	112										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		TGGGGTTCCAGGATAAGGATA	0.473													5	71					0	0	0.001168	0	0
MST1P2	11209	broad.mit.edu	37	1	16975987	16975987	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:16975987C>T	uc010och.1	+	11		c.2009C>T			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						TGTGGGCCCTCAGGCTCTCAG	0.612													14	42					0	0	0.002450	0	0
ESPNP	284729	broad.mit.edu	37	1	17029371	17029371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:17029371G>A	uc001azn.1	-	6	995	c.881C>T	c.(880-882)CCC>CTC	p.P294L		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						gggtggtgggggtatgggCTT	0.358													6	2					0	0	0.001168	0	0
PADI2	11240	broad.mit.edu	37	1	17395573	17395573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:17395573G>A	uc001baf.2	-	16	2046	c.1964C>T	c.(1963-1965)CCC>CTC	p.P655L	PADI2_uc010ocm.1_Missense_Mutation_p.P539L	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	655					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	GAAGGTGAAGGGCTTCCTGCG	0.602													6	65					0	0	0.001984	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809590	18809590	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:18809590C>T	uc001bax.2	+	1	2167	c.2115C>T	c.(2113-2115)TGC>TGT	p.C705C	KLHDC7A_uc009vpg.2_Silent_p.C487C	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	705						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGTACGAGTGCGCCACGTACC	0.652													19	18					0	0	0.000958	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20466686	20466686	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:20466686C>T	uc009vpp.1	+	2	242	c.144C>T	c.(142-144)TTC>TTT	p.F48F		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	5					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		AGAAGTTCTTCACCGTGGCCA	0.597													30	25					0	0	0.002445	0	0
EIF4G3	8672	broad.mit.edu	37	1	21186888	21186888	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:21186888C>T	uc001bec.2	-	19	3322	c.3066G>A	c.(3064-3066)AAG>AAA	p.K1022K	EIF4G3_uc010odi.1_Silent_p.K626K|EIF4G3_uc010odj.1_Silent_p.K1021K|EIF4G3_uc009vpz.2_Silent_p.K742K|EIF4G3_uc001bed.2_Silent_p.K1022K|EIF4G3_uc001bef.2_Silent_p.K1058K|EIF4G3_uc001bee.2_Silent_p.K1028K	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	1022	Potential.				interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		CTGGTCTTCTCTTCTCTTTGG	0.398													69	65					0	0	0.003610	0	0
HSPG2	3339	broad.mit.edu	37	1	22173852	22173852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:22173852G>A	uc001bfj.2	-	62	8199	c.8159C>T	c.(8158-8160)CCC>CTC	p.P2720L	HSPG2_uc009vqd.2_Missense_Mutation_p.P2721L	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2720	Ig-like C2-type 12.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CTCACCGGAGGGGCTGCCGGC	0.607													23	19					0	0	0.001271	0	0
MYOM3	127294	broad.mit.edu	37	1	24383922	24383922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:24383922C>T	uc001bin.3	-	37	4409	c.4246G>A	c.(4246-4248)GAG>AAG	p.E1416K	MYOM3_uc001bil.3_Missense_Mutation_p.E309K|MYOM3_uc001bim.3_Missense_Mutation_p.E1073K	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1416	Ig-like C2-type 4.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TGGCCCGTCTCGGAGCCATAC	0.567													16	20					0	0	0.006122	0	0
MAP3K6	9064	broad.mit.edu	37	1	27684357	27684357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:27684357C>T	uc001bny.1	-	22	3175	c.2926G>A	c.(2926-2928)GAG>AAG	p.E976K	MAP3K6_uc009vsw.1_Missense_Mutation_p.E968K	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	976					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GCCGCAGGCTCCTCGGGCACC	0.652											OREG0013282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	7					0	0	0.000602	0	0
AHDC1	27245	broad.mit.edu	37	1	27876003	27876003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:27876003G>A	uc009vsy.2	-	6	3593	c.2624C>T	c.(2623-2625)CCC>CTC	p.P875L	AHDC1_uc009vsz.1_Missense_Mutation_p.P875L	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	875							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GGCACTGGTGGGTGGCCCTGC	0.687													22	16					0	0	0.002299	0	0
PTAFR	5724	broad.mit.edu	37	1	28476528	28476528	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:28476528G>A	uc001bpl.2	-	2	1132	c.1005C>T	c.(1003-1005)ATC>ATT	p.I335I	PTAFR_uc001bpm.3_Silent_p.I335I|PTAFR_uc009vte.2_Silent_p.I335I	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	335	Cytoplasmic (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		AATTGCCAGGGATCTGGTTGA	0.527													51	113					0	0	0.003610	0	0
SESN2	83667	broad.mit.edu	37	1	28607248	28607248	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:28607248C>T	uc001bps.2	+	10	1731	c.1378C>T	c.(1378-1380)CTG>TTG	p.L460L		NM_031459	NP_113647	P58004	SESN2_HUMAN	sestrin 2	460					cell cycle arrest	cytoplasm|nucleus				skin(3)|ovary(2)|pancreas(1)|lung(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;4.76e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;2.98e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|READ - Rectum adenocarcinoma(331;0.0649)		CTTGCTGCTCCTGGAGGCGCG	0.637													27	62					0	0	0.002096	0	0
SNRNP40	9410	broad.mit.edu	37	1	31742085	31742085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:31742085G>A	uc001bso.2	-	7	824	c.778C>T	c.(778-780)CGT>TGT	p.R260C	SNRNP40_uc009vtt.2_5'UTR|SNRNP40_uc010oge.1_Missense_Mutation_p.R260C	NM_004814	NP_004805	Q96DI7	SNR40_HUMAN	WD repeat domain 57 (U5 snRNP specific)	260	WD 5.					catalytic step 2 spliceosome|cytoplasm|nucleoplasm|small nucleolar ribonucleoprotein complex|U5 snRNP	protein binding				0						TCCCAGACACGAACTGCAAAA	0.448													40	82					0	0	0.002222	0	0
BAI2	576	broad.mit.edu	37	1	32196529	32196529	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:32196529G>C	uc001btn.2	-	29	4606	c.4252C>G	c.(4252-4254)CCC>GCC	p.P1418A	BAI2_uc001btm.2_Missense_Mutation_p.P412A|BAI2_uc001btp.1_Missense_Mutation_p.P412A|BAI2_uc010ogn.1_Missense_Mutation_p.P388A|BAI2_uc010ogo.1_Missense_Mutation_p.P1027A|BAI2_uc010ogp.1_Missense_Mutation_p.P1351A|BAI2_uc010ogq.1_Missense_Mutation_p.P1385A|BAI2_uc001bto.2_Missense_Mutation_p.P1418A	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1418	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		ATTCCATAGGGATTCTGGAGA	0.677													16	52					0	0	0.001216	0	0
SPOCD1	90853	broad.mit.edu	37	1	32280743	32280743	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:32280743G>A	uc001bts.1	-	2	250	c.192C>T	c.(190-192)GCC>GCT	p.A64A	SPOCD1_uc001btu.2_Silent_p.A64A|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	64					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CACCTCGAAGGGCCTCCTTCC	0.677													8	26					0	0	0.003080	0	0
KPNA6	23633	broad.mit.edu	37	1	32632830	32632830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:32632830C>T	uc001bug.2	+	12	1265	c.1177C>T	c.(1177-1179)CGT>TGT	p.R393C	KPNA6_uc001buh.2_Missense_Mutation_p.R168C|KPNA6_uc010ogx.1_Missense_Mutation_p.R390C|KPNA6_uc010ogy.1_Missense_Mutation_p.R398C|KPNA6_uc009vtz.2_Missense_Mutation_p.R288C	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	393	NLS binding site (minor) (By similarity).|ARM 8.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				AGCAGAGTTTCGTACAAGGAA	0.463													90	157					0	0	0.003610	0	0
S100PBP	64766	broad.mit.edu	37	1	33318686	33318686	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:33318686C>G	uc001bvz.2	+	6	1308	c.1031C>G	c.(1030-1032)TCG>TGG	p.S344W	S100PBP_uc001bwc.2_Missense_Mutation_p.S344W|S100PBP_uc001bwd.2_RNA	NM_022753	NP_073590	Q96BU1	S1PBP_HUMAN	S100P binding protein isoform a	344						nucleus	calcium-dependent protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				ACAGGTATCTCGGGGGAGCTT	0.488													3	111					0	0	0.000248	0	0
ZNF362	149076	broad.mit.edu	37	1	33741748	33741748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:33741748C>T	uc001bxc.1	+	3	256	c.86C>T	c.(85-87)CCC>CTC	p.P29L		NM_152493	NP_689706	Q5T0B9	ZN362_HUMAN	zinc finger protein 362	29					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCCCCTCCTCCCACCATGCCC	0.662													24	62					0	0	0.002780	0	0
CSMD2	114784	broad.mit.edu	37	1	33999476	33999476	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:33999476T>A	uc001bxn.1	-	62	9508	c.9479A>T	c.(9478-9480)AAA>ATA	p.K3160I	CSMD2_uc001bxm.1_Missense_Mutation_p.K3304I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3160	Sushi 25.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGGTAGCCTTTTTGACAACG	0.572													19	43					0	0	0.001216	0	0
CSMD2	114784	broad.mit.edu	37	1	34080165	34080165	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:34080165G>A	uc001bxn.1	-	40	5981	c.5952C>T	c.(5950-5952)TTC>TTT	p.F1984F	CSMD2_uc001bxm.1_Silent_p.F2024F|CSMD2_uc001bxo.1_Silent_p.F897F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1984	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGTTGCCTGGGAAGCCGGGGC	0.527													10	23					0	0	0.000978	0	0
CSMD2	114784	broad.mit.edu	37	1	34123639	34123639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:34123639C>T	uc001bxn.1	-	27	4263	c.4234G>A	c.(4234-4236)GAC>AAC	p.D1412N	CSMD2_uc001bxm.1_Missense_Mutation_p.D1452N|CSMD2_uc001bxo.1_Missense_Mutation_p.D325N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1412	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TAGCCAGGGTCACACTGGAAC	0.582													32	70					0	0	0.002096	0	0
CSMD2	114784	broad.mit.edu	37	1	34123683	34123683	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:34123683C>A	uc001bxn.1	-	27	4219	c.4190G>T	c.(4189-4191)AGT>ATT	p.S1397I	CSMD2_uc001bxm.1_Missense_Mutation_p.S1437I|CSMD2_uc001bxo.1_Missense_Mutation_p.S310I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1397	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACTGTCACCACTCCGACTCCC	0.582													41	57					6.5261e-18	1.28655e-17	0.001951	1	0
ZMYM6	9204	broad.mit.edu	37	1	35477493	35477493	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:35477493G>A	uc001byh.2	-	8	1288	c.1060C>T	c.(1060-1062)CAG>TAG	p.Q354*	ZMYM6_uc001byf.1_Nonsense_Mutation_p.Q354*|ZMYM6_uc010oht.1_Nonsense_Mutation_p.Q257*|ZMYM6_uc009vup.2_Nonsense_Mutation_p.Q160*|ZMYM6_uc009vuq.1_Nonsense_Mutation_p.Q354*|ZMYM6_uc009vur.1_Nonsense_Mutation_p.Q160*	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	354	MYM-type 5.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				GATCATACCTGGAAAGCAACC	0.423													16	35					0	0	0.003163	0	0
ZMYM1	79830	broad.mit.edu	37	1	35580267	35580267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:35580267G>A	uc001bym.2	+	11	2984	c.2836G>A	c.(2836-2838)GAT>AAT	p.D946N	ZMYM1_uc001byn.2_Missense_Mutation_p.D946N|ZMYM1_uc010ohu.1_Missense_Mutation_p.D927N|ZMYM1_uc001byo.2_Missense_Mutation_p.D586N|ZMYM1_uc009vut.2_Missense_Mutation_p.D871N	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	946						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GAAATCAGTAGATCTTGGCAA	0.274													24	40					0	0	0.001786	0	0
KIAA0319L	79932	broad.mit.edu	37	1	36020054	36020054	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:36020054G>A	uc001byx.2	-	2	297	c.39C>T	c.(37-39)TCC>TCT	p.S13S	KIAA0319L_uc010ohw.1_RNA|KIAA0319L_uc001byz.2_Silent_p.S13S|KIAA0319L_uc010ohx.1_Silent_p.S13S	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	13	Cytoplasmic (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ATAAAATCCAGGAAGCAGGAT	0.463													37	66					0	0	0.005524	0	0
THRAP3	9967	broad.mit.edu	37	1	36752234	36752235	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:36752234_36752235CC>TT	uc001cae.3	+	4	627_628	c.403_404CC>TT	c.(403-405)CCT>TTT	p.P135F	THRAP3_uc001caf.3_Missense_Mutation_p.P135F|THRAP3_uc001cag.1_Missense_Mutation_p.P135F	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	135	Arg-rich.|Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GAGAAGGTCCCCTTCACCAAGG	0.54			T	USP6	aneurysmal bone cysts								93	178					0	0	0.004672	0	0
GNL2	29889	broad.mit.edu	37	1	38042068	38042068	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:38042068C>T	uc001cbk.2	-	9	1162	c.999G>A	c.(997-999)AAG>AAA	p.K333K	GNL2_uc010oif.1_Silent_p.K174K	NM_013285	NP_037417	Q13823	NOG2_HUMAN	guanine nucleotide binding protein-like 2	333	G.				ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)				TGCAAACTTTCTTAGAACGCA	0.418													31	66					0	0	0.001786	0	0
KIAA0754	643314	broad.mit.edu	37	1	39880101	39880101	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:39880101A>G	uc009vvt.1	+	1	4926	c.4164A>G	c.(4162-4164)CTA>CTG	p.L1388L	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	1252											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GCACAGTGCTACATGGGAAAG	0.458													17	39					0	0	0.000958	0	0
KIAA0754	643314	broad.mit.edu	37	1	39880123	39880123	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:39880123G>T	uc009vvt.1	+	1	4948	c.4186G>T	c.(4186-4188)GCA>TCA	p.A1396S	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	1260											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GCCTCTGGCTGCAACCGCTGG	0.468													21	44					4.54149e-19	8.95711e-19	0.002299	1	0
MACF1	23499	broad.mit.edu	37	1	39913438	39913438	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:39913438C>T	uc010oiu.1	+	47	15296	c.15165C>T	c.(15163-15165)TTC>TTT	p.F5055F	MACF1_uc010ois.1_Silent_p.F4553F	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AATTAAAGTTCCTTAGCCAAA	0.423													33	64					0	0	0.003755	0	0
PABPC4	8761	broad.mit.edu	37	1	40036968	40036968	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:40036968G>A	uc010oiv.1	-	3	1339	c.441C>T	c.(439-441)ACC>ACT	p.T147T	PABPC4_uc001cdl.2_Silent_p.T147T|PABPC4_uc001cdm.2_Silent_p.T147T	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	147	RRM 2.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CAGCCTCTTGGGTCTCGAAGT	0.542													69	118					0	0	0.003610	0	0
ZMPSTE24	10269	broad.mit.edu	37	1	40726592	40726592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:40726592C>T	uc001cfg.2	+	2	416	c.205C>T	c.(205-207)CTC>TTC	p.L69F	uc001cff.2_5'Flank	NM_005857	NP_005848	O75844	FACE1_HUMAN	zinc metallopeptidase STE24	69						endoplasmic reticulum membrane|Golgi membrane|integral to membrane	metal ion binding|metalloexopeptidase activity				0	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			GAAATCTCGACTCTATCAACT	0.378													56	88					0	0	0.003610	0	0
SMAP2	64744	broad.mit.edu	37	1	40881040	40881040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:40881040C>T	uc001cfj.2	+	7	733	c.668C>T	c.(667-669)TCC>TTC	p.S223F	SMAP2_uc010ojh.1_Missense_Mutation_p.S223F|SMAP2_uc001cfk.2_Missense_Mutation_p.S193F|SMAP2_uc010oji.1_Missense_Mutation_p.S140F|SMAP2_uc010ojj.1_Missense_Mutation_p.S39F	NM_022733	NP_073570	Q8WU79	SMAP2_HUMAN	small ArfGAP2	223	Interaction with clathrin heavy chains (By similarity).				regulation of ARF GTPase activity	cytoplasm|nucleus	ARF GTPase activator activity|zinc ion binding				0	Lung NSC(20;1.56e-05)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.04e-17)			CCTTCTTCTTCCGGTTCCAGA	0.453													75	199					0	0	0.003610	0	0
DEM1	64789	broad.mit.edu	37	1	40980727	40980727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:40980727G>A	uc001cfp.2	+	3	716	c.511G>A	c.(511-513)GAA>AAA	p.E171K	DEM1_uc001cfq.2_Missense_Mutation_p.E171K|DEM1_uc001cfr.2_Missense_Mutation_p.E171K|DEM1_uc001cfs.2_Missense_Mutation_p.E171K	NM_022774	NP_073611	Q9H790	EXO5_HUMAN	defects in morphology 1 homolog	171							DNA binding|exonuclease activity				0						AGTGTTTGGGGAAGGGGAGGG	0.498													53	104					0	0	0.003610	0	0
LEPRE1	64175	broad.mit.edu	37	1	43228102	43228102	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:43228102G>A	uc001chv.2	-	2	623	c.510C>T	c.(508-510)TTC>TTT	p.F170F	LEPRE1_uc001chw.2_Silent_p.F170F|LEPRE1_uc001chx.3_Silent_p.F170F|LEPRE1_uc001chy.3_Silent_p.F170F	NM_022356	NP_071751	Q32P28	P3H1_HUMAN	leprecan 1 isoform 1	170	TPR 2.				negative regulation of cell proliferation	endoplasmic reticulum|proteinaceous extracellular matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			ovary(3)|lung(1)	4	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)			L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GATTGCCCACGAAGAAGGTGT	0.463													63	107					0	0	0.003610	0	0
C1orf210	149466	broad.mit.edu	37	1	43748570	43748570	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:43748570G>A	uc001cit.3	-	3	462	c.228C>T	c.(226-228)GGC>GGT	p.G76G		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	76	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCTGTGGGCGGCCTCCCCTTC	0.607													21	50					0	0	0.002780	0	0
CDC20	991	broad.mit.edu	37	1	43825755	43825755	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:43825755C>T	uc001cix.2	+	5	644	c.543C>T	c.(541-543)ATC>ATT	p.I181I	CDC20_uc001ciy.2_Silent_p.I181I	NM_001255	NP_001246	Q12834	CDC20_HUMAN	cell division cycle 20	181					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	cytosol|nucleoplasm|spindle	enzyme binding|protein C-terminus binding				0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CGCCTGAAATCCGAAATGACT	0.527													68	164					0	0	0.003610	0	0
ELOVL1	64834	broad.mit.edu	37	1	43830265	43830265	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:43830265G>A	uc001ciz.2	-	7	672	c.429C>T	c.(427-429)TTC>TTT	p.F143F	ELOVL1_uc001cja.2_Silent_p.F143F|ELOVL1_uc001cjb.2_Silent_p.F143F|ELOVL1_uc001cjc.2_Intron|ELOVL1_uc010okh.1_Silent_p.F116F	NM_022821	NP_073732	Q9BW60	ELOV1_HUMAN	elongation of very long chain fatty acids-like	143					fatty acid elongation, monounsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|sphingolipid biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	fatty acid elongase activity|protein binding				0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CAGAGTGATGGAAGACATGTA	0.557													19	78					0	0	0.001216	0	0
PTCH2	8643	broad.mit.edu	37	1	45288249	45288249	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:45288249G>A	uc010olf.1	-	22	3462	c.3450C>T	c.(3448-3450)CCC>CCT	p.P1150P	PTCH2_uc010olg.1_Silent_p.P848P	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	1150	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CAAAGCTCTGGGGCAGGGAGG	0.627									Basal_Cell_Nevus_syndrome				21	73					0	0	0.001523	0	0
PTCH2	8643	broad.mit.edu	37	1	45296630	45296630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:45296630G>A	uc010olf.1	-	6	715	c.703C>T	c.(703-705)CGG>TGG	p.R235W	PTCH2_uc010olg.1_Intron	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	235	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					AGCAGCTCCCGGAAGCCCTCA	0.647									Basal_Cell_Nevus_syndrome				20	22					0	0	0.001882	0	0
EIF2B3	8891	broad.mit.edu	37	1	45347380	45347380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:45347380G>A	uc001cmt.1	-	7	815	c.688C>T	c.(688-690)CCA>TCA	p.P230S	EIF2B3_uc001cmu.1_Missense_Mutation_p.P230S|EIF2B3_uc001cmv.1_Missense_Mutation_p.P230S|EIF2B3_uc001cmw.2_Missense_Mutation_p.P230S	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	230					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACTAAATATGGAATCAGTTCA	0.408													43	62					0	0	0.002222	0	0
EIF2B3	8891	broad.mit.edu	37	1	45392316	45392316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:45392316C>T	uc001cmt.1	-	5	677	c.550G>A	c.(550-552)GGA>AGA	p.G184R	EIF2B3_uc001cmu.1_Missense_Mutation_p.G184R|EIF2B3_uc001cmv.1_Missense_Mutation_p.G184R|EIF2B3_uc001cmw.2_Missense_Mutation_p.G184R	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	184					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AGGATGGATCCCTTAATGACC	0.458													45	78					0	0	0.002852	0	0
TESK2	10420	broad.mit.edu	37	1	45813622	45813622	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:45813622G>A	uc001cns.1	-	6	994	c.591C>T	c.(589-591)GAC>GAT	p.D197D	TESK2_uc009vxr.1_Silent_p.D197D|TESK2_uc010olo.1_Silent_p.D114D|TESK2_uc009vxs.1_5'UTR	NM_007170	NP_009101	Q96S53	TESK2_HUMAN	testis-specific protein kinase 2	197	Protein kinase.				actin cytoskeleton organization|focal adhesion assembly|spermatogenesis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(2)|pancreas(1)	5	Acute lymphoblastic leukemia(166;0.155)					CCAGGCCAAAGTCAGCTACCA	0.522													47	68					0	0	0.003610	0	0
LRRC41	10489	broad.mit.edu	37	1	46751383	46751383	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:46751383G>A	uc001cpn.2	-	4	1190	c.1146C>T	c.(1144-1146)GCC>GCT	p.A382A	LRRC41_uc010omb.1_Silent_p.A382A|LRRC41_uc001cpo.1_Silent_p.A382A	NM_006369	NP_006360	Q15345	LRC41_HUMAN	MUF1 protein	382										ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(166;0.155)					TAGGCTGTGGGGCTGAGCTAG	0.587													51	103					0	0	0.003610	0	0
NSUN4	387338	broad.mit.edu	37	1	46810494	46810494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:46810494C>T	uc001cpr.1	+	2	224	c.115C>T	c.(115-117)CCT>TCT	p.P39S	NSUN4_uc010omc.1_5'UTR|NSUN4_uc009vyf.1_5'UTR|NSUN4_uc009vyg.1_5'UTR|NSUN4_uc001cpt.1_RNA|NSUN4_uc001cps.1_RNA	NM_199044	NP_950245	Q96CB9	NSUN4_HUMAN	NOL1/NOP2/Sun domain family 4 protein	39							methyltransferase activity				0	Acute lymphoblastic leukemia(166;0.155)					GCCCAAATTCCCTGCTGTTCG	0.502													7	177					0	0	0.003080	0	0
DMBX1	127343	broad.mit.edu	37	1	46976841	46976841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:46976841G>A	uc001cpx.2	+	3	598	c.583G>A	c.(583-585)GAT>AAT	p.D195N	DMBX1_uc001cpw.2_Missense_Mutation_p.D190N	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	195					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AGCCCCCGAGGATCAGCCGGA	0.672													13	28					0	0	0.003163	0	0
DMBX1	127343	broad.mit.edu	37	1	46977781	46977781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:46977781C>T	uc001cpx.2	+	4	779	c.764C>T	c.(763-765)TCC>TTC	p.S255F	DMBX1_uc001cpw.2_Missense_Mutation_p.S250F	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	255					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CCCTCCCACTCCTATTCCTCG	0.617													32	101					0	0	0.004878	0	0
SLC5A9	200010	broad.mit.edu	37	1	48708153	48708153	+	Silent	SNP	C	A	A	rs138580488		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:48708153C>A	uc001cro.2	+	13	1754	c.1702C>A	c.(1702-1704)CGG>AGG	p.R568R	SLC5A9_uc001crn.2_Silent_p.R593R|SLC5A9_uc010omt.1_Silent_p.R582R|SLC5A9_uc001crp.2_Silent_p.R235R|SLC5A9_uc010omu.1_Silent_p.R235R|SLC5A9_uc009vyt.1_RNA	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	568	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						ATGGTGGACTCGGAACTGCCC	0.597													39	66					2.05212e-20	4.05289e-20	0.005524	1	0
FAF1	11124	broad.mit.edu	37	1	51048346	51048346	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:51048346A>T	uc009vyx.1	-	13	1120	c.1057T>A	c.(1057-1059)TTT>ATT	p.F353I	FAF1_uc009vyw.1_RNA|FAF1_uc001cse.1_Missense_Mutation_p.F353I|FAF1_uc010onc.1_Missense_Mutation_p.F111I	NM_007051	NP_008982	Q9UNN5	FAF1_HUMAN	FAS-associated factor 1	353					apoptosis|cytoplasmic sequestering of NF-kappaB|positive regulation of apoptosis|positive regulation of protein complex assembly|proteasomal ubiquitin-dependent protein catabolic process|regulation of protein catabolic process	CD95 death-inducing signaling complex|cytosol|perinuclear region of cytoplasm	heat shock protein binding|NF-kappaB binding|protein kinase binding|protein kinase regulator activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(3;3.18e-11)|all cancers(3;0.00526)		GAGCCAATAAAAAATACAGGA	0.343													55	85					0	0	0.003610	0	0
ZCCHC11	23318	broad.mit.edu	37	1	52991715	52991715	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:52991715G>T	uc001ctx.2	-	2	472	c.238C>A	c.(238-240)CTT>ATT	p.L80I	ZCCHC11_uc001cty.2_Missense_Mutation_p.L80I|ZCCHC11_uc001ctz.2_Missense_Mutation_p.L80I|ZCCHC11_uc009vze.1_Missense_Mutation_p.L80I|ZCCHC11_uc009vzf.1_Intron|ZCCHC11_uc001cub.2_Missense_Mutation_p.L80I|ZCCHC11_uc001cuc.2_RNA|ZCCHC11_uc001cud.2_Missense_Mutation_p.L80I	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	80					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						GGACCTGGAAGGTTGGCAGCA	0.348													70	145					2.67039e-37	5.29323e-37	0.003610	1	0
ECHDC2	55268	broad.mit.edu	37	1	53364886	53364886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:53364886G>A	uc001cup.3	-	8	959	c.713C>T	c.(712-714)GCC>GTC	p.A238V	ECHDC2_uc001cun.2_Missense_Mutation_p.A161V|ECHDC2_uc001cuo.3_Missense_Mutation_p.A207V|ECHDC2_uc010onk.1_Missense_Mutation_p.A192V	NM_018281	NP_060751	Q86YB7	ECHD2_HUMAN	enoyl Coenzyme A hydratase domain containing 2	238					fatty acid metabolic process	mitochondrion	lyase activity			central_nervous_system(1)	1						CAGCCGCACGGCAATGGGGGC	0.547													17	52					0	0	0.006122	0	0
SLC1A7	6512	broad.mit.edu	37	1	53558404	53558404	+	Missense_Mutation	SNP	C	T	T	rs139648137		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:53558404C>T	uc001cuy.2	-	7	1021	c.853G>A	c.(853-855)GAC>AAC	p.D285N	SLC1A7_uc001cux.2_5'Flank	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	285						integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	GCCCTGGGGTCGTCCATCTCC	0.622													35	66					0	0	0.001485	0	0
DMRTB1	63948	broad.mit.edu	37	1	53927235	53927235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:53927235G>A	uc001cvq.1	+	2	722	c.667G>A	c.(667-669)GGC>AGC	p.G223S		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	223	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						GTTCCCGCTGGGCTACCTGGA	0.667													24	41					0	0	0.002780	0	0
GLIS1	148979	broad.mit.edu	37	1	53975611	53975611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:53975611G>A	uc001cvr.1	-	8	2015	c.1448C>T	c.(1447-1449)CCG>CTG	p.P483L		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	483	Pro-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTGGCCCCCCGGAGAATGGCT	0.687													4	8					0	0	0.000602	0	0
MRPL37	51253	broad.mit.edu	37	1	54666161	54666161	+	Missense_Mutation	SNP	A	G	G	rs142946413	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:54666161A>G	uc001cxa.3	+	1	322	c.245A>G	c.(244-246)TAC>TGC	p.Y82C	CYB5RL_uc009vzo.2_5'Flank|CYB5RL_uc001cwx.3_5'Flank|CYB5RL_uc001cwy.3_5'Flank|MRPL37_uc009vzp.2_Missense_Mutation_p.T52A|MRPL37_uc001cxb.1_Missense_Mutation_p.Y82C|MRPL37_uc001cxc.3_Intron|MRPL37_uc010oob.1_RNA	NM_016491	NP_057575	Q9BZE1	RM37_HUMAN	mitochondrial ribosomal protein L37 precursor	82					translation	mitochondrial ribosome	structural constituent of ribosome				0						GACCGCGGCTACAAGGACCCA	0.617													12	44					0	0	0.001368	0	0
C1orf175	374977	broad.mit.edu	37	1	55139713	55139713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:55139713G>A	uc010ooe.1	+	10	2149	c.1825G>A	c.(1825-1827)GGG>AGG	p.G609R	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.G177R|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.G127R|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.G609R|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	609	Helical; (Potential).					integral to membrane	binding				0						CCCGGCGCTGGGGCTTCTGCT	0.493													44	111					0	0	0.003610	0	0
USP24	23358	broad.mit.edu	37	1	55563389	55563389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:55563389C>T	uc001cyg.3	-	45	5117	c.5117G>A	c.(5116-5118)AGA>AAA	p.R1706K		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1866					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						CACTGTTATTCTCTAAAGAAA	0.363													5	8					0	0	0.000602	0	0
C8B	732	broad.mit.edu	37	1	57422471	57422471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:57422471C>T	uc001cyp.2	-	3	429	c.362G>A	c.(361-363)CGA>CAA	p.R121Q	C8B_uc010oon.1_Missense_Mutation_p.R59Q|C8B_uc010ooo.1_Missense_Mutation_p.R69Q	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	121	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GCCTTCACATCGCACTTGACT	0.483													103	193					0	0	0.003610	0	0
DAB1	1600	broad.mit.edu	37	1	57480751	57480751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:57480751C>T	uc001cys.1	-	14	1923	c.1249G>A	c.(1249-1251)GAT>AAT	p.D417N	DAB1_uc001cyt.1_Missense_Mutation_p.D415N|DAB1_uc001cyq.1_Missense_Mutation_p.D415N|DAB1_uc001cyr.1_Missense_Mutation_p.D331N|DAB1_uc009vzw.1_Missense_Mutation_p.D399N|DAB1_uc009vzx.1_Missense_Mutation_p.D417N	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	450					cell differentiation|nervous system development					skin(2)|ovary(1)	3						ATCTGGAAATCCTTAAACGTT	0.592													20	51					0	0	0.001216	0	0
KANK4	163782	broad.mit.edu	37	1	62739945	62739945	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:62739945G>A	uc001dah.3	-	3	1208	c.831C>T	c.(829-831)TTC>TTT	p.F277F	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	277	Pro-rich.									ovary(3)|skin(2)|lung(1)	6						AGCCAGGGGTGAACAACACCT	0.542													7	18					0	0	0.004482	0	0
KANK4	163782	broad.mit.edu	37	1	62740018	62740018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:62740018G>A	uc001dah.3	-	3	1135	c.758C>T	c.(757-759)TCA>TTA	p.S253L	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	253	Pro-rich.							p.S253S(1)		ovary(3)|skin(2)|lung(1)	6						ATTCTGGAATGAGAAAGGAGG	0.557													14	34					0	0	0.002450	0	0
ROR1	4919	broad.mit.edu	37	1	64605949	64605949	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:64605949G>A	uc001dbj.2	+	6	1167	c.768G>A	c.(766-768)GAG>GAA	p.E256E	ROR1_uc001dbi.3_Silent_p.E256E|uc001dbl.2_Intron	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	256	FZ.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						AAATCCTGGAGAATGTCCTGT	0.488													27	79					0	0	0.001786	0	0
LEPR	3953	broad.mit.edu	37	1	66102375	66102375	+	Missense_Mutation	SNP	G	A	A	rs56117117		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:66102375G>A	uc001dci.2	+	20	3377	c.3175G>A	c.(3175-3177)GAA>AAA	p.E1059K	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1059	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		AGGATTGGATGAACTTTTGAA	0.368													39	68					0	0	0.002852	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76877951	76877951	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:76877951T>A	uc001dhh.2	+	3	635	c.472T>A	c.(472-474)TTC>ATC	p.F158I	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.F158I|ST6GALNAC3_uc010orh.1_Missense_Mutation_p.F93I	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	158	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						TTGGGGACCTTTCCGCAATAT	0.393													8	25					0	0	0.004482	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77509952	77509952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:77509952C>T	uc001dhi.2	+	3	500	c.325C>T	c.(325-327)CGG>TGG	p.R109W	ST6GALNAC5_uc010ori.1_Intron|ST6GALNAC5_uc009wbw.2_RNA	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	109	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						GCTGCACAGTCGGCAAGGCTC	0.617													18	37					0	0	0.000958	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77528847	77528847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:77528847G>A	uc001dhi.2	+	5	1142	c.967G>A	c.(967-969)GAA>AAA	p.E323K	ST6GALNAC5_uc010ori.1_3'UTR|ST6GALNAC5_uc009wbw.2_RNA|ST6GALNAC5_uc001dhj.2_5'Flank	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	323	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						CTGGAAACCAGAATCACTTGC	0.433													15	18					0	0	0.000958	0	0
LPHN2	23266	broad.mit.edu	37	1	82431863	82431863	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:82431863G>A	uc001dit.3	+	11	2269	c.2088G>A	c.(2086-2088)AGG>AGA	p.R696R	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.R696R|LPHN2_uc001div.2_Silent_p.R696R|LPHN2_uc009wcd.2_Silent_p.R696R|LPHN2_uc001diw.2_Silent_p.R280R	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	709	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AGAACAGCAGGAATGGTAAGG	0.363													17	28					0	0	0.004007	0	0
TTLL7	79739	broad.mit.edu	37	1	84399432	84399432	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:84399432G>A	uc001djc.2	-	9	1302	c.906C>T	c.(904-906)ACC>ACT	p.T302T	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	302	TTL.				cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		CTACAATCAGGGTCTTTACCA	0.438													8	22					0	0	0.003080	0	0
SSX2IP	117178	broad.mit.edu	37	1	85128012	85128012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:85128012G>A	uc001dkh.2	-	9	1071	c.796C>T	c.(796-798)CGT>TGT	p.R266C	SSX2IP_uc001dkf.2_Missense_Mutation_p.R239C|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Missense_Mutation_p.R239C|SSX2IP_uc001dki.2_Missense_Mutation_p.R266C|SSX2IP_uc010osa.1_Missense_Mutation_p.R239C|SSX2IP_uc001dkj.2_Missense_Mutation_p.R266C|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Missense_Mutation_p.R262C	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	266	Potential.				cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		TGTTTCTGACGATATTCATAA	0.323													32	51					0	0	0.001512	0	0
LPAR3	23566	broad.mit.edu	37	1	85331159	85331159	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:85331159C>T	uc001dkl.2	-	1	684	c.645G>A	c.(643-645)AGG>AGA	p.R215R	LPAR3_uc009wcj.1_Silent_p.R215R	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	215	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						CGTTGGTTTTCCTCTTGACGT	0.502													18	42					0	0	0.001882	0	0
LPAR3	23566	broad.mit.edu	37	1	85331488	85331488	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:85331488G>A	uc001dkl.2	-	1	355	c.316C>T	c.(316-318)CAG>TAG	p.Q106*	LPAR3_uc009wcj.1_Nonsense_Mutation_p.Q106*	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	106	Helical; Name=3; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						AGAAGCCCCTGACGGAGAAAC	0.502													88	163					0	0	0.003610	0	0
CLCA4	22802	broad.mit.edu	37	1	87025615	87025615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:87025615G>A	uc009wcs.2	+	2	204	c.160G>A	c.(160-162)GAT>AAT	p.D54N	CLCA4_uc009wct.2_5'UTR|CLCA4_uc009wcu.2_5'UTR	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	54						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TTAATGACAGGATATGGTGAC	0.348													61	111					0	0	0.003610	0	0
TGFBR3	7049	broad.mit.edu	37	1	92185583	92185583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:92185583G>A	uc001doh.2	-	9	1746	c.1280C>T	c.(1279-1281)CCT>CTT	p.P427L	TGFBR3_uc009wde.2_Missense_Mutation_p.P204L|TGFBR3_uc010osy.1_Missense_Mutation_p.P385L|TGFBR3_uc001doi.2_Missense_Mutation_p.P426L|TGFBR3_uc001doj.2_Missense_Mutation_p.P426L	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	427	Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		GGGAATGACAGGGTCCTTTGG	0.522													44	113					0	0	0.002852	0	0
ABCA4	24	broad.mit.edu	37	1	94520762	94520762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:94520762C>T	uc001dqh.2	-	16	2596	c.2492G>A	c.(2491-2493)GGG>GAG	p.G831E	ABCA4_uc010otn.1_Missense_Mutation_p.G757E	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	831					phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GAATTCGTCCCCTTCCGTGGG	0.537													4	66					0	0	0.000602	0	0
ABCA4	24	broad.mit.edu	37	1	94526256	94526256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:94526256G>A	uc001dqh.2	-	14	2101	c.1997C>T	c.(1996-1998)TCT>TTT	p.S666F	ABCA4_uc010otn.1_Missense_Mutation_p.S666F	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	666	Helical; (Potential).				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CATGGAGACAGAGTAGATCCA	0.428													9	30					0	0	0.004482	0	0
ABCA4	24	broad.mit.edu	37	1	94564365	94564365	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:94564365G>A	uc001dqh.2	-	6	857	c.753C>T	c.(751-753)TTC>TTT	p.F251F	ABCA4_uc010otn.1_Silent_p.F251F	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	251	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GGAAGAGCTTGAAGAAGTCCA	0.582													19	39					0	0	0.006122	0	0
DPYD	1806	broad.mit.edu	37	1	98164935	98164935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:98164935C>T	uc001drv.2	-	6	789	c.652G>A	c.(652-654)GAA>AAA	p.E218K	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	218					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TCTTGTTTTTCAAATATAGTG	0.363													16	28					0	0	0.004007	0	0
WDR47	22911	broad.mit.edu	37	1	109566060	109566060	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:109566060C>T	uc001dwj.2	-	2	451	c.75G>A	c.(73-75)AAG>AAA	p.K25K	WDR47_uc001dwl.2_Silent_p.K25K|WDR47_uc001dwi.2_Silent_p.K25K|WDR47_uc001dwk.2_Silent_p.K25K	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	25	LisH.									ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		TGTGAAGCTTCTTTGAATTCA	0.363													19	762					0	0	0.002299	0	0
TMEM167B	56900	broad.mit.edu	37	1	109635626	109635627	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:109635626_109635627GG>TT	uc001dwn.2	+	2	217_218	c.125_126GG>TT	c.(124-126)TGG>TTT	p.W42F	TMEM167B_uc009weu.2_Intron	NM_020141	NP_064526	Q9NRX6	KISHB_HUMAN	transmembrane protein 167B precursor	42	Extracellular (Potential).					Golgi membrane|integral to membrane					0						AAGGGTGTTTGGGGTGTGTTTT	0.495													12	484					0	0	0.004672	0	0
AMPD2	271	broad.mit.edu	37	1	110163638	110163638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:110163638G>A	uc009wfh.1	+	2	545	c.3G>A	c.(1-3)ATG>ATA	p.M1I	AMPD2_uc009wfg.1_Intron|AMPD2_uc001dyb.1_Intron|AMPD2_uc001dyc.1_Missense_Mutation_p.M1I|AMPD2_uc010ovr.1_5'UTR	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	1					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		TAGACAACATGAGAAATCGTG	0.652													8	23					0	0	0.000673	0	0
C1orf103	55791	broad.mit.edu	37	1	111493978	111493978	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:111493978T>C	uc001eaa.2	-	2	1784	c.1528A>G	c.(1528-1530)ATA>GTA	p.I510V	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	510					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		GAGGAACTTATTTTCTCTATG	0.403													43	104					0	0	0.003610	0	0
CHI3L2	1117	broad.mit.edu	37	1	111778695	111778695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:111778695G>A	uc001eam.2	+	7	726	c.655G>A	c.(655-657)GAA>AAA	p.E219K	CHI3L2_uc001ean.2_Missense_Mutation_p.E209K|CHI3L2_uc001eao.2_Missense_Mutation_p.E140K|CHI3L2_uc009wga.2_Missense_Mutation_p.E140K	NM_004000	NP_003991	Q15782	CH3L2_HUMAN	chitinase 3-like 2 isoform a	219					chitin catabolic process	extracellular space	cation binding|chitinase activity			central_nervous_system(1)	1		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		TGGGTCTTGGGAAAAGCCCCT	0.517													69	145					0	0	0.003610	0	0
ATP5F1	515	broad.mit.edu	37	1	112002250	112002251	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:112002250_112002251AC>TT	uc001ebc.2	+	6	1106_1107	c.685_686AC>TT	c.(685-687)ACA>TTA	p.T229L	ATP5F1_uc009wgf.1_Missense_Mutation_p.T376L|ATP5F1_uc001ebd.3_RNA	NM_001688	NP_001679	P24539	AT5F1_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	229					ATP catabolic process|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding				0		all_cancers(81;8.16e-06)|all_epithelial(167;5.63e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		AAGCATCTCCACACAGCAGGTA	0.426													9	15					0	0	0.004672	0	0
TRIM33	51592	broad.mit.edu	37	1	114973461	114973461	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:114973461C>A	uc001eew.2	-	6	1198	c.1114G>T	c.(1114-1116)GAA>TAA	p.E372*	TRIM33_uc010owr.1_5'Flank|TRIM33_uc010ows.1_5'UTR|TRIM33_uc001eex.2_Nonsense_Mutation_p.E372*	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	372	Necessary for oligomerization.|Potential.				negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTATTAATTTCATTGATAAGG	0.323			T	RET	papillary thyroid								51	93					2.73381e-35	5.41646e-35	0.003610	1	0
DENND2C	163259	broad.mit.edu	37	1	115142866	115142866	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:115142866G>A	uc001efd.1	-	15	2766	c.2064C>T	c.(2062-2064)CTC>CTT	p.L688L	DENND2C_uc001eez.2_Intron|DENND2C_uc001efc.1_Silent_p.L631L	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	688	DENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCTCCAAAAGGAGAGAGGCAC	0.403													18	30					0	0	0.004990	0	0
AMPD1	270	broad.mit.edu	37	1	115218600	115218600	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:115218600G>A	uc001efe.1	-	11	1497	c.1413C>T	c.(1411-1413)TTC>TTT	p.F471F	AMPD1_uc001eff.1_Silent_p.F467F	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	471					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	AATGTGGAAGGAAATTCTTGG	0.438													40	98					0	0	0.003610	0	0
AMPD1	270	broad.mit.edu	37	1	115219982	115219982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:115219982G>A	uc001efe.1	-	10	1462	c.1378C>T	c.(1378-1380)CCC>TCC	p.P460S	AMPD1_uc001eff.1_Missense_Mutation_p.P456S	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	460					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TAGATCCTGGGAACCTGGATC	0.522													29	47					0	0	0.002096	0	0
TSPAN2	10100	broad.mit.edu	37	1	115615584	115615584	+	Silent	SNP	G	A	A	rs150329225		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:115615584G>A	uc001eft.2	-	2	176	c.114C>T	c.(112-114)TTC>TTT	p.F38F		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	38	Extracellular (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		TGGCACCTCCGAACCGAAACC	0.502													28	54					0	0	0.003271	0	0
TBX15	6913	broad.mit.edu	37	1	119428085	119428085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:119428085G>A	uc001ehl.1	-	8	1076	c.761C>T	c.(760-762)TCG>TTG	p.S254L	TBX15_uc009whj.1_Missense_Mutation_p.S78L	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	360						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		AGAAGAAGCCGAAGGGGATGG	0.478													4	11					0	0	0.000248	0	0
ADAM30	11085	broad.mit.edu	37	1	120437582	120437582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:120437582C>T	uc001eij.2	-	1	1532	c.1378G>A	c.(1378-1380)GAA>AAA	p.E460K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	460	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TCATTTCCTTCCTGCCTACAC	0.463													209	377					0	0	0.003610	0	0
ADAM30	11085	broad.mit.edu	37	1	120437739	120437739	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:120437739C>T	uc001eij.2	-	1	1375	c.1221G>A	c.(1219-1221)GTG>GTA	p.V407V		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	407	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CATTGTCCTCCACAATTTTGT	0.403													32	844					0	0	0.002445	0	0
BCL9	607	broad.mit.edu	37	1	147091084	147091084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:147091084C>T	uc001epq.2	+	8	1863	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	BCL9_uc010ozr.1_Missense_Mutation_p.P301S	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	375	CTNNB1-binding.|Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CATGCTTTTTCCTGATGAGAA	0.537			T	IGH@|IGL@	B-ALL								44	105					0	0	0.003610	0	0
BCL9	607	broad.mit.edu	37	1	147092780	147092780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:147092780C>T	uc001epq.2	+	8	3559	c.2819C>T	c.(2818-2820)CCC>CTC	p.P940L	BCL9_uc010ozr.1_Missense_Mutation_p.P866L	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	940	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CCAAAACCTCCCCTTCAGAGT	0.567			T	IGH@|IGL@	B-ALL								28	39					0	0	0.001271	0	0
ACP6	51205	broad.mit.edu	37	1	147120214	147120214	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:147120214C>T	uc001epr.2	-	9	1442	c.978_splice	c.e9-1	p.R326_splice		NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor						lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					ATACAGCTTTCTGCAAGAGGA	0.493													26	49					0	0	0.005443	0	0
ACP6	51205	broad.mit.edu	37	1	147126388	147126388	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:147126388T>C	uc001epr.2	-	6	1165	c.701A>G	c.(700-702)AAG>AGG	p.K234R	ACP6_uc009wjj.1_Missense_Mutation_p.K191R	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	234					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					GTCCTTCACCTTTTTCAAATC	0.428													3	141					0	0	0.000248	0	0
GJA5	2702	broad.mit.edu	37	1	147230570	147230570	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:147230570C>T	uc001eps.1	-	2	918	c.777G>A	c.(775-777)CAG>CAA	p.Q259Q	GJA5_uc001ept.1_Silent_p.Q259Q	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	259	Cytoplasmic (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			GTGTGCAGCTCTGGACTATGC	0.532													28	44					0	0	0.005443	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150526356	150526356	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:150526356A>T	uc001eux.2	+	6	1125	c.889A>T	c.(889-891)AGA>TGA	p.R297*	ADAMTSL4_uc001euw.2_Nonsense_Mutation_p.R297*|ADAMTSL4_uc009wlw.2_Nonsense_Mutation_p.R297*|ADAMTSL4_uc010pcg.1_Nonsense_Mutation_p.R297*	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	297					apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GGTAGCAGGGAGACGCCCTGA	0.677													7	11					0	0	0.003080	0	0
POGZ	23126	broad.mit.edu	37	1	151400343	151400343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:151400343G>A	uc001eyd.1	-	7	1340	c.1034C>T	c.(1033-1035)GCT>GTT	p.A345V	POGZ_uc001eye.1_Missense_Mutation_p.A292V|POGZ_uc010pdb.1_Missense_Mutation_p.A336V|POGZ_uc001eyf.1_Missense_Mutation_p.A292V|POGZ_uc010pdc.1_Missense_Mutation_p.A283V|POGZ_uc009wmv.1_Missense_Mutation_p.A250V|POGZ_uc010pdd.1_Intron|POGZ_uc001eyg.1_Missense_Mutation_p.A345V	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	345					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			AGAGCCATGAGCAGAGCTGTT	0.468													11	23					0	0	0.000978	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058033	152058033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:152058033C>T	uc001ezo.1	-	3	2190	c.2125G>A	c.(2125-2127)GAG>AAG	p.E709K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	709							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTTCCTTTCTCTTCTTTGCTA	0.453													21	77					0	0	0.002299	0	0
TCHH	7062	broad.mit.edu	37	1	152082159	152082159	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:152082159C>T	uc001ezp.2	-	2	3534	c.3534G>A	c.(3532-3534)CAG>CAA	p.Q1178Q	TCHH_uc009wne.1_Silent_p.Q1178Q	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1178	10 X 30 AA tandem repeats.|4-10.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			gctcttcctcctgctgcagct	0.234													16	21					0	0	0.004990	0	0
FLG	2312	broad.mit.edu	37	1	152282941	152282941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:152282941C>T	uc001ezu.1	-	3	4457	c.4421G>A	c.(4420-4422)CGA>CAA	p.R1474Q	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1474	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGAGCTGTTTCGTGCCTGCTC	0.577									Ichthyosis				74	209					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152286781	152286781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:152286781C>T	uc001ezu.1	-	3	617	c.581G>A	c.(580-582)GGA>GAA	p.G194E	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	194	Potential.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTATTGTCTCCTAATCTAGT	0.318									Ichthyosis				36	77					0	0	0.003755	0	0
LCE3C	353144	broad.mit.edu	37	1	152573212	152573212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:152573212C>T	uc001fac.2	+	1	75	c.5C>T	c.(4-6)TCC>TTC	p.S2F		NM_178434	NP_848521	Q5T5A8	LCE3C_HUMAN	late cornified envelope 3C	2					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0313)|Kidney(5;0.0367)		GCAAAGATGTCCTGCCAGCAA	0.502													8	142					0	0	0.003080	0	0
KPRP	448834	broad.mit.edu	37	1	152733109	152733109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:152733109C>T	uc001fal.1	+	2	1103	c.1045C>T	c.(1045-1047)CCC>TCC	p.P349S		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	349	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGATTCCTCCCATCAGACG	0.647													12	28					0	0	0.001855	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153276335	153276335	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:153276335T>C	uc001fbn.1	-	4	580	c.527A>G	c.(526-528)AAG>AGG	p.K176R		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	176					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGTCTTACCCTTCCTGGGCAT	0.532													32	80					0	0	0.001287	0	0
NUP210L	91181	broad.mit.edu	37	1	153995689	153995689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:153995689C>T	uc001fdw.2	-	31	4279	c.4207G>A	c.(4207-4209)GGC>AGC	p.G1403S	NUP210L_uc009woq.2_Missense_Mutation_p.G312S|NUP210L_uc010peh.1_Missense_Mutation_p.G1403S	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1403						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AGAGACATGCCCAAGGGAAAT	0.483													33	102					0	0	0.003755	0	0
UBAP2L	9898	broad.mit.edu	37	1	154209586	154209586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:154209586G>A	uc001fep.3	+	8	844	c.677G>A	c.(676-678)GGC>GAC	p.G226D	UBAP2L_uc009wot.2_Missense_Mutation_p.G226D|UBAP2L_uc010pek.1_Missense_Mutation_p.G218D|UBAP2L_uc010pel.1_Missense_Mutation_p.G236D|UBAP2L_uc001fen.1_Missense_Mutation_p.G225D|UBAP2L_uc010pen.1_Missense_Mutation_p.G140D	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	226					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			AACAACACTGGCCACTTTGAA	0.393													21	82					0	0	0.001523	0	0
UBAP2L	9898	broad.mit.edu	37	1	154239019	154239020	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:154239019_154239020CG>AT	uc001fep.3	+	25	3112_3113	c.2945_2946CG>AT	c.(2944-2946)TCG>TAT	p.S982Y	UBAP2L_uc010pel.1_Missense_Mutation_p.S992Y|UBAP2L_uc001feq.2_Missense_Mutation_p.S178Y|UBAP2L_uc001fer.2_Missense_Mutation_p.S178Y	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	982					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CCAGATATCTCGGGTTCTGTGT	0.5													7	348					0	0	0.004672	0	0
ADAM15	8751	broad.mit.edu	37	1	155030122	155030122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:155030122G>A	uc001fgr.1	+	13	1434	c.1333G>A	c.(1333-1335)GAT>AAT	p.D445N	ADAM15_uc001fgq.1_Missense_Mutation_p.D130N|ADAM15_uc010pet.1_Missense_Mutation_p.D429N|ADAM15_uc010peu.1_Missense_Mutation_p.D462N|ADAM15_uc001fgt.1_Missense_Mutation_p.D445N|ADAM15_uc010pev.1_Missense_Mutation_p.D455N|ADAM15_uc001fgs.1_Missense_Mutation_p.D445N|ADAM15_uc001fgu.1_Missense_Mutation_p.D445N|ADAM15_uc001fgw.1_Missense_Mutation_p.D445N|ADAM15_uc001fgv.1_Missense_Mutation_p.D445N|ADAM15_uc001fgx.1_Missense_Mutation_p.D445N|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA|ADAM15_uc001fhb.1_5'Flank	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	445	Disintegrin.|Extracellular (Potential).				angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			GGACTGCGTCGATCCCTGCTG	0.612													12	146					0	0	0.000978	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155935516	155935516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:155935516G>A	uc001fmt.2	-	5	494	c.376C>T	c.(376-378)CCC>TCC	p.P126S	ARHGEF2_uc001fmr.2_Missense_Mutation_p.P99S|ARHGEF2_uc001fms.2_Missense_Mutation_p.P126S|ARHGEF2_uc001fmu.2_Missense_Mutation_p.P171S|ARHGEF2_uc010pgt.1_Missense_Mutation_p.P99S|ARHGEF2_uc010pgu.1_Missense_Mutation_p.P171S	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	126					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CTGTCGGAGGGGTAGATGGCC	0.622													23	33					0	0	0.003330	0	0
IQGAP3	128239	broad.mit.edu	37	1	156498311	156498311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:156498311G>A	uc001fpf.2	-	36	4738	c.4663C>T	c.(4663-4665)CCC>TCC	p.P1555S		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1555					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGAGAGGCGGGAAGATCTTCA	0.542													15	85					0	0	0.003163	0	0
NTRK1	4914	broad.mit.edu	37	1	156841478	156841478	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:156841478A>G	uc001fqh.1	+	7	837	c.781A>G	c.(781-783)AAG>GAG	p.K261E	NTRK1_uc001fqf.1_Missense_Mutation_p.K231E|NTRK1_uc009wsi.1_Intron|NTRK1_uc001fqi.1_Missense_Mutation_p.K261E|NTRK1_uc009wsk.1_Missense_Mutation_p.K261E	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	261	Ig-like C2-type 1.|Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CCTCAACAGGAAGAACGTGAC	0.587			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			46	43					0	0	0.003610	0	0
NTRK1	4914	broad.mit.edu	37	1	156844394	156844394	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:156844394G>A	uc001fqh.1	+	10	1283	c.1227G>A	c.(1225-1227)GAG>GAA	p.E409E	NTRK1_uc001fqf.1_Silent_p.E373E|NTRK1_uc009wsi.1_Silent_p.E108E|NTRK1_uc001fqi.1_Silent_p.E403E|NTRK1_uc009wsk.1_Silent_p.E403E	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	409	Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	ACCCGGTGGAGAAGAAGGACG	0.547			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			17	16					0	0	0.001523	0	0
CD1D	912	broad.mit.edu	37	1	158152832	158152832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158152832G>A	uc001frr.2	+	5	1271	c.772G>A	c.(772-774)GAC>AAC	p.D258N	CD1D_uc009wss.2_Intron	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	258	Ig-like.|Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					GCCCAATGCTGACGAGACATG	0.602													21	73					0	0	0.002299	0	0
OR10T2	128360	broad.mit.edu	37	1	158368827	158368827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158368827C>T	uc010pih.1	-	1	430	c.430G>A	c.(430-432)GAG>AAG	p.E144K		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					GAAATCAACTCCAACCCCAGC	0.473													43	44					0	0	0.002852	0	0
OR10T2	128360	broad.mit.edu	37	1	158368941	158368941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158368941G>A	uc010pih.1	-	1	316	c.316C>T	c.(316-318)CTT>TTT	p.L106F		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					GCAAAGCCAAGGAAAAAGAAC	0.493													30	21					0	0	0.001271	0	0
OR10K1	391109	broad.mit.edu	37	1	158435677	158435677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158435677C>T	uc010pij.1	+	1	326	c.326C>T	c.(325-327)TCC>TTC	p.S109F		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TTCTTTGGCTCCTCTCACTCC	0.517													22	92					0	0	0.003954	0	0
OR10R2	343406	broad.mit.edu	37	1	158449871	158449871	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158449871C>T	uc010pik.1	+	1	204	c.204C>T	c.(202-204)GTC>GTT	p.V68V	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	68	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					TTATCAGTGTCATCCACCTGG	0.428													46	49					0	0	0.002852	0	0
OR10R2	343406	broad.mit.edu	37	1	158450082	158450082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158450082G>A	uc010pik.1	+	1	415	c.415G>A	c.(415-417)GGT>AGT	p.G139S	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	139	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					GGGTGTGATGGGTTATGATCG	0.488													38	148					0	0	0.002522	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576825	158576825	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158576825C>T	uc010pio.1	+	1	597	c.597C>T	c.(595-597)ATC>ATT	p.I199I		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					AGCTGAGGATCTTTATCCTCA	0.512													31	24					0	0	0.001786	0	0
SPTA1	6708	broad.mit.edu	37	1	158631086	158631086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158631086C>T	uc001fst.1	-	18	2777	c.2578G>A	c.(2578-2580)GTA>ATA	p.V860I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	860	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCTTCCTCTACCATTTTGTTT	0.383													35	44					0	0	0.004289	0	0
OR6N1	128372	broad.mit.edu	37	1	158735659	158735659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158735659G>A	uc010piq.1	-	1	814	c.814C>T	c.(814-816)CAG>TAG	p.Q272*		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GCCAGGGCCTGGTCATAGTCC	0.537													27	143					0	0	0.005443	0	0
OR6N1	128372	broad.mit.edu	37	1	158736341	158736341	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158736341C>T	uc010piq.1	-	1	132	c.132G>A	c.(130-132)CTG>CTA	p.L44L		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CCAGGAATATCAGCAGGTTTC	0.498													13	59					0	0	0.001368	0	0
OR6N1	128372	broad.mit.edu	37	1	158736456	158736456	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158736456C>T	uc010piq.1	-	1	17	c.17G>A	c.(16-18)TGG>TAG	p.W6*		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TACCTGGCTCCAGTTCCCTGT	0.463													5	16					0	0	0.001984	0	0
PYHIN1	149628	broad.mit.edu	37	1	158912086	158912086	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:158912086T>C	uc001ftb.2	+	5	1144	c.899T>C	c.(898-900)GTT>GCT	p.V300A	PYHIN1_uc001ftc.2_Missense_Mutation_p.V291A|PYHIN1_uc001ftd.2_Missense_Mutation_p.V300A|PYHIN1_uc001fte.2_Missense_Mutation_p.V291A	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	300	HIN-200.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					ACGTTTGAGGTTCCAAAGGAC	0.348													12	37					0	0	0.001368	0	0
CRP	1401	broad.mit.edu	37	1	159683763	159683763	+	Missense_Mutation	SNP	C	T	T	rs151273324		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:159683763C>T	uc001ftw.2	-	2	331	c.227G>A	c.(226-228)AGA>AAA	p.R76K	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_5'Flank	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	76	Pentaxin.			YSIFSYATKRQDNEIL -> TVFSRMPPRDKTMRFF (in Ref. 4; CAA39671).	acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	ATTGTCTTGTCTCTTGGTGGC	0.448													72	66					0	0	0.003610	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799816	159799816	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:159799816C>T	uc001fue.3	+	2	411	c.201C>T	c.(199-201)TCC>TCT	p.S67S		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	67	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					TCCGAGGCTCCCTGGAGACTC	0.632													35	186					0	0	0.005524	0	0
VSIG8	391123	broad.mit.edu	37	1	159827966	159827966	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:159827966T>C	uc001fuh.2	-	3	480	c.344A>G	c.(343-345)AAC>AGC	p.N115S	C1orf204_uc001fug.1_5'Flank	NM_001013661	NP_001013683	Q5VU13	VSIG8_HUMAN	V-set and immunoglobulin domain containing 8	115	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				central_nervous_system(1)	1	all_hematologic(112;0.0597)					TACCTGCAGGTTCATGAGGTT	0.557													60	51					0	0	0.003610	0	0
IGSF9	57549	broad.mit.edu	37	1	159897575	159897575	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:159897575G>A	uc001fur.2	-	20	3531	c.3333C>T	c.(3331-3333)CTC>CTT	p.L1111L	IGSF9_uc001fuq.2_Silent_p.L1095L|CCDC19_uc001ful.2_5'Flank|TAGLN2_uc001fun.1_5'Flank|TAGLN2_uc001fuo.1_5'Flank|TAGLN2_uc010piy.1_5'Flank|IGSF9_uc001fup.2_Silent_p.L257L	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	1111	Cytoplasmic (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CTTCAGGTCTGAGCCGGGAGC	0.592													29	81					0	0	0.001061	0	0
SLAMF7	57823	broad.mit.edu	37	1	160720162	160720162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:160720162C>T	uc001fwq.2	+	4	733	c.718C>T	c.(718-720)CTC>TTC	p.L240F	SLAMF7_uc010pjn.1_Missense_Mutation_p.L146F|SLAMF7_uc001fws.2_Missense_Mutation_p.L133F|SLAMF7_uc001fwr.2_Missense_Mutation_p.L240F|SLAMF7_uc010pjo.1_Intron|SLAMF7_uc010pjp.1_Intron|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Intron	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	240	Helical; (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CCTGCTCAGTCTCTTTGTACT	0.502													46	219					0	0	0.003214	0	0
PPOX	5498	broad.mit.edu	37	1	161140245	161140245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:161140245G>A	uc001fyj.2	+	10	1324	c.1034G>A	c.(1033-1035)GGA>GAA	p.G345E	PPOX_uc001fyn.2_Intron|PPOX_uc001fyg.2_Missense_Mutation_p.G345E|PPOX_uc001fyl.2_Missense_Mutation_p.G311E|PPOX_uc001fym.2_RNA|PPOX_uc001fyk.2_Missense_Mutation_p.G183E|PPOX_uc001fyh.2_Missense_Mutation_p.G183E|PPOX_uc010pkg.1_Missense_Mutation_p.G183E|PPOX_uc009wuc.1_Intron|PPOX_uc010pkh.1_Missense_Mutation_p.G90E|PPOX_uc001fyi.2_Missense_Mutation_p.G183E	NM_001122764	NP_001116236	P50336	PPOX_HUMAN	protoporphyrinogen oxidase	345					heme biosynthetic process	intrinsic to mitochondrial inner membrane|mitochondrial intermembrane space	flavin adenine dinucleotide binding|oxygen-dependent protoporphyrinogen oxidase activity			ovary(1)	1	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GGAGTCCTGGGAATCGTGTAT	0.537									Porphyria_Variegata				24	121					0	0	0.001786	0	0
NR1I3	9970	broad.mit.edu	37	1	161203020	161203020	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:161203020G>T	uc001fzx.2	-	4	550	c.347C>A	c.(346-348)ACA>AAA	p.T116K	TOMM40L_uc009wuf.1_Intron|NR1I3_uc001fzf.2_Missense_Mutation_p.T116K|NR1I3_uc001fzg.2_Missense_Mutation_p.T87K|NR1I3_uc001fzh.2_Missense_Mutation_p.T87K|NR1I3_uc001fzi.2_Missense_Mutation_p.T87K|NR1I3_uc001fzj.2_Missense_Mutation_p.T87K|NR1I3_uc001fzk.2_Missense_Mutation_p.T87K|NR1I3_uc001fzl.2_Missense_Mutation_p.T87K|NR1I3_uc001fzm.2_Missense_Mutation_p.T41K|NR1I3_uc001fzn.2_Intron|NR1I3_uc009wug.2_Intron|NR1I3_uc001fzp.2_Missense_Mutation_p.T116K|NR1I3_uc001fzo.2_Intron|NR1I3_uc001fzq.2_Intron|NR1I3_uc001fzr.2_Intron|NR1I3_uc001fzs.2_Intron|NR1I3_uc001fzt.2_Intron|NR1I3_uc001fzu.2_Intron|NR1I3_uc001fzv.2_Intron|NR1I3_uc001fzw.2_Missense_Mutation_p.T116K|NR1I3_uc001fzy.2_Missense_Mutation_p.T116K|NR1I3_uc001fzz.2_Missense_Mutation_p.T116K|NR1I3_uc001gaa.2_Missense_Mutation_p.T116K|NR1I3_uc001gab.2_Missense_Mutation_p.T116K|NR1I3_uc001gac.2_Missense_Mutation_p.T87K|NR1I3_uc010pkm.1_Missense_Mutation_p.T87K|NR1I3_uc010pkn.1_Missense_Mutation_p.T116K	NM_001077480	NP_001070948	Q14994	NR1I3_HUMAN	constitutive androstane receptor isoform 2	116					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	androgen receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(1)|skin(1)	2	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CCCCAGGAGTGTCCGGATCAG	0.567													30	157					1.75199e-13	3.44602e-13	0.001271	1	0
C1orf110	339512	broad.mit.edu	37	1	162824779	162824779	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:162824779T>C	uc001gck.2	-	4	860	c.685A>G	c.(685-687)AAA>GAA	p.K229E	C1orf110_uc009wuw.1_Intron|C1orf110_uc009wux.1_Missense_Mutation_p.K228E	NM_178550	NP_848645	Q86UF4	CA110_HUMAN	hypothetical protein LOC339512	229											0						TCCATGTGTTTTGGGGGAATT	0.473													45	30					0	0	0.002222	0	0
DUSP27	92235	broad.mit.edu	37	1	167064132	167064132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:167064132G>A	uc001geb.1	+	1	46	c.46G>A	c.(46-48)GAG>AAG	p.E16K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	16					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AGTCCCAAGCGAGGAGGACGA	0.572													14	18					0	0	0.006122	0	0
C1orf156	92342	broad.mit.edu	37	1	169761910	169761910	+	Silent	SNP	G	A	A	rs34396097	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:169761910G>A	uc001ggn.2	-	2	1205	c.927C>T	c.(925-927)TTC>TTT	p.F309F	C1orf112_uc001ggj.2_Intron|C1orf112_uc001ggo.2_5'Flank|uc010plt.1_5'Flank|C1orf112_uc001ggp.2_5'Flank|C1orf112_uc001ggq.2_5'Flank	NM_033418	NP_219486	O95568	MET18_HUMAN	hypothetical protein MGC9084	309						cytoplasm	protein methyltransferase activity				0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACAGTCTAAGGAAAGTCTGGT	0.348													32	32					0	0	0.001512	0	0
FMO1	2326	broad.mit.edu	37	1	171254618	171254618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:171254618G>A	uc009wvz.2	+	9	1670	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	FMO1_uc010pme.1_Missense_Mutation_p.E449K|FMO1_uc001ghl.2_Missense_Mutation_p.E512K|FMO1_uc001ghm.2_Missense_Mutation_p.E512K|FMO1_uc001ghn.2_3'UTR	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	512					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATCTCCCTTTGAAAGTTTTCT	0.408													15	40					0	0	0.000958	0	0
DNM3	26052	broad.mit.edu	37	1	171956893	171956893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:171956893G>A	uc001gie.2	+	3	509	c.333G>A	c.(331-333)ATG>ATA	p.M111I	DNM3_uc001gid.3_Missense_Mutation_p.M111I|DNM3_uc009wwb.2_Missense_Mutation_p.M111I|DNM3_uc001gif.2_Missense_Mutation_p.M111I	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	111					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						TGACTGGAATGAATAAAGGCA	0.353													94	80					0	0	0.003610	0	0
SLC9A11	284525	broad.mit.edu	37	1	173503730	173503730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:173503730G>A	uc001giz.2	-	16	2290	c.1867C>T	c.(1867-1869)CCT>TCT	p.P623S	SLC9A11_uc009wwe.2_Missense_Mutation_p.P181S|SLC9A11_uc010pmq.1_Intron	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	623	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ATTATCATAGGATAAATATAT	0.259													43	39					0	0	0.002522	0	0
SLC9A11	284525	broad.mit.edu	37	1	173526623	173526623	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:173526623G>A	uc001giz.2	-	10	1494	c.1071C>T	c.(1069-1071)AGC>AGT	p.S357S	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	357					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TCAAAATAGGGCTCACTAACA	0.338													146	109					0	0	0.003610	0	0
SLC9A11	284525	broad.mit.edu	37	1	173567069	173567069	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:173567069A>C	uc001giz.2	-	4	754	c.331T>G	c.(331-333)TAT>GAT	p.Y111D	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	111					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TTGAGTGTATAAAATTCTACA	0.318													5	190					0	0	0.000602	0	0
MRPS14	63931	broad.mit.edu	37	1	174983953	174983953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:174983953C>T	uc001gkk.2	-	3	256	c.239G>A	c.(238-240)CGG>CAG	p.R80Q	MRPS14_uc009wwr.2_Missense_Mutation_p.R65Q	NM_022100	NP_071383	O60783	RT14_HUMAN	mitochondrial ribosomal protein S14	80					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						ACAGCTATCCCGGGGGAGGGC	0.483													32	161					0	0	0.003755	0	0
TNN	63923	broad.mit.edu	37	1	175053062	175053062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:175053062G>A	uc001gkl.1	+	5	1338	c.1225G>A	c.(1225-1227)GAC>AAC	p.D409N	TNN_uc010pmx.1_Missense_Mutation_p.D409N	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	409	Fibronectin type-III 2.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GAGCCGATATGACATCACTGG	0.537													18	63					0	0	0.000958	0	0
TNN	63923	broad.mit.edu	37	1	175096176	175096176	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:175096176C>T	uc001gkl.1	+	13	3113	c.3000C>T	c.(2998-3000)ATC>ATT	p.I1000I		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1000	Fibronectin type-III 9.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTGCTCAGATCCACGGCTACA	0.517													53	59					0	0	0.003610	0	0
TNR	7143	broad.mit.edu	37	1	175323626	175323626	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:175323626G>A	uc001gkp.1	-	16	3364	c.3283C>T	c.(3283-3285)CGA>TGA	p.R1095*	TNR_uc009wwu.1_Nonsense_Mutation_p.R1095*	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1095	Fibronectin type-III 9.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCCTCCAGTCGAATCCAGGTG	0.552													50	48					0	0	0.003610	0	0
TNR	7143	broad.mit.edu	37	1	175332919	175332919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:175332919C>T	uc001gkp.1	-	11	2713	c.2632G>A	c.(2632-2634)GAC>AAC	p.D878N	TNR_uc009wwu.1_Missense_Mutation_p.D878N	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	878	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ATCACTGAGTCCTTGGTCACA	0.433													24	85					0	0	0.005443	0	0
TNR	7143	broad.mit.edu	37	1	175362950	175362950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:175362950G>A	uc001gkp.1	-	4	1403	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F	TNR_uc009wwu.1_Missense_Mutation_p.S441F|TNR_uc010pmz.1_3'UTR	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	441	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCCATCGAAGGAAAATGAGAA	0.458													51	181					0	0	0.003610	0	0
TNR	7143	broad.mit.edu	37	1	175372522	175372522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:175372522G>A	uc001gkp.1	-	2	811	c.730C>T	c.(730-732)CTC>TTC	p.L244F	TNR_uc009wwu.1_Missense_Mutation_p.L244F|TNR_uc010pmz.1_Missense_Mutation_p.L244F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	244	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCCACGCAGAGCCCCCGGGAG	0.642													51	32					0	0	0.003610	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525628	176525628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:176525628G>A	uc001gkz.2	+	2	1334	c.170G>A	c.(169-171)CGA>CAA	p.R57Q	PAPPA2_uc001gky.1_Missense_Mutation_p.R57Q|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	57					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCCAAGGTTCGAAGACCCAGA	0.562													108	70					0	0	0.003610	0	0
FAM5B	57795	broad.mit.edu	37	1	177250269	177250269	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:177250269C>T	uc001glf.2	+	8	2269	c.1957C>T	c.(1957-1959)CTG>TTG	p.L653L	FAM5B_uc001glg.2_Silent_p.L548L	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	653						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AATCAAGTCCCTGGATGACAG	0.463													25	83					0	0	0.003954	0	0
RASAL2	9462	broad.mit.edu	37	1	178420757	178420757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:178420757C>T	uc001glr.2	+	8	1360	c.1235C>T	c.(1234-1236)CCC>CTC	p.P412L	RASAL2_uc001glq.2_Missense_Mutation_p.P560L|RASAL2_uc009wxc.2_5'Flank	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	412	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						GAAGTGGATCCCAGCAAATGT	0.423													50	44					0	0	0.003610	0	0
RASAL2	9462	broad.mit.edu	37	1	178442335	178442335	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:178442335C>T	uc001glr.2	+	16	3506	c.3381C>T	c.(3379-3381)TCC>TCT	p.S1127S	RASAL2_uc001glq.2_Silent_p.S1268S|RASAL2_uc009wxc.2_Missense_Mutation_p.H652Y	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	1127					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						CCAAGCTTTCCATCACGGAGA	0.542													39	27					0	0	0.002522	0	0
CEP350	9857	broad.mit.edu	37	1	180063583	180063583	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:180063583C>T	uc001gnt.2	+	34	8726	c.8343C>T	c.(8341-8343)ATC>ATT	p.I2781I	CEP350_uc009wxl.2_Silent_p.I2780I|CEP350_uc001gnv.2_Silent_p.I916I|CEP350_uc001gnw.1_Silent_p.I538I|CEP350_uc001gnx.1_Silent_p.I538I	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2781						centrosome|nucleus|spindle				ovary(4)	4						ATGAGAAAATCCAGCTTAGCA	0.388													27	20					0	0	0.001061	0	0
LHX4	89884	broad.mit.edu	37	1	180241035	180241035	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:180241035G>C	uc001goe.1	+	5	895	c.672G>C	c.(670-672)TGG>TGC	p.W224C	uc001gof.1_RNA	NM_033343	NP_203129	Q969G2	LHX4_HUMAN	LIM homeobox protein 4	224						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGCACCGCTGGGGGCAGTTCT	0.577													18	101					0	0	0.004990	0	0
CACNA1E	777	broad.mit.edu	37	1	181689432	181689432	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:181689432C>T	uc001gow.2	+	14	2007	c.1842C>T	c.(1840-1842)ATC>ATT	p.I614I	CACNA1E_uc009wxs.2_Silent_p.I521I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	614	Helical; Name=S5 of repeat II.|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCCTCTTCATCGTTGTCTTTG	0.468													7	44					0	0	0.001984	0	0
RNASEL	6041	broad.mit.edu	37	1	182555534	182555534	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:182555534A>G	uc001gpj.1	-	1	575	c.408T>C	c.(406-408)GGT>GGC	p.G136G	RNASEL_uc009wxz.1_Silent_p.G136G|RNASEL_uc001gpk.2_Silent_p.G136G|RNASEL_uc009wya.1_Silent_p.G136G	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	136	ANK 4.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						CTTTGACCTTACCATACACAG	0.458									Hereditary_Prostate_Cancer				27	33					0	0	0.001512	0	0
RGS16	6004	broad.mit.edu	37	1	182571242	182571242	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:182571242G>A	uc001gpl.3	-	4	400	c.246C>T	c.(244-246)TTC>TTT	p.F82F	RGS16_uc010pnv.1_Silent_p.F82F	NM_002928	NP_002919	O15492	RGS16_HUMAN	regulator of G-protein signalling 16	82	RGS.				negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(1)	1						CTGTCTTCAGGAAAGCGTGGA	0.537											OREG0014036	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	96	68					0	0	0.003610	0	0
SMG7	9887	broad.mit.edu	37	1	183506317	183506317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:183506317C>T	uc001gqg.2	+	11	1323	c.1201C>T	c.(1201-1203)CAT>TAT	p.H401Y	SMG7_uc010pob.1_Missense_Mutation_p.H430Y|SMG7_uc001gqf.2_Missense_Mutation_p.H401Y|SMG7_uc001gqh.2_Missense_Mutation_p.H401Y|SMG7_uc001gqi.2_Missense_Mutation_p.H359Y|SMG7_uc010poc.1_Missense_Mutation_p.H359Y	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	401					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GAATAGTTTCCATCCCCATGA	0.388													23	100					0	0	0.001512	0	0
EDEM3	80267	broad.mit.edu	37	1	184663275	184663275	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:184663275G>A	uc010pok.1	-	20	2982	c.2721C>T	c.(2719-2721)GTC>GTT	p.V907V	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Silent_p.V923V	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	907					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						CTATAGGCTGGACCTTTTTAC	0.373													17	14					0	0	0.004007	0	0
FAM5C	339479	broad.mit.edu	37	1	190067807	190067807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:190067807G>A	uc001gse.1	-	8	1874	c.1642C>T	c.(1642-1644)CAT>TAT	p.H548Y	FAM5C_uc010pot.1_Missense_Mutation_p.H446Y	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	548						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAAATCATATGGACCAGACTT	0.468													83	63					0	0	0.003610	0	0
KCNT2	343450	broad.mit.edu	37	1	196438197	196438197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:196438197C>T	uc001gtd.1	-	6	446	c.386G>A	c.(385-387)GGA>GAA	p.G129E	KCNT2_uc009wyt.1_5'Flank|KCNT2_uc001gte.1_Missense_Mutation_p.G129E|KCNT2_uc001gtf.1_Missense_Mutation_p.G129E|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.G129E|KCNT2_uc009wyv.1_Intron	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	129	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CCAGATGTTTCCCTTCCAAGA	0.343													4	11					0	0	0.000248	0	0
CFHR1	3078	broad.mit.edu	37	1	196800955	196800955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:196800955G>A	uc001gtn.2	+	6	933	c.819G>A	c.(817-819)ATG>ATA	p.M273I	CFHR1_uc001gtm.2_Missense_Mutation_p.M177I	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	273	Sushi 5.				complement activation	extracellular space					0						GAGAAATTATGGAAAATTATA	0.333													20	14					0	0	0.003330	0	0
CRB1	23418	broad.mit.edu	37	1	197390751	197390751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:197390751C>T	uc001gtz.2	+	6	1928	c.1793C>T	c.(1792-1794)CCA>CTA	p.P598L	CRB1_uc010poz.1_Missense_Mutation_p.P529L|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.P486L|CRB1_uc010ppb.1_Missense_Mutation_p.P598L|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.P79L|CRB1_uc001gub.1_Missense_Mutation_p.P247L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	598	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GCTCCTACTCCACTTGAAAGT	0.448													19	86					0	0	0.000958	0	0
PTPRC	5788	broad.mit.edu	37	1	198685930	198685930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:198685930G>A	uc001gur.1	+	13	1585	c.1405G>A	c.(1405-1407)GGA>AGA	p.G469R	PTPRC_uc001gus.1_Missense_Mutation_p.G421R|PTPRC_uc001gut.1_Missense_Mutation_p.G308R|PTPRC_uc009wzf.1_Missense_Mutation_p.G357R|PTPRC_uc010ppg.1_Missense_Mutation_p.G405R	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	469	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GCAACGTAATGGAAGTGCTGC	0.303													17	70					0	0	0.001523	0	0
ZNF281	23528	broad.mit.edu	37	1	200377283	200377283	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:200377283G>A	uc001gve.2	-	2	1658	c.1551C>T	c.(1549-1551)CTC>CTT	p.L517L	ZNF281_uc001gvf.1_Silent_p.L517L|ZNF281_uc001gvg.1_Silent_p.L481L	NM_012482	NP_036614	Q9Y2X9	ZN281_HUMAN	zinc finger protein 281	517					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)	2						TTGTACTTTGGAGAAGACCAA	0.398													33	140					0	0	0.001485	0	0
ZNF281	23528	broad.mit.edu	37	1	200377285	200377285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:200377285G>A	uc001gve.2	-	2	1656	c.1549C>T	c.(1549-1551)CTC>TTC	p.L517F	ZNF281_uc001gvf.1_Missense_Mutation_p.L517F|ZNF281_uc001gvg.1_Missense_Mutation_p.L481F	NM_012482	NP_036614	Q9Y2X9	ZN281_HUMAN	zinc finger protein 281	517					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)	2						GTACTTTGGAGAAGACCAATG	0.398													35	145					0	0	0.001706	0	0
C1orf106	55765	broad.mit.edu	37	1	200869303	200869303	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:200869303G>A	uc001gvo.2	+	4	537	c.507G>A	c.(505-507)AGG>AGA	p.R169R	C1orf106_uc010ppm.1_Silent_p.R84R	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	169										skin(2)|ovary(1)	3						TTCGCCGCAGGATCGGAGCGG	0.607													27	23					0	0	0.001786	0	0
CACNA1S	779	broad.mit.edu	37	1	201035026	201035026	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:201035026G>A	uc001gvv.2	-	22	3020	c.2793C>T	c.(2791-2793)ATC>ATT	p.I931I		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	931	Helical; Name=S5 of repeat III; (Potential).|III.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGACCAGCACGATGTTCCCGA	0.632													18	26					0	0	0.001216	0	0
IGFN1	91156	broad.mit.edu	37	1	201186546	201186546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:201186546G>A	uc001gwc.2	+	6	1979	c.1207G>A	c.(1207-1209)GGG>AGG	p.G403R	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GCGTAAGAAGGGGAGCAACAC	0.642													25	76					0	0	0.001061	0	0
LGR6	59352	broad.mit.edu	37	1	202287604	202287604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:202287604G>A	uc001gxu.2	+	18	2173	c.2173G>A	c.(2173-2175)GGT>AGT	p.G725S	LGR6_uc001gxv.2_Missense_Mutation_p.G673S|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.G586S	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	725	Extracellular (Potential).		G -> C (in a colorectal cancer sample; somatic mutation).			integral to membrane|plasma membrane	protein-hormone receptor activity	p.G725C(1)		large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GCCACCTGAGGGTCAGCCAGC	0.657													18	11					0	0	0.001523	0	0
KDM5B	10765	broad.mit.edu	37	1	202719899	202719899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:202719899C>T	uc001gyf.2	-	13	1825	c.1709G>A	c.(1708-1710)CGA>CAA	p.R570Q	KDM5B_uc009xag.2_Missense_Mutation_p.R606Q|KDM5B_uc001gyg.1_Missense_Mutation_p.R412Q	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	570	JmjC.				negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CTGATTAGTTCGGTAAACCTA	0.363													57	72					0	0	0.003610	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204218005	204218005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:204218005C>T	uc001hau.2	-	12	2085	c.1768G>A	c.(1768-1770)GAT>AAT	p.D590N		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	590										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			TGCAGTGAATCCTTTTTGTGT	0.582													12	49					0	0	0.003163	0	0
SLC41A1	254428	broad.mit.edu	37	1	205760769	205760769	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:205760769G>A	uc001hdh.1	-	11	2306	c.1434C>T	c.(1432-1434)TCC>TCT	p.S478S	SLC41A1_uc001hdg.1_Silent_p.S99S	NM_173854	NP_776253	Q8IVJ1	S41A1_HUMAN	solute carrier family 41 member 1	478						integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			skin(2)	2	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			AGTATGGGATGGAGAAGTTGT	0.602											OREG0014162	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	22					0	0	0.002522	0	0
IKBKE	9641	broad.mit.edu	37	1	206651542	206651542	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:206651542C>T	uc001hdz.1	+	9	1220	c.852C>T	c.(850-852)ATC>ATT	p.I284I	IKBKE_uc009xbu.1_3'UTR|IKBKE_uc009xbv.1_Silent_p.I284I|IKBKE_uc001hea.1_Silent_p.I199I	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	284	Protein kinase.				DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					TGGCCAACATCCTGGAGGTGG	0.622													33	31					0	0	0.002445	0	0
CR2	1380	broad.mit.edu	37	1	207643325	207643325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:207643325G>A	uc001hfw.2	+	6	1197	c.1103G>A	c.(1102-1104)CGA>CAA	p.R368Q	CR2_uc001hfv.2_Missense_Mutation_p.R368Q|CR2_uc009xch.2_Missense_Mutation_p.R368Q|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	368	Sushi 6.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CAGAAAGATCGATATACCTAT	0.512													13	11					0	0	0.003163	0	0
MIR205	406988	broad.mit.edu	37	1	209605512	209605512	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:209605512C>T	hsa-mir-205|MI0000285	+			c.35C>T			LOC642587_uc009xcn.2_Intron|LOC642587_uc010psk.1_RNA																	0						CTTCTCTTGTCCTTCATTCCA	0.463													14	70					0	0	0.004990	0	0
FAM71A	149647	broad.mit.edu	37	1	212799628	212799628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:212799628G>A	uc001hjk.2	+	1	1813	c.1409G>A	c.(1408-1410)AGA>AAA	p.R470K	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	470										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		AGAGCCAATAGAGATGACAAA	0.562													20	82					0	0	0.001882	0	0
PROX1	5629	broad.mit.edu	37	1	214170240	214170240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:214170240C>T	uc001hkh.2	+	2	634	c.362C>T	c.(361-363)TCC>TTC	p.S121F	PROX1_uc001hkg.1_Missense_Mutation_p.S121F	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	121					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		AGTACAGGCTCCGAAGTACAT	0.488													106	82					0	0	0.003610	0	0
PTPN14	5784	broad.mit.edu	37	1	214576224	214576224	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:214576224A>G	uc001hkk.1	-	6	852	c.581_splice	c.e6+1	p.S194_splice	PTPN14_uc010pty.1_Splice_Site_p.S95_splice	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type						lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		TGCCTGCCTTACCTGTGGGCT	0.537													97	88					0	0	0.003610	0	0
HHIPL2	79802	broad.mit.edu	37	1	222712020	222712020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:222712020C>T	uc001hnh.1	-	5	1605	c.1547G>A	c.(1546-1548)GGC>GAC	p.G516D		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	516					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		GATATACAGGCCATTGAGATT	0.378													88	368					0	0	0.003610	0	0
TLR5	7100	broad.mit.edu	37	1	223285675	223285675	+	Silent	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:223285675A>C	uc001hnv.1	-	4	1145	c.699T>G	c.(697-699)GTT>GTG	p.V233V	TLR5_uc001hnw.1_Silent_p.V233V	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	233	Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		CATTTCCAGAAACATCTAGTA	0.458													64	57					0	0	0.003610	0	0
WNT3A	89780	broad.mit.edu	37	1	228238512	228238512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:228238512G>A	uc001hrq.1	+	3	547	c.469G>A	c.(469-471)GAG>AAG	p.E157K	WNT3A_uc001hrp.1_Missense_Mutation_p.E157K	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	157					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				TGGCTGTAGCGAGGACATCGA	0.652													44	29					0	0	0.003610	0	0
URB2	9816	broad.mit.edu	37	1	229772297	229772297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:229772297C>T	uc001hts.1	+	4	2073	c.1937C>T	c.(1936-1938)TCG>TTG	p.S646L	URB2_uc009xfd.1_Missense_Mutation_p.S646L	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	646						nucleolus				central_nervous_system(2)|ovary(1)	3						AACCTCCCTTCGTTGCTCCCA	0.478													81	288					0	0	0.003610	0	0
CAPN9	10753	broad.mit.edu	37	1	230898473	230898473	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:230898473C>T	uc001htz.1	+	4	590	c.477C>T	c.(475-477)TTC>TTT	p.F159F	CAPN9_uc009xfg.1_Silent_p.F96F|CAPN9_uc001hua.1_Silent_p.F159F	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	159	Calpain catalytic.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				GCTTGGTTTTCCTCCACTCTG	0.582													37	34					0	0	0.004878	0	0
KIAA1804	84451	broad.mit.edu	37	1	233511738	233511738	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:233511738G>A	uc001hvt.3	+	7	2013	c.1752G>A	c.(1750-1752)AGG>AGA	p.R584R	KIAA1804_uc001hvu.3_Silent_p.R30R	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	584					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				ATGTAAAAAGGAATTTTAAGA	0.348													16	69					0	0	0.003163	0	0
KIAA1804	84451	broad.mit.edu	37	1	233515271	233515271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:233515271C>T	uc001hvt.3	+	9	2780	c.2519C>T	c.(2518-2520)CCC>CTC	p.P840L	KIAA1804_uc001hvu.3_Missense_Mutation_p.P286L	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	840					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GATTTTTGTCCCACTGCCCCA	0.517													19	71					0	0	0.003330	0	0
KCNK1	3775	broad.mit.edu	37	1	233802528	233802528	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:233802528C>T	uc010pxo.1	+	2	711	c.543C>T	c.(541-543)ATC>ATT	p.I181I	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	181	Helical; (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TGGTGGCCATCGTCCATGCCG	0.602													50	35					0	0	0.003610	0	0
NID1	4811	broad.mit.edu	37	1	236192896	236192896	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:236192896G>A	uc001hxo.2	-	7	1794	c.1692C>T	c.(1690-1692)TCC>TCT	p.S564S	NID1_uc009xgd.2_Silent_p.S564S	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	564	Nidogen G2 beta-barrel.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	CAATGTGCACGGAGGAGCCGA	0.642													6	14					0	0	0.001168	0	0
C1orf101	257044	broad.mit.edu	37	1	244736006	244736006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:244736006C>T	uc001iam.2	+	11	1941	c.1882C>T	c.(1882-1884)CCA>TCA	p.P628S	C1orf101_uc001iak.1_Missense_Mutation_p.P182S|C1orf101_uc001ial.2_Missense_Mutation_p.P628S|C1orf101_uc010pym.1_Missense_Mutation_p.P477S|C1orf101_uc010pyn.1_Missense_Mutation_p.P561S	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	628	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			ATCTTATGGCCCAAAAATATT	0.368													37	34					0	0	0.001485	0	0
NLRP3	114548	broad.mit.edu	37	1	247588508	247588508	+	Missense_Mutation	SNP	G	A	A	rs142624094		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:247588508G>A	uc001icr.2	+	5	1901	c.1763G>A	c.(1762-1764)AGG>AAG	p.R588K	NLRP3_uc001ics.2_Missense_Mutation_p.R588K|NLRP3_uc001icu.2_Missense_Mutation_p.R588K|NLRP3_uc001icw.2_Missense_Mutation_p.R588K|NLRP3_uc001icv.2_Missense_Mutation_p.R588K|NLRP3_uc010pyw.1_Missense_Mutation_p.R586K|NLRP3_uc001ict.1_Missense_Mutation_p.R586K	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	588					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AACCAGGAGAGGACCTCCTAC	0.438													61	38					0	0	0.003610	0	0
NLRP3	114548	broad.mit.edu	37	1	247599428	247599428	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:247599428C>T	uc001icr.2	+	8	2793	c.2655C>T	c.(2653-2655)AAC>AAT	p.N885N	NLRP3_uc001ics.2_Intron|NLRP3_uc001icu.2_Silent_p.N885N|NLRP3_uc001icw.2_Silent_p.N828N|NLRP3_uc001icv.2_Intron|NLRP3_uc010pyw.1_Silent_p.N863N	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	885	LRR 6.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CACAGTGTAACCTGCAGAAAC	0.453													11	58					0	0	0.000673	0	0
OR2B11	127623	broad.mit.edu	37	1	247614961	247614961	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:247614961G>A	uc010pyx.1	-	1	324	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			CCAGCCAGTGGAAGACTGCAT	0.592													41	32					0	0	0.002852	0	0
OR13G1	441933	broad.mit.edu	37	1	247835467	247835467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:247835467C>T	uc001idi.1	-	1	877	c.877G>A	c.(877-879)GAG>AAG	p.E293K		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GCCTGCATCTCCCTATTCTGG	0.433													25	25					0	0	0.003954	0	0
OR2W3	343171	broad.mit.edu	37	1	248059194	248059194	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:248059194C>T	uc001idp.1	+	3	575	c.306C>T	c.(304-306)TTC>TTT	p.F102F	OR2W3_uc010pzb.1_Silent_p.F102F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TCCAGCTCTTCCTGTTCCTGG	0.557													14	83					0	0	0.004007	0	0
OR2L2	26246	broad.mit.edu	37	1	248202403	248202403	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:248202403C>T	uc001idw.2	+	1	930	c.834C>T	c.(832-834)ACC>ACT	p.T278T	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTTTCTACACCATCCTCACCC	0.473													27	50					0	0	0.001271	0	0
OR2L2	26246	broad.mit.edu	37	1	248202499	248202499	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:248202499G>A	uc001idw.2	+	1	1026	c.930G>A	c.(928-930)GTG>GTA	p.V310V	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TCTTCTCAGTGAAAATGTAGA	0.438													25	35					0	0	0.001512	0	0
OR2L13	284521	broad.mit.edu	37	1	248263568	248263568	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:248263568G>A	uc001ids.2	+	3	1228	c.891G>A	c.(889-891)CTG>CTA	p.L297L		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			AGGAAGTCCTGGGGGCTATGA	0.473													25	16					0	0	0.001271	0	0
OR2M5	127059	broad.mit.edu	37	1	248308997	248308997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:248308997C>T	uc010pze.1	+	1	548	c.548C>T	c.(547-549)TCC>TTC	p.S183F		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GACTTCCCTTCCCTACTAATC	0.418													25	136					0	0	0.003330	0	0
OR14C36	127066	broad.mit.edu	37	1	248512232	248512232	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:248512232C>T	uc010pzl.1	+	1	156	c.156C>T	c.(154-156)AGC>AGT	p.S52S		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GTGACAGCAGCCTTCACATGC	0.443													21	80					0	0	0.001882	0	0
OR2T11	127077	broad.mit.edu	37	1	248789505	248789505	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:248789505G>A	uc001ier.1	-	1	925	c.925C>T	c.(925-927)CAG>TAG	p.Q309*		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCTACTTTCTGAGCAGATGAG	0.463													20	74					0	0	0.002299	0	0
DIP2C	22982	broad.mit.edu	37	10	409160	409160	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:409160G>A	uc001ifp.2	-	21	2659	c.2569C>T	c.(2569-2571)CAG>TAG	p.Q857*	DIP2C_uc009xhi.1_Nonsense_Mutation_p.Q243*|DIP2C_uc010pzz.1_Nonsense_Mutation_p.Q178*	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	857						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CTCATCCACTGGAAACTGTCC	0.597													5	17					0	0	0.000602	0	0
LARP4B	23185	broad.mit.edu	37	10	930436	930436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:930436G>A	uc001ifs.1	-	2	133	c.92C>T	c.(91-93)CCT>CTT	p.P31L		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	31							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						TTGAGATATAGGACCATTCAT	0.328													11	25					0	0	0.000978	0	0
GTPBP4	23560	broad.mit.edu	37	10	1042121	1042121	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:1042121C>T	uc001ift.2	+	4	470	c.399C>T	c.(397-399)GCC>GCT	p.A133A	GTPBP4_uc010qac.1_5'UTR|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Silent_p.A17A|GTPBP4_uc010qae.1_Silent_p.A86A	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	133					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		AGCGTGCGGCCCTGGGACGGA	0.478													4	18					0	0	0.000248	0	0
CALML3	810	broad.mit.edu	37	10	5567393	5567393	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:5567393G>A	uc001iie.1	+	1	470	c.345G>A	c.(343-345)GAG>GAA	p.E115E	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	115	EF-hand 3.						calcium ion binding				0						GGCTGGGGGAGAAGCTGAGTG	0.647													4	18					0	0	0.000602	0	0
PRKCQ	5588	broad.mit.edu	37	10	6470206	6470206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:6470206G>A	uc001ijj.1	-	18	2159	c.2084C>T	c.(2083-2085)TCC>TTC	p.S695F	PRKCQ_uc009xim.1_Missense_Mutation_p.S632F|PRKCQ_uc001iji.1_Missense_Mutation_p.S728F|PRKCQ_uc009xin.1_Missense_Mutation_p.S659F|PRKCQ_uc010qax.1_Missense_Mutation_p.S570F	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	695	AGC-kinase C-terminal.			S->A: Reduction in kinase activity.	axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						GTTCATGAAGGAAAAGTTCCT	0.488													47	110					0	0	0.003610	0	0
PRKCQ	5588	broad.mit.edu	37	10	6553137	6553137	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:6553137G>A	uc001ijj.1	-	3	213	c.138C>T	c.(136-138)ATC>ATT	p.I46I	PRKCQ_uc009xim.1_Silent_p.I46I|PRKCQ_uc001iji.1_Silent_p.I79I|PRKCQ_uc009xin.1_Silent_p.I10I|PRKCQ_uc010qax.1_5'UTR	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	46	C2.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						GCTTTTTCTGGATATACATCT	0.453													6	39					0	0	0.003080	0	0
SFMBT2	57713	broad.mit.edu	37	10	7290601	7290601	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:7290601T>G	uc009xio.1	-	8	972	c.881A>C	c.(880-882)GAT>GCT	p.D294A	SFMBT2_uc001ijn.1_Missense_Mutation_p.D294A|SFMBT2_uc010qay.1_Missense_Mutation_p.D294A	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	294	MBT 3.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GCTTCGCAAATCTGCGTGATC	0.473													5	28					0	0	0.000602	0	0
ITIH5	80760	broad.mit.edu	37	10	7618458	7618458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:7618458C>T	uc001ijq.2	-	10	2015	c.1936G>A	c.(1936-1938)GAA>AAA	p.E646K	ITIH5_uc001ijp.2_Missense_Mutation_p.E432K|ITIH5_uc001ijr.1_Missense_Mutation_p.E646K	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	646					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ACCACCGGTTCGGGTCCCATG	0.682													5	14					0	0	0.001168	0	0
ITIH5	80760	broad.mit.edu	37	10	7697622	7697622	+	Missense_Mutation	SNP	G	A	A	rs139355305		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:7697622G>A	uc001ijq.2	-	2	186	c.107C>T	c.(106-108)CCG>CTG	p.P36L	ITIH5_uc001ijr.1_Missense_Mutation_p.P36L	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	36	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						GACTTGCCTCGGGACCCTGAG	0.403													15	59					0	0	0.006122	0	0
DHTKD1	55526	broad.mit.edu	37	10	12129721	12129721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:12129721C>T	uc001ild.3	+	4	809	c.710C>T	c.(709-711)CCT>CTT	p.P237L		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	237					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			CTGCAGTTCCCTCCAGAGGTA	0.448													77	161					0	0	0.003610	0	0
DHTKD1	55526	broad.mit.edu	37	10	12129723	12129723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:12129723C>T	uc001ild.3	+	4	811	c.712C>T	c.(712-714)CCA>TCA	p.P238S		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	238					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			GCAGTTCCCTCCAGAGGTAAG	0.448													71	152					0	0	0.003610	0	0
MCM10	55388	broad.mit.edu	37	10	13224992	13224992	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:13224992C>T	uc001ima.2	+	8	1094	c.993C>T	c.(991-993)TCC>TCT	p.S331S	MCM10_uc001imb.2_Silent_p.S330S|MCM10_uc001imc.2_Silent_p.S330S	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	331					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						AATGTGTGTCCTTGTTCTTAT	0.433													8	40					0	0	0.003080	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256408	15256408	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:15256408C>T	uc001iob.2	-	8	1186	c.1179G>A	c.(1177-1179)CTG>CTA	p.L393L		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	393	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CTCCACTCATCAGTTCCTTCG	0.602													12	33					0	0	0.001855	0	0
CUBN	8029	broad.mit.edu	37	10	17085910	17085910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:17085910G>A	uc001ioo.2	-	26	3797	c.3745C>T	c.(3745-3747)CGT>TGT	p.R1249C		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1249	CUB 7.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CCACTAGAACGAATAAGAGGG	0.428													9	29					0	0	0.004482	0	0
CACNB2	783	broad.mit.edu	37	10	18828250	18828250	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:18828250A>C	uc001ipr.2	+	14	1640	c.1580A>C	c.(1579-1581)AAA>ACA	p.K527T	CACNB2_uc009xjz.1_Missense_Mutation_p.K277T|CACNB2_uc001ips.2_Missense_Mutation_p.K503T|CACNB2_uc001ipt.2_Missense_Mutation_p.K489T|CACNB2_uc001ipu.2_Missense_Mutation_p.K499T|CACNB2_uc001ipv.2_Missense_Mutation_p.K475T|CACNB2_uc009xka.1_Missense_Mutation_p.K461T|CACNB2_uc001ipw.2_Missense_Mutation_p.K434T|CACNB2_uc001ipx.2_Missense_Mutation_p.K472T|CACNB2_uc001ipz.2_Missense_Mutation_p.K449T|CACNB2_uc001ipy.2_Missense_Mutation_p.K473T|CACNB2_uc010qco.1_Missense_Mutation_p.K441T|CACNB2_uc001iqa.2_Missense_Mutation_p.K479T|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	527					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCAGTCAAGAAATCCCAGCAC	0.567													8	31					0	0	0.000673	0	0
MYO3A	53904	broad.mit.edu	37	10	26434394	26434394	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:26434394G>A	uc001isn.2	+	22	2796	c.2436G>A	c.(2434-2436)CTG>CTA	p.L812L	MYO3A_uc009xko.1_Silent_p.L812L|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	812	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AAGGTAACCTGAAATCACAAT	0.313													11	22					0	0	0.000978	0	0
MKX	283078	broad.mit.edu	37	10	28030293	28030293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:28030293G>A	uc001ity.3	-	3	554	c.329C>T	c.(328-330)TCG>TTG	p.S110L	MKX_uc001itx.3_Missense_Mutation_p.S110L	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	110	Homeobox; TALE-type.				muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CGTCATCTGCGAGCCGAGGGC	0.582													23	47					0	0	0.003954	0	0
ZEB1	6935	broad.mit.edu	37	10	31816025	31816025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:31816025G>A	uc001ivs.3	+	9	3271	c.3208G>A	c.(3208-3210)GAA>AAA	p.E1070K	ZEB1_uc001ivr.3_Missense_Mutation_p.E852K|ZEB1_uc010qee.1_Missense_Mutation_p.E852K|ZEB1_uc010qef.1_Missense_Mutation_p.E852K|ZEB1_uc001ivt.3_Missense_Mutation_p.E852K|ZEB1_uc001ivu.3_Missense_Mutation_p.E1071K|ZEB1_uc001ivv.3_Missense_Mutation_p.E1050K|ZEB1_uc010qeh.1_Missense_Mutation_p.E1003K|ZEB1_uc009xlp.2_Missense_Mutation_p.E1054K	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	1070	Glu-rich (acidic).				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ggaggaggaggaagaagtgga	0.109													3	3					0	0	0.004672	0	0
PARD3	56288	broad.mit.edu	37	10	34606153	34606153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:34606153C>T	uc010qej.1	-	20	2956	c.2956G>A	c.(2956-2958)GAT>AAT	p.D986N	PARD3_uc010qek.1_Missense_Mutation_p.D983N|PARD3_uc010qel.1_Missense_Mutation_p.D986N|PARD3_uc010qem.1_Missense_Mutation_p.D970N|PARD3_uc010qen.1_Missense_Mutation_p.D940N|PARD3_uc010qeo.1_Missense_Mutation_p.D940N|PARD3_uc010qep.1_Missense_Mutation_p.D896N|PARD3_uc010qeq.1_Missense_Mutation_p.D911N|PARD3_uc001ixo.1_Missense_Mutation_p.D699N|PARD3_uc001ixp.1_Missense_Mutation_p.D817N|PARD3_uc001ixq.1_Missense_Mutation_p.D940N|PARD3_uc001ixr.1_Missense_Mutation_p.D983N|PARD3_uc001ixt.1_Missense_Mutation_p.D804N|PARD3_uc001ixu.1_Missense_Mutation_p.D928N|PARD3_uc001ixs.1_Missense_Mutation_p.D609N	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	986	Lys-rich.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				tcagtcttatcacctttctct	0.239													13	44					0	0	0.001855	0	0
RET	5979	broad.mit.edu	37	10	43623695	43623695	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:43623695T>A	uc001jal.2	+	20	3513	c.3323T>A	c.(3322-3324)TTA>TAA	p.L1108*		NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	1108	Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	GCGGCAAAATTAATGGACACG	0.428		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				6	61					0	0	0.001168	0	0
ZNF239	8187	broad.mit.edu	37	10	44052780	44052780	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:44052780G>A	uc001jaw.3	-	2	1401	c.748C>T	c.(748-750)CTG>TTG	p.L250L	ZNF239_uc001jax.3_Silent_p.L250L|ZNF239_uc009xmj.2_Silent_p.L250L|ZNF239_uc009xmk.2_Silent_p.L250L	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	250	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TGGATAAGCAGACTCGAGCTC	0.488													28	59					0	0	0.001271	0	0
Unknown	0	broad.mit.edu	37	10	44983865	44983865	+	RNA	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:44983865T>A	uc001jbj.1	-	1		c.26A>T								Homo sapiens map t(4;11)(q21;p15) NUP98-RAP1GDS1 fusion protein type 1 (NRG) mRNA, partial cds.																		TATCTTCAGCTTCTTCAAGGT	0.512													5	23					0	0	0.000602	0	0
RASSF4	83937	broad.mit.edu	37	10	45487389	45487389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:45487389G>A	uc001jbo.2	+	10	978	c.844G>A	c.(844-846)GAC>AAC	p.D282N	RASSF4_uc001jbp.2_Missense_Mutation_p.D313N|RASSF4_uc009xmn.2_Missense_Mutation_p.D212N|RASSF4_uc001jbq.2_Missense_Mutation_p.D179N|RASSF4_uc001jbt.2_Missense_Mutation_p.D239N	NM_032023	NP_114412	Q9H2L5	RASF4_HUMAN	Ras association domain family 4	282	SARAH.				cell cycle|signal transduction		protein binding			large_intestine(1)	1						GCCGGTGCTGGACAGTTTTGT	0.358													22	74					0	0	0.005443	0	0
OR13A1	79290	broad.mit.edu	37	10	45798957	45798957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:45798957G>A	uc001jcc.1	-	4	1223	c.914C>T	c.(913-915)CCC>CTC	p.P305L	OR13A1_uc001jcd.1_Missense_Mutation_p.P301L	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	305	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATAGATGAGGGGGTTGAGGGT	0.493													11	33					0	0	0.000978	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999365	46999365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:46999365C>T	uc001jec.2	+	3	620	c.485C>T	c.(484-486)TCT>TTT	p.S162F	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	162											0						GGTGGTACTTCTGGCCAGGGT	0.637													8	22					0	0	0.003080	0	0
RBP3	5949	broad.mit.edu	37	10	48390435	48390435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:48390435C>T	uc001jez.2	-	1	557	c.443G>A	c.(442-444)GGG>GAG	p.G148E		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	148	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CAGGAACTCCCCCATCATGCT	0.652													12	38					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	10	48902286	48902286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:48902286G>A	uc009xnv.2	-	3	693	c.587C>T	c.(586-588)GCC>GTC	p.A196V		NM_001077686	NP_001071154			ArfGAP with GTPase domain, ankyrin repeat and PH																		CTTTTTATTGGCATGAGGGGA	0.522													35	67					0	0	0.002836	0	0
FRMPD2	143162	broad.mit.edu	37	10	49381107	49381107	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:49381107G>A	uc001jgi.2	-	25	3212	c.3105C>T	c.(3103-3105)GTC>GTT	p.V1035V	FRMPD2_uc001jgh.2_Silent_p.V1003V|FRMPD2_uc001jgj.2_Silent_p.V1013V|FRMPD2L1_uc001jgf.2_Silent_p.V46V|FRMPD2_uc001jgg.2_5'UTR|FRMPD2_uc001jgk.2_5'UTR	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	1035	PDZ 2.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TACTCCTGGGGACTCTTCTCT	0.512													18	43					0	0	0.001271	0	0
FRMPD2	143162	broad.mit.edu	37	10	49395278	49395278	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:49395278G>A	uc001jgi.2	-	17	2330	c.2223C>T	c.(2221-2223)ACC>ACT	p.T741T	FRMPD2_uc001jgh.2_Silent_p.T709T|FRMPD2_uc001jgj.2_Silent_p.T719T	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	741					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GAGAGTCCCAGGTCATTGGCT	0.592													9	18					0	0	0.004482	0	0
LRRC18	474354	broad.mit.edu	37	10	50122129	50122129	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:50122129G>A	uc001jhd.2	-	1	152	c.72C>T	c.(70-72)ATC>ATT	p.I24I	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.I24I	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	24						cytoplasm		p.I24F(1)		ovary(1)|pancreas(1)	2						CATCAAAAGTGATTTTGATGC	0.468													10	28					0	0	0.000673	0	0
C10orf72	196740	broad.mit.edu	37	10	50315832	50315832	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:50315832C>T	uc001jhf.2	-	2	293	c.264G>A	c.(262-264)GGG>GGA	p.G88G	C10orf72_uc001jhh.2_Silent_p.G88G	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	88	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						GGCTGAAATTCCCATAGTACT	0.627													14	38					0	0	0.003163	0	0
C10orf71	118461	broad.mit.edu	37	10	50531678	50531678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:50531678G>A	uc010qgp.1	+	3	1427	c.1088G>A	c.(1087-1089)GGA>GAA	p.G363E		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	363											0						GCTGTGGAAGGAAAAGCTCCC	0.532													23	35					0	0	0.003330	0	0
ERCC6	2074	broad.mit.edu	37	10	50686467	50686467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:50686467G>A	uc001jhs.3	-	11	2373	c.2219C>T	c.(2218-2220)CCA>CTA	p.P740L	ERCC6_uc009xod.2_5'Flank|ERCC6_uc010qgr.1_Missense_Mutation_p.P110L|ERCC6_uc001jhr.3_Missense_Mutation_p.P140L	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	740					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						CAGTAGGTATGGATTTATGGT	0.388								Direct_reversal_of_damage|NER					41	89					0	0	0.002522	0	0
A1CF	29974	broad.mit.edu	37	10	52575901	52575901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:52575901C>T	uc001jjj.2	-	9	1194	c.1006G>A	c.(1006-1008)GAT>AAT	p.D336N	A1CF_uc010qhn.1_Missense_Mutation_p.D344N|A1CF_uc001jji.2_Missense_Mutation_p.D336N|A1CF_uc001jjh.2_Missense_Mutation_p.D344N|A1CF_uc010qho.1_Missense_Mutation_p.D344N|A1CF_uc009xov.2_Missense_Mutation_p.D336N	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	336					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GTGGTGGGATCATAAACTTGG	0.517													4	17					0	0	0.000602	0	0
PRKG1	5592	broad.mit.edu	37	10	54011354	54011354	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:54011354C>T	uc001jjm.2	+	10	1250	c.1056C>T	c.(1054-1056)TTC>TTT	p.F352F	PRKG1_uc001jjo.2_Silent_p.F367F|PRKG1_uc009xow.1_Silent_p.F70F|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	352					actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		CGGCTTTCTTCGCCAACCTGA	0.408													5	22					0	0	0.000602	0	0
PCDH15	65217	broad.mit.edu	37	10	55663086	55663086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:55663086G>A	uc001jju.1	-	26	3813	c.3418C>T	c.(3418-3420)CAT>TAT	p.H1140Y	PCDH15_uc010qhq.1_Missense_Mutation_p.H1145Y|PCDH15_uc010qhr.1_Missense_Mutation_p.H1140Y|PCDH15_uc010qhs.1_Missense_Mutation_p.H1152Y|PCDH15_uc010qht.1_Missense_Mutation_p.H1147Y|PCDH15_uc010qhu.1_Missense_Mutation_p.H1140Y|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.H1140Y|PCDH15_uc010qhw.1_Missense_Mutation_p.H1103Y|PCDH15_uc010qhx.1_Missense_Mutation_p.H1069Y|PCDH15_uc010qhy.1_Missense_Mutation_p.H1145Y|PCDH15_uc010qhz.1_Missense_Mutation_p.H1140Y|PCDH15_uc010qia.1_Missense_Mutation_p.H1118Y|PCDH15_uc010qib.1_Missense_Mutation_p.H1118Y	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1140	Cadherin 10.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACTGGGGGATGATTATTTTCA	0.368										HNSCC(58;0.16)			5	27					0	0	0.001168	0	0
FAM13C	220965	broad.mit.edu	37	10	61028373	61028373	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:61028373C>T	uc001jkn.2	-	9	1016	c.882G>A	c.(880-882)CAG>CAA	p.Q294Q	FAM13C_uc001jko.2_Silent_p.Q294Q|FAM13C_uc010qid.1_Silent_p.Q211Q|FAM13C_uc010qie.1_Silent_p.Q211Q|FAM13C_uc010qif.1_Silent_p.Q316Q|FAM13C_uc001jkp.2_Silent_p.Q211Q	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	294										ovary(2)	2						GCTTGAGGCTCTGGATGTGCT	0.498													6	13					0	0	0.001984	0	0
SLC16A9	220963	broad.mit.edu	37	10	61414278	61414278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:61414278C>T	uc010qig.1	-	5	955	c.506G>A	c.(505-507)GGA>GAA	p.G169E		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	169	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						CAGCAAGCATCCATCCAGTCC	0.438													27	71					0	0	0.001512	0	0
CTNNA3	29119	broad.mit.edu	37	10	68381523	68381523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:68381523G>A	uc009xpn.1	-	10	1424	c.1301C>T	c.(1300-1302)TCC>TTC	p.S434F	CTNNA3_uc001jmw.2_Missense_Mutation_p.S434F|CTNNA3_uc001jmx.3_Missense_Mutation_p.S434F	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	434					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TGTTGACATGGAACAAGCAAG	0.328													6	21					0	0	0.004482	0	0
MYPN	84665	broad.mit.edu	37	10	69881563	69881563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:69881563G>A	uc001jnm.3	+	3	553	c.368G>A	c.(367-369)CGA>CAA	p.R123Q	MYPN_uc001jnl.1_Missense_Mutation_p.R123Q|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Missense_Mutation_p.R123Q|MYPN_uc001jnp.1_Missense_Mutation_p.R123Q|MYPN_uc009xps.2_Missense_Mutation_p.R123Q|MYPN_uc009xpt.2_Missense_Mutation_p.R123Q|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	123	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GATAACCCTCGAAGTCCCACC	0.433													7	28					0	0	0.004482	0	0
SLC25A16	8034	broad.mit.edu	37	10	70248341	70248341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:70248341G>A	uc001joi.2	-	7	1108	c.656C>T	c.(655-657)TCC>TTC	p.S219F	SLC25A16_uc010qix.1_Missense_Mutation_p.S85F|SLC25A16_uc010qiy.1_Missense_Mutation_p.S121F|SLC25A16_uc001joj.2_Missense_Mutation_p.S121F	NM_152707	NP_689920	P16260	GDC_HUMAN	solute carrier family 25, member 16	219					coenzyme biosynthetic process|pantothenate metabolic process	integral to membrane|mitochondrial inner membrane	binding|solute:solute antiporter activity				0						AGGAGCATGGGAAAGCCCAAC	0.378													14	35					0	0	0.004007	0	0
TACR2	6865	broad.mit.edu	37	10	71164665	71164665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:71164665C>T	uc001jpn.2	-	5	1709	c.1114G>A	c.(1114-1116)GAG>AAG	p.E372K	TACR2_uc001jpm.2_Missense_Mutation_p.E160K	NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	372	Cytoplasmic (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	CGCCCCGCCTCCCCACTGGTA	0.403													4	17					0	0	0.000602	0	0
OIT3	170392	broad.mit.edu	37	10	74690355	74690355	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:74690355T>A	uc001jte.1	+	8	1645	c.1427T>A	c.(1426-1428)TTC>TAC	p.F476Y	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	476	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					GCAAAGCACTTCCAGGTCCCT	0.418													37	109					0	0	0.001287	0	0
OIT3	170392	broad.mit.edu	37	10	74692132	74692132	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:74692132G>A	uc001jte.1	+	9	1706	c.1488G>A	c.(1486-1488)CGG>CGA	p.R496R	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	496	ZP.					nuclear envelope	calcium ion binding	p.R496L(1)		ovary(2)	2	Prostate(51;0.0198)					TGCACTGCCGGGTTCTTGTCT	0.438													38	94					0	0	0.003610	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74714432	74714432	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:74714432G>A	uc001jtf.1	-	1	79	c.12C>T	c.(10-12)GCC>GCT	p.A4A	PLA2G12B_uc009xqt.1_5'UTR|PLA2G12B_uc010qjz.1_Silent_p.A4A	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	4					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					AGAAGCCACTGGCCAGCTTCA	0.602													13	30					0	0	0.002450	0	0
CAMK2G	818	broad.mit.edu	37	10	75607824	75607824	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:75607824G>A	uc001jvv.1	-	9	718	c.594C>T	c.(592-594)ATC>ATT	p.I198I	CAMK2G_uc001jvm.1_Silent_p.I206I|CAMK2G_uc001jvo.1_Silent_p.I206I|CAMK2G_uc001jvq.1_Silent_p.I206I|CAMK2G_uc001jvr.1_Silent_p.I206I|CAMK2G_uc001jvp.1_Silent_p.I206I|CAMK2G_uc001jvs.1_Silent_p.I206I|CAMK2G_uc001jvt.1_RNA|CAMK2G_uc001jvu.1_Silent_p.I184I|CAMK2G_uc010qkv.1_Intron	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	206	Protein kinase.				insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					CCACCAGGAGGATATACAGGA	0.547													24	84					0	0	0.003330	0	0
MYST4	23522	broad.mit.edu	37	10	76719728	76719728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:76719728C>T	uc001jwn.1	+	4	1115	c.622C>T	c.(622-624)CCC>TCC	p.P208S	MYST4_uc001jwm.1_Missense_Mutation_p.P208S|MYST4_uc001jwo.1_Missense_Mutation_p.P208S|MYST4_uc001jwp.1_Missense_Mutation_p.P208S	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	208					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TTTGTCATAGCCCCGTGCTGA	0.333			T	CREBBP	AML								21	70					0	0	0.003954	0	0
ZNF503	84858	broad.mit.edu	37	10	77158574	77158574	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:77158574G>C	uc001jxg.2	-	2	2210	c.1874C>G	c.(1873-1875)CCG>CGG	p.P625R	C10orf41_uc010qlf.1_5'Flank	NM_032772	NP_116161	Q96F45	ZN503_HUMAN	zinc finger protein 503	625					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1	all_cancers(46;0.105)|all_epithelial(25;0.00449)|Prostate(51;0.0112)|Ovarian(15;0.088)					GGAGTAGTACGGTCCGGTGGC	0.582													3	9					0	0	0.000248	0	0
SFTPA2	729238	broad.mit.edu	37	10	81319087	81319087	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:81319087T>A	uc001kal.3	-	3	250	c.153A>T	c.(151-153)AAA>AAT	p.K51N	SFTPA2_uc001kan.3_Missense_Mutation_p.K51N|SFTPA2_uc001kam.2_RNA	NM_006926	NP_008857	Q8IWL1	SFPA2_HUMAN	RecName: Full=Pulmonary surfactant-associated protein A2;          Short=SP-A2;          Short=SP-A;          Short=PSP-A;          Short=PSPA; AltName: Full=Alveolar proteinosis protein; AltName: Full=35 kDa pulmonary surfactant-associated protein; Flags: Precursor;	51	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			CAGGGTCTCCTTTGACACCAT	0.632									Pulmonary_Fibrosis_Idiopathic				9	83					0	0	0.000443	0	0
SH2D4B	387694	broad.mit.edu	37	10	82369275	82369275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:82369275G>A	uc001kck.1	+	6	1383	c.953G>A	c.(952-954)AGG>AAG	p.R318K	SH2D4B_uc001kcl.1_Missense_Mutation_p.R270K|SH2D4B_uc001kcm.1_Missense_Mutation_p.R65K	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1	317											0			Colorectal(32;0.229)			GGCTTCGAGAGGAACACCAAG	0.592													15	51					0	0	0.006122	0	0
LRIT2	340745	broad.mit.edu	37	10	85984123	85984123	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:85984123C>T	uc001kcy.2	-	2	866	c.858G>A	c.(856-858)TGG>TGA	p.W286*	LRIT2_uc010qmc.1_Nonsense_Mutation_p.W286*	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	286	Ig-like.					integral to membrane				ovary(2)	2						GGGGATAAGTCCATGCAATGG	0.537													9	27					0	0	0.000443	0	0
GRID1	2894	broad.mit.edu	37	10	87487690	87487690	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:87487690G>A	uc001kdl.1	-	10	1556	c.1455C>T	c.(1453-1455)TAC>TAT	p.Y485Y	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.Y56Y	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	485	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CAGGGGCTTGGTAAATCTCAT	0.537										Multiple Myeloma(13;0.14)			15	58					0	0	0.004990	0	0
LIPJ	142910	broad.mit.edu	37	10	90353762	90353762	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:90353762T>C	uc001kff.2	+	5	504	c.190T>C	c.(190-192)TCC>CCC	p.S64P		NM_001010939	NP_001010939	Q5W064	LIPJ_HUMAN	lipase, family member J	64					lipid catabolic process		hydrolase activity			ovary(1)	1		all_cancers(4;2.79e-10)|Prostate(4;1.68e-15)|all_epithelial(4;1.43e-09)|Colorectal(252;0.0381)|Breast(4;0.141)|Melanoma(5;0.2)|all_hematologic(4;0.222)		Colorectal(12;1.02e-05)|COAD - Colon adenocarcinoma(12;1.54e-05)		CAGCTGGATTTCCAATCTTCC	0.408													2	6					0	0	0.004672	0	0
FAS	355	broad.mit.edu	37	10	90770295	90770295	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:90770295G>A	uc001kfr.2	+	5	790	c.444_splice	c.e5-1	p.K148_splice	FAS_uc010qna.1_Splice_Site|FAS_uc001kfs.2_Splice_Site_p.K148_splice|FAS_uc001kft.2_Splice_Site_p.K148_splice|FAS_uc010qnb.1_Splice_Site|FAS_uc010qnc.1_Splice_Site|FAS_uc001kfw.2_Splice_Site_p.D112_splice|FAS_uc010qnd.1_Splice_Site|FAS_uc010qne.1_Splice_Site|FAS_uc009xtp.2_Splice_Site	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,						activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		TTTTTTTCTAGATGTGAACAT	0.348									Autoimmune_Lymphoproliferative_syndrome_type_I				3	5					0	0	0.000248	0	0
IFIT2	3433	broad.mit.edu	37	10	91065834	91065834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:91065834C>T	uc009xts.2	+	2	296	c.121C>T	c.(121-123)CGG>TGG	p.R41W	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron	NM_001547	NP_001538	P09913	IFIT2_HUMAN	interferon-induced protein with	41					negative regulation of protein binding|response to virus|type I interferon-mediated signaling pathway		protein binding			ovary(1)|skin(1)	2		Colorectal(252;0.0161)				AGTATTTTACCGGACTGAGTT	0.453													10	33					0	0	0.000673	0	0
ANKRD1	27063	broad.mit.edu	37	10	92677521	92677521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:92677521C>T	uc001khe.1	-	5	768	c.520G>A	c.(520-522)GAA>AAA	p.E174K		NM_014391	NP_055206	Q15327	ANKR1_HUMAN	cardiac ankyrin repeat protein	174	ANK 1.				cellular lipid metabolic process|defense response|signal transduction		DNA binding				0		Colorectal(252;0.0475)				GCTCCAGCTTCCATTAACTTC	0.403													12	33					0	0	0.002450	0	0
MYOF	26509	broad.mit.edu	37	10	95134595	95134595	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:95134595C>T	uc001kin.2	-	23	2349	c.2226G>A	c.(2224-2226)TCG>TCA	p.S742S	MYOF_uc001kio.2_Silent_p.S729S|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	742	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						CTGTGGCTTCCGACCTCATCC	0.483													12	36					0	0	0.001368	0	0
CEP55	55165	broad.mit.edu	37	10	95262876	95262876	+	Nonsense_Mutation	SNP	C	T	T	rs146596670		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:95262876C>T	uc009xug.2	+	3	372	c.190C>T	c.(190-192)CGA>TGA	p.R64*	CEP55_uc001kiq.3_Nonsense_Mutation_p.R64*	NM_001127182	NP_001120654	Q53EZ4	CEP55_HUMAN	centrosomal protein 55kDa	64	Potential.				cell division|mitosis	centriole|cleavage furrow|midbody					0		Colorectal(252;0.207)				CTAGAAAATTCGAGTCCTTGA	0.368													8	28					0	0	0.004482	0	0
PLCE1	51196	broad.mit.edu	37	10	96058180	96058180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:96058180C>T	uc001kjk.2	+	24	5846	c.5212C>T	c.(5212-5214)CCT>TCT	p.P1738S	PLCE1_uc010qnx.1_Missense_Mutation_p.P1722S|PLCE1_uc001kjm.2_Missense_Mutation_p.P1430S|PLCE1_uc001kjp.2_Missense_Mutation_p.P96S	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1738	Required for activation by RHOA, RHOB, GNA12, GNA13 and G-beta gamma (By similarity).|PI-PLC Y-box.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ATCTTCTTCCCCTCTCAACCC	0.453													20	57					0	0	0.001523	0	0
CYP2C18	1562	broad.mit.edu	37	10	96466568	96466568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:96466568G>A	uc001kjv.3	+	5	996	c.670G>A	c.(670-672)GAT>AAT	p.D224N	CYP2C18_uc001kjw.3_Intron|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	224					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TGCTCTCATCGATTATCTCCC	0.303													4	20					0	0	0.000602	0	0
CYP2C9	1559	broad.mit.edu	37	10	96698526	96698526	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:96698526C>T	uc001kka.3	+	1	112	c.87C>T	c.(85-87)CTC>CTT	p.L29L	CYP2C9_uc009xut.2_Silent_p.L29L|CYP2C9_uc001kjz.2_Silent_p.L29L	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	29					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GAGGAAAACTCCCTCCTGGCC	0.463													8	28					0	0	0.003080	0	0
CYP2C9	1559	broad.mit.edu	37	10	96701997	96701998	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:96701997_96701998CC>TT	uc001kka.3	+	3	405_406	c.380_381CC>TT	c.(379-381)TCC>TTT	p.S127F	CYP2C9_uc009xut.2_Missense_Mutation_p.S127F|CYP2C9_uc001kjz.2_Missense_Mutation_p.S127F	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	127					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CGGCGTTTCTCCCTCATGACGC	0.5													9	14					0	0	0.004672	0	0
CYP2C9	1559	broad.mit.edu	37	10	96741065	96741065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:96741065C>T	uc001kka.3	+	7	1112	c.1087C>T	c.(1087-1089)CCC>TCC	p.P363S	CYP2C9_uc009xut.2_Missense_Mutation_p.P361S	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	363					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TGACCTTCTCCCCACCAGCCT	0.502													3	8					0	0	0.004672	0	0
CYP2C8	1558	broad.mit.edu	37	10	96802710	96802710	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:96802710G>A	uc001kkb.2	-	7	1181	c.1086C>T	c.(1084-1086)GTC>GTT	p.V362V	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Silent_p.V292V|CYP2C8_uc010qob.1_Silent_p.V276V|CYP2C8_uc010qoc.1_Silent_p.V260V|CYP2C8_uc010qod.1_Silent_p.V276V	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	362					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	CACCGGTGGGGACAAGGTCAC	0.488													5	55					0	0	0.000602	0	0
TM9SF3	56889	broad.mit.edu	37	10	98303926	98303926	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:98303926G>A	uc001kmm.3	-	9	1309	c.1092C>T	c.(1090-1092)TTC>TTT	p.F364F	TM9SF3_uc010qot.1_Silent_p.F364F|TM9SF3_uc001kmn.1_Silent_p.F133F	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	364	Helical; (Potential).					integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		CTGGGATAAGGAATGCCCCAA	0.353													9	39					0	0	0.000673	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98416563	98416563	+	Missense_Mutation	SNP	G	A	A	rs148582013		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:98416563G>A	uc001kmq.2	-	3	687	c.559C>T	c.(559-561)CGC>TGC	p.R187C	PIK3AP1_uc001kmp.2_Missense_Mutation_p.R9C	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	187	DBB.					cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		ACCCCACAGCGAATGCGGTCC	0.547													30	53					0	0	0.002836	0	0
SEC31B	25956	broad.mit.edu	37	10	102250017	102250017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:102250017G>A	uc001krc.1	-	21	2815	c.2713C>T	c.(2713-2715)CCT>TCT	p.P905S	SEC31B_uc010qpo.1_Missense_Mutation_p.P904S|SEC31B_uc001krd.1_Missense_Mutation_p.P442S|SEC31B_uc001krf.1_Intron|SEC31B_uc001kre.1_Intron	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	905	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		CATGTCCCAGGGAATCCCACC	0.542													5	25					0	0	0.000602	0	0
FAM178A	55719	broad.mit.edu	37	10	102683838	102683839	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:102683838_102683839CC>TT	uc001krt.3	+	5	1622_1623	c.1080_1081CC>TT	c.(1078-1083)TTCCTT>TTTTTT	p.L361F	FAM178A_uc001krr.1_Missense_Mutation_p.L361F|FAM178A_uc001krs.2_Missense_Mutation_p.L361F|FAM178A_uc001kru.1_Missense_Mutation_p.L296F	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	361											0						GAGAGTCCTTCCTTGAGAAGCG	0.381													10	22					0	0	0.004672	0	0
LZTS2	84445	broad.mit.edu	37	10	102763647	102763647	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:102763647C>T	uc001ksj.2	+	3	861	c.792C>T	c.(790-792)GTC>GTT	p.V264V	LZTS2_uc010qpw.1_Silent_p.V264V|LZTS2_uc001ksk.2_Silent_p.V264V|LZTS2_uc001ksl.2_Silent_p.V264V|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	264	Ser-rich.|Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		CCCGAGGGGTCCCTACTGGGC	0.701													7	24					0	0	0.001984	0	0
POLL	27343	broad.mit.edu	37	10	103339389	103339389	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:103339389G>A	uc001ktg.1	-	8	2315	c.1549C>T	c.(1549-1551)CGA>TGA	p.R517*	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_Nonsense_Mutation_p.R190*|POLL_uc001kte.1_Nonsense_Mutation_p.R209*|POLL_uc001kth.1_Nonsense_Mutation_p.R242*|POLL_uc001kti.1_Nonsense_Mutation_p.R517*|POLL_uc001ktj.1_Nonsense_Mutation_p.R517*|POLL_uc001ktf.2_Nonsense_Mutation_p.R425*|POLL_uc001ktk.1_Nonsense_Mutation_p.R256*|POLL_uc010qqa.1_Nonsense_Mutation_p.R256*|POLL_uc010qqb.1_RNA|POLL_uc001ktm.2_Nonsense_Mutation_p.R517*|POLL_uc001ktl.2_Nonsense_Mutation_p.R429*|POLL_uc010qqc.1_Nonsense_Mutation_p.R209*	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	517					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		GCCAGGGCTCGCATGGAGCGG	0.627								DNA_polymerases_(catalytic_subunits)					22	68					0	0	0.003954	0	0
PSD	5662	broad.mit.edu	37	10	104175790	104175790	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:104175790C>T	uc001kvg.1	-	3	1268	c.741G>A	c.(739-741)TTG>TTA	p.L247L	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Silent_p.L247L	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	247					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		TGGGGGGGTCCAAGGAGCCAT	0.612													5	11					0	0	0.000602	0	0
PSD	5662	broad.mit.edu	37	10	104176757	104176757	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:104176757G>A	uc001kvg.1	-	2	566	c.39C>T	c.(37-39)GAC>GAT	p.D13D	PSD_uc001kvh.1_Intron|PSD_uc009xxd.1_Silent_p.D13D|PSD_uc001kvi.1_Silent_p.D13D|FBXL15_uc001kvj.1_5'Flank|FBXL15_uc001kvk.2_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	13					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		AGATGGCACAGTCGCCTTCCG	0.721													4	6					0	0	0.000248	0	0
ACTR1A	10121	broad.mit.edu	37	10	104241783	104241783	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:104241783G>A	uc001kvv.2	-	8	1008	c.900C>T	c.(898-900)CTC>CTT	p.L300L	ACTR1A_uc010qqn.1_Silent_p.L226L|ACTR1A_uc010qqo.1_Silent_p.L253L	NM_005736	NP_005727	P61163	ACTZ_HUMAN	ARP1 actin-related protein 1 homolog A,	300					G2/M transition of mitotic cell cycle|vesicle-mediated transport	centrosome|cytosol|dynactin complex	ATP binding			central_nervous_system(1)	1		Colorectal(252;0.122)		Epithelial(162;5.34e-09)|all cancers(201;1.43e-07)|BRCA - Breast invasive adenocarcinoma(275;0.222)		AGCCTCCTGAGAGGACAATGT	0.542													11	41					0	0	0.000673	0	0
SMC3	9126	broad.mit.edu	37	10	112342355	112342355	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:112342355C>T	uc001kze.2	+	10	885	c.759C>T	c.(757-759)TCC>TCT	p.S253S		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	253	Potential.				cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		GAGAAAAATCCAGACAATTAA	0.279													4	20					0	0	0.000248	0	0
SHOC2	8036	broad.mit.edu	37	10	112764468	112764468	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:112764468C>T	uc001kzl.3	+	5	1426	c.1077C>T	c.(1075-1077)TCC>TCT	p.S359S	SHOC2_uc009xxx.2_Silent_p.S359S|SHOC2_uc010qrg.1_5'UTR|SHOC2_uc001kzn.2_Silent_p.S313S	NM_007373	NP_031399	Q9UQ13	SHOC2_HUMAN	soc-2 suppressor of clear homolog	359	LRR 12.				fibroblast growth factor receptor signaling pathway|positive regulation of Ras protein signal transduction|Ras protein signal transduction	nucleus|protein phosphatase type 1 complex	protein phosphatase binding|protein phosphatase regulator activity			ovary(1)|skin(1)	2				Epithelial(162;0.000796)|all cancers(201;0.011)|BRCA - Breast invasive adenocarcinoma(275;0.126)		CCATCTATTCCCTCAACATGG	0.353													8	43					0	0	0.000978	0	0
VTI1A	143187	broad.mit.edu	37	10	114427985	114427985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:114427985G>A	uc001kzy.2	+	6	812	c.436G>A	c.(436-438)GGT>AGT	p.G146S	VTI1A_uc001kzz.2_Missense_Mutation_p.G146S	NM_145206	NP_660207	Q96AJ9	VTI1A_HUMAN	SNARE Vti1a-beta protein	146	Potential.				intracellular protein transport|retrograde transport, endosome to Golgi	SNARE complex	protein transporter activity|SNAP receptor activity			ovary(1)	1		Colorectal(252;0.0314)|Breast(234;0.183)		Epithelial(162;0.0126)|all cancers(201;0.0487)		AGAGCAAATTGGTCAGGAGAT	0.343													4	15					0	0	0.000248	0	0
HABP2	3026	broad.mit.edu	37	10	115335753	115335754	+	Missense_Mutation	DNP	GT	TA	TA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:115335753_115335754GT>TA	uc001lai.3	+	4	424_425	c.321_322GT>TA	c.(319-324)AAGTGT>AATAGT	p.107_108KC>NS	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Missense_Mutation_p.S96I	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	107_108	EGF-like 1.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		CTGGGAATAAGTGTCAGAAAGG	0.535													16	35					0	0	0.004672	0	0
TDRD1	56165	broad.mit.edu	37	10	115962926	115962926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:115962926G>A	uc001lbg.1	+	7	945	c.792G>A	c.(790-792)ATG>ATA	p.M264I	TDRD1_uc001lbf.2_Missense_Mutation_p.M255I|TDRD1_uc001lbh.1_Missense_Mutation_p.M255I|TDRD1_uc001lbi.1_Missense_Mutation_p.M255I|TDRD1_uc010qsc.1_5'Flank|TDRD1_uc001lbj.2_5'Flank	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	264					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		AGAAAACCATGGAAATAAAGG	0.368													5	18					0	0	0.000602	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116061184	116061184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:116061184C>T	uc001lbn.2	-	13	1772	c.1471G>A	c.(1471-1473)GAT>AAT	p.D491N	AFAP1L2_uc001lbo.2_Missense_Mutation_p.D491N|AFAP1L2_uc010qse.1_Missense_Mutation_p.D544N|AFAP1L2_uc001lbp.2_Missense_Mutation_p.D519N|AFAP1L2_uc001lbr.1_Missense_Mutation_p.D491N|AFAP1L2_uc001lbm.2_Missense_Mutation_p.D13N|AFAP1L2_uc010qsd.1_Missense_Mutation_p.D57N|AFAP1L2_uc001lbq.1_Missense_Mutation_p.D13N	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	491					inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		GGCAGGCCATCGATGTAAGTG	0.612													16	38					0	0	0.006122	0	0
KCNK18	338567	broad.mit.edu	37	10	118969418	118969418	+	Missense_Mutation	SNP	G	A	A	rs3026042		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:118969418G>A	uc010qsr.1	+	3	763	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	255	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		CTCGTGTCCCGAACTGGTGTT	0.532													14	30					0	0	0.002450	0	0
FGFR2	2263	broad.mit.edu	37	10	123325068	123325068	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:123325068A>G	uc010qtk.1	-	3	907	c.260T>C	c.(259-261)CTT>CCT	p.L87P	FGFR2_uc010qtg.1_Missense_Mutation_p.L87P|FGFR2_uc010qth.1_Intron|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Missense_Mutation_p.L87P|FGFR2_uc010qtl.1_Missense_Mutation_p.L87P|FGFR2_uc010qtm.1_Intron|FGFR2_uc001lfl.3_Missense_Mutation_p.L87P|FGFR2_uc001lfm.2_Intron|FGFR2_uc001lfn.3_Intron|FGFR2_uc010qtn.1_Missense_Mutation_p.L106P|FGFR2_uc010qto.1_Intron|FGFR2_uc001lfo.1_Missense_Mutation_p.L106P|FGFR2_uc010qtp.1_Missense_Mutation_p.L106P|FGFR2_uc010qtq.1_Missense_Mutation_p.L106P	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	87	Ig-like C2-type 1.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	CTCCCCAATAAGCACTGTCCT	0.547		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				13	71					0	0	0.003163	0	0
TACC2	10579	broad.mit.edu	37	10	123842291	123842291	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:123842291T>C	uc001lfv.2	+	4	636	c.276T>C	c.(274-276)GGT>GGC	p.G92G	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.G92G|TACC2_uc010qtv.1_Silent_p.G92G	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	92						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GGCCAGAAGGTTCTTTGCTGC	0.637													18	22					0	0	0.001882	0	0
TACC2	10579	broad.mit.edu	37	10	123970852	123970852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:123970852G>A	uc001lfv.2	+	9	7272	c.6912G>A	c.(6910-6912)ATG>ATA	p.M2304I	TACC2_uc001lfw.2_Missense_Mutation_p.M450I|TACC2_uc009xzx.2_Missense_Mutation_p.M2259I|TACC2_uc010qtv.1_Missense_Mutation_p.M2308I|TACC2_uc001lfx.2_Missense_Mutation_p.M8I|TACC2_uc001lfy.2_Missense_Mutation_p.M8I|TACC2_uc001lfz.2_Missense_Mutation_p.M382I|TACC2_uc001lga.2_Missense_Mutation_p.M382I|TACC2_uc009xzy.2_Missense_Mutation_p.M382I|TACC2_uc001lgb.2_Missense_Mutation_p.M339I|TACC2_uc010qtw.1_Missense_Mutation_p.M399I	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2304						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GGCCAAAGATGAAAAAGACAC	0.498													30	54					0	0	0.001061	0	0
CUZD1	50624	broad.mit.edu	37	10	124597015	124597015	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:124597015G>A	uc001lgq.2	-	4	836	c.504C>T	c.(502-504)CCC>CCT	p.P168P	CUZD1_uc001lgp.2_5'UTR|CUZD1_uc009yad.2_5'UTR|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_5'UTR|CUZD1_uc009yae.2_5'UTR|CUZD1_uc001lgs.2_Silent_p.P168P|CUZD1_uc010qtz.1_Silent_p.P168P	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	168	Extracellular (Potential).|CUB 2.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TTGGGTAATTGGGGCTGGTGA	0.423													9	31					0	0	0.000673	0	0
CPXM2	119587	broad.mit.edu	37	10	125530445	125530445	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:125530445C>T	uc001lhk.1	-	8	1414	c.1089G>A	c.(1087-1089)GGG>GGA	p.G363G	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	363					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CTTCATGCTCCCCAGGGTGAT	0.478													47	145					0	0	0.003610	0	0
ADAM12	8038	broad.mit.edu	37	10	127724837	127724837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:127724837C>T	uc001ljk.2	-	21	2829	c.2416G>A	c.(2416-2418)GGC>AGC	p.G806S	ADAM12_uc010qul.1_Missense_Mutation_p.G757S	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	806	Cytoplasmic (Potential).				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		ACATTCAGGCCGTTGAGGGGT	0.562													27	61					0	0	0.002096	0	0
GLRX3	10539	broad.mit.edu	37	10	131959077	131959078	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:131959077_131959078CC>TT	uc001lkm.1	+	4	316_317	c.294_295CC>TT	c.(292-297)GACCGA>GATTGA	p.R99*	GLRX3_uc001lkn.1_Nonsense_Mutation_p.R99*|GLRX3_uc001lko.2_RNA	NM_006541	NP_006532	O76003	GLRX3_HUMAN	glutaredoxin 3	99	Thioredoxin.				cell redox homeostasis|negative regulation of cardiac muscle hypertrophy|regulation of the force of heart contraction	cell cortex	electron carrier activity|iron-sulfur cluster binding|metal ion binding|protein disulfide oxidoreductase activity				0		all_cancers(35;9.59e-07)|all_epithelial(44;1.48e-06)|Lung NSC(174;0.00566)|all_lung(145;0.00949)|Colorectal(57;0.142)|all_neural(114;0.16)|Breast(234;0.173)|Glioma(114;0.222)		OV - Ovarian serous cystadenocarcinoma(35;0.00218)		AGAAAATCGACCGATTAGATGG	0.376													11	37					0	0	0.004672	0	0
CYP2E1	1571	broad.mit.edu	37	10	135350649	135350649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:135350649G>A	uc001lnj.1	+	7	1083	c.1050G>A	c.(1048-1050)ATG>ATA	p.M350I	CYP2E1_uc001lnk.1_Missense_Mutation_p.M213I|CYP2E1_uc009ybl.1_Missense_Mutation_p.M151I|CYP2E1_uc009ybm.1_Missense_Mutation_p.M4I|CYP2E1_uc001lnl.1_Missense_Mutation_p.M151I	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	350					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	TGCCCTACATGGATGCTGTGG	0.522									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				13	45					0	0	0.001368	0	0
FRG2B	441581	broad.mit.edu	37	10	135440150	135440150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr10:135440150C>T	uc010qvg.1	-	1	150	c.97G>A	c.(97-99)GGC>AGC	p.G33S		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	33						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TCATCTGAGCCCTTTTCTGTA	0.507													7	100					0	0	0.000673	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642974	1642974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:1642974G>A	uc009ycy.1	-	3	575	c.488C>T	c.(487-489)TCC>TTC	p.S163F		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	177	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCCCCCCTTGGAACCCCCACA	0.667													21	51					0	0	0.004656	0	0
KCNQ1	3784	broad.mit.edu	37	11	2869092	2869092	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:2869092C>T	uc001lwn.2	+	16	1998	c.1890C>T	c.(1888-1890)CCC>CCT	p.P630P	KCNQ1_uc001lwo.2_Silent_p.P503P	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	630	Cytoplasmic (Potential).			LHGGSTPGSGGPPREGGAHITQPCGS -> MQQGGPTCNSR SQVVASNE (in Ref. 4; AAM94040).	blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	GCGGCGGCCCCCCCAGAGAGG	0.701													11	60					0	0	0.002450	0	0
OR52K2	119774	broad.mit.edu	37	11	4470782	4470782	+	Silent	SNP	C	T	T	rs143954018		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4470782C>T	uc001lyz.1	+	1	213	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGCAGCCATCGACCTGGTCC	0.532													29	60					0	0	0.001786	0	0
OR52K2	119774	broad.mit.edu	37	11	4471496	4471496	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4471496C>T	uc001lyz.1	+	1	927	c.927C>T	c.(925-927)TTC>TTT	p.F309F		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGGAGTATTCCCAAGAAAGG	0.493													10	15					0	0	0.000443	0	0
OR52K1	390036	broad.mit.edu	37	11	4510953	4510953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4510953C>T	uc001lza.1	+	1	823	c.823C>T	c.(823-825)CAC>TAC	p.H275Y		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	275	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		CCCTCGTGTCCACATACTCCT	0.493													48	56					0	0	0.003610	0	0
OR51D1	390038	broad.mit.edu	37	11	4661929	4661929	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4661929C>T	uc010qyk.1	+	1	909	c.909C>T	c.(907-909)GTC>GTT	p.V303V		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	303	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCCCCTTGTCTATGGAGCCA	0.517													27	88					0	0	0.001271	0	0
OR51E2	81285	broad.mit.edu	37	11	4703715	4703715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4703715G>A	uc001lzk.2	-	2	471	c.227C>T	c.(226-228)ACC>ATC	p.T76I		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	76	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CTTAGGCATGGTGGATGTGGA	0.502													28	34					0	0	0.002096	0	0
OR51F1	256892	broad.mit.edu	37	11	4791114	4791114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4791114G>A	uc010qyl.1	-	1	34	c.34C>T	c.(34-36)CCA>TCA	p.P12S		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	12						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AAGAAGGTTGGAAATTTAGAT	0.443													4	12					0	0	0.000248	0	0
OR51F2	119694	broad.mit.edu	37	11	4843091	4843091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4843091G>A	uc010qyn.1	+	1	476	c.476G>A	c.(475-477)GGG>GAG	p.G159E		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCAAGATTGGGATGAGCATG	0.463													16	78					0	0	0.006122	0	0
OR51S1	119692	broad.mit.edu	37	11	4869916	4869916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4869916G>A	uc010qyo.1	-	1	523	c.523C>T	c.(523-525)CCC>TCC	p.P175S		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGGCAGTAGGGCATGTAGGCC	0.542													27	98					0	0	0.001786	0	0
OR51G2	81282	broad.mit.edu	37	11	4936874	4936874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:4936874C>T	uc001lzr.1	-	1	20	c.20G>A	c.(19-21)GGA>GAA	p.G7E		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTGCTGTTTCCCAGGGATCC	0.547													8	12					0	0	0.000443	0	0
OR51B4	79339	broad.mit.edu	37	11	5322336	5322336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5322336G>A	uc010qza.1	-	1	841	c.841C>T	c.(841-843)CCT>TCT	p.P281S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACGAATGGAGGAAAGAGAAAA	0.428													4	30					0	0	0.000602	0	0
OR51B6	390058	broad.mit.edu	37	11	5373580	5373580	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5373580C>T	uc010qzb.1	+	1	843	c.843C>T	c.(841-843)TTC>TTT	p.F281F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTTCCTTTTCCCACCTTTTA	0.383													20	42					0	0	0.000958	0	0
OR51M1	390059	broad.mit.edu	37	11	5410645	5410645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5410645C>T	uc010qzc.1	+	1	17	c.17C>T	c.(16-18)TCG>TTG	p.S6L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	6						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTCCAATATTCGCTCAGTCCT	0.403													29	121					0	0	0.003271	0	0
OR51I2	390064	broad.mit.edu	37	11	5475610	5475610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5475610G>A	uc010qzf.1	+	1	892	c.892G>A	c.(892-894)GAA>AAA	p.E298K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAAGACAAAGGAAATCCGCCG	0.438													25	123					0	0	0.004878	0	0
OR51I2	390064	broad.mit.edu	37	11	5475616	5475616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5475616C>T	uc010qzf.1	+	1	898	c.898C>T	c.(898-900)CGC>TGC	p.R300C	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAGGAAATCCGCCGAGCCAT	0.443													70	76					0	0	0.003610	0	0
OR56B1	387748	broad.mit.edu	37	11	5757809	5757809	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5757809C>T	uc001mbt.1	+	1	63	c.63C>T	c.(61-63)TTC>TTT	p.F21F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Silent_p.F21F|OR56B1_uc009yev.1_Silent_p.F21F	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		TCTCTGAGTTCATCCTGCTGG	0.453													13	21					0	0	0.001368	0	0
OR56B1	387748	broad.mit.edu	37	11	5757959	5757959	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5757959C>T	uc001mbt.1	+	1	213	c.213C>T	c.(211-213)TTC>TTT	p.F71F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Silent_p.F71F|OR56B1_uc009yev.1_Silent_p.F71F	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		TGTATATTTTCCTTGGCATCC	0.493													5	22					0	0	0.000602	0	0
OR56B1	387748	broad.mit.edu	37	11	5758199	5758199	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5758199A>G	uc001mbt.1	+	1	453	c.453A>G	c.(451-453)TTA>TTG	p.L151L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Silent_p.L151L|OR56B1_uc009yev.1_Silent_p.L151L	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		CCTTAATCTTAAAAGCTACCC	0.438													8	32					0	0	0.004482	0	0
OR52N5	390075	broad.mit.edu	37	11	5799834	5799834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5799834G>A	uc010qzn.1	-	1	31	c.31C>T	c.(31-33)CCA>TCA	p.P11S	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		TGAATTGTTGGAAACCAGCAT	0.358													8	34					0	0	0.004482	0	0
OR52E6	390078	broad.mit.edu	37	11	5862870	5862870	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:5862870G>A	uc010qzq.1	-	1	258	c.258C>T	c.(256-258)ATC>ATT	p.I86I	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGAACCAGAAGATGCCCAGCA	0.473													21	21					0	0	0.001523	0	0
OR52L1	338751	broad.mit.edu	37	11	6007616	6007616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:6007616C>T	uc001mcd.2	-	1	600	c.545G>A	c.(544-546)GGA>GAA	p.G182E		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATAAGTTTTCCCAACAAAAT	0.493													22	38					0	0	0.001882	0	0
OR56B4	196335	broad.mit.edu	37	11	6129497	6129497	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:6129497C>T	uc010qzx.1	+	1	489	c.489C>T	c.(487-489)ATC>ATT	p.I163I		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTTGACCATCCCAGTGCCTA	0.512													26	46					0	0	0.001061	0	0
TRIM3	10612	broad.mit.edu	37	11	6470603	6470603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:6470603G>A	uc001mdh.2	-	12	2402	c.2015C>T	c.(2014-2016)CCC>CTC	p.P672L	TRIM3_uc001mdi.2_Missense_Mutation_p.P672L|TRIM3_uc010raj.1_Missense_Mutation_p.P553L|TRIM3_uc009yfd.2_Missense_Mutation_p.P672L|TRIM3_uc010rak.1_Missense_Mutation_p.P672L	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	672	NHL 5.				nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TACTCCTGTGGGGGCATTGAA	0.592													14	23					0	0	0.003163	0	0
TPP1	1200	broad.mit.edu	37	11	6636489	6636489	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:6636489G>A	uc001mel.1	-	11	1399	c.1338C>T	c.(1336-1338)GGC>GGT	p.G446G	TPP1_uc001mek.1_Silent_p.G203G	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	446					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		GGTAGGCACGGCCACTGGCAT	0.547													19	67					0	0	0.001523	0	0
OR2AG2	338755	broad.mit.edu	37	11	6789461	6789461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:6789461G>A	uc001meq.1	-	1	728	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	243	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AATCAGGTGGGAAGAGCAGGT	0.498													9	33					0	0	0.000443	0	0
NLRP14	338323	broad.mit.edu	37	11	7064198	7064198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:7064198G>A	uc001mfb.1	+	4	1264	c.941G>A	c.(940-942)AGA>AAA	p.R314K		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	314	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ACTTCTAAGAGACTAAAGCAG	0.418													19	37					0	0	0.001216	0	0
PPFIBP2	8495	broad.mit.edu	37	11	7660993	7660993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:7660993C>T	uc001mfj.3	+	15	1655	c.1267C>T	c.(1267-1269)CCC>TCC	p.P423S	PPFIBP2_uc010rbb.1_Missense_Mutation_p.P346S|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Missense_Mutation_p.P346S|PPFIBP2_uc010rbd.1_Missense_Mutation_p.P265S|PPFIBP2_uc010rbe.1_Missense_Mutation_p.P311S|PPFIBP2_uc001mfl.3_Missense_Mutation_p.P280S|PPFIBP2_uc009yfj.1_Missense_Mutation_p.P67S	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	423					cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		GCACAAATATCCCACTTTACC	0.537													79	114					0	0	0.003610	0	0
OR5P2	120065	broad.mit.edu	37	11	7818001	7818001	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:7818001G>A	uc001mfp.1	-	1	489	c.489C>T	c.(487-489)CTC>CTT	p.L163L		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GTCCACAGAAGAGTAAAAAAT	0.393													16	32					0	0	0.004990	0	0
NLRP10	338322	broad.mit.edu	37	11	7981857	7981857	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:7981857C>T	uc001mfv.1	-	2	1319	c.1302G>A	c.(1300-1302)AGG>AGA	p.R434R		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	434	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AATTATGTTTCCTGAGCTCAG	0.522													54	73					0	0	0.003610	0	0
STK33	65975	broad.mit.edu	37	11	8478967	8478967	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:8478967C>T	uc001mgi.1	-	5	1537	c.618G>A	c.(616-618)AGG>AGA	p.R206R	STK33_uc001mgj.1_Silent_p.R206R|STK33_uc001mgk.1_Silent_p.R206R|STK33_uc010rbn.1_Silent_p.R165R|STK33_uc001mgl.3_Silent_p.R19R|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	206	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		AATGCCCTTTCCTATCCAGAA	0.373													12	41					0	0	0.004007	0	0
MICAL2	9645	broad.mit.edu	37	11	12278353	12278353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:12278353C>T	uc001mjz.2	+	24	3265	c.2977C>T	c.(2977-2979)CCC>TCC	p.P993S	MICAL2_uc010rch.1_Missense_Mutation_p.P803S|MICAL2_uc001mka.2_Missense_Mutation_p.P993S|MICAL2_uc010rci.1_Missense_Mutation_p.P972S|MICAL2_uc001mkb.2_Missense_Mutation_p.P767S|MICAL2_uc001mkc.2_Missense_Mutation_p.P746S|MICAL2_uc001mkd.2_Missense_Mutation_p.P575S|MICAL2_uc010rcj.1_Missense_Mutation_p.P205S|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	993						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		AAAGTCATTTCCCCTTAACCT	0.522													9	33					0	0	0.000443	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16812746	16812746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:16812746C>T	uc001mmo.2	-	20	2761	c.2746G>A	c.(2746-2748)GAA>AAA	p.E916K	PLEKHA7_uc010rcu.1_Missense_Mutation_p.E917K|PLEKHA7_uc001mmm.2_Missense_Mutation_p.E19K|PLEKHA7_uc010rcv.1_Missense_Mutation_p.E491K|PLEKHA7_uc001mmn.2_Missense_Mutation_p.E625K	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	916	Pro-rich.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						GCTTCATCTTCCTGCTGAGAA	0.617													10	14					0	0	0.002450	0	0
GTF2H1	2965	broad.mit.edu	37	11	18357471	18357471	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:18357471A>G	uc001moi.2	+	4	1019	c.325A>G	c.(325-327)AAA>GAA	p.K109E	GTF2H1_uc001moh.2_Missense_Mutation_p.K109E|GTF2H1_uc009yhm.2_Intron	NM_001142307	NP_001135779	P32780	TF2H1_HUMAN	general transcription factor IIH, polypeptide 1,	109	BSD 1.				mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding				0						GAAAGCAAATAAAGAACTGGA	0.408								NER					7	29					0	0	0.003080	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955501	18955501	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:18955501G>A	uc001mpg.2	-	1	1049	c.831C>T	c.(829-831)TCC>TCT	p.S277S		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	277	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GCTGCCTAAAGGAGCCCACGA	0.507													11	12					0	0	0.001855	0	0
DBX1	120237	broad.mit.edu	37	11	20178180	20178180	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:20178180G>A	uc001mpw.1	-	4	729	c.729C>T	c.(727-729)TCC>TCT	p.S243S		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGGCTCCGGGGGACGCACGGG	0.627													34	36					0	0	0.001287	0	0
NELL1	4745	broad.mit.edu	37	11	20939776	20939776	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:20939776A>G	uc001mqe.2	+	6	805	c.652A>G	c.(652-654)ACA>GCA	p.T218A	NELL1_uc001mqf.2_Missense_Mutation_p.T218A|NELL1_uc009yid.2_Missense_Mutation_p.T246A|NELL1_uc010rdo.1_Missense_Mutation_p.T161A|NELL1_uc010rdp.1_Intron	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	218	TSP N-terminal.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						TGGATATATAACACAGTGTCC	0.353													6	16					0	0	0.003080	0	0
SLC17A6	57084	broad.mit.edu	37	11	22382448	22382448	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:22382448G>A	uc001mqk.2	+	5	992	c.579G>A	c.(577-579)GTG>GTA	p.V193V		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	193	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						CACAGGGTGTGACCTACCCAG	0.493													11	25					0	0	0.002450	0	0
SLC17A6	57084	broad.mit.edu	37	11	22399212	22399212	+	Missense_Mutation	SNP	G	A	A	rs138159912		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:22399212G>A	uc001mqk.2	+	12	2088	c.1675G>A	c.(1675-1677)GAA>AAA	p.E559K		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	559	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						TAGTGGTTGGGAAAAGAAAGA	0.368													7	13					0	0	0.003080	0	0
SLC17A6	57084	broad.mit.edu	37	11	22399224	22399224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:22399224G>A	uc001mqk.2	+	12	2100	c.1687G>A	c.(1687-1689)GAA>AAA	p.E563K		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	563	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						AAAGAAAGAGGAATTTGTACA	0.363													6	17					0	0	0.001984	0	0
SLC5A12	159963	broad.mit.edu	37	11	26708086	26708086	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:26708086A>G	uc001mra.2	-	10	1472	c.1159T>C	c.(1159-1161)TTA>CTA	p.L387L	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	387	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						ACGCCAAATAAGAGACCTGAA	0.453													8	16					0	0	0.003080	0	0
CCDC73	493860	broad.mit.edu	37	11	32720870	32720870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:32720870C>T	uc001mtv.2	-	6	361	c.317G>A	c.(316-318)GGA>GAA	p.G106E	CCDC73_uc001mtw.1_Missense_Mutation_p.G106E|CCDC73_uc009yjt.2_Missense_Mutation_p.G106E	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	106	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TTGATATTTTCCCTTTAAGTA	0.259													5	23					0	0	0.000602	0	0
ABTB2	25841	broad.mit.edu	37	11	34194758	34194758	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:34194758G>A	uc001mvl.1	-	4	1013	c.783C>T	c.(781-783)ATC>ATT	p.I261I		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	261							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				CTGCCTGCCGGATGTCGCCGC	0.672													19	20					0	0	0.001882	0	0
CAT	847	broad.mit.edu	37	11	34473725	34473725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:34473725C>T	uc001mvm.2	+	4	534	c.451C>T	c.(451-453)CCC>TCC	p.P151S	CAT_uc009ykc.1_RNA	NM_001752	NP_001743	P04040	CATA_HUMAN	catalase	151					hydrogen peroxide catabolic process|negative regulation of apoptosis|positive regulation of cell division|protein tetramerization|purine base metabolic process|purine nucleotide catabolic process|UV protection	peroxisomal matrix|peroxisomal membrane	catalase activity|heme binding|NADP binding|protein homodimerization activity			ovary(2)|pancreas(1)	3		Lung NSC(402;2.76e-08)|Acute lymphoblastic leukemia(5;0.00143)|all_hematologic(20;0.0116)|Melanoma(852;0.027)		BRCA - Breast invasive adenocarcinoma(625;0.000995)	Fomepizole(DB01213)	AAATAACACCCCCATTTTCTT	0.408													19	33					0	0	0.006122	0	0
PAMR1	25891	broad.mit.edu	37	11	35463052	35463052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:35463052C>T	uc001mwg.2	-	7	1053	c.1010G>A	c.(1009-1011)GGG>GAG	p.G337E	PAMR1_uc001mwf.2_Missense_Mutation_p.G354E|PAMR1_uc010rew.1_Missense_Mutation_p.G226E|PAMR1_uc010rex.1_Missense_Mutation_p.G297E	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	337	Sushi 1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						GGGCTGTTTCCCTGACCACTC	0.408													22	85					0	0	0.001882	0	0
PAMR1	25891	broad.mit.edu	37	11	35492219	35492219	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:35492219G>A	uc001mwg.2	-	5	685	c.642C>T	c.(640-642)CTC>CTT	p.L214L	PAMR1_uc001mwf.2_Silent_p.L214L|PAMR1_uc010rew.1_Intron|PAMR1_uc010rex.1_Silent_p.L174L	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	214	CUB.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						AGAGGACGTGGAGTGAGGATC	0.512													26	44					0	0	0.001271	0	0
TRAF6	7189	broad.mit.edu	37	11	36511691	36511691	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:36511691G>A	uc001mwr.1	-	8	1606	c.1266C>T	c.(1264-1266)CTC>CTT	p.L422L	uc001mwq.1_5'Flank|TRAF6_uc001mws.1_Silent_p.L422L	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	422	MATH.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				AGGGCCAAGGGAGGTGGCTGT	0.483													21	31					0	0	0.001882	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564472	46564472	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:46564472C>T	uc010rgu.1	-	7	1455	c.1095G>A	c.(1093-1095)CTG>CTA	p.L365L	AMBRA1_uc010rgt.1_5'UTR|AMBRA1_uc009ylc.1_Silent_p.L365L|AMBRA1_uc001ncu.1_Silent_p.L275L|AMBRA1_uc001ncv.2_Silent_p.L275L|AMBRA1_uc001ncw.2_Silent_p.L275L|AMBRA1_uc001ncx.2_Silent_p.L365L	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	365					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		ACGGCCGGTTCAGGAGGCCCT	0.627													36	109					0	0	0.002852	0	0
F2	2147	broad.mit.edu	37	11	46748337	46748337	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:46748337C>T	uc001ndf.3	+	9	1123	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	360					activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	AATCCTACATCGACGGGCGCA	0.587													20	78					0	0	0.001882	0	0
MYBPC3	4607	broad.mit.edu	37	11	47356646	47356646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:47356646C>T	uc001nfa.3	-	26	2907	c.2852G>A	c.(2851-2853)GGG>GAG	p.G951E		NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	950	Fibronectin type-III 2.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		GGCTCCAGGCCCTGCCATATT	0.637													13	10					0	0	0.001855	0	0
CELF1	10658	broad.mit.edu	37	11	47497004	47497004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:47497004G>A	uc001nfl.2	-	10	1083	c.1073C>T	c.(1072-1074)GCC>GTC	p.A358V	CELF1_uc001nfm.2_Missense_Mutation_p.A355V|CELF1_uc001nfn.2_Missense_Mutation_p.A354V|CELF1_uc001nfo.1_Missense_Mutation_p.A384V|CELF1_uc010rhm.1_Missense_Mutation_p.A357V|CELF1_uc001nfp.2_Missense_Mutation_p.A386V|CELF1_uc001nfq.1_Missense_Mutation_p.A358V|CELF1_uc001nfr.1_Missense_Mutation_p.A358V	NM_001025596	NP_001020767	Q92879	CELF1_HUMAN	CUG triplet repeat, RNA-binding protein 1	358					embryo development|mRNA splice site selection|regulation of RNA splicing|RNA interference	cytoplasm|nucleus|ribonucleoprotein complex	BRE binding|mRNA binding|nucleotide binding|translation repressor activity, nucleic acid binding			central_nervous_system(2)|ovary(1)	3						CTGAGTGAGGGCCTCCATGGT	0.537													17	72					0	0	0.001216	0	0
OR4X1	390113	broad.mit.edu	37	11	48285459	48285459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:48285459C>T	uc010rht.1	+	1	47	c.47C>T	c.(46-48)TCC>TTC	p.S16F		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						GTGGGATTTTCCCAGAATTGG	0.453													25	27					0	0	0.004656	0	0
LOC440040	440040	broad.mit.edu	37	11	49598034	49598034	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:49598034C>T	uc010rhy.1	+	2	625	c.147C>T	c.(145-147)ATC>ATT	p.I49I	LOC440040_uc009ymb.2_Silent_p.I49I	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						TGGAAAGGATCAATTCAGACC	0.532													5	9					0	0	0.001168	0	0
OR4A5	81318	broad.mit.edu	37	11	51411637	51411637	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:51411637G>A	uc001nhi.1	-	1	759	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				TAACATATATGAAAATACAGG	0.393													4	14					0	0	0.000248	0	0
OR4C15	81309	broad.mit.edu	37	11	55321881	55321881	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:55321881C>T	uc010rig.1	+	1	99	c.99C>T	c.(97-99)TTC>TTT	p.F33F		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	Error:Variant_position_missing_in_Q8NGM1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGCAAATTTTCCTTTGTCCTA	0.368										HNSCC(20;0.049)			14	34					0	0	0.002450	0	0
OR4C16	219428	broad.mit.edu	37	11	55340494	55340494	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:55340494G>A	uc010rih.1	+	1	891	c.891G>A	c.(889-891)AGG>AGA	p.R297R		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				GTGCCATGAGGAAGCTTTGGA	0.358													11	12					0	0	0.001368	0	0
OR5L1	219437	broad.mit.edu	37	11	55578985	55578985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:55578985C>T	uc001nhw.1	+	1	43	c.43C>T	c.(43-45)CTT>TTT	p.L15F		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				GTTCATTCTCCTTGGACTATC	0.428													19	93					0	0	0.001523	0	0
OR5D18	219438	broad.mit.edu	37	11	55587908	55587908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:55587908C>T	uc010rin.1	+	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TCCAAAAACTCCAGGCACACA	0.507													5	30					0	0	0.001168	0	0
OR8K5	219453	broad.mit.edu	37	11	55927452	55927452	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:55927452G>A	uc010rja.1	-	1	342	c.342C>T	c.(340-342)ATC>ATT	p.I114I		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				TGGCTGACAGGATGAAAAATT	0.423													33	30					0	0	0.003271	0	0
OR5T3	390154	broad.mit.edu	37	11	56020051	56020051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:56020051G>A	uc010rjd.1	+	1	376	c.376G>A	c.(376-378)GGA>AGA	p.G126R		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	126	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TTCATTTATCGGATGTGCAAC	0.363													36	60					0	0	0.001485	0	0
CTNND1	1500	broad.mit.edu	37	11	57574431	57574431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:57574431C>T	uc001nmc.3	+	12	2510	c.1939C>T	c.(1939-1941)CCT>TCT	p.P647S	CTNND1_uc001nlh.1_Missense_Mutation_p.P647S|CTNND1_uc001nlu.3_Missense_Mutation_p.P540S|CTNND1_uc001nlt.3_Missense_Mutation_p.P540S|CTNND1_uc001nls.3_Missense_Mutation_p.P540S|CTNND1_uc001nlw.3_Missense_Mutation_p.P540S|CTNND1_uc001nmf.3_Missense_Mutation_p.P647S|CTNND1_uc001nmd.3_Missense_Mutation_p.P593S|CTNND1_uc001nlk.3_Missense_Mutation_p.P593S|CTNND1_uc001nme.3_Missense_Mutation_p.P641S|CTNND1_uc001nll.3_Missense_Mutation_p.P587S|CTNND1_uc001nmg.3_Missense_Mutation_p.P587S|CTNND1_uc001nlj.3_Missense_Mutation_p.P587S|CTNND1_uc001nlr.3_Missense_Mutation_p.P587S|CTNND1_uc001nlp.3_Missense_Mutation_p.P587S|CTNND1_uc001nlx.3_Missense_Mutation_p.P324S|CTNND1_uc001nlz.3_Missense_Mutation_p.P324S|CTNND1_uc009ymn.2_Missense_Mutation_p.P318S|CTNND1_uc001nlm.3_Missense_Mutation_p.P641S|CTNND1_uc001nly.3_Missense_Mutation_p.P318S|CTNND1_uc001nmb.3_Missense_Mutation_p.P318S|CTNND1_uc001nma.3_Missense_Mutation_p.P318S|CTNND1_uc001nmi.3_Missense_Mutation_p.P546S|CTNND1_uc001nmh.3_Missense_Mutation_p.P641S|CTNND1_uc001nlq.3_Missense_Mutation_p.P546S|CTNND1_uc001nln.3_Missense_Mutation_p.P641S|CTNND1_uc001nli.3_Missense_Mutation_p.P641S|CTNND1_uc001nlo.3_Missense_Mutation_p.P540S|CTNND1_uc001nlv.3_Missense_Mutation_p.P540S	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	647					adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				AGTGGATTTCCCTAAAAGAAC	0.378													5	7					0	0	0.000602	0	0
GLYATL2	219970	broad.mit.edu	37	11	58602012	58602012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:58602012G>A	uc001nnd.3	-	6	906	c.775C>T	c.(775-777)CAT>TAT	p.H259Y	GLYATL2_uc009ymq.2_Missense_Mutation_p.H259Y	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	259						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TCTGCCACATGGAAATAAAAT	0.403													16	55					0	0	0.004007	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722282	58722282	+	Missense_Mutation	SNP	C	T	T	rs151204927		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:58722282C>T	uc001nnf.2	+	6	602	c.226C>T	c.(226-228)CGT>TGT	p.R76C	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.R107C|GLYATL1_uc001nni.1_Missense_Mutation_p.R76C|GLYATL1_uc001nnj.1_Missense_Mutation_p.R76C			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	76						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	AAACGTATATCGTATGTTCTC	0.383													9	37					0	0	0.000443	0	0
OR5AN1	390195	broad.mit.edu	37	11	59131940	59131940	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:59131940G>A	uc010rks.1	+	1	9	c.9G>A	c.(7-9)GGG>GGA	p.G3G		NM_001004729	NP_001004729	Q8NGI8	O5AN1_HUMAN	olfactory receptor, family 5, subfamily AN,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CAATGACTGGGGGAGGAAATA	0.398													6	23					0	0	0.001168	0	0
PATL1	219988	broad.mit.edu	37	11	59423511	59423511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:59423511G>A	uc001noe.3	-	7	874	c.731C>T	c.(730-732)TCC>TTC	p.S244F	PATL1_uc009yms.1_Intron|PATL1_uc010rkw.1_Intron	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	244	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						ACCCAGGAGGGAAGAGTTCTA	0.423													5	2					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	11	59997406	59997406	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:59997406C>T	uc001nov.2	-	1		c.139G>A			uc001now.2_RNA|uc001nox.2_Silent_p.K41K|uc001noy.2_Silent_p.K41K|uc009ymw.2_Silent_p.K41K					Homo sapiens mRNA for hypothetical protein, partial cds, clone:Hsa11-digit17-05-01-R.																		TGGGTTTCCTCTTGAAGAACT	0.448													5	5					0	0	0.000602	0	0
SYT7	9066	broad.mit.edu	37	11	61290569	61290569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:61290569C>T	uc001nrv.2	-	8	1091	c.1085G>A	c.(1084-1086)AGC>AAC	p.S362N	SYT7_uc009ynr.2_Missense_Mutation_p.S437N	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	362	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						GTCATTGCGGCTGAGCTTGTC	0.572													16	80					0	0	0.000958	0	0
C11orf9	745	broad.mit.edu	37	11	61539312	61539312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:61539312G>A	uc001nsc.1	+	7	1099	c.1003G>A	c.(1003-1005)GAC>AAC	p.D335N	C11orf9_uc001nse.1_Missense_Mutation_p.D326N	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	335	NDT80.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CCTCCTGCAGGACAGTGACAG	0.617													16	50					0	0	0.003163	0	0
SLC22A8	9376	broad.mit.edu	37	11	62763570	62763570	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:62763570G>A	uc001nwo.2	-	6	952	c.816C>T	c.(814-816)GCC>GCT	p.A272A	SLC22A8_uc001nwn.1_Silent_p.A63A|SLC22A8_uc001nwp.2_Silent_p.A272A|SLC22A8_uc009yom.2_Silent_p.A149A|SLC22A8_uc010rmm.1_Silent_p.A181A|SLC22A8_uc009yon.2_Silent_p.A272A	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	272	Cytoplasmic (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						GTATCTTCAGGGCCTTCGAGG	0.587													35	37					0	0	0.004878	0	0
SLC22A9	114571	broad.mit.edu	37	11	63176338	63176338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:63176338G>A	uc001nww.2	+	9	1856	c.1588G>A	c.(1588-1590)GAT>AAT	p.D530N	SLC22A9_uc001nwx.2_Intron	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	530	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						CACCATCCAGGATGAGAAAAA	0.498													13	14					0	0	0.002450	0	0
RTN3	10313	broad.mit.edu	37	11	63517625	63517625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:63517625C>T	uc001nxq.2	+	4	2880	c.2693C>T	c.(2692-2694)TCC>TTC	p.S898F	RTN3_uc001nxo.2_Missense_Mutation_p.S102F|RTN3_uc001nxm.2_Missense_Mutation_p.S121F|RTN3_uc001nxn.2_Missense_Mutation_p.S879F|RTN3_uc001nxp.2_Missense_Mutation_p.S102F|RTN3_uc009yov.2_Missense_Mutation_p.S786F|RTN3_uc010rmt.1_RNA|RTN3_uc010rmu.1_Missense_Mutation_p.S102F	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	898	Reticulon.				apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						ATCTACAAGTCCGTCATCCAA	0.448													7	25					0	0	0.004482	0	0
GPR137	56834	broad.mit.edu	37	11	64056796	64056796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:64056796C>T	uc001nzg.1	+	8	1521	c.1213C>T	c.(1213-1215)CCT>TCT	p.P405S	GPR137_uc010rni.1_Missense_Mutation_p.P463S|GPR137_uc001nzf.2_3'UTR|GPR137_uc001nzi.2_3'UTR|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	405	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						CTGGCCGGCTCCTTGCTGCTC	0.667													15	81					0	0	0.001216	0	0
NRXN2	9379	broad.mit.edu	37	11	64421195	64421195	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:64421195C>T	uc001oar.2	-	13	2829	c.2390_splice	c.e13-1	p.D797_splice	NRXN2_uc001oas.2_Intron|NRXN2_uc001oaq.2_Splice_Site_p.D464_splice	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor						cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CGCAGGCAGTCTGGGGGGGCC	0.582													4	15					0	0	0.000602	0	0
PYGM	5837	broad.mit.edu	37	11	64522293	64522293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:64522293C>T	uc001oax.3	-	8	1688	c.871G>A	c.(871-873)GAG>AAG	p.E291K	PYGM_uc001oay.3_Missense_Mutation_p.E203K	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	291					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	AGCCGCAGCTCCTTCCCTTCG	0.627													5	15					0	0	0.001168	0	0
EHD1	10938	broad.mit.edu	37	11	64621904	64621904	+	Silent	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:64621904C>A	uc001obu.1	-	5	1761	c.1506G>T	c.(1504-1506)GCG>GCT	p.A502A	EHD1_uc001obt.1_Silent_p.A185A|EHD1_uc001obv.1_Silent_p.A502A|EHD1_uc010rnq.1_Silent_p.A516A	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	502	EH.|EF-hand.				blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						GGTTGGCCAGCGCGAACTCCT	0.637													9	25					2.74318e-10	5.37614e-10	0.000443	1	0
CDC42EP2	10435	broad.mit.edu	37	11	65088671	65088671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:65088671C>T	uc001odl.2	+	2	752	c.302C>T	c.(301-303)TCC>TTC	p.S101F		NM_006779	NP_006770	O14613	BORG1_HUMAN	Cdc42 effector protein 2	101					actin filament organization|positive regulation of actin filament polymerization|positive regulation of pseudopodium assembly|regulation of cell shape	cytoplasm|cytoskeleton|endomembrane system|plasma membrane	GTP-Rho binding|Rho GTPase activator activity				0						GACGGCCCATCCCCTCTGCTC	0.677													10	40					0	0	0.000978	0	0
MAP3K11	4296	broad.mit.edu	37	11	65380868	65380868	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:65380868C>T	uc001oew.2	-	1	853	c.360G>A	c.(358-360)GAG>GAA	p.E120E	MAP3K11_uc010rol.1_5'Flank|PCNXL3_uc001oey.2_5'Flank	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	120	Protein kinase.|Gly-rich.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CGATCACCTCCTCCAGCCGCA	0.667													12	37					0	0	0.001368	0	0
SIPA1	6494	broad.mit.edu	37	11	65417654	65417654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:65417654C>T	uc001ofb.2	+	14	3061	c.2894C>T	c.(2893-2895)TCT>TTT	p.S965F	SIPA1_uc010rom.1_Missense_Mutation_p.S863F|SIPA1_uc001ofd.2_Missense_Mutation_p.S965F	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	965					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						ACTCCAAAATCTGATGCTGAG	0.607													17	82					0	0	0.001216	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793164	65793164	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:65793164G>A	uc001ogt.2	-	1	825	c.687C>T	c.(685-687)TCC>TCT	p.S229S		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	229	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CATGATGACGGGACCTGCCAT	0.582													6	31					0	0	0.001168	0	0
NPAS4	266743	broad.mit.edu	37	11	66192058	66192058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:66192058G>A	uc001ohx.1	+	7	1873	c.1697G>A	c.(1696-1698)GGA>GAA	p.G566E	NPAS4_uc010rpc.1_Missense_Mutation_p.G356E	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	566					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GCCCAGGAGGGATGCAGTTTT	0.597													52	71					0	0	0.003610	0	0
ACTN3	89	broad.mit.edu	37	11	66325598	66325598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:66325598C>T	uc001oio.1	+	11	1247	c.1229C>T	c.(1228-1230)GCT>GTT	p.A410V	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	410	Spectrin 2.				focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						CAGCACCTGGCTGAGAAGTTC	0.642													6	31					0	0	0.001984	0	0
PC	5091	broad.mit.edu	37	11	66631276	66631276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:66631276G>A	uc001ojn.1	-	10	1386	c.1337C>T	c.(1336-1338)GCC>GTC	p.A446V	PC_uc001ojo.1_Missense_Mutation_p.A446V|PC_uc001ojp.1_Missense_Mutation_p.A446V	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	446	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	CTCCGCAAGGGCCCTGCTCAT	0.657													22	83					0	0	0.002780	0	0
GPR152	390212	broad.mit.edu	37	11	67219040	67219040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:67219040G>A	uc001olm.2	-	1	1161	c.1156C>T	c.(1156-1158)CCC>TCC	p.P386S	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	386	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			TGGGCTGTGGGATCCGACTGT	0.637													22	24					0	0	0.002780	0	0
TBX10	347853	broad.mit.edu	37	11	67399824	67399824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:67399824G>A	uc001omp.2	-	7	921	c.833C>T	c.(832-834)CCC>CTC	p.P278L	NUDT8_uc001omn.2_5'Flank|NUDT8_uc001omo.1_5'Flank	NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	278					anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGCACACAGGGACTGAGGCT	0.622													18	58					0	0	0.001523	0	0
TCIRG1	10312	broad.mit.edu	37	11	67811694	67811694	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:67811694C>T	uc001one.2	+	9	1011	c.903C>T	c.(901-903)GCC>GCT	p.A301A	TCIRG1_uc001ong.2_Silent_p.A85A|TCIRG1_uc001onh.2_Silent_p.A3A|TCIRG1_uc001oni.2_5'UTR	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	301	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						AGATGAAGGCCGTGTACCTGG	0.672													4	5					0	0	0.000248	0	0
LRP5	4041	broad.mit.edu	37	11	68181183	68181183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:68181183G>A	uc001ont.2	+	12	2605	c.2530G>A	c.(2530-2532)GAT>AAT	p.D844N	LRP5_uc009ysg.2_Missense_Mutation_p.D254N	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	844	LDL-receptor class B 14.|Beta-propeller 3.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						GATTGCCGACGATCTCCCGCA	0.617													25	38					0	0	0.004656	0	0
MRGPRD	116512	broad.mit.edu	37	11	68747514	68747514	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:68747514C>T	uc010rqf.1	-	1	942	c.942G>A	c.(940-942)GTG>GTA	p.V314V		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	314	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CATTGGTGCCCACGGTGGGCG	0.687													16	29					0	0	0.003163	0	0
TPCN2	219931	broad.mit.edu	37	11	68825141	68825141	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:68825141C>T	uc001oos.2	+	5	641	c.525C>T	c.(523-525)TCC>TCT	p.S175S	TPCN2_uc009ysk.1_RNA|TPCN2_uc001oor.2_Silent_p.S90S|TPCN2_uc010rqg.1_Silent_p.S175S	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	175	Helical; Name=S3 of repeat I; (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GGACCGTGTCCCTGAGTCTCG	0.607													9	39					0	0	0.000673	0	0
FGF4	2249	broad.mit.edu	37	11	69588793	69588793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:69588793G>A	uc001opg.1	-	2	762	c.443C>T	c.(442-444)TCG>TTG	p.S148L	FGF4_uc010rqj.1_Intron	NM_002007	NP_001998	P08620	FGF4_HUMAN	fibroblast growth factor 4 precursor	148					cell-cell signaling|chondroblast differentiation|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade	extracellular region	growth factor activity|heparin binding				0	Melanoma(5;1.89e-05)		LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)		Pentosan Polysulfate(DB00686)	GGTACTCACCGAGCCATAGAG	0.652													4	21					0	0	0.000602	0	0
PDE2A	5138	broad.mit.edu	37	11	72288586	72288586	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:72288586A>G	uc010rrc.1	-	31	2911	c.2668T>C	c.(2668-2670)TCC>CCC	p.S890P	PDE2A_uc001oso.2_Missense_Mutation_p.S869P|PDE2A_uc010rra.1_Missense_Mutation_p.S883P|PDE2A_uc001osn.2_Missense_Mutation_p.S634P|PDE2A_uc010rrb.1_Missense_Mutation_p.S881P|PDE2A_uc010rrd.1_Missense_Mutation_p.S775P	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	890	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	TCACGGTTGGAGGCCACGCGC	0.617													65	295					0	0	0.003610	0	0
STARD10	10809	broad.mit.edu	37	11	72466185	72466185	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:72466185G>A	uc001osy.2	-	7	924	c.633C>T	c.(631-633)GCC>GCT	p.A211A	ARAP1_uc001osv.2_Intron|STARD10_uc001osz.3_Silent_p.A211A|STARD10_uc001ota.2_Silent_p.A165A|STARD10_uc001otb.2_Silent_p.A211A|ARAP1_uc001osu.2_5'Flank	NM_006645	NP_006636	Q9Y365	PCTL_HUMAN	START domain containing 10	211	START.										0			BRCA - Breast invasive adenocarcinoma(5;7.08e-07)			TCTTCTTCATGGCCTGTGGGC	0.667													22	98					0	0	0.003330	0	0
P4HA3	283208	broad.mit.edu	37	11	73984630	73984630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:73984630C>T	uc001ouz.2	-	10	1401	c.1358G>A	c.(1357-1359)AGA>AAA	p.R453K	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.R453K	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	453	Fe2OG dioxygenase.					endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					TGACTTCATTCTGTAGAGGGG	0.388													17	24					0	0	0.001523	0	0
P4HA3	283208	broad.mit.edu	37	11	73997402	73997402	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:73997402C>T	uc001ouz.2	-	6	847	c.804G>A	c.(802-804)TTG>TTA	p.L268L	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Silent_p.L268L	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	268						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					TTTCATATTTCAAGACATTCC	0.507													7	113					0	0	0.003080	0	0
CHRDL2	25884	broad.mit.edu	37	11	74414480	74414480	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:74414480G>A	uc001ovi.2	-	8	1069	c.816C>T	c.(814-816)TTC>TTT	p.F272F	CHRDL2_uc001ovg.2_Silent_p.F156F|CHRDL2_uc001ovh.2_Silent_p.F272F|CHRDL2_uc001ovj.1_RNA|CHRDL2_uc001ovk.1_Intron			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	272	VWFC 3.				cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					GCAAGGGGCCGAAGGCACGGA	0.642													8	16					0	0	0.004482	0	0
DGAT2	84649	broad.mit.edu	37	11	75508276	75508276	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:75508276C>T	uc001oxa.2	+	6	967	c.708C>T	c.(706-708)ATC>ATT	p.I236I	DGAT2_uc001oxb.2_Silent_p.I193I	NM_032564	NP_115953	Q96PD7	DGAT2_HUMAN	diacylglycerol O-acyltransferase 2	236	Cytoplasmic (Potential).				glycerol metabolic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	Ovarian(111;0.103)					CTATCATCATCGTGGTCGGGG	0.567													37	47					0	0	0.004878	0	0
FZD4	8322	broad.mit.edu	37	11	86666029	86666029	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:86666029C>T	uc001pce.2	-	1	405	c.99G>A	c.(97-99)CCG>CCA	p.P33P	uc001pcf.2_5'Flank	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	33			P -> S (in EVR1).		canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AGCCCCGCGCCGGCCCCAGGA	0.522													10	26					0	0	0.002450	0	0
GRM5	2915	broad.mit.edu	37	11	88780813	88780813	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:88780813C>T	uc001pcq.2	-	1	428	c.228G>A	c.(226-228)CTG>CTA	p.L76L	GRM5_uc009yvm.2_Silent_p.L76L|GRM5_uc009yvn.1_Silent_p.L76L	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	76	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	TGATCCTTTCCAGGGTATGCA	0.542													6	8					0	0	0.001984	0	0
FAT3	120114	broad.mit.edu	37	11	92086290	92086290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:92086290C>T	uc001pdj.3	+	1	1029	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	338	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGAGAGCTTTCCCTATGGCTA	0.453										TCGA Ovarian(4;0.039)			36	129					0	0	0.004289	0	0
FAT3	120114	broad.mit.edu	37	11	92577195	92577195	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:92577195G>A	uc001pdj.3	+	18	10679	c.10662G>A	c.(10660-10662)CTG>CTA	p.L3554L	FAT3_uc001pdi.3_5'UTR	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3554	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCATTCCCCTGGAAATTTTCA	0.488										TCGA Ovarian(4;0.039)			255	284					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92616278	92616278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:92616278G>A	uc001pdj.3	+	23	12673	c.12656G>A	c.(12655-12657)CGC>CAC	p.R4219H	FAT3_uc001pdi.3_Missense_Mutation_p.R659H	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4219	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGGGACGGCCGCAACGTCTAC	0.652										TCGA Ovarian(4;0.039)			104	137					0	0	0.003610	0	0
KDM4D	55693	broad.mit.edu	37	11	94731314	94731314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:94731314C>T	uc001pfe.2	+	3	1610	c.778C>T	c.(778-780)CCC>TCC	p.P260S		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	260	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						AAATGGGATTCCCTTCAATCG	0.567													25	64					0	0	0.004656	0	0
TRPC6	7225	broad.mit.edu	37	11	101374855	101374855	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:101374855C>A	uc001pgk.3	-	2	1270	c.845G>T	c.(844-846)AGT>ATT	p.S282I	TRPC6_uc009ywy.2_Missense_Mutation_p.S282I|TRPC6_uc009ywz.1_Missense_Mutation_p.S282I	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	282	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		GTAAGCCGGACTTGCCAGGCC	0.438													36	51					1.07121e-22	2.1185e-22	0.001485	1	0
CUL5	8065	broad.mit.edu	37	11	107920788	107920788	+	Nonsense_Mutation	SNP	C	T	T	rs138143013		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:107920788C>T	uc001pjv.2	+	4	1073	c.406C>T	c.(406-408)CGA>TGA	p.R136*	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	136					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		CAGTATTGTTCGAAAGGTAAG	0.308													23	34					0	0	0.003330	0	0
ATM	472	broad.mit.edu	37	11	108124634	108124634	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:108124634C>T	uc001pkb.1	+	13	2377	c.1992C>T	c.(1990-1992)ACC>ACT	p.T664T	ATM_uc009yxr.1_Silent_p.T664T	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	664					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		ACTTTTTAACCATTGTGAGAG	0.388			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			12	33					0	0	0.001855	0	0
EXPH5	23086	broad.mit.edu	37	11	108409798	108409798	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:108409798C>T	uc001pkk.2	-	3	507	c.396G>A	c.(394-396)AGG>AGA	p.R132R	EXPH5_uc010rvy.1_5'Flank|EXPH5_uc010rvz.1_5'Flank|EXPH5_uc010rwa.1_Silent_p.R56R	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	132					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TTCCAGATTTCCTGAATGAGA	0.423													36	46					0	0	0.001485	0	0
HTR3B	9177	broad.mit.edu	37	11	113803757	113803757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:113803757C>T	uc001pok.2	+	6	705	c.638C>T	c.(637-639)TCC>TTC	p.S213F	HTR3B_uc001pol.2_Missense_Mutation_p.S202F	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	213	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		CTATCTGTGTCCTCCACATAC	0.498													12	16					0	0	0.001855	0	0
MLL	4297	broad.mit.edu	37	11	118343024	118343024	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:118343024C>T	uc001pta.2	+	3	1173	c.1150C>T	c.(1150-1152)CAA>TAA	p.Q384*	MLL_uc001ptb.2_Nonsense_Mutation_p.Q384*|MLL_uc001psz.1_Nonsense_Mutation_p.Q417*|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	384					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AAAGGGGGCTCAAAAGAAAAT	0.423			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								26	17					0	0	0.003954	0	0
TTC36	143941	broad.mit.edu	37	11	118399448	118399448	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:118399448G>A	uc001ptg.1	+	2	249	c.249G>A	c.(247-249)GAG>GAA	p.E83E	TTC36_uc010ryb.1_RNA|TTC36_uc010ryc.1_Silent_p.E24E|TMEM25_uc010ryd.1_5'Flank|TMEM25_uc001ptk.3_5'Flank|TMEM25_uc010rye.1_5'Flank|TMEM25_uc001pth.2_5'Flank|TMEM25_uc009zad.2_5'Flank|TMEM25_uc001pti.2_5'Flank|TMEM25_uc010ryf.1_5'Flank|TMEM25_uc001ptl.2_5'Flank|TMEM25_uc001ptm.2_5'Flank	NM_001080441	NP_001073910	A6NLP5	TTC36_HUMAN	tetratricopeptide repeat domain 36	83	TPR 1.						binding				0						TGCTGCCTGAGAGGGCTTCAG	0.647													11	16					0	0	0.001855	0	0
OR6X1	390260	broad.mit.edu	37	11	123624513	123624513	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:123624513G>A	uc010rzy.1	-	1	714	c.714C>T	c.(712-714)ACC>ACT	p.T238T		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		GCGAGGCACAGGTAGAGAAAG	0.468													4	19					0	0	0.000248	0	0
OR10G7	390265	broad.mit.edu	37	11	123909373	123909373	+	Silent	SNP	G	A	A	rs141545635	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:123909373G>A	uc001pzq.1	-	1	336	c.336C>T	c.(334-336)TTC>TTT	p.F112F		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CTGTGTAGAGGAAACACTCGG	0.567													20	42					0	0	0.004656	0	0
HEPACAM	220296	broad.mit.edu	37	11	124793282	124793282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr11:124793282G>A	uc001qbk.2	-	4	1163	c.757C>T	c.(757-759)CTT>TTT	p.L253F	HEPACAM_uc009zbj.2_5'UTR|HEPACAM_uc001qbl.1_Missense_Mutation_p.L253F	NM_152722	NP_689935	Q14CZ8	HECAM_HUMAN	hepatocyte cell adhesion molecule precursor	253	Helical; (Potential).				cell adhesion|cell cycle arrest|regulation of growth	cytoplasm|integral to membrane				pancreas(1)	1	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.54e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		AAGGTCACAAGGAGGAAGATG	0.517													31	45					0	0	0.002836	0	0
IQSEC3	440073	broad.mit.edu	37	12	278263	278263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:278263C>T	uc001qhw.1	+	9	2153	c.2147C>T	c.(2146-2148)TCG>TTG	p.S716L	IQSEC3_uc001qhu.1_Missense_Mutation_p.S716L	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	1019					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		AAGCAAGGATCGCCGACAGGT	0.642													15	35					0	0	0.003163	0	0
CACNA1C	775	broad.mit.edu	37	12	2224708	2224708	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:2224708G>A	uc009zdu.1	+	2	681	c.368G>A	c.(367-369)TGG>TAG	p.W123*	CACNA1C_uc009zdv.1_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkb.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkc.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qke.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkf.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qjz.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkd.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkg.2_Nonsense_Mutation_p.W123*|CACNA1C_uc009zdw.1_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkh.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkl.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkn.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qko.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkp.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkr.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qku.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkq.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qks.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkt.2_Nonsense_Mutation_p.W123*	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	123	Cytoplasmic (Potential).|I.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ATTGTCGAATGGAAATATCCT	0.647													10	41					0	0	0.000673	0	0
CACNA1C	775	broad.mit.edu	37	12	2719789	2719789	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:2719789A>G	uc009zdu.1	+	29	4014	c.3701A>G	c.(3700-3702)TAC>TGC	p.Y1234C	CACNA1C_uc009zdv.1_Missense_Mutation_p.Y1211C|CACNA1C_uc001qkb.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkc.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qke.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkf.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qjz.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkd.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkg.2_Missense_Mutation_p.Y1214C|CACNA1C_uc009zdw.1_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkh.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkl.2_Missense_Mutation_p.Y1234C|CACNA1C_uc001qkn.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qko.2_Missense_Mutation_p.Y1234C|CACNA1C_uc001qkp.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkr.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qku.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkq.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qks.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qkt.2_Missense_Mutation_p.Y1214C|CACNA1C_uc001qka.1_Missense_Mutation_p.Y749C|CACNA1C_uc001qki.1_Missense_Mutation_p.Y950C|CACNA1C_uc001qkj.1_Missense_Mutation_p.Y950C|CACNA1C_uc001qkk.1_Missense_Mutation_p.Y950C|CACNA1C_uc001qkm.1_Missense_Mutation_p.Y950C	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1234	Cytoplasmic (Potential).|IV.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AAAGTGTGGTACGTGGTCAAC	0.602													16	39					0	0	0.004007	0	0
PARP11	57097	broad.mit.edu	37	12	3931093	3931093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:3931093C>T	uc001qmk.1	-	5	528	c.473G>A	c.(472-474)CGA>CAA	p.R158Q	PARP11_uc001qml.2_Missense_Mutation_p.R165Q|PARP11_uc009zef.2_RNA|PARP11_uc001qmm.2_Missense_Mutation_p.R84Q|PARP11_uc001qmn.2_Missense_Mutation_p.R84Q	NM_020367	NP_065100	Q9NR21	PAR11_HUMAN	poly (ADP-ribose) polymerase family, member 11	158	PARP catalytic.						NAD+ ADP-ribosyltransferase activity			ovary(1)|central_nervous_system(1)	2			all cancers(3;1.58e-07)|OV - Ovarian serous cystadenocarcinoma(31;0.00287)|GBM - Glioblastoma multiforme(3;0.0141)|COAD - Colon adenocarcinoma(12;0.0264)			TCTTTTAATTCGGTTGCGATC	0.348													39	48					0	0	0.001287	0	0
VWF	7450	broad.mit.edu	37	12	6127662	6127662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:6127662C>T	uc001qnn.1	-	28	5172	c.4922G>A	c.(4921-4923)AGG>AAG	p.R1641K	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1641	VWFA 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CCAGCCAATCCTCTCCAGCTC	0.612													27	24					0	0	0.001786	0	0
NCAPD2	9918	broad.mit.edu	37	12	6637358	6637358	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:6637358C>A	uc001qoo.2	+	25	3209	c.3163C>A	c.(3163-3165)CAG>AAG	p.Q1055K	NCAPD2_uc009zen.1_Missense_Mutation_p.Q927K|NCAPD2_uc010sfd.1_Missense_Mutation_p.Q1010K	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	1055					cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						CTGCGACTCCCAGCTTCGTCT	0.532													48	137					2.01872e-29	3.99783e-29	0.003610	1	0
CHD4	1108	broad.mit.edu	37	12	6692249	6692249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:6692249G>A	uc001qpo.2	-	27	4255	c.4091C>T	c.(4090-4092)TCC>TTC	p.S1364F	CHD4_uc001qpn.2_Missense_Mutation_p.S1357F|CHD4_uc001qpp.2_Missense_Mutation_p.S1389F|uc001qpq.1_3'UTR|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1364					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TGAGTAATCGGACTGGTTGTC	0.547													22	71					0	0	0.002299	0	0
CHD4	1108	broad.mit.edu	37	12	6700880	6700880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:6700880G>A	uc001qpo.2	-	21	3366	c.3202C>T	c.(3202-3204)CGT>TGT	p.R1068C	CHD4_uc001qpn.2_Missense_Mutation_p.R1061C|CHD4_uc001qpp.2_Missense_Mutation_p.R1065C	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1068	Helicase C-terminal.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ATGAGTACACGATGCCCACCC	0.468													35	84					0	0	0.005524	0	0
LAG3	3902	broad.mit.edu	37	12	6884007	6884007	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:6884007T>G	uc001qqt.3	+	4	1107	c.758T>G	c.(757-759)ATC>AGC	p.I253S	LAG3_uc001qqs.2_Missense_Mutation_p.I253S|LAG3_uc001qqu.2_Missense_Mutation_p.I83S	NM_002286	NP_002277	P18627	LAG3_HUMAN	lymphocyte-activation protein 3 precursor	253	Extracellular (Potential).					integral to membrane	antigen binding|MHC class II protein binding				0						AACGTCTCCATCATGTATAAC	0.557													44	53					0	0	0.003610	0	0
PEX5	5830	broad.mit.edu	37	12	7362674	7362674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:7362674C>T	uc009zfu.1	+	17	2355	c.1775C>T	c.(1774-1776)CCC>CTC	p.P592L	PEX5_uc001qsw.2_Missense_Mutation_p.P592L|PEX5_uc010sgc.1_Missense_Mutation_p.P607L|PEX5_uc001qsu.2_Missense_Mutation_p.P555L|PEX5_uc010sgd.1_Missense_Mutation_p.P613L|PEX5_uc001qsv.2_Missense_Mutation_p.P584L	NM_001131026	NP_001124498	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5 isoform d	592					protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			ovary(1)	1						AGCCGGGGCCCCCGGGGTGAA	0.572													9	17					0	0	0.000443	0	0
CD163L1	283316	broad.mit.edu	37	12	7531782	7531782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:7531782C>T	uc001qsy.2	-	9	2189	c.2163G>A	c.(2161-2163)ATG>ATA	p.M721I	CD163L1_uc010sge.1_Missense_Mutation_p.M731I	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	721	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CAGCAATGTTCATTCCCCAGC	0.488													12	62					0	0	0.001855	0	0
CD163	9332	broad.mit.edu	37	12	7653894	7653894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:7653894C>T	uc001qsz.3	-	3	426	c.298G>A	c.(298-300)GCC>ACC	p.A100T	CD163_uc001qta.3_Missense_Mutation_p.A100T|CD163_uc009zfw.2_Missense_Mutation_p.A100T	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	100	SRCR 1.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CATCCAGGGGCTTTGATAGCA	0.498													7	54					0	0	0.001984	0	0
APOBEC1	339	broad.mit.edu	37	12	7805421	7805421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:7805421C>T	uc001qtb.2	-	3	89	c.55G>A	c.(55-57)GAA>AAA	p.E19K	APOBEC1_uc001qtc.2_5'UTR|APOBEC1_uc010sgf.1_Missense_Mutation_p.E19K	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	19					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						TCCCAGGGTTCGATTCTTCTC	0.453													33	46					0	0	0.004878	0	0
GDF3	9573	broad.mit.edu	37	12	7848100	7848100	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:7848100C>T	uc001qte.2	-	1	261	c.225G>A	c.(223-225)GAG>GAA	p.E75E		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	75					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGACGCCCAGCTCCTTTACGT	0.493													38	46					0	0	0.004878	0	0
CLEC4C	170482	broad.mit.edu	37	12	7882210	7882210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:7882210C>T	uc001qtg.1	-	6	798	c.624G>A	c.(622-624)ATG>ATA	p.M208I	CLEC4C_uc001qth.1_Missense_Mutation_p.M208I|CLEC4C_uc001qti.1_Missense_Mutation_p.M177I	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	208	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		AGATCTTCTTCATCTTGCAAA	0.363													26	37					0	0	0.004656	0	0
SLC2A14	144195	broad.mit.edu	37	12	7973829	7973829	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:7973829G>A	uc001qtk.2	-	13	1819	c.1026C>T	c.(1024-1026)TTC>TTT	p.F342F	SLC2A14_uc001qtl.2_Silent_p.F319F|SLC2A14_uc001qtm.2_Silent_p.F319F|SLC2A14_uc010sgg.1_Silent_p.F233F|SLC2A14_uc001qtn.2_Silent_p.F342F|SLC2A14_uc001qto.2_5'UTR|SLC2A14_uc010sgh.1_Silent_p.F357F	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	342	Helical; Name=8; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		AAAGTAAAGTGAAGATAGTAT	0.428													42	82					0	0	0.002852	0	0
PZP	5858	broad.mit.edu	37	12	9305726	9305726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:9305726G>A	uc001qvl.2	-	30	4017	c.3988C>T	c.(3988-3990)CTT>TTT	p.L1330F	PZP_uc009zgl.2_Missense_Mutation_p.L1116F	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						CCTACCTGAAGATACACACAT	0.438													39	35					0	0	0.001485	0	0
CSDA	8531	broad.mit.edu	37	12	10856689	10856689	+	Missense_Mutation	SNP	G	A	A	rs141479423	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:10856689G>A	uc001qyt.2	-	7	1082	c.839C>T	c.(838-840)CCG>CTG	p.P280L	CSDA_uc001qyu.2_Missense_Mutation_p.P211L	NM_003651	NP_003642	P16989	DBPA_HUMAN	cold shock domain protein A isoform a	280					negative regulation of transcription from RNA polymerase II promoter|response to cold	cytoplasm|nucleus	double-stranded DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|lung(1)|large_intestine(1)	4	Glioma(1;0.155)					TCGATGAACCGGTCCCTGAAG	0.507													42	80					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11546329	11546329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:11546329C>T	uc010shk.1	-	3	718	c.683G>A	c.(682-684)GGA>GAA	p.G228E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTTGTTGTCTCCTTGTGGGGG	0.612													100	132					0	0	0.003610	0	0
GRIN2B	2904	broad.mit.edu	37	12	13715781	13715781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:13715781G>A	uc001rbt.2	-	13	4570	c.4391C>T	c.(4390-4392)GCT>GTT	p.A1464V		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1464	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCCATTGAAAGCCCTGGGGTT	0.522													51	68					0	0	0.003610	0	0
PLBD1	79887	broad.mit.edu	37	12	14706247	14706247	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:14706247T>G	uc001rcc.1	-	2	376	c.215A>C	c.(214-216)AAC>ACC	p.N72T		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	72					lipid catabolic process	extracellular region	hydrolase activity				0						TTTCACAGAGTTATTGTAAAA	0.463													27	42					0	0	0.004656	0	0
PLCZ1	89869	broad.mit.edu	37	12	18865877	18865877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:18865877C>T	uc010sid.1	-	6	804	c.613G>A	c.(613-615)GAT>AAT	p.D205N	PLCZ1_uc001rdv.3_Missense_Mutation_p.D101N|PLCZ1_uc001rdw.3_Intron|PLCZ1_uc001rdu.1_5'UTR|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	205	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					TGTGCTCCATCCCAGCAGTCA	0.373													6	30					0	0	0.001168	0	0
PDE3A	5139	broad.mit.edu	37	12	20807040	20807040	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:20807040G>T	uc001reh.1	+	15	3107	c.3085G>T	c.(3085-3087)GAC>TAC	p.D1029Y		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1029	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	ATGGGTGGAAGACAGCGATGA	0.478													27	43					1.13719e-10	2.22969e-10	0.001512	1	0
SLCO1C1	53919	broad.mit.edu	37	12	20868116	20868116	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:20868116C>T	uc001rej.3	+	7	928	c.573C>T	c.(571-573)TTC>TTT	p.F191F	SLCO1C1_uc010sii.1_Silent_p.F191F|SLCO1C1_uc010sij.1_Intron|SLCO1C1_uc009zip.2_Silent_p.F25F|SLCO1C1_uc001rei.2_Silent_p.F191F|SLCO1C1_uc010sik.1_Silent_p.F73F	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	191	Helical; Name=4; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TTTATGTTTTCCTGGGCAATC	0.398													60	89					0	0	0.003610	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20874906	20874906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:20874906C>T	uc001rej.3	+	9	1299	c.944C>T	c.(943-945)TCC>TTC	p.S315F	SLCO1C1_uc010sii.1_Missense_Mutation_p.S315F|SLCO1C1_uc010sij.1_Missense_Mutation_p.S266F|SLCO1C1_uc009zip.2_Missense_Mutation_p.S149F|SLCO1C1_uc001rei.2_Missense_Mutation_p.S315F|SLCO1C1_uc010sik.1_Missense_Mutation_p.S197F	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	315	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TCTGAGAAATCCAAGTTTATT	0.373													12	18					0	0	0.001368	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21054322	21054322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:21054322G>A	uc001rek.2	+	14	1912	c.1786G>A	c.(1786-1788)GAT>AAT	p.D596N	SLCO1B3_uc001rel.2_Missense_Mutation_p.D596N|SLCO1B3_uc010sil.1_Missense_Mutation_p.D596N|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.D421N	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	596	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GGCTCTGATTGATAAAACATG	0.378													40	57					0	0	0.003214	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205068	21205068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:21205068C>T	uc010sin.1	+	9	1229	c.1229C>T	c.(1228-1230)TCT>TTT	p.S410F	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.S457F	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	410						membrane	transporter activity				0						GTACCACTTTCTTATTGCAAC	0.308													4	3					0	0	0.000248	0	0
ABCC9	10060	broad.mit.edu	37	12	21971127	21971127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:21971127G>A	uc001rfi.1	-	30	3748	c.3728C>T	c.(3727-3729)TCG>TTG	p.S1243L	ABCC9_uc001rfh.2_Missense_Mutation_p.S1243L|ABCC9_uc001rfj.1_Missense_Mutation_p.S1207L	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1243	Extracellular (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCCAGAATTCGAAGACCCACT	0.328													17	99					0	0	0.004990	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30884430	30884430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:30884430C>T	uc001rji.1	-	6	1658	c.907G>A	c.(907-909)GAT>AAT	p.D303N	CAPRIN2_uc001rjf.1_Missense_Mutation_p.D100N|CAPRIN2_uc001rjg.1_5'UTR|CAPRIN2_uc001rjh.1_Missense_Mutation_p.D303N|CAPRIN2_uc001rjj.1_5'UTR|CAPRIN2_uc001rjk.3_Missense_Mutation_p.D303N|CAPRIN2_uc001rjl.3_Missense_Mutation_p.D303N|CAPRIN2_uc001rjm.1_5'UTR|CAPRIN2_uc001rjn.1_5'UTR	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	303					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GACAGTAGATCCTTCAAGTGT	0.348													4	42					0	0	0.000248	0	0
DDX11	1663	broad.mit.edu	37	12	31242042	31242042	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:31242042C>A	uc001rjt.1	+	7	1000	c.749C>A	c.(748-750)CCC>CAC	p.P250H	DDX11_uc010sjw.1_Missense_Mutation_p.P250H|DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Missense_Mutation_p.P250H|DDX11_uc001rjs.1_Missense_Mutation_p.P250H|DDX11_uc001rju.1_5'UTR|DDX11_uc001rjv.1_Missense_Mutation_p.P250H|DDX11_uc001rjw.1_Missense_Mutation_p.P224H|DDX11_uc001rjx.1_5'UTR|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	250	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					AAGAAGAGCCCCTTTGGCAAG	0.522										Multiple Myeloma(12;0.14)			6	49					8.12818e-05	0.000158368	0.001984	1	0
H3F3C	440093	broad.mit.edu	37	12	31944860	31944860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:31944860C>T	uc001rkr.2	-	1	316	c.241G>A	c.(241-243)GAC>AAC	p.D81N		NM_001013699	NP_001013721	Q6NXT2	H3C_HUMAN	histone H3-like	81					nucleosome assembly	nucleosome|nucleus	DNA binding				0						AACCTCAGGTCAGTGTTGAAA	0.577										HNSCC(67;0.2)			20	53					0	0	0.002299	0	0
PKP2	5318	broad.mit.edu	37	12	32996185	32996185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:32996185G>A	uc001rlj.3	-	6	1556	c.1441C>T	c.(1441-1443)CCC>TCC	p.P481S	PKP2_uc001rlk.3_Intron|PKP2_uc010skj.1_Intron	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	481					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					aaagtgctgggattacaggcg	0.149													7	28					0	0	0.001984	0	0
PKP2	5318	broad.mit.edu	37	12	33031073	33031073	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:33031073C>T	uc001rlj.3	-	3	856	c.741G>A	c.(739-741)GGG>GGA	p.G247G	PKP2_uc001rlk.3_Silent_p.G247G|PKP2_uc010skj.1_Silent_p.G247G	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	247					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGCGGCTGGTCCCTGGCCTGG	0.622													14	31					0	0	0.001855	0	0
SYT10	341359	broad.mit.edu	37	12	33532801	33532801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:33532801C>T	uc001rll.1	-	6	1763	c.1466G>A	c.(1465-1467)CGA>CAA	p.R489Q	SYT10_uc009zju.1_Missense_Mutation_p.R299Q	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	489	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TATTGGTTTTCGATGATAGGC	0.453													18	49					0	0	0.001216	0	0
SYT10	341359	broad.mit.edu	37	12	33592343	33592343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:33592343G>A	uc001rll.1	-	1	412	c.115C>T	c.(115-117)CCT>TCT	p.P39S	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	39	Vesicular (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					CTGTCCCGAGGGAAGATGCCC	0.682													31	66					0	0	0.001786	0	0
PUS7L	83448	broad.mit.edu	37	12	44148979	44148979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:44148979G>A	uc001rnq.3	-	2	559	c.70C>T	c.(70-72)CAT>TAT	p.H24Y	PUS7L_uc001rnr.3_Missense_Mutation_p.H24Y|PUS7L_uc001rns.3_Missense_Mutation_p.H24Y|PUS7L_uc009zkb.2_Intron	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	24					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		ATAGTGCCATGAAATCCAACG	0.328													19	24					0	0	0.006122	0	0
PUS7L	83448	broad.mit.edu	37	12	44148981	44148981	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:44148981A>T	uc001rnq.3	-	2	557	c.68T>A	c.(67-69)TTT>TAT	p.F23Y	PUS7L_uc001rnr.3_Missense_Mutation_p.F23Y|PUS7L_uc001rns.3_Missense_Mutation_p.F23Y|PUS7L_uc009zkb.2_Intron	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	23					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		AGTGCCATGAAATCCAACGTG	0.328													18	24					0	0	0.004990	0	0
PLEKHA9	51054	broad.mit.edu	37	12	45567771	45567771	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:45567771G>A	uc001rom.1	-	3	915	c.378C>T	c.(376-378)TCC>TCT	p.S126S	PLEKHA9_uc009zke.2_Silent_p.S126S	NM_015899	NP_056983			pleckstrin homology domain containing, family A												0	Lung SC(27;0.192)|Renal(347;0.236)			GBM - Glioblastoma multiforme(48;0.173)		TCAAATATAAGGAATTCTTAT	0.328													9	53					0	0	0.000673	0	0
ARID2	196528	broad.mit.edu	37	12	46230691	46230691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:46230691C>T	uc001ros.1	+	8	940	c.940C>T	c.(940-942)CGT>TGT	p.R314C	ARID2_uc001ror.2_Missense_Mutation_p.R314C|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	314	LXXLL.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TACCTGTCTTCGTTTCCTATT	0.398													20	66					0	0	0.000958	0	0
SLC38A1	81539	broad.mit.edu	37	12	46633496	46633496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:46633496C>T	uc001rpa.2	-	3	346	c.88G>A	c.(88-90)GAT>AAT	p.D30N	SLC38A1_uc001rpb.2_Missense_Mutation_p.D30N|SLC38A1_uc001rpc.2_Missense_Mutation_p.D30N|SLC38A1_uc001rpd.2_Missense_Mutation_p.D30N|SLC38A1_uc001rpe.2_Missense_Mutation_p.D30N|SLC38A1_uc010slh.1_Intron|SLC38A1_uc009zkj.1_Missense_Mutation_p.D30N	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	30	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TCGGTGAAATCATTGGAGTCA	0.333													16	69					0	0	0.000958	0	0
SLC38A4	55089	broad.mit.edu	37	12	47170749	47170749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:47170749G>A	uc001rpi.2	-	13	1511	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F	SLC38A4_uc001rpj.2_Missense_Mutation_p.S371F	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	371	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CCCCGTGATGGAAATATTTGA	0.398													6	7					0	0	0.004482	0	0
COL2A1	1280	broad.mit.edu	37	12	48372520	48372520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:48372520G>A	uc001rqu.2	-	42	2936	c.2755C>T	c.(2755-2757)CCC>TCC	p.P919S	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.P850S	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	919	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGACCAGGGGGACCAGGGGGT	0.617													10	32					0	0	0.000978	0	0
SENP1	29843	broad.mit.edu	37	12	48477454	48477454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:48477454G>A	uc001rqx.2	-	6	918	c.472C>T	c.(472-474)CCA>TCA	p.P158S	SENP1_uc001rqw.2_Missense_Mutation_p.P158S|SENP1_uc001rqy.2_5'UTR|SENP1_uc001rqz.2_5'UTR|SENP1_uc009zkx.2_Missense_Mutation_p.P158S	NM_014554	NP_055369	Q9P0U3	SENP1_HUMAN	sentrin/SUMO-specific protease 1	158	Ser-rich.				activation of caspase activity|induction of apoptosis by extracellular signals|protein desumoylation|proteolysis	cytoplasm|nucleus	endopeptidase activity|SUMO-specific protease activity			pancreas(2)|lung(1)	3		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)				CTCCAAGATGGACTTGGAACA	0.403													37	43					0	0	0.004878	0	0
OR8S1	341568	broad.mit.edu	37	12	48919535	48919535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:48919535G>A	uc010slu.1	+	1	121	c.121G>A	c.(121-123)GAA>AAA	p.E41K		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GACCATAATGGAAAACCTGAT	0.512													57	92					0	0	0.003610	0	0
DDX23	9416	broad.mit.edu	37	12	49228130	49228130	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:49228130C>T	uc001rsm.2	-	12	1624	c.1533G>A	c.(1531-1533)CAG>CAA	p.Q511Q		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	511	Helicase ATP-binding.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						GCCTGAAGCCCTGGTCTTCTC	0.512													15	28					0	0	0.006122	0	0
MLL2	8085	broad.mit.edu	37	12	49434611	49434611	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:49434611G>A	uc001rta.3	-	31	6942	c.6942C>T	c.(6940-6942)ACC>ACT	p.T2314T		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2314	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CACCCAGGTGGGTGCCTGAGG	0.612			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			9	26					0	0	0.000443	0	0
TUBA1B	10376	broad.mit.edu	37	12	49521749	49521749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:49521749C>T	uc001rtm.2	-	4	1569	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K	TUBA1B_uc001rto.2_Missense_Mutation_p.E415K|TUBA1B_uc001rtk.2_Missense_Mutation_p.E415K|TUBA1B_uc001rtl.2_Missense_Mutation_p.E415K|TUBA1B_uc001rtn.2_Missense_Mutation_p.E297K|uc010smg.1_5'UTR	NM_006082	NP_006073	P68363	TBA1B_HUMAN	tubulin, alpha, ubiquitous	450					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding				0						AATTAGTATTCCTCTCCTTCT	0.463													54	54					0	0	0.003610	0	0
FAIM2	23017	broad.mit.edu	37	12	50264310	50264310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:50264310G>A	uc001rvj.1	-	12	1073	c.928C>T	c.(928-930)CTT>TTT	p.L310F	FAIM2_uc001rvi.1_Missense_Mutation_p.L264F|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	310	Helical; (Potential).				anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						GTGCCAAAAAGCTGCAGGAAG	0.562													43	53					0	0	0.003610	0	0
TFCP2	7024	broad.mit.edu	37	12	51493552	51493552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:51493552G>A	uc001rxw.2	-	12	1621	c.1162C>T	c.(1162-1164)CCA>TCA	p.P388S	TFCP2_uc001rxv.1_Missense_Mutation_p.P388S|TFCP2_uc009zlx.1_Missense_Mutation_p.P337S|TFCP2_uc001rxx.2_Missense_Mutation_p.P310S|TFCP2_uc009zly.1_Missense_Mutation_p.P290S	NM_005653	NP_005644	Q12800	TFCP2_HUMAN	transcription factor CP2	388	DNA-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTTAACCTTGGACGCACCATC	0.318													10	17					0	0	0.000673	0	0
ACVRL1	94	broad.mit.edu	37	12	52309221	52309221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:52309221C>T	uc001rzj.2	+	7	1268	c.985C>T	c.(985-987)CGC>TGC	p.R329C	ACVRL1_uc001rzk.2_Missense_Mutation_p.R329C|ACVRL1_uc010snm.1_Missense_Mutation_p.R155C	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	329	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CATTGCCCACCGCGACTTCAA	0.657									Hereditary_Hemorrhagic_Telangiectasia				16	22					0	0	0.004007	0	0
KRT80	144501	broad.mit.edu	37	12	52566898	52566898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:52566898C>T	uc001rzx.2	-	6	979	c.881G>A	c.(880-882)AGC>AAC	p.S294N	KRT80_uc001rzw.2_Missense_Mutation_p.S329N|KRT80_uc001rzy.2_Missense_Mutation_p.S294N	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	294	Rod.|Coil 2.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		GCTGCGGCTGCTCTGGAGGCT	0.647													8	14					0	0	0.004482	0	0
KRT75	9119	broad.mit.edu	37	12	52825840	52825840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:52825840C>T	uc001saj.2	-	3	746	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	242	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		TTGTTAATTTCATCTTCGTAC	0.413													6	37					0	0	0.001984	0	0
KRT74	121391	broad.mit.edu	37	12	52966262	52966262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:52966262C>T	uc001sap.1	-	2	709	c.661G>A	c.(661-663)GAT>AAT	p.D221N		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	221	Coil 1B.|Rod.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		TCCACCAGATCCCTCATGCTT	0.582													9	62					0	0	0.000673	0	0
KRT72	140807	broad.mit.edu	37	12	52992684	52992684	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:52992684C>T	uc001sar.2	-	2	725	c.639G>A	c.(637-639)AAG>AAA	p.K213K	KRT72_uc001saq.2_Silent_p.K213K|KRT72_uc010sns.1_Silent_p.K213K|KRT72_uc010snt.1_Silent_p.K25K	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	213	Coil 1B.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		TCACTCACCTCTTCTTGTAGT	0.512													22	69					0	0	0.002780	0	0
KRT4	3851	broad.mit.edu	37	12	53207450	53207450	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:53207450C>T	uc001saz.2	-	1	886	c.615G>A	c.(613-615)CAG>CAA	p.Q205Q		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	131						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						TCCGGACTTTCTGGATCTCAG	0.597													54	69					0	0	0.003610	0	0
KRT78	196374	broad.mit.edu	37	12	53242363	53242363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:53242363G>A	uc001sbc.1	-	1	416	c.352C>T	c.(352-354)CTC>TTC	p.L118F		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	118	Coil 1A.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						TGGTTGTTGAGGGTTCTGATC	0.542													14	24					0	0	0.002450	0	0
KRT18	3875	broad.mit.edu	37	12	53344144	53344144	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:53344144C>T	uc001sbe.2	+	3	519	c.450C>T	c.(448-450)ATC>ATT	p.I150I	KRT18_uc009zmn.1_Silent_p.I150I|KRT18_uc001sbf.1_5'UTR|KRT18_uc001sbg.2_Silent_p.I150I|KRT18_uc009zmo.2_Silent_p.I150I|KRT8_uc009zml.1_5'Flank|KRT8_uc009zmm.1_5'Flank	NM_199187	NP_954657	P05783	K1C18_HUMAN	keratin 18	150	Coil 1B.|Rod.|Necessary for interaction with PNN.				anatomical structure morphogenesis|cell cycle|Golgi to plasma membrane CFTR protein transport|interspecies interaction between organisms|negative regulation of apoptosis	centriolar satellite|keratin filament|perinuclear region of cytoplasm	protein binding|structural molecule activity			skin(1)	1						ATGCCCGCATCGTTCTGCAGA	0.512													189	271					0	0	0.003610	0	0
AMHR2	269	broad.mit.edu	37	12	53819593	53819593	+	Missense_Mutation	SNP	G	A	A	rs146554515		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:53819593G>A	uc001scx.1	+	6	820	c.742G>A	c.(742-744)GAA>AAA	p.E248K	AMHR2_uc009zmy.1_Missense_Mutation_p.E248K	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	248	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding	p.E248K(1)		ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	AGCATTGTACGAACTTCCAGG	0.597									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				9	39					0	0	0.004482	0	0
HOXC10	3226	broad.mit.edu	37	12	54379302	54379302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:54379302C>T	uc001sen.2	+	1	357	c.259C>T	c.(259-261)CGC>TGC	p.R87C		NM_017409	NP_059105	Q9NYD6	HXC10_HUMAN	homeobox C10	87					positive regulation of cell proliferation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1						AGCCGCCTATCGCCTGGAACA	0.632													18	58					0	0	0.001882	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54932736	54932736	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:54932736C>T	uc001sgc.3	+	30	3331	c.3252C>T	c.(3250-3252)TCC>TCT	p.S1084S	NCKAP1L_uc010sox.1_Silent_p.S626S|NCKAP1L_uc010soy.1_Silent_p.S1034S	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1084					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						ATCGAGAATCCATTTCTCTGC	0.453													7	33					0	0	0.000443	0	0
OR6C70	390327	broad.mit.edu	37	12	55863785	55863785	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:55863785G>A	uc010spn.1	-	1	138	c.138C>T	c.(136-138)CTC>CTT	p.L46L		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	46	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCAGCAGAATGAGGGCAATGA	0.388													10	22					0	0	0.000673	0	0
OR6C68	403284	broad.mit.edu	37	12	55886345	55886345	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:55886345C>T	uc010spo.1	+	1	199	c.199C>T	c.(199-201)CAA>TAA	p.Q67*		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTTTTTTCTCCAAAATTTATC	0.363													17	79					0	0	0.006122	0	0
OR6C4	341418	broad.mit.edu	37	12	55945033	55945033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:55945033G>A	uc010spp.1	+	1	23	c.23G>A	c.(22-24)GGT>GAT	p.G8D		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCATGTTTGGTGAGTTTATT	0.373													16	24					0	0	0.004990	0	0
ITGA7	3679	broad.mit.edu	37	12	56087064	56087064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:56087064G>A	uc001shh.2	-	20	2805	c.2585C>T	c.(2584-2586)TCT>TTT	p.S862F	ITGA7_uc001shg.2_Missense_Mutation_p.S858F|ITGA7_uc010sps.1_Missense_Mutation_p.S765F|ITGA7_uc009znw.2_Missense_Mutation_p.S105F|ITGA7_uc009znx.2_Missense_Mutation_p.S739F	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	902	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GAGGAAGGCAGAGCCCAGGGT	0.507													17	51					0	0	0.006122	0	0
CS	1431	broad.mit.edu	37	12	56679769	56679769	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:56679769C>T	uc001sks.1	-	3	322	c.132G>A	c.(130-132)GAG>GAA	p.E44E	CS_uc010sql.1_Silent_p.E31E|CS_uc001skr.1_5'UTR|CS_uc001skt.1_Intron|CS_uc010sqm.1_5'UTR	NM_004077	NP_004068	O75390	CISY_HUMAN	citrate synthase precursor	44					cellular carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	citrate (Si)-synthase activity				0		Myeloproliferative disorder(1001;0.000374)		BRCA - Breast invasive adenocarcinoma(357;6.17e-07)		TTCTGGCCTGCTCCTTAGGTA	0.428													47	199					0	0	0.003610	0	0
RBMS2	5939	broad.mit.edu	37	12	56965567	56965567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:56965567C>T	uc001sln.2	+	5	669	c.470C>T	c.(469-471)CCC>CTC	p.P157L	RBMS2_uc010sqp.1_Intron|RBMS2_uc010sqq.1_Missense_Mutation_p.P32L|RBMS2_uc009zou.2_5'UTR	NM_002898	NP_002889	Q15434	RBMS2_HUMAN	RNA binding motif, single stranded interacting	157	RRM 2.				RNA processing	nucleus	nucleotide binding|RNA binding				0						ATGCTGAAGCCCTTTGGCCAG	0.512													20	33					0	0	0.000958	0	0
LRP1	4035	broad.mit.edu	37	12	57569831	57569831	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:57569831C>T	uc001snd.2	+	24	4399	c.3933C>T	c.(3931-3933)CTC>CTT	p.L1311L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1311	LDL-receptor class B 8.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	AGAGCGCCCTCTACTGGACCG	0.622											OREG0021937	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	61					0	0	0.000958	0	0
MARS	4141	broad.mit.edu	37	12	57894287	57894287	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:57894287C>T	uc001sog.2	+	10	1298	c.1275C>T	c.(1273-1275)ATC>ATT	p.I425I	MARS_uc001sof.1_RNA|MARS_uc010srp.1_Silent_p.I298I|MARS_uc010srq.1_Silent_p.I191I	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	425					methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	GCAAGCTCATCAATGCTGTCG	0.562													8	33					0	0	0.004482	0	0
SLC16A7	9194	broad.mit.edu	37	12	60168834	60168834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:60168834G>A	uc001sqs.2	+	5	1057	c.758G>A	c.(757-759)GGA>GAA	p.G253E	SLC16A7_uc001sqt.2_Missense_Mutation_p.G253E|SLC16A7_uc001squ.2_Missense_Mutation_p.G253E|SLC16A7_uc009zqi.2_Missense_Mutation_p.G154E|SLC16A7_uc010ssi.1_Missense_Mutation_p.G154E	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	253	Helical; (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	TATCTGTCTGGAAATGTCATT	0.348													10	21					0	0	0.000673	0	0
MON2	23041	broad.mit.edu	37	12	62965244	62965244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:62965244C>T	uc001sre.2	+	30	4787	c.4396C>T	c.(4396-4398)CTC>TTC	p.L1466F	MON2_uc009zqj.2_Missense_Mutation_p.L1466F|MON2_uc010ssl.1_Missense_Mutation_p.L1394F|MON2_uc010ssm.1_Missense_Mutation_p.L1437F|MON2_uc010ssn.1_Missense_Mutation_p.L1460F|MON2_uc001srf.2_Missense_Mutation_p.L1229F|MON2_uc001srg.2_Missense_Mutation_p.L335F	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	1467					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		AGTATCCTCTCTCCTCAGAGT	0.423													24	113					0	0	0.003330	0	0
TMBIM4	51643	broad.mit.edu	37	12	66531946	66531946	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:66531946A>G	uc001stc.2	-	7	587	c.511T>C	c.(511-513)TTT>CTT	p.F171L	LLPH_uc010ssx.1_Intron|TMBIM4_uc001std.2_Missense_Mutation_p.F140L|TMBIM4_uc009zqr.2_Missense_Mutation_p.F218L|TMBIM4_uc001ste.2_RNA|TMBIM4_uc001stf.2_Missense_Mutation_p.V159A|TMBIM4_uc009zqs.2_Silent_p.G155G	NM_016056	NP_057140	Q9HC24	TMBI4_HUMAN	transmembrane BAX inhibitor motif containing 4	171	Helical; (Potential).					integral to membrane	protein binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(28;0.0745)		TAAAAAAAAAACTATAGGGAA	0.338													4	20					0	0	0.000248	0	0
YEATS4	8089	broad.mit.edu	37	12	69764559	69764559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:69764559C>T	uc001sux.2	+	5	628	c.407C>T	c.(406-408)TCA>TTA	p.S136L		NM_006530	NP_006521	O95619	YETS4_HUMAN	glioma-amplified sequence-41	136					histone H2A acetylation|histone H4 acetylation|mitosis|positive regulation of transcription, DNA-dependent|regulation of growth	NuA4 histone acetyltransferase complex|nuclear matrix	DNA binding|protein C-terminus binding|sequence-specific DNA binding transcription factor activity|structural constituent of cytoskeleton				0	all_epithelial(5;9.25e-35)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;6.89e-18)|BRCA - Breast invasive adenocarcinoma(5;3.14e-09)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			ACAGTGGTTTCAGAGTTCTAT	0.328													16	24					0	0	0.000958	0	0
FRS2	10818	broad.mit.edu	37	12	69965066	69965066	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:69965066C>T	uc001suy.2	+	8	774	c.264C>T	c.(262-264)GCC>GCT	p.A88A	FRS2_uc001suz.2_Silent_p.A88A|FRS2_uc009zrj.2_Silent_p.A88A|FRS2_uc009zrk.2_Silent_p.A88A	NM_006654	NP_006645	Q8WU20	FRS2_HUMAN	fibroblast growth factor receptor substrate 2	88	IRS-type PTB.				activation of MAPKK activity|activation of phospholipase C activity|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|transmembrane receptor protein tyrosine phosphatase signaling pathway	endomembrane system|endosome|integral to plasma membrane|membrane fraction	fibroblast growth factor receptor binding|insulin receptor binding|phosphatase activator activity|transmembrane receptor protein tyrosine kinase adaptor activity			prostate(1)|kidney(1)	2	Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.94e-18)|Lung(24;9.68e-05)|OV - Ovarian serous cystadenocarcinoma(12;0.000984)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			GAATCTTTGCCTTTAAGTGTG	0.308											OREG0021986	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	36					0	0	0.001855	0	0
BEST3	144453	broad.mit.edu	37	12	70070981	70070981	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:70070981C>T	uc001svg.2	-	6	920	c.693G>A	c.(691-693)GGG>GGA	p.G231G	BEST3_uc001svd.1_Silent_p.G231G|BEST3_uc001sve.1_RNA|BEST3_uc001svf.2_Silent_p.G69G|BEST3_uc010stm.1_Silent_p.G125G|BEST3_uc001svh.2_Silent_p.G69G	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	231						chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CCAGCGGAATCCCAACCCAGT	0.463													9	12					0	0	0.000673	0	0
TSPAN8	7103	broad.mit.edu	37	12	71533496	71533496	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:71533496G>A	uc009zrt.1	-	3	418	c.256C>T	c.(256-258)CTG>TTG	p.L86L	TSPAN8_uc001swk.1_Silent_p.L86L|TSPAN8_uc001swj.1_Silent_p.L86L	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	86	Helical; (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			CTCACCAACAGAAGCATGCAG	0.468													9	253					0	0	0.004482	0	0
LGR5	8549	broad.mit.edu	37	12	71898457	71898457	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:71898457G>A	uc001swl.2	+	2	324	c.276G>A	c.(274-276)CTG>CTA	p.L92L	LGR5_uc001swm.2_Silent_p.L92L|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	92	LRR 2.|Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TCCGCTTCCTGGAGGAGTTGT	0.498													50	86					0	0	0.003610	0	0
E2F7	144455	broad.mit.edu	37	12	77449688	77449688	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:77449688C>A	uc001sym.3	-	3	552	c.316G>T	c.(316-318)GGA>TGA	p.G106*	E2F7_uc001syn.2_Nonsense_Mutation_p.G106*	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	106					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						CGGAATAGTCCCTTTTTCTTC	0.448													27	34					7.01153e-11	1.37538e-10	0.001271	1	0
MYF6	4618	broad.mit.edu	37	12	81101868	81101868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:81101868C>T	uc001szf.1	+	1	423	c.370C>T	c.(370-372)CCC>TCC	p.P124S		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	124	Helix-loop-helix motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						TGTGGCCAACCCCAACCAGAG	0.607													17	31					0	0	0.001216	0	0
ACSS3	79611	broad.mit.edu	37	12	81627128	81627128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:81627128G>A	uc001szl.1	+	13	1688	c.1597G>A	c.(1597-1599)GGA>AGA	p.G533R	ACSS3_uc001szm.1_Missense_Mutation_p.G532R|ACSS3_uc001szn.1_Missense_Mutation_p.G215R	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	533						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TTGTTTTCAGGGATATTATGA	0.313													3	7					0	0	0.004672	0	0
C12orf50	160419	broad.mit.edu	37	12	88383123	88383123	+	Silent	SNP	C	T	T	rs146612959		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:88383123C>T	uc001tam.1	-	8	786	c.618G>A	c.(616-618)AGG>AGA	p.R206R	C12orf50_uc001tan.2_Silent_p.R260R	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	206										skin(2)|ovary(1)	3						GAAATATGACCCTCTGTGGAA	0.299													10	18					0	0	0.000443	0	0
C12orf12	196477	broad.mit.edu	37	12	91347709	91347709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:91347709G>A	uc001tbj.2	-	1	1245	c.811C>T	c.(811-813)CTT>TTT	p.L271F		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	271	Glu-rich.									central_nervous_system(1)|pancreas(1)	2						AGCGGGGCAAGAGACTGGTTT	0.378													81	282					0	0	0.003610	0	0
FGD6	55785	broad.mit.edu	37	12	95488460	95488460	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:95488460C>A	uc001tdp.3	-	15	3732	c.3508G>T	c.(3508-3510)GAA>TAA	p.E1170*	FGD6_uc009zsx.2_Nonsense_Mutation_p.E303*|FGD6_uc001tdq.1_Nonsense_Mutation_p.E206*	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1170	PH 1.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						TCATCCCTTTCTGTGGCAGAA	0.388													56	73					1.48341e-19	2.92704e-19	0.003610	1	0
C12orf63	374467	broad.mit.edu	37	12	97052043	97052043	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:97052043T>C	uc001tet.1	+	5	732	c.654T>C	c.(652-654)CTT>CTC	p.L218L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	218										skin(6)|ovary(1)	7						AGCGCCAGCTTCTGCTGAGAA	0.403													31	39					0	0	0.002445	0	0
C12orf63	374467	broad.mit.edu	37	12	97078890	97078890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:97078890C>T	uc001tet.1	+	9	1241	c.1163C>T	c.(1162-1164)CCC>CTC	p.P388L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	388										skin(6)|ovary(1)	7						GAATTTGGCCCCTCACTCACC	0.463													4	37					0	0	0.000248	0	0
ANO4	121601	broad.mit.edu	37	12	101430917	101430917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:101430917C>T	uc010svm.1	+	10	1458	c.886C>T	c.(886-888)CCC>TCC	p.P296S	ANO4_uc001thw.2_Missense_Mutation_p.P261S|ANO4_uc001thx.2_Missense_Mutation_p.P296S	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	296	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AGCTGCGTTTCCCCTGCATGA	0.348										HNSCC(74;0.22)			34	97					0	0	0.001485	0	0
SPIC	121599	broad.mit.edu	37	12	101876613	101876613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:101876613C>T	uc001tid.2	+	5	413	c.254C>T	c.(253-255)TCT>TTT	p.S85F	SPIC_uc009zua.2_5'UTR|SPIC_uc010svp.1_Missense_Mutation_p.S84F	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	85						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						ATTCATCAATCTCTGCAGAAC	0.303													79	114					0	0	0.003610	0	0
SPIC	121599	broad.mit.edu	37	12	101880291	101880291	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:101880291C>T	uc001tid.2	+	6	648	c.489C>T	c.(487-489)ACC>ACT	p.T163T	SPIC_uc009zua.2_Silent_p.T38T|SPIC_uc010svp.1_Silent_p.T162T	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	163	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						ACAGGAAGACCATGACTTACC	0.433													7	48					0	0	0.003080	0	0
ASCL1	429	broad.mit.edu	37	12	103352346	103352346	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:103352346T>C	uc001tjr.3	+	1	895	c.324T>C	c.(322-324)TTT>TTC	p.F108F		NM_004316	NP_004307	P50553	ASCL1_HUMAN	achaete-scute complex homolog 1	108					cerebral cortex GABAergic interneuron differentiation|negative regulation of apoptosis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|noradrenergic neuron fate commitment|Notch signaling pathway|positive regulation of neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|response to retinoic acid|sympathetic nervous system development	nucleus	bHLH transcription factor binding|E-box binding|sequence-specific DNA binding transcription factor activity|transcription factor binding transcription factor activity				0						TCAGCGGCTTTGGCTACAGCC	0.667													3	11					0	0	0.004672	0	0
C12orf42	374470	broad.mit.edu	37	12	103699882	103699882	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:103699882C>T	uc001tjt.2	-	5	589	c.501G>A	c.(499-501)TTG>TTA	p.L167L	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Silent_p.L167L|C12orf42_uc001tju.2_Silent_p.L72L	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	167										ovary(1)|central_nervous_system(1)	2						CCAGTTGTTCCAAAAATGAAC	0.493													11	28					0	0	0.000673	0	0
C12orf42	374470	broad.mit.edu	37	12	103795435	103795435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:103795435G>A	uc001tjt.2	-	3	185	c.97C>T	c.(97-99)CCC>TCC	p.P33S	C12orf42_uc001tjs.2_RNA|C12orf42_uc009zuf.1_Missense_Mutation_p.P33S|C12orf42_uc001tju.2_5'UTR	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	33										ovary(1)|central_nervous_system(1)	2						CTCACAATGGGAATATAGCAA	0.433													9	34					0	0	0.000673	0	0
C12orf42	374470	broad.mit.edu	37	12	103872171	103872171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:103872171C>T	uc001tjt.2	-	2	122	c.34G>A	c.(34-36)GAA>AAA	p.E12K	C12orf42_uc001tjs.2_RNA|C12orf42_uc009zuf.1_Missense_Mutation_p.E12K|C12orf42_uc001tju.2_5'UTR	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	12										ovary(1)|central_nervous_system(1)	2						AAGAATTCTTCTTCCCTTTGT	0.338													8	8					0	0	0.000443	0	0
NT5DC3	51559	broad.mit.edu	37	12	104179185	104179185	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:104179185G>A	uc010swe.1	-	12	1298	c.1257C>T	c.(1255-1257)ATC>ATT	p.I419I		NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	419							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						CCGTGTTCATGATTTTGAGCT	0.438													37	50					0	0	0.001287	0	0
HSP90B1	7184	broad.mit.edu	37	12	104326062	104326062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:104326062G>A	uc001tkb.1	+	3	265	c.160G>A	c.(160-162)GAA>AAA	p.E54K	HSP90B1_uc010swg.1_Intron|HSP90B1_uc009zui.1_Missense_Mutation_p.E54K|LOC253724_uc010swf.1_5'Flank|LOC253724_uc009zuh.2_5'Flank	NM_003299	NP_003290	P14625	ENPL_HUMAN	heat shock protein 90kDa beta, member 1	54					actin rod assembly|anti-apoptosis|cellular response to ATP|ER-associated protein catabolic process|protein folding|protein transport|regulation of phosphoprotein phosphatase activity|response to hypoxia|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|melanosome|microsome|midbody|perinuclear region of cytoplasm	ATP binding|calcium ion binding|low-density lipoprotein particle receptor binding|protein phosphatase binding|RNA binding|unfolded protein binding|virion binding			ovary(2)|skin(1)	3					Rifabutin(DB00615)	TAGAGAGGAAGAAGCTATTCA	0.383													10	37					0	0	0.000443	0	0
SLC41A2	84102	broad.mit.edu	37	12	105322143	105322143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:105322143C>T	uc001tla.2	-	1	330	c.163G>A	c.(163-165)GAA>AAA	p.E55K		NM_032148	NP_115524	Q96JW4	S41A2_HUMAN	solute carrier family 41, member 2	55	Extracellular.					integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TGCCTGTCTTCTTGGTTTTTC	0.363													3	10					0	0	0.004672	0	0
SELPLG	6404	broad.mit.edu	37	12	109017754	109017754	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:109017754C>T	uc001tni.2	-	2	490	c.330G>A	c.(328-330)GGG>GGA	p.G110G	SELPLG_uc001tnh.2_Silent_p.G110G|SELPLG_uc010sxe.1_Silent_p.G126G	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	110	Extracellular (Potential).				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						TGGACAGGTTCCCCATGTTGG	0.607													10	56					0	0	0.000673	0	0
USP30	84749	broad.mit.edu	37	12	109523491	109523491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:109523491C>T	uc010sxi.1	+	13	1413	c.1309C>T	c.(1309-1311)CGG>TGG	p.R437W	USP30_uc001tnu.3_Missense_Mutation_p.R406W|USP30_uc001tnw.3_Missense_Mutation_p.R154W	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	437	Cytoplasmic (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						ATACCTCTTCCGGCTGATGGC	0.458													45	53					0	0	0.003610	0	0
ACACB	32	broad.mit.edu	37	12	109692060	109692060	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:109692060C>T	uc001tob.2	+	44	6206	c.6087C>T	c.(6085-6087)CCC>CCT	p.P2029P	ACACB_uc001toc.2_Silent_p.P2029P|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Silent_p.P695P	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	2029	Carboxyltransferase.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CCACTGACCCCATTGACAGAG	0.473													42	90					0	0	0.002222	0	0
TRPV4	59341	broad.mit.edu	37	12	110231822	110231822	+	Silent	SNP	C	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:110231822C>G	uc001tpj.1	-	8	1592	c.1497G>C	c.(1495-1497)CCG>CCC	p.P499P	TRPV4_uc001tpg.1_Silent_p.P465P|TRPV4_uc001tph.1_Silent_p.P452P|TRPV4_uc001tpi.1_Silent_p.P392P|TRPV4_uc001tpk.1_Silent_p.P499P|TRPV4_uc001tpl.1_Silent_p.P439P	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	499	Extracellular (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding	p.P499S(1)		ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GGTAAGGGTACGGCGGCTGGG	0.627													4	17					0	0	0.001168	0	0
GIT2	9815	broad.mit.edu	37	12	110390905	110390905	+	Missense_Mutation	SNP	G	A	A	rs143551429	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:110390905G>A	uc001tps.2	-	13	1399	c.1234C>T	c.(1234-1236)CGG>TGG	p.R412W	TCHP_uc001tpo.1_Intron|GIT2_uc001tpr.2_5'UTR|GIT2_uc001tpq.2_Missense_Mutation_p.R412W|GIT2_uc001tpv.2_Missense_Mutation_p.R414W|GIT2_uc001tpu.2_Missense_Mutation_p.R412W|GIT2_uc001tpt.2_Missense_Mutation_p.R412W|GIT2_uc010sxu.1_Missense_Mutation_p.R350W|GIT2_uc001tpw.2_Missense_Mutation_p.R412W|GIT2_uc010sxv.1_Missense_Mutation_p.R412W	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	412					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						ACCTTCTGCCGGTTTGTTTTG	0.547													9	51					0	0	0.000443	0	0
GIT2	9815	broad.mit.edu	37	12	110390907	110390907	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:110390907T>G	uc001tps.2	-	13	1397	c.1232A>C	c.(1231-1233)AAC>ACC	p.N411T	TCHP_uc001tpo.1_Intron|GIT2_uc001tpr.2_5'UTR|GIT2_uc001tpq.2_Missense_Mutation_p.N411T|GIT2_uc001tpv.2_Missense_Mutation_p.N413T|GIT2_uc001tpu.2_Missense_Mutation_p.N411T|GIT2_uc001tpt.2_Missense_Mutation_p.N411T|GIT2_uc010sxu.1_Missense_Mutation_p.N349T|GIT2_uc001tpw.2_Missense_Mutation_p.N411T|GIT2_uc010sxv.1_Missense_Mutation_p.N411T	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	411					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						CTTCTGCCGGTTTGTTTTGCT	0.547													9	55					0	0	0.000443	0	0
ANAPC7	51434	broad.mit.edu	37	12	110824147	110824147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:110824147G>A	uc001tqo.2	-	6	905	c.904C>T	c.(904-906)CCT>TCT	p.P302S	ANAPC7_uc001tqp.3_Missense_Mutation_p.P302S	NM_016238	NP_057322	Q9UJX3	APC7_HUMAN	anaphase-promoting complex subunit 7 isoform a	302	TPR 3.			P -> L (in Ref. 1; AAF05754).	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding				0						ATCAGATAAGGATCCAACATC	0.438													142	157					0	0	0.003610	0	0
ATXN2	6311	broad.mit.edu	37	12	111895157	111895157	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:111895157G>C	uc001tsj.2	-	22	3539	c.3377C>G	c.(3376-3378)ACG>AGG	p.T1126R	ATXN2_uc001tsh.2_Missense_Mutation_p.T861R|ATXN2_uc001tsi.2_Missense_Mutation_p.T819R|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsg.2_Missense_Mutation_p.T314R|ATXN2_uc001tsl.1_Missense_Mutation_p.T127R	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	1126					cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						AAGGGAGCCCGTGGAAACTAA	0.512													12	43					0	0	0.002450	0	0
RPH3A	22895	broad.mit.edu	37	12	113314635	113314635	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:113314635G>A	uc010syl.1	+	13	1497	c.1135G>A	c.(1135-1137)GAA>AAA	p.E379K	RPH3A_uc001ttz.2_Missense_Mutation_p.E379K|RPH3A_uc001tty.2_Missense_Mutation_p.E375K|RPH3A_uc009zwe.1_Missense_Mutation_p.E375K|RPH3A_uc010sym.1_Missense_Mutation_p.E330K|RPH3A_uc001tua.2_Missense_Mutation_p.E139K	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	379					intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		AGAGGAGGAGGAAGAGGAAGC	0.587													18	27					0	0	0.002780	0	0
TBX5	6910	broad.mit.edu	37	12	114832685	114832685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:114832685G>A	uc001tvo.2	-	6	1019	c.524C>T	c.(523-525)TCC>TTC	p.S175F	TBX5_uc001tvp.2_Missense_Mutation_p.S175F|TBX5_uc001tvq.2_Missense_Mutation_p.S125F|TBX5_uc010syv.1_Missense_Mutation_p.S175F	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	175	T-box.				cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		TTTGTGCATGGAATTTAGAAT	0.373													113	145					0	0	0.003610	0	0
NOS1	4842	broad.mit.edu	37	12	117672437	117672437	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:117672437C>T	uc001twm.1	-	21	3854	c.3168G>A	c.(3166-3168)CTG>CTA	p.L1056L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1056	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCGCGTCCTCCAGCCGCTCGA	0.622													8	41					0	0	0.004482	0	0
NOS1	4842	broad.mit.edu	37	12	117725962	117725962	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:117725962C>T	uc001twm.1	-	5	1730	c.1044G>A	c.(1042-1044)AGG>AGA	p.R348R		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	348					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTTCAGGCCTCCTTGCATGCT	0.448													17	41					0	0	0.000958	0	0
CCDC60	160777	broad.mit.edu	37	12	119909830	119909830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:119909830G>A	uc001txe.2	+	3	667	c.202G>A	c.(202-204)GGA>AGA	p.G68R	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	68										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GATAGGCCGTGGATATTTTGC	0.428													45	71					0	0	0.003610	0	0
RNF10	9921	broad.mit.edu	37	12	121000839	121000839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:121000839C>T	uc001typ.3	+	8	1703	c.1220C>T	c.(1219-1221)CCC>CTC	p.P407L	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.P313L	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	407					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGATGGCTCCCTTGGCGAAG	0.537													26	36					0	0	0.003954	0	0
SPPL3	121665	broad.mit.edu	37	12	121205323	121205323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:121205323G>A	uc001tzd.2	-	9	1328	c.847C>T	c.(847-849)CTT>TTT	p.L283F	SPPL3_uc009zwz.2_Missense_Mutation_p.L276F|SPPL3_uc001tzc.2_Missense_Mutation_p.L113F	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	284	Helical; (Potential).					integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCATAGCGAAGGACAAAGCAT	0.537													17	28					0	0	0.006122	0	0
HNF1A	6927	broad.mit.edu	37	12	121437168	121437168	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:121437168G>A	uc001tzg.2	+	8	1622	c.1599G>A	c.(1597-1599)CTG>CTA	p.L533L	HNF1A_uc010szn.1_Silent_p.L533L	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	533					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TGAGCGCCCTGGCCAGCCTCA	0.677									Hepatic_Adenoma_Familial_Clustering_of				69	101					0	0	0.003610	0	0
HPD	3242	broad.mit.edu	37	12	122284839	122284839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:122284839C>T	uc001ubj.2	-	11	800	c.760G>A	c.(760-762)GAA>AAA	p.E254K	HPD_uc001ubk.2_Missense_Mutation_p.E215K	NM_002150	NP_002141	P32754	HPPD_HUMAN	4-hydroxyphenylpyruvate dioxygenase	254					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000105)|Epithelial(86;0.000352)|BRCA - Breast invasive adenocarcinoma(302;0.225)	Nitisinone(DB00348)	TCCACATATTCCTGGGGGAGG	0.587													15	18					0	0	0.002450	0	0
PSMD9	5715	broad.mit.edu	37	12	122353785	122353785	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:122353785C>T	uc001ubl.2	+	5	696	c.579C>T	c.(577-579)ATC>ATT	p.I193I	WDR66_uc009zxk.2_5'Flank|PSMD9_uc009zxj.2_RNA|PSMD9_uc001ubm.2_Silent_p.I192I	NM_002813	NP_002804	O00233	PSMD9_HUMAN	proteasome 26S non-ATPase subunit 9	193	PDZ.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of insulin secretion|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of insulin secretion|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|proteasome regulatory particle assembly|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	nucleus|proteasome regulatory particle	bHLH transcription factor binding|transcription coactivator activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000117)|Epithelial(86;0.000415)|BRCA - Breast invasive adenocarcinoma(302;0.231)		TGACAGTGATCCGCAGGGGGG	0.358													10	25					0	0	0.001368	0	0
WDR66	144406	broad.mit.edu	37	12	122437759	122437759	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:122437759C>T	uc009zxk.2	+	20	3286	c.3144C>T	c.(3142-3144)ATC>ATT	p.I1048I		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	1048							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		TGAGTGGCATCCACAAGAGCT	0.448													25	37					0	0	0.003954	0	0
MLXIP	22877	broad.mit.edu	37	12	122611827	122611827	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:122611827G>A	uc001ubq.2	+	2	438	c.438G>A	c.(436-438)TGG>TGA	p.W146*	MLXIP_uc001ubr.2_5'Flank	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	146	Required for cytoplasmic localization.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CTCCAAAGTGGAAGAATTTCA	0.512											OREG0022217	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	12					0	0	0.000673	0	0
GPR109B	8843	broad.mit.edu	37	12	123201117	123201117	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:123201117G>A	uc001ucy.3	-	1	323	c.168C>T	c.(166-168)CTC>CTT	p.L56L	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	56	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	TCCAGGACTTGAGGTGGAAAC	0.522													5	35					0	0	0.001168	0	0
ZNF664	144348	broad.mit.edu	37	12	124497191	124497191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:124497191G>A	uc001ufz.2	+	6	2330	c.500G>A	c.(499-501)GGA>GAA	p.G167E	ZNF664_uc001uga.2_Missense_Mutation_p.G167E|ZNF664_uc001ugb.2_Missense_Mutation_p.G167E	NM_152437	NP_689650	Q8N3J9	ZN664_HUMAN	zinc finger protein 664	167					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.000239)|OV - Ovarian serous cystadenocarcinoma(86;0.000247)|all cancers(50;0.00155)|BRCA - Breast invasive adenocarcinoma(302;0.249)		GTCCACACAGGAGAGAAACCC	0.512													25	115					0	0	0.004656	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558594	129558594	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:129558594C>T	uc009zyl.1	-	9	3454	c.3126G>A	c.(3124-3126)AGG>AGA	p.R1042R	TMEM132D_uc001uia.2_Silent_p.R580R	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	1042	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TTACCCTTTTCCTTTTTGAGG	0.483													15	79					0	0	0.006122	0	0
PIWIL1	9271	broad.mit.edu	37	12	130827153	130827153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:130827153G>A	uc001uik.2	+	2	107	c.17G>A	c.(16-18)CGA>CAA	p.R6Q	PIWIL1_uc001uij.1_Missense_Mutation_p.R6Q	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	6					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		GGGAGAGCCCGAGCCAGAGCC	0.488													22	15					0	0	0.003330	0	0
RIMBP2	23504	broad.mit.edu	37	12	130919319	130919319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr12:130919319G>A	uc001uil.2	-	11	2326	c.2162C>T	c.(2161-2163)TCG>TTG	p.S721L	RIMBP2_uc001uim.2_Missense_Mutation_p.S629L|RIMBP2_uc001uin.1_Missense_Mutation_p.S380L	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	721						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GTCGTCCACCGAGGCGCCCCT	0.657													20	77					0	0	0.001523	0	0
TPTE2	93492	broad.mit.edu	37	13	20006665	20006665	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:20006665G>A	uc001umd.2	-	17	1381	c.1170C>T	c.(1168-1170)CTC>CTT	p.L390L	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Silent_p.L279L|TPTE2_uc001ume.2_Silent_p.L313L|TPTE2_uc009zzm.2_Silent_p.L61L|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Silent_p.L61L	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	390						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		GTCTTGGAGGGAGATTCCAGT	0.358													6	42					0	0	0.001168	0	0
PARP4	143	broad.mit.edu	37	13	25026555	25026555	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:25026555G>A	uc001upl.2	-	24	3109	c.3003C>T	c.(3001-3003)GCC>GCT	p.A1001A	PARP4_uc010tdc.1_Silent_p.A1001A	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1001	VWFA.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		CGATACCGCAGGCGAATAACC	0.587													53	78					0	0	0.003610	0	0
RNF17	56163	broad.mit.edu	37	13	25353861	25353861	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:25353861C>T	uc001upr.2	+	5	527	c.486C>T	c.(484-486)TTC>TTT	p.F162F	RNF17_uc010tdd.1_Silent_p.F21F|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.F162F|RNF17_uc001ups.2_Silent_p.F101F|RNF17_uc001upq.1_Silent_p.F162F	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	162					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ACCATAGTTTCGAACAGTTAA	0.348													18	30					0	0	0.006122	0	0
RNF17	56163	broad.mit.edu	37	13	25373580	25373580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:25373580G>A	uc001upr.2	+	12	1488	c.1447G>A	c.(1447-1449)GGA>AGA	p.G483R	RNF17_uc010tdd.1_Missense_Mutation_p.G342R|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.G483R|RNF17_uc001ups.2_Missense_Mutation_p.G422R	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	483					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GTGGTGTCGAGGAACTATCAC	0.323													16	107					0	0	0.004990	0	0
FLT3	2322	broad.mit.edu	37	13	28602361	28602361	+	Silent	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:28602361T>A	uc001urw.2	-	16	2089	c.2007A>T	c.(2005-2007)GGA>GGT	p.G669G	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.G669G	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	669	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCTCGTGGCTTCCCAGCTGGG	0.448			Mis|O		AML|ALL								16	31					0	0	0.000958	0	0
FLT1	2321	broad.mit.edu	37	13	28971101	28971101	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:28971101G>A	uc001usb.3	-	12	1941	c.1656C>T	c.(1654-1656)ATC>ATT	p.I552I	FLT1_uc010aar.1_Silent_p.I552I|FLT1_uc001usc.3_Silent_p.I552I|FLT1_uc010aas.1_RNA|FLT1_uc010aat.1_Silent_p.I35I	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	552	Ig-like C2-type 5.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GCTTACCTGTGATATAAAAGC	0.398													5	21					0	0	0.000602	0	0
MTUS2	23281	broad.mit.edu	37	13	29600048	29600048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:29600048G>A	uc001usl.3	+	1	1301	c.1243G>A	c.(1243-1245)GGG>AGG	p.G415R		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	405						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TTCCTTAGGAGGGGCTGATAA	0.542													15	4					0	0	0.003163	0	0
MTUS2	23281	broad.mit.edu	37	13	29600623	29600623	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:29600623G>A	uc001usl.3	+	1	1876	c.1818G>A	c.(1816-1818)GGG>GGA	p.G606G		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	596						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GCCCCAGTGGGATCCCCAAGC	0.532													9	23					0	0	0.000443	0	0
KATNAL1	84056	broad.mit.edu	37	13	30805518	30805518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:30805518G>A	uc001uss.2	-	7	919	c.818C>T	c.(817-819)TCG>TTG	p.S273L	KATNAL1_uc001ust.2_Missense_Mutation_p.S273L	NM_001014380	NP_001014402	Q9BW62	KATL1_HUMAN	katanin p60 subunit A-like 1	273						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity				0		Lung SC(185;0.0257)		all cancers(112;0.114)|OV - Ovarian serous cystadenocarcinoma(117;0.213)		TGTAGAAGACGAAACGTTGAA	0.408													5	35					0	0	0.000602	0	0
RXFP2	122042	broad.mit.edu	37	13	32366846	32366846	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:32366846C>T	uc001utt.2	+	16	1478	c.1407C>T	c.(1405-1407)TTC>TTT	p.F469F	RXFP2_uc010aba.2_Silent_p.F428F	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	469	Helical; Name=2; (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TTTACTTGTTCTTTGTTGGCA	0.453													13	82					0	0	0.004007	0	0
PDS5B	23047	broad.mit.edu	37	13	33332294	33332294	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:33332294G>A	uc010abf.2	+	27	3284	c.3126G>A	c.(3124-3126)AAG>AAA	p.K1042K	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	1042					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		TTATCAGAAAGATGGTAGAAA	0.249													5	51					0	0	0.001168	0	0
SOHLH2	54937	broad.mit.edu	37	13	36765966	36765966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:36765966G>A	uc001uvj.2	-	5	585	c.496C>T	c.(496-498)CAC>TAC	p.H166Y	SOHLH2_uc010tei.1_Missense_Mutation_p.H243Y	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	166					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		TATCCCAGGTGTTCGCTGTAG	0.358													37	41					0	0	0.002522	0	0
FREM2	341640	broad.mit.edu	37	13	39264404	39264404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:39264404G>A	uc001uwv.2	+	1	3232	c.2923G>A	c.(2923-2925)GAA>AAA	p.E975K		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	975	CSPG 6.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GACCAATGAGGAAACTGATGA	0.443													8	67					0	0	0.004482	0	0
NAA16	79612	broad.mit.edu	37	13	41933026	41933026	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:41933026C>T	uc001uyf.2	+	12	1662	c.1338C>T	c.(1336-1338)TCC>TCT	p.S446S	NAA16_uc010tfg.1_RNA	NM_024561	NP_078837	Q6N069	NAA16_HUMAN	NMDA receptor regulated 1-like protein isoform	446					N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent	cytoplasm|transcription factor complex	binding			central_nervous_system(1)	1						TCATCAATTCCAAATGTGCAA	0.373													51	52					0	0	0.003610	0	0
TNFSF11	8600	broad.mit.edu	37	13	43180898	43180898	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:43180898G>A	uc001uyu.2	+	5	947	c.798G>A	c.(796-798)GGG>GGA	p.G266G	TNFSF11_uc001uyt.2_Silent_p.G193G	NM_003701	NP_003692	O14788	TNF11_HUMAN	tumor necrosis factor ligand superfamily, member	266	Extracellular (Potential).				immune response|monocyte chemotaxis|osteoclast differentiation|positive regulation of bone resorption|positive regulation of corticotropin-releasing hormone secretion|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of homotypic cell-cell adhesion|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell activation	cytoplasm|extracellular space|integral to plasma membrane	cytokine activity|receptor activity|tumor necrosis factor receptor binding				0		Lung NSC(96;1.11e-05)|Breast(139;0.00868)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000249)|GBM - Glioblastoma multiforme(144;0.00119)|BRCA - Breast invasive adenocarcinoma(63;0.073)		ATTGGTCAGGGAATTCTGAAT	0.423													8	72					0	0	0.003080	0	0
TSC22D1	8848	broad.mit.edu	37	13	45148310	45148310	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:45148310G>T	uc001uzn.3	-	1	2392	c.1901C>A	c.(1900-1902)CCA>CAA	p.P634Q	TSC22D1_uc001uzo.1_Intron	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	634	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		AGAAACCATTGGTTGCTGTTG	0.507													14	118					2.32078e-09	4.54217e-09	0.003163	1	0
C13orf18	80183	broad.mit.edu	37	13	46942885	46942885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:46942885G>A	uc010acl.2	-	4	1206	c.601C>T	c.(601-603)CCT>TCT	p.P201S	C13orf18_uc001vbf.3_Missense_Mutation_p.P134S|C13orf18_uc001vbg.3_5'UTR|C13orf18_uc010tfz.1_Missense_Mutation_p.P44S|C13orf18_uc010acm.2_Missense_Mutation_p.P66S|C13orf18_uc010acn.2_5'UTR|C13orf18_uc001vbe.3_Missense_Mutation_p.P201S|C13orf18_uc001vbh.3_Missense_Mutation_p.P201S|C13orf18_uc001vbi.3_Missense_Mutation_p.P44S|C13orf18_uc010aco.1_Missense_Mutation_p.P201S|C13orf18_uc010tga.1_Missense_Mutation_p.P134S	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	201											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		ACATCAACAGGCAGCACAAAT	0.353													24	138					0	0	0.003954	0	0
RCBTB2	1102	broad.mit.edu	37	13	49085947	49085947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:49085947G>A	uc001vch.2	-	9	1113	c.742C>T	c.(742-744)CCT>TCT	p.P248S	RCBTB2_uc010tgg.1_Missense_Mutation_p.P253S|RCBTB2_uc001vci.2_Missense_Mutation_p.P224S|RCBTB2_uc010tgh.1_Silent_p.P21P|RCBTB2_uc001vcj.2_Missense_Mutation_p.P252S|RCBTB2_uc010acv.1_RNA|RCBTB2_uc010tgi.1_Missense_Mutation_p.P224S	NM_001268	NP_001259	O95199	RCBT2_HUMAN	regulator of chromosome condensation and BTB	248	RCC1 4.						Ran guanyl-nucleotide exchange factor activity			ovary(2)|lung(2)|skin(1)	5		all_cancers(8;4.86e-71)|all_epithelial(8;2.11e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;2.3e-10)|Lung NSC(96;1.07e-07)|Breast(56;1.53e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.00826)|Myeloproliferative disorder(33;0.0179)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(99;1.8e-09)|LUSC - Lung squamous cell carcinoma(3;0.116)		ACTCTGCAAGGGGTTGGCTGG	0.512													17	24					0	0	0.006122	0	0
LOC220429	220429	broad.mit.edu	37	13	50465242	50465242	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:50465242G>A	uc001vdk.2	+	1	698	c.516G>A	c.(514-516)AGG>AGA	p.R172R		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						TTTCCAAAAGGATACAGTCTC	0.358													40	43					0	0	0.001706	0	0
PCDH9	5101	broad.mit.edu	37	13	66879139	66879139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:66879139C>T	uc001vik.2	-	5	4054	c.3362G>A	c.(3361-3363)GGA>GAA	p.G1121E	PCDH9_uc010aei.2_RNA|PCDH9_uc001vil.2_Missense_Mutation_p.G1087E|PCDH9_uc010thl.1_Missense_Mutation_p.G1079E	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	1121	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		TTCAGCTAATCCTCGGGGACC	0.428													6	0					0	0	0.001168	0	0
PCDH9	5101	broad.mit.edu	37	13	67800118	67800118	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:67800118T>C	uc001vik.2	-	2	3147	c.2455A>G	c.(2455-2457)ATC>GTC	p.I819V	PCDH9_uc001vil.2_Missense_Mutation_p.I819V|PCDH9_uc010thl.1_Missense_Mutation_p.I819V|PCDH9_uc001vin.3_Missense_Mutation_p.I819V	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	819	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		CCGGCGATGATGGCAATCATG	0.512													43	53					0	0	0.003610	0	0
DACH1	1602	broad.mit.edu	37	13	72147000	72147000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:72147000G>A	uc010thn.1	-	5	1694	c.1271C>T	c.(1270-1272)CCA>CTA	p.P424L	DACH1_uc010tho.1_Intron|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	476					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AACTCTGGATGGGGGACTCTG	0.423													18	31					0	0	0.001882	0	0
RBM26	64062	broad.mit.edu	37	13	79908520	79908520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:79908520G>A	uc001vkz.2	-	20	2799	c.2785C>T	c.(2785-2787)CAT>TAT	p.H929Y	RBM26_uc001vky.2_Missense_Mutation_p.H900Y|RBM26_uc001vla.2_Missense_Mutation_p.H903Y|RBM26_uc010tia.1_Missense_Mutation_p.H284Y|RBM26_uc001vkx.2_Missense_Mutation_p.H639Y	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	927	RRM 2.				mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		ATTACTGCATGAAGTGAGGAA	0.214													9	49					0	0	0.000978	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485076	97485076	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:97485076A>G	uc001vmw.2	+	2	1064	c.1040A>G	c.(1039-1041)AAC>AGC	p.N347S		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	347	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					AACCTGAAGAACATGGCCTTC	0.473													6	61					0	0	0.001168	0	0
ITGBL1	9358	broad.mit.edu	37	13	102359248	102359248	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:102359248G>A	uc001vpb.2	+	9	1494	c.1275G>A	c.(1273-1275)GGG>GGA	p.G425G	ITGBL1_uc010agb.2_Silent_p.G376G|ITGBL1_uc001vpc.3_Silent_p.G284G	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	425	IX.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TGTGCTCGGGGAAGGGTGAGT	0.478													8	85					0	0	0.000443	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111896267	111896267	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:111896267C>T	uc001vrs.2	+	8	1121	c.871C>T	c.(871-873)CAG>TAG	p.Q291*	ARHGEF7_uc001vrr.2_Nonsense_Mutation_p.Q270*|ARHGEF7_uc001vrt.2_Nonsense_Mutation_p.Q241*|ARHGEF7_uc010tjn.1_Intron|ARHGEF7_uc001vru.1_Nonsense_Mutation_p.Q113*|ARHGEF7_uc001vrv.3_Nonsense_Mutation_p.Q113*|ARHGEF7_uc001vrw.3_Nonsense_Mutation_p.Q113*|ARHGEF7_uc001vrx.3_Nonsense_Mutation_p.Q113*|ARHGEF7_uc010tjo.1_Nonsense_Mutation_p.Q188*|ARHGEF7_uc010tjp.1_Nonsense_Mutation_p.Q35*|ARHGEF7_uc010agn.1_Nonsense_Mutation_p.Q35*	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	291	DH.				apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			TAAAGAACTTCAGACTGTGCT	0.318													14	19					0	0	0.002450	0	0
FAM70B	348013	broad.mit.edu	37	13	114503840	114503840	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr13:114503840T>G	uc001vuh.2	+	6	491	c.464T>G	c.(463-465)GTG>GGG	p.V155G		NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	155						integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			CAGCTGAAGGTGAGAAGCAAC	0.647													9	8					0	0	0.001368	0	0
POTEG	404785	broad.mit.edu	37	14	19553564	19553564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:19553564G>A	uc001vuz.1	+	1	200	c.148G>A	c.(148-150)GAC>AAC	p.D50N	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	50										ovary(1)	1						TGGAGACCACGACGATTCTGC	0.607													37	474					0	0	0.003610	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215950	20215950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:20215950G>A	uc010tkt.1	+	1	364	c.364G>A	c.(364-366)GAC>AAC	p.D122N		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CATGGCCTATGACAGGTATGT	0.502													6	9					0	0	0.001984	0	0
OR4N2	390429	broad.mit.edu	37	14	20295822	20295822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:20295822C>T	uc010tkv.1	+	1	215	c.215C>T	c.(214-216)TCC>TTC	p.S72F		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGGATGCATCCTACTCCTTC	0.493													8	47					0	0	0.003163	0	0
OR4K2	390431	broad.mit.edu	37	14	20344713	20344713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:20344713G>A	uc001vwh.1	+	1	287	c.287G>A	c.(286-288)GGC>GAC	p.G96D		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCTTTTGATGGCTGCCTTACC	0.408													28	51					0	0	0.001061	0	0
OR4K2	390431	broad.mit.edu	37	14	20345254	20345254	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:20345254C>T	uc001vwh.1	+	1	828	c.828C>T	c.(826-828)ACC>ACT	p.T276T		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGTTTTATACCATCTTTACTC	0.358													15	27					0	0	0.004990	0	0
OR4K15	81127	broad.mit.edu	37	14	20444677	20444677	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:20444677C>T	uc010tkx.1	+	1	1000	c.1000C>T	c.(1000-1002)CAG>TAG	p.Q334*		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	334	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GAAGCCTAGTCAGGTTTCTGT	0.383													5	6					0	0	0.001168	0	0
OR4K17	390436	broad.mit.edu	37	14	20585705	20585706	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:20585705_20585706GA>AT	uc001vwo.1	+	1	140_141	c.140_141GA>AT	c.(139-141)GGA>GAT	p.G47D		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		ATTTTGCTGGGACTGACCAGCT	0.426													22	109					0	0	0.004672	0	0
OR11H4	390442	broad.mit.edu	37	14	20711058	20711058	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:20711058C>T	uc010tld.1	+	1	108	c.108C>T	c.(106-108)TTC>TTT	p.F36F		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		TTCAGATTTTCCTCTTCTCAT	0.443													4	30					0	0	0.000248	0	0
FLJ10357	55701	broad.mit.edu	37	14	21549984	21549984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:21549984C>T	uc001vzp.2	+	14	2986	c.2957C>T	c.(2956-2958)TCG>TTG	p.S986L	FLJ10357_uc001vzo.1_Missense_Mutation_p.S65L|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Missense_Mutation_p.S272L	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	986					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		CGCAGCCCCTCGCCCAGCCTC	0.711													6	6					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	14	22111199	22111199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:22111199G>A	uc001wbk.3	+	1	91	c.58G>A	c.(58-60)GGA>AGA	p.G20R						SubName: Full=Putative uncharacterized protein ENSP00000374930;																		GCAGATGTGGGGAGTTTTCCT	0.463													7	34					0	0	0.004482	0	0
CEBPE	1053	broad.mit.edu	37	14	23587028	23587028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:23587028G>A	uc001wiv.1	-	2	688	c.514C>T	c.(514-516)CCT>TCT	p.P172S		NM_001805	NP_001796	Q15744	CEBPE_HUMAN	CCAAT/enhancer binding protein epsilon	172						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0064)		GTGGCCAAAGGGGCCTGGAGG	0.672													12	22					0	0	0.001368	0	0
MYH7	4625	broad.mit.edu	37	14	23885492	23885492	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:23885492G>A	uc001wjx.2	-	34	4780	c.4674C>T	c.(4672-4674)ATC>ATT	p.I1558I		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1558	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GGGCCCGGAGGATCTTGCCCT	0.647													6	86					0	0	0.001984	0	0
REC8	9985	broad.mit.edu	37	14	24649108	24649108	+	Silent	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:24649108C>A	uc001wmr.2	+	20	1981	c.1554C>A	c.(1552-1554)CTC>CTA	p.L518L	REC8_uc001wms.2_Silent_p.L518L	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	518					mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		TCTACCTGCTCCTGGGTGAGT	0.637													20	28					2.4624e-09	4.81715e-09	0.001216	1	0
NYNRIN	57523	broad.mit.edu	37	14	24877315	24877316	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:24877315_24877316CC>TT	uc001wpf.3	+	3	757_758	c.439_440CC>TT	c.(439-441)CCT>TTT	p.P147F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	147					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GGGCCCTGCCCCTCTGCTGACC	0.678													6	18					0	0	0.004672	0	0
FOXG1	2290	broad.mit.edu	37	14	29237749	29237749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:29237749C>T	uc001wqe.2	+	1	1463	c.1264C>T	c.(1264-1266)CCG>TCG	p.P422S		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	422					axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		CCCCCACGTCCCGCACCCGTC	0.682													12	23					0	0	0.001368	0	0
STRN3	29966	broad.mit.edu	37	14	31381349	31381349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:31381349G>A	uc001wqu.2	-	11	1630	c.1414C>T	c.(1414-1416)CCC>TCC	p.P472S	STRN3_uc001wqv.2_Missense_Mutation_p.P388S|STRN3_uc010tpj.1_RNA	NM_001083893	NP_001077362	Q13033	STRN3_HUMAN	nuclear autoantigen isoform 1	472					negative regulation of estrogen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus	cytoplasm|dendrite|Golgi apparatus|neuronal cell body|nucleoplasm|nucleus|plasma membrane|protein complex	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.0124)		GTATACTTGGGATTCCATGTC	0.423													62	61					0	0	0.003610	0	0
NPAS3	64067	broad.mit.edu	37	14	34270275	34270275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:34270275G>A	uc001wru.2	+	12	2826	c.2762G>A	c.(2761-2763)GGC>GAC	p.G921D	NPAS3_uc001wrs.2_Missense_Mutation_p.G908D|NPAS3_uc001wrt.2_Missense_Mutation_p.G889D|NPAS3_uc001wrv.2_Missense_Mutation_p.G891D	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	921					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		TACAGCAACGGCATCCACGCG	0.682													3	5					0	0	0.004672	0	0
PSMA6	5687	broad.mit.edu	37	14	35778136	35778136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:35778136C>T	uc001wtd.2	+	3	297	c.188C>T	c.(187-189)TCC>TTC	p.S63F	KIAA0391_uc001wta.2_RNA|PSMA6_uc010tpt.1_5'UTR|PSMA6_uc010tpu.1_5'UTR	NM_002791	NP_002782	P60900	PSA6_HUMAN	proteasome alpha 6 subunit	63					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nuclear matrix|polysome|proteasome core complex, alpha-subunit complex|sarcomere	NF-kappaB binding|purine ribonucleoside triphosphate binding|RNA binding|threonine-type endopeptidase activity				0	Breast(36;0.0519)|Hepatocellular(127;0.158)		Lung(238;3.81e-05)|LUAD - Lung adenocarcinoma(48;5.59e-05)|Epithelial(34;0.00342)|all cancers(34;0.00973)	GBM - Glioblastoma multiforme(112;0.0234)		TTATTGGATTCCAGCACAGTG	0.274													102	147					0	0	0.003610	0	0
MIA2	117153	broad.mit.edu	37	14	39716536	39716537	+	Missense_Mutation	DNP	GT	AG	AG	rs144276859		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:39716536_39716537GT>AG	uc001wux.2	+	4	952_953	c.758_759GT>AG	c.(757-759)AGT>AAG	p.S253K	MIA2_uc010amy.1_Missense_Mutation_p.S184K	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	253						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TCATTTCGGAGTAGAAAAATAG	0.391													6	39					0	0	0.004672	0	0
FAM179B	23116	broad.mit.edu	37	14	45537756	45537756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:45537756C>T	uc001wvv.2	+	17	4929	c.4720C>T	c.(4720-4722)CCA>TCA	p.P1574S	FAM179B_uc001wvw.2_Missense_Mutation_p.P1627S|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1574	HEAT 6.						binding			skin(2)|upper_aerodigestive_tract(1)	3						CATGCTAATTCCAGCAATAGT	0.388													9	37					0	0	0.000673	0	0
FBXO34	55030	broad.mit.edu	37	14	55818526	55818526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:55818526C>T	uc001xbu.2	+	2	1663	c.1418C>T	c.(1417-1419)TCC>TTC	p.S473F	FBXO34_uc001xbv.2_RNA|FBXO34_uc010aoo.2_Missense_Mutation_p.S473F	NM_017943	NP_060413	Q9NWN3	FBX34_HUMAN	F-box only protein 34	473										ovary(2)|lung(2)|skin(1)	5						ATTTTAAACTCCTGTGAAGAC	0.423													43	56					0	0	0.002852	0	0
C14orf105	55195	broad.mit.edu	37	14	57960304	57960304	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:57960304A>G	uc001xcy.2	-	1	273	c.130T>C	c.(130-132)TCA>CCA	p.S44P	C14orf105_uc010trl.1_Missense_Mutation_p.S44P|C14orf105_uc010trm.1_5'UTR|C14orf105_uc010trn.1_5'UTR|C14orf105_uc001xcz.2_Missense_Mutation_p.S44P|C14orf105_uc010aox.1_RNA|C14orf105_uc010aoy.1_5'UTR	NM_018168	NP_060638	Q9NVL8	CN105_HUMAN	hypothetical protein LOC55195	44											0						AGTGAATATGAAGTCTTTTCT	0.443													4	21					0	0	0.000602	0	0
KCNH5	27133	broad.mit.edu	37	14	63175101	63175101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:63175101G>A	uc001xfx.2	-	11	2143	c.2092C>T	c.(2092-2094)CTC>TTC	p.L698F	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	698	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GGAATGCTGAGGGTCACCTCA	0.542													55	96					0	0	0.003610	0	0
GPHB5	122876	broad.mit.edu	37	14	63784480	63784480	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:63784480C>T	uc010apu.2	-	1	84	c.84G>A	c.(82-84)GGG>GGA	p.G28G	GPHB5_uc001xgc.2_Silent_p.G18G	NM_145171	NP_660154	Q86YW7	GPHB5_HUMAN	glycoprotein beta 5	28						extracellular region	hormone activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00372)|all cancers(60;0.0226)|BRCA - Breast invasive adenocarcinoma(234;0.0978)		TGCGCAGGTTCCCACTGGAGG	0.622													13	41					0	0	0.001855	0	0
PPP2R5E	5529	broad.mit.edu	37	14	63888727	63888727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:63888727G>A	uc001xgd.1	-	4	1030	c.440C>T	c.(439-441)TCG>TTG	p.S147L	PPP2R5E_uc010tsf.1_Missense_Mutation_p.S71L|PPP2R5E_uc010tsg.1_Missense_Mutation_p.S71L|PPP2R5E_uc001xge.2_Missense_Mutation_p.S147L|PPP2R5E_uc010tsh.1_Missense_Mutation_p.S147L|PPP2R5E_uc001xgf.1_RNA	NM_006246	NP_006237	Q16537	2A5E_HUMAN	epsilon isoform of regulatory subunit B56,	147					signal transduction	cytoplasm|intracellular membrane-bounded organelle|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00197)|all cancers(60;0.0153)|BRCA - Breast invasive adenocarcinoma(234;0.128)		GTGTGGCCACGATGCCTCAAG	0.373													10	53					0	0	0.000673	0	0
SYNE2	23224	broad.mit.edu	37	14	64628973	64628973	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:64628973C>T	uc001xgm.2	+	88	16508	c.16278C>T	c.(16276-16278)CCC>CCT	p.P5426P	SYNE2_uc001xgl.2_Silent_p.P5426P|SYNE2_uc010apy.2_Silent_p.P1811P|SYNE2_uc001xgn.2_Silent_p.P388P|SYNE2_uc001xgo.2_RNA|SYNE2_uc001xgp.2_Silent_p.P155P|SYNE2_uc010aqa.2_5'UTR	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5426	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AGATCCTGCCCCCAGCCCTGC	0.547													33	40					0	0	0.001287	0	0
PLEKHH1	57475	broad.mit.edu	37	14	68029204	68029204	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:68029204C>T	uc001xjl.1	+	7	998	c.856C>T	c.(856-858)CTG>TTG	p.L286L		NM_020715	NP_065766	Q9ULM0	PKHH1_HUMAN	pleckstrin homology domain containing, family H	286						cytoskeleton	binding				0				all cancers(60;0.000771)|OV - Ovarian serous cystadenocarcinoma(108;0.00502)|BRCA - Breast invasive adenocarcinoma(234;0.011)		GGGTGAGGGTCTGGTTACTGC	0.582													12	20					0	0	0.001855	0	0
PLEKHH1	57475	broad.mit.edu	37	14	68044784	68044784	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:68044784G>A	uc001xjl.1	+	19	2761	c.2619G>A	c.(2617-2619)GTG>GTA	p.V873V	PLEKHH1_uc010tsw.1_Silent_p.V441V|PLEKHH1_uc001xjn.1_Silent_p.V388V|PLEKHH1_uc010tsx.1_5'Flank	NM_020715	NP_065766	Q9ULM0	PKHH1_HUMAN	pleckstrin homology domain containing, family H	873	MyTH4.					cytoskeleton	binding				0				all cancers(60;0.000771)|OV - Ovarian serous cystadenocarcinoma(108;0.00502)|BRCA - Breast invasive adenocarcinoma(234;0.011)		CTGCCTCGGTGGACTACCATG	0.602													11	48					0	0	0.000673	0	0
ADAM21	8747	broad.mit.edu	37	14	70924751	70924751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:70924751G>A	uc001xmd.2	+	1	535	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	179					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		AACAGAGAAGGAAGTAGCACG	0.458													10	28					0	0	0.000673	0	0
ADAM21	8747	broad.mit.edu	37	14	70925538	70925538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:70925538G>A	uc001xmd.2	+	1	1322	c.1322G>A	c.(1321-1323)AGG>AAG	p.R441K		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	441	Disintegrin.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TGCACTCTAAGGCCTGGGGCT	0.507													5	14					0	0	0.001168	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72190579	72190579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:72190579C>T	uc001xms.2	+	16	4835	c.4487C>T	c.(4486-4488)TCC>TTC	p.S1496F	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S1475F|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S1475F|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S1496F|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S950F|SIPA1L1_uc001xmw.2_Missense_Mutation_p.S261F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1496					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACCATAAACTCCGTGGGATTT	0.428													20	75					0	0	0.001216	0	0
DPF3	8110	broad.mit.edu	37	14	73190413	73190413	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:73190413A>G	uc001xnc.2	-	5	466	c.453T>C	c.(451-453)AAT>AAC	p.N151N	DPF3_uc001xnd.1_RNA|DPF3_uc001xnf.2_RNA|DPF3_uc010ari.1_Silent_p.N151N|DPF3_uc010ttq.1_Silent_p.N161N	NM_012074	NP_036206	Q92784	DPF3_HUMAN	D4, zinc and double PHD fingers, family 3	151					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex	nucleic acid binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00649)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		CTTCTTCTACATTTTCATCAT	0.388													58	101					0	0	0.003610	0	0
C14orf43	91748	broad.mit.edu	37	14	74206606	74206606	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:74206606G>A	uc001xot.2	-	2	889	c.106C>T	c.(106-108)CAG>TAG	p.Q36*	C14orf43_uc001xou.2_Nonsense_Mutation_p.Q36*|C14orf43_uc010tud.1_Nonsense_Mutation_p.Q36*|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	36					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		ATGGACTGCTGGGGGGGCTGC	0.667													38	31					0	0	0.001485	0	0
C14orf115	55237	broad.mit.edu	37	14	74824770	74824770	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:74824770C>T	uc001xpw.3	+	2	1475	c.1284C>T	c.(1282-1284)TTC>TTT	p.F428F		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	428					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		AACGCAGGTTCCCTGGCATCT	0.572													32	40					0	0	0.003271	0	0
YLPM1	56252	broad.mit.edu	37	14	75248527	75248527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:75248527C>T	uc001xqj.3	+	4	1905	c.1781C>T	c.(1780-1782)CCT>CTT	p.P594L	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CTCCCCCCACCTTCCCTGTCT	0.592													25	38					0	0	0.001271	0	0
EIF2B2	8892	broad.mit.edu	37	14	75469738	75469738	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:75469738C>T	uc001xrc.1	+	1	127	c.45C>T	c.(43-45)ATC>ATT	p.I15I		NM_014239	NP_055054	P49770	EI2BB_HUMAN	eukaryotic translation initiation factor 2B,	15					cellular response to stimulus|myelination|oligodendrocyte development|ovarian follicle development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	ATP binding|GTP binding|protein binding|translation initiation factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00661)		CAGAGAGGATCGAGAGCTTCG	0.627													11	54					0	0	0.002450	0	0
MLH3	27030	broad.mit.edu	37	14	75485552	75485552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:75485552G>A	uc001xrd.1	-	12	4438	c.4222C>T	c.(4222-4224)CAC>TAC	p.H1408Y	MLH3_uc001xre.1_Missense_Mutation_p.H1384Y	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	1408					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		TGTTCCAAGTGGTCTATGTCA	0.453								MMR					26	75					0	0	0.002445	0	0
KCNK10	54207	broad.mit.edu	37	14	88729891	88729891	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:88729891G>A	uc001xwo.2	-	2	499	c.42C>T	c.(40-42)GCC>GCT	p.A14A	KCNK10_uc001xwm.2_Silent_p.A19A|KCNK10_uc001xwn.2_Silent_p.A19A	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	14	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						CTGCGGGAACGGCCACTGAGG	0.557													23	29					0	0	0.001882	0	0
KCNK13	56659	broad.mit.edu	37	14	90651153	90651153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:90651153G>A	uc001xye.1	+	2	1475	c.1033G>A	c.(1033-1035)GAG>AAG	p.E345K		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	345	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				GCTCTCAGGGGAGATGATCTC	0.617													26	59					0	0	0.001786	0	0
TTC7B	145567	broad.mit.edu	37	14	91007921	91007921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:91007921G>A	uc001xyp.2	-	20	2445	c.2323C>T	c.(2323-2325)CAC>TAC	p.H775Y	TTC7B_uc001xyo.2_Missense_Mutation_p.H219Y|TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	775	TPR 10.						binding			ovary(2)	2		Melanoma(154;0.222)				CCTAGCTGGTGAAGGATCAGG	0.602													6	20					0	0	0.001168	0	0
CATSPERB	79820	broad.mit.edu	37	14	92055994	92055994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:92055994G>A	uc001xzs.1	-	24	2980	c.2840C>T	c.(2839-2841)CCA>CTA	p.P947L	CATSPERB_uc010aub.1_Missense_Mutation_p.P469L	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	947					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TTGTGTAATTGGAAACTTAAA	0.363													8	15					0	0	0.004482	0	0
FBLN5	10516	broad.mit.edu	37	14	92336628	92336628	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:92336628G>A	uc001xzx.3	-	11	1760	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I	TC2N_uc001xzv.3_5'Flank|FBLN5_uc010aud.2_Silent_p.I434I|FBLN5_uc010aue.2_Silent_p.I470I|FBLN5_uc001xzw.2_RNA	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	429					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				CTCTGAAGTTGATGACAGTGT	0.577													63	87					0	0	0.003610	0	0
TRIP11	9321	broad.mit.edu	37	14	92466440	92466440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:92466440C>T	uc001xzy.2	-	12	5358	c.4570G>A	c.(4570-4572)GAG>AAG	p.E1524K	TRIP11_uc010auf.1_Missense_Mutation_p.E1260K	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1524	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		TGATTTAACTCTCCAGTCTTG	0.328			T	PDGFRB	AML								6	39					0	0	0.001984	0	0
RIN3	79890	broad.mit.edu	37	14	93125560	93125560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:93125560C>T	uc001yap.2	+	7	2233	c.2081C>T	c.(2080-2082)GCC>GTC	p.A694V	RIN3_uc010auk.2_Missense_Mutation_p.A356V|RIN3_uc001yaq.2_Missense_Mutation_p.A619V|RIN3_uc001yar.1_Missense_Mutation_p.A356V|RIN3_uc001yas.1_Missense_Mutation_p.A356V	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	694	Interaction with RAB5B.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				CTGAAGGAAGCCATCAACTCA	0.522													74	202					0	0	0.003610	0	0
BTBD7	55727	broad.mit.edu	37	14	93708971	93708971	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:93708971T>C	uc001ybo.2	-	11	3373	c.3047A>G	c.(3046-3048)CAT>CGT	p.H1016R	BTBD7_uc010aur.2_Missense_Mutation_p.H541R|BTBD7_uc010two.1_Missense_Mutation_p.H836R|BTBD7_uc001ybp.2_Missense_Mutation_p.H665R	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	1016										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		TCTGTGTAGATGCCCGTCAGG	0.502													34	113					0	0	0.005524	0	0
KIAA1409	57578	broad.mit.edu	37	14	94046668	94046668	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:94046668G>A	uc001ybv.1	+	16	2159	c.2076G>A	c.(2074-2076)CAG>CAA	p.Q692Q	KIAA1409_uc001ybs.1_Silent_p.Q692Q	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	869						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TCTGCTATCAGCTTGCTTGTG	0.478													21	54					0	0	0.002780	0	0
PPP4R4	57718	broad.mit.edu	37	14	94712813	94712813	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:94712813C>T	uc001ycs.1	+	14	1702	c.1548C>T	c.(1546-1548)GTC>GTT	p.V516V		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	516						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TGCCACATGTCATATCAAGCG	0.408													40	37					0	0	0.001706	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756535	94756535	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:94756535G>A	uc001yct.2	-	2	862	c.396C>T	c.(394-396)GCC>GCT	p.A132A	SERPINA10_uc001ycu.3_Silent_p.A132A	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	132					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		TGGGCTTCAGGGCCTGCAAGT	0.597													33	39					0	0	0.003755	0	0
SERPINA11	256394	broad.mit.edu	37	14	94914675	94914675	+	Missense_Mutation	SNP	C	T	T	rs113919455	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:94914675C>T	uc001ydd.1	-	2	497	c.437G>A	c.(436-438)CGA>CAA	p.R146Q		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	146					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		AGGCTTTAGTCGCTTGTCTAG	0.527													45	158					0	0	0.002522	0	0
SERPINA5	5104	broad.mit.edu	37	14	95054004	95054004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:95054004G>A	uc001ydm.2	+	3	515	c.305G>A	c.(304-306)AGC>AAC	p.S102N	SERPINA5_uc010ave.2_Missense_Mutation_p.S102N|SERPINA5_uc001ydn.1_Missense_Mutation_p.S102N	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	102					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CTCCAGAAAAGCTCAGAGAAG	0.592													4	23					0	0	0.000248	0	0
SERPINA5	5104	broad.mit.edu	37	14	95056491	95056491	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:95056491C>G	uc001ydm.2	+	4	943	c.733C>G	c.(733-735)CTC>GTC	p.L245V	SERPINA5_uc010ave.2_Missense_Mutation_p.L245V|SERPINA3_uc001ydo.3_5'Flank	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	245					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	GTATCACTACCTCCTGGACCG	0.572													8	31					0	0	0.003080	0	0
DICER1	23405	broad.mit.edu	37	14	95556998	95556999	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:95556998_95556999GG>AA	uc001ydw.2	-	28	5787_5788	c.5605_5606CC>TT	c.(5605-5607)CCG>TTG	p.P1869L	DICER1_uc010avh.1_Missense_Mutation_p.P767L|DICER1_uc001ydv.2_Missense_Mutation_p.P1859L|DICER1_uc001ydx.2_Missense_Mutation_p.P1869L	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1869	DRBM.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		TCTCTCAGCCGGGCTGTAAAAA	0.426			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				59	67					0	0	0.004672	0	0
BDKRB1	623	broad.mit.edu	37	14	96731048	96731048	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:96731048G>A	uc001yfh.2	+	3	1237	c.1029G>A	c.(1027-1029)AGG>AGA	p.R343R	BDKRB1_uc010avn.2_Intron	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	343	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		CATCCCATAGGAAAGAAATCT	0.383													80	102					0	0	0.003610	0	0
SETD3	84193	broad.mit.edu	37	14	99871664	99871664	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:99871664G>A	uc001ygc.2	-	10	1139	c.969C>T	c.(967-969)ATC>ATT	p.I323I		NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	323					peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				AACCACTGTGGATCACAAACT	0.398													29	37					0	0	0.002096	0	0
BEGAIN	57596	broad.mit.edu	37	14	101004369	101004369	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:101004369G>A	uc010txa.1	-	6	1865	c.1719C>T	c.(1717-1719)GGC>GGT	p.G573G	BEGAIN_uc001yhp.2_Silent_p.G509G|BEGAIN_uc001yhq.2_Silent_p.G573G	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	573						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				TCAGCCCCGAGCCACCAGTCC	0.687													6	5					0	0	0.001984	0	0
TECPR2	9895	broad.mit.edu	37	14	102963977	102963977	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:102963977C>T	uc001ylw.1	+	19	4150	c.4002C>T	c.(4000-4002)GCC>GCT	p.A1334A	TECPR2_uc010txx.1_Silent_p.A497A	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	1334	TECPR 6.						protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GAGACCTCGCCCGGCGGTACG	0.677													3	7					0	0	0.000248	0	0
TDRD9	122402	broad.mit.edu	37	14	104491924	104491924	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:104491924G>A	uc001yom.3	+	26	2772	c.2742G>A	c.(2740-2742)TGG>TGA	p.W914*	TDRD9_uc001yon.3_Nonsense_Mutation_p.W652*	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	914					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				GACACTTTTGGGGATACAGGA	0.438													12	62					0	0	0.000978	0	0
TDRD9	122402	broad.mit.edu	37	14	104491926	104491926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:104491926G>A	uc001yom.3	+	26	2774	c.2744G>A	c.(2743-2745)GGA>GAA	p.G915E	TDRD9_uc001yon.3_Missense_Mutation_p.G653E	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	915					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				CACTTTTGGGGATACAGGATT	0.433													13	62					0	0	0.001368	0	0
INF2	64423	broad.mit.edu	37	14	105174795	105174795	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:105174795C>T	uc001ypb.2	+	9	1901	c.1758C>T	c.(1756-1758)TCC>TCT	p.S586S	INF2_uc010tyi.1_Silent_p.S586S|INF2_uc001ypc.2_Silent_p.S586S|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	586	FH2.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		TGTGGGCGTCCCTGAGCAGCC	0.677											OREG0022959	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	40					0	0	0.003954	0	0
ADAM6	8755	broad.mit.edu	37	14	106111115	106111115	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:106111115C>T	uc010tyt.1	-	3640		c.60646G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						ACCGATGGGCCCTTGGTGGAG	0.672													5	45					0	0	0.001168	0	0
ADAM6	8755	broad.mit.edu	37	14	106405836	106405836	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:106405836C>T	uc010tyt.1	-	2358		c.42228G>A								Parts of antibodies, mostly variable regions.												0						AGACACTGTCCCCGGAGATGG	0.572													21	30					0	0	0.001216	0	0
ADAM6	8755	broad.mit.edu	37	14	106692133	106692133	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:106692133C>T	uc010tyt.1	-	753		c.20320G>A								Parts of antibodies, mostly variable regions.												0						ATGGTGAATCCTCGGTGCTCA	0.493													25	65					0	0	0.005443	0	0
ADAM6	8755	broad.mit.edu	37	14	106714464	106714464	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:106714464C>T	uc010tyt.1	-	647		c.19108G>A								Parts of antibodies, mostly variable regions.												0						ATCTGCCTTTCACAGACGTGG	0.493													20	13					0	0	0.002299	0	0
ADAM6	8755	broad.mit.edu	37	14	106733245	106733245	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:106733245G>A	uc010tyt.1	-	547		c.17491C>T								Parts of antibodies, mostly variable regions.												0						ACTCTGCCCTGGAACTTCTGT	0.522													49	183					0	0	0.003214	0	0
ADAM6	8755	broad.mit.edu	37	14	106790928	106790928	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:106790928C>T	uc010tyt.1	-	387		c.14690G>A								Parts of antibodies, mostly variable regions.												0						CTGAGCGCCCCCTGCCGCTGA	0.577													8	39					0	0	0.003080	0	0
ADAM6	8755	broad.mit.edu	37	14	106830011	106830011	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:106830011C>T	uc010tyt.1	-	323		c.12494G>A			uc001ysx.1_Intron					Parts of antibodies, mostly variable regions.												0						GAGGAAGAACCACAGGTGTTT	0.502													8	36					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	107095318	107095318	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr14:107095318G>A	uc010tyt.1	-	101		c.4769C>T								Parts of antibodies, mostly variable regions.												0						TCCAGCTCCAGTAGTAACCAC	0.597													24	21					0	0	0.003954	0	0
LOC646214	646214	broad.mit.edu	37	15	21936663	21936663	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:21936663G>A	uc010tzj.1	-	1		c.4077C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TAATTCTTTGGCTGAACCCCT	0.398													14	117					0	0	0.002450	0	0
OR4N4	283694	broad.mit.edu	37	15	22382955	22382955	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:22382955C>T	uc001yuc.1	+	7	1464	c.483C>T	c.(481-483)GTC>GTT	p.V161V	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.V161V	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCCAGGTGGTCCTCATCCTCC	0.527													19	37					0	0	0.002299	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22853738	22853738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:22853738C>T	uc001yur.3	+	12	1506	c.1376C>T	c.(1375-1377)TCC>TTC	p.S459F	TUBGCP5_uc001yuq.2_Missense_Mutation_p.S459F|TUBGCP5_uc010axz.1_Missense_Mutation_p.S46F	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	459					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		CCTCAGGTCTCCCTCCTTTTC	0.542													4	20					0	0	0.000248	0	0
MKRN3	7681	broad.mit.edu	37	15	23812438	23812438	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:23812438C>T	uc001ywh.3	+	1	1985	c.1509C>T	c.(1507-1509)TTC>TTT	p.F503F	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Intron	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	503						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		AAGAATATTTCAATTTGATTC	0.458													41	65					0	0	0.001706	0	0
NDN	4692	broad.mit.edu	37	15	23931540	23931540	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:23931540G>A	uc001ywk.2	-	1	911	c.825C>T	c.(823-825)ATC>ATT	p.I275I		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	275	MAGE.				negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		GGAACTCCATGATTTGCATCT	0.582									Prader-Willi_syndrome				17	44					0	0	0.004990	0	0
SNORD116-4	100033416	broad.mit.edu	37	15	25336868	25336868	+	Splice_Site	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:25336868T>C	uc001yxh.1	+	18		c.2527_splice	c.e18+2		SNORD116-4_uc001yxm.1_Splice_Site|IPW_uc001yxn.3_Splice_Site|SNORD116-28_uc001yxy.2_Splice_Site|IPW_uc001yyb.3_Splice_Site|uc001yyd.2_Splice_Site|SNORD116-23_uc001yyh.2_5'Flank|SNORD116-24_uc001yyj.2_5'Flank					Homo sapiens clone kid4 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						ATCCCACAGGTTGGTAAATGT	0.493													8	18					0	0	0.003080	0	0
GABRG3	2567	broad.mit.edu	37	15	27572135	27572135	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:27572135C>T	uc001zbg.1	+	4	616	c.450C>T	c.(448-450)CTC>CTT	p.L150L	GABRG3_uc001zbf.2_Silent_p.L150L	NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	150	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		CCAATCAGCTCCTCCGGATTT	0.453													16	34					0	0	0.004990	0	0
HERC2	8924	broad.mit.edu	37	15	28370267	28370267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:28370267G>A	uc001zbj.2	-	84	12981	c.12875C>T	c.(12874-12876)CCT>CTT	p.P4292L		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4292	RCC1 19.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TACCAACCGAGGCCTCTGGAT	0.557													59	127					0	0	0.003610	0	0
HERC2	8924	broad.mit.edu	37	15	28424160	28424160	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:28424160C>T	uc001zbj.2	-	59	9142	c.9036G>A	c.(9034-9036)AAG>AAA	p.K3012K		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3012	RCC1 7.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AGGCATACACCTTCCCTTCCA	0.517													4	47					0	0	0.000602	0	0
MTMR15	22909	broad.mit.edu	37	15	31202912	31202912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:31202912G>A	uc001zff.2	+	4	1762	c.1471G>A	c.(1471-1473)GGA>AGA	p.G491R	MTMR15_uc001zfc.3_Missense_Mutation_p.G491R|MTMR15_uc010azw.2_Missense_Mutation_p.G491R|MTMR15_uc001zfd.3_Missense_Mutation_p.G491R|MTMR15_uc001zfe.2_Missense_Mutation_p.G96R	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	491					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		GAATCCCAATGGACAGAAACA	0.468								Direct_reversal_of_damage|Editing_and_processing_nucleases					17	70					0	0	0.004990	0	0
TRPM1	4308	broad.mit.edu	37	15	31294290	31294290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:31294290G>A	uc001zfm.2	-	27	4675	c.4547C>T	c.(4546-4548)CCT>CTT	p.P1516L	TRPM1_uc010azy.2_Missense_Mutation_p.P1423L|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1516	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		AGGGATTCGAGGAATTGCTTC	0.453													66	185					0	0	0.003610	0	0
LPCAT4	254531	broad.mit.edu	37	15	34654491	34654491	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:34654491A>G	uc001zig.2	-	10	1010	c.916T>C	c.(916-918)TTT>CTT	p.F306L		NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	306					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						CTCCCTACAAACTCACATTCG	0.547													48	68					0	0	0.003610	0	0
FSIP1	161835	broad.mit.edu	37	15	39910330	39910330	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:39910330C>T	uc001zki.2	-	11	1523	c.1305G>A	c.(1303-1305)GAG>GAA	p.E435E		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	435										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		GTGTTACGTCCTCAATGTCTT	0.383													38	52					0	0	0.004878	0	0
PLCB2	5330	broad.mit.edu	37	15	40591081	40591081	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:40591081G>A	uc001zld.2	-	9	1069	c.768C>T	c.(766-768)TCC>TCT	p.S256S	PLCB2_uc010bbo.2_Silent_p.S256S|PLCB2_uc010ucm.1_Silent_p.S256S	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	256					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		GGAACAGCAGGGAGTTAAGCC	0.567													52	57					0	0	0.003610	0	0
CASC5	57082	broad.mit.edu	37	15	40942525	40942525	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:40942525A>T	uc010bbs.1	+	19	6360	c.6199A>T	c.(6199-6201)AAA>TAA	p.K2067*	CASC5_uc010bbt.1_Nonsense_Mutation_p.K2041*	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2067	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.|Potential.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		GGATGAAGAGAAAAACAATCC	0.333													46	128					0	0	0.003610	0	0
SPTBN5	51332	broad.mit.edu	37	15	42156208	42156208	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:42156208A>C	uc001zos.2	-	40	7161	c.6828T>G	c.(6826-6828)GAT>GAG	p.D2276E		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2311					actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		TGATGCAGGCATCACCCACTG	0.587													21	59					0	0	0.002299	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42363337	42363337	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:42363337G>A	uc001zox.2	-	17	1955	c.1860C>T	c.(1858-1860)GAC>GAT	p.D620D		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	620	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		AGGTGGAGAAGTCTTTGTGGC	0.637													9	37					0	0	0.000673	0	0
TP53BP1	7158	broad.mit.edu	37	15	43713272	43713272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:43713272G>A	uc001zrs.2	-	20	4334	c.4186C>T	c.(4186-4188)CGT>TGT	p.R1396C	TP53BP1_uc010udp.1_Missense_Mutation_p.R1396C|TP53BP1_uc001zrq.3_Missense_Mutation_p.R1401C|TP53BP1_uc001zrr.3_Missense_Mutation_p.R1401C|TP53BP1_uc010udq.1_Missense_Mutation_p.R1401C	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1396	GAR.			R->A: No detectable effect on methylation by PRMT1 (in vitro). Loss of methylation; when associated with A-1398; A-1400; A- 1401 and A-1403.|R->K: No detectable effect on methylation by PRMT1 (in vitro).	double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		CCACGCCCACGAGGCGTGACT	0.572								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					39	67					0	0	0.001287	0	0
C15orf48	84419	broad.mit.edu	37	15	45723006	45723006	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:45723006C>T	uc001zvg.2	+	2	130	c.12C>T	c.(10-12)TTC>TTT	p.F4F	C15orf48_uc001zvh.2_Silent_p.F4F|MIR147B_hsa-mir-147b|MI0005544_5'Flank	NM_197955	NP_922946	Q9C002	NMES1_HUMAN	normal mucosa of esophagus specific 1	4						nucleus				ovary(1)	1		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.67e-16)|GBM - Glioblastoma multiforme(94;1.71e-06)		TGAGCTTTTTCCAACTCCTGA	0.373											OREG0023107	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	45					0	0	0.002450	0	0
SQRDL	58472	broad.mit.edu	37	15	45968309	45968309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:45968309G>A	uc001zvt.2	+	7	854	c.665G>A	c.(664-666)CGA>CAA	p.R222Q	SQRDL_uc001zvu.2_Missense_Mutation_p.R222Q|SQRDL_uc001zvv.2_Missense_Mutation_p.R222Q	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	222							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		ACAGGGAAGCGATCCAAGGCC	0.433													97	197					0	0	0.003610	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49293287	49293287	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:49293287T>A	uc001zxe.1	-	15	2169	c.2035A>T	c.(2035-2037)AAT>TAT	p.N679Y	SECISBP2L_uc001zxd.1_Missense_Mutation_p.N634Y|SECISBP2L_uc010bep.1_Missense_Mutation_p.N441Y	NM_014701	NP_055516	Q93073	SBP2L_HUMAN	SECIS binding protein 2-like	679										breast(1)|skin(1)	2						AGAACCTGATTACAATACCTG	0.333													6	16					0	0	0.001984	0	0
SCG3	29106	broad.mit.edu	37	15	52005530	52005530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:52005530G>A	uc002abh.2	+	11	1616	c.1208G>A	c.(1207-1209)GGA>GAA	p.G403E	SCG3_uc010ufz.1_Missense_Mutation_p.G171E	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	403					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		CCTCTTCCAGGAAAAACAGAA	0.348													32	76					0	0	0.005524	0	0
MYO5C	55930	broad.mit.edu	37	15	52539151	52539151	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:52539151G>A	uc010bff.2	-	16	2079	c.1942C>T	c.(1942-1944)CGA>TGA	p.R648*	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	648	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TTGATGCATCGAACGTAGTGG	0.468													33	77					0	0	0.001706	0	0
UNC13C	440279	broad.mit.edu	37	15	54860035	54860035	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:54860035A>G	uc002ack.2	+	28	5996	c.5996A>G	c.(5995-5997)AAT>AGT	p.N1999S		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1999	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTGAAAAAGAATTTCTTGGAG	0.353													4	6					0	0	0.000602	0	0
PRTG	283659	broad.mit.edu	37	15	55931908	55931908	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:55931908G>A	uc002adg.2	-	13	2304	c.2256C>T	c.(2254-2256)ATC>ATT	p.I752I		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	752	Fibronectin type-III 4.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TGTAGTTAATGATTTGTGCAG	0.483													38	80					0	0	0.001485	0	0
GCOM1	145781	broad.mit.edu	37	15	57925814	57925814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:57925814G>A	uc002aei.2	+	8	927	c.808G>A	c.(808-810)GAA>AAA	p.E270K	GCOM1_uc002aej.2_Missense_Mutation_p.E270K|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.E270K|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.E270K|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	270	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						TTTGCAGGAAGAAACCAATAG	0.473													16	66					0	0	0.000958	0	0
PLEKHO2	80301	broad.mit.edu	37	15	65157377	65157377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:65157377G>A	uc002anv.2	+	6	897	c.763G>A	c.(763-765)GAC>AAC	p.D255N	PLEKHO2_uc010bgz.2_Intron|PLEKHO2_uc002anw.2_Missense_Mutation_p.D205N	NM_025201	NP_079477	Q8TD55	PKHO2_HUMAN	pleckstrin homology domain containing, family O	255	Pro-rich.									ovary(1)|lung(1)	2						AGCAGAGGAGGACAGTGGCTC	0.642													19	42					0	0	0.001216	0	0
MAP2K5	5607	broad.mit.edu	37	15	67878236	67878236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:67878236C>T	uc002aqu.2	+	5	984	c.331C>T	c.(331-333)CCT>TCT	p.P111S	MAP2K5_uc002aqt.1_Missense_Mutation_p.P111S|MAP2K5_uc002aqv.2_Missense_Mutation_p.P111S|MAP2K5_uc002aqw.2_5'UTR|MAP2K5_uc010ujw.1_Missense_Mutation_p.P75S	NM_145160	NP_660143	Q13163	MP2K5_HUMAN	mitogen-activated protein kinase kinase 5	111					nerve growth factor receptor signaling pathway		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)	2						AGCCTGCAAGCCTCCTGGGGA	0.373													12	59					0	0	0.001368	0	0
GLCE	26035	broad.mit.edu	37	15	69561544	69561544	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:69561544G>A	uc002ary.1	+	5	2043	c.1815G>A	c.(1813-1815)TGG>TGA	p.W605*		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	605	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						TCAAGAGGTGGAAAAGCTACC	0.483													39	78					0	0	0.001951	0	0
LRRC49	54839	broad.mit.edu	37	15	71196915	71196915	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:71196915C>T	uc002asw.2	+	5	568	c.321C>T	c.(319-321)ATC>ATT	p.I107I	LRRC49_uc002asu.2_Silent_p.I97I|LRRC49_uc002asx.2_Silent_p.I63I|LRRC49_uc010ukf.1_Silent_p.I112I|LRRC49_uc002asy.2_5'UTR|LRRC49_uc002asz.2_Silent_p.I79I	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	107						cytoplasm|microtubule				ovary(1)	1						TATGTCCTATCATCAATGGGG	0.308													22	41					0	0	0.002780	0	0
NEO1	4756	broad.mit.edu	37	15	73562426	73562426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:73562426C>T	uc002avm.3	+	17	2712	c.2570C>T	c.(2569-2571)CCA>CTA	p.P857L	NEO1_uc010ukx.1_Missense_Mutation_p.P857L|NEO1_uc010uky.1_Missense_Mutation_p.P857L|NEO1_uc010ukz.1_Missense_Mutation_p.P281L|NEO1_uc002avn.3_Missense_Mutation_p.P506L	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	857	Extracellular (Potential).|Fibronectin type-III 5.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						ATGATGCCACCAGTGGGAGTT	0.458													73	163					0	0	0.003610	0	0
TBC1D21	161514	broad.mit.edu	37	15	74173986	74173986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:74173986G>A	uc002avz.2	+	3	253	c.170G>A	c.(169-171)GGT>GAT	p.G57D	TBC1D21_uc010ulc.1_Missense_Mutation_p.G21D	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	57	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(2)	2						CCACCCCAGGGTCTGCACCCC	0.612													5	11					0	0	0.000602	0	0
CYP1A2	1544	broad.mit.edu	37	15	75042694	75042694	+	Silent	SNP	C	T	T	rs17861155	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:75042694C>T	uc002ayr.1	+	2	679	c.615C>T	c.(613-615)TTC>TTT	p.F205F		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	205					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	CCATGTGCTTCGGACAGCACT	0.572													69	119					0	0	0.003610	0	0
SIN3A	25942	broad.mit.edu	37	15	75664325	75664325	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:75664325G>T	uc002bai.2	-	21	4076	c.3817C>A	c.(3817-3819)CCT>ACT	p.P1273T	SIN3A_uc002baj.2_Missense_Mutation_p.P1273T|SIN3A_uc010uml.1_Missense_Mutation_p.P1273T	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	1273					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TGCAGTTAAGGGGCTTTGAAT	0.498													21	35					1.10513e-12	2.17076e-12	0.002299	1	0
HMG20A	10363	broad.mit.edu	37	15	77756592	77756592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:77756592C>T	uc002bcr.2	+	4	301	c.100C>T	c.(100-102)CCA>TCA	p.P34S	HMG20A_uc002bcq.1_Missense_Mutation_p.P34S|HMG20A_uc002bcs.2_Missense_Mutation_p.P34S	NM_018200	NP_060670	Q9NP66	HM20A_HUMAN	high-mobility group 20A	34					chromatin modification	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GTTAAATCACCCAGAGGTTCC	0.423													4	40					0	0	0.000602	0	0
CHRNB4	1143	broad.mit.edu	37	15	78923654	78923654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:78923654C>T	uc002bed.1	-	3	337	c.225G>A	c.(223-225)ATG>ATA	p.M75I	CHRNB4_uc002bee.1_Missense_Mutation_p.M75I|CHRNB4_uc010blh.1_5'UTR	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	75	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						CATTGGTGGTCATGATCTGCT	0.532													45	87					0	0	0.003610	0	0
FSD2	123722	broad.mit.edu	37	15	83456038	83456038	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:83456038G>A	uc002bjd.2	-	2	272	c.105C>T	c.(103-105)CTC>CTT	p.L35L	FSD2_uc010uol.1_Silent_p.L35L|FSD2_uc010uom.1_Silent_p.L35L	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	35										central_nervous_system(1)	1						CTTCTGGAAAGAGGTGCAGTC	0.502													51	76					0	0	0.003610	0	0
HDGFRP3	50810	broad.mit.edu	37	15	83820057	83820057	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:83820057T>C	uc002bjs.1	-	5	671	c.516A>G	c.(514-516)AAA>AAG	p.K172K		NM_016073	NP_057157	Q9Y3E1	HDGR3_HUMAN	hepatoma-derived growth factor, related protein	172					cell proliferation	nucleus	growth factor activity				0						TTTCCTCTTCTTTGCAGTCTT	0.408													27	59					0	0	0.001061	0	0
ZNF592	9640	broad.mit.edu	37	15	85326475	85326475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:85326475C>T	uc002bld.2	+	4	905	c.569C>T	c.(568-570)CCG>CTG	p.P190L	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	190					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GCTAAGTTTCCGGTTCCAGAG	0.547													51	87					0	0	0.003610	0	0
SLC28A1	9154	broad.mit.edu	37	15	85476404	85476404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:85476404C>T	uc002blg.2	+	13	1314	c.1112C>T	c.(1111-1113)TCT>TTT	p.S371F	SLC28A1_uc010bnb.2_Missense_Mutation_p.S371F|SLC28A1_uc010upe.1_Intron|SLC28A1_uc010upf.1_Missense_Mutation_p.S371F|SLC28A1_uc010upg.1_Missense_Mutation_p.S371F	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	371	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ATTGCAGCCTCTGTGATGGCT	0.567													62	108					0	0	0.003610	0	0
AGBL1	123624	broad.mit.edu	37	15	86807805	86807805	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:86807805G>A	uc002blz.1	+	10	1345	c.1265G>A	c.(1264-1266)TGG>TAG	p.W422*	AGBL1_uc002bma.1_Nonsense_Mutation_p.W153*|AGBL1_uc002bmb.1_Nonsense_Mutation_p.W116*	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	422					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						GCAGATGCCTGGGACGTAGAT	0.443													24	74					0	0	0.002780	0	0
ACAN	176	broad.mit.edu	37	15	89382240	89382240	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:89382240C>T	uc010upo.1	+	3	791	c.417C>T	c.(415-417)ATC>ATT	p.I139I	ACAN_uc002bmx.2_Silent_p.I139I|ACAN_uc010upp.1_Silent_p.I139I|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	139					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TGCATGGCATCGAGGACAGCG	0.612													25	70					0	0	0.003954	0	0
FANCI	55215	broad.mit.edu	37	15	89849247	89849247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:89849247C>T	uc010bnp.1	+	32	3449	c.3359C>T	c.(3358-3360)TCT>TTT	p.S1120F	FANCI_uc002bnm.1_Missense_Mutation_p.S1060F|FANCI_uc002bnn.1_Intron|FANCI_uc002bnp.1_Missense_Mutation_p.S880F|FANCI_uc002bnq.1_Missense_Mutation_p.S533F	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	1120					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					GAAGAGGCCTCTTCTCAGGCA	0.403								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				42	63					0	0	0.003610	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92981677	92981677	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr15:92981677C>T	uc002bra.2	+	4	540	c.385C>T	c.(385-387)CGA>TGA	p.R129*	ST8SIA2_uc002brb.2_Nonsense_Mutation_p.R108*	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	129	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			CATCTTCGATCGAGACAGCAC	0.468													69	117					0	0	0.003610	0	0
NARFL	64428	broad.mit.edu	37	16	789655	789655	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:789655G>A	uc002cjr.2	-	2	162	c.150C>T	c.(148-150)TTC>TTT	p.F50F	NARFL_uc002cjp.2_5'Flank|NARFL_uc002cjq.2_5'UTR|NARFL_uc002cjs.2_5'UTR|NARFL_uc010brc.1_Silent_p.F50F|NARFL_uc010uur.1_Silent_p.F50F	NM_022493	NP_071938	Q9H6Q4	NARFL_HUMAN	nuclear prelamin A recognition factor-like	50					iron-sulfur cluster assembly|oxygen homeostasis|regulation of transcription, DNA-dependent|response to hypoxia		4 iron, 4 sulfur cluster binding|metal ion binding				0		Hepatocellular(780;0.0218)				GGTTAATTTGGAAGTAGCTCC	0.537													52	78					0	0	0.003610	0	0
CACNA1H	8912	broad.mit.edu	37	16	1256116	1256116	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:1256116C>T	uc002cks.2	+	12	2864	c.2616C>T	c.(2614-2616)ATC>ATT	p.I872I	CACNA1H_uc002ckt.2_Silent_p.I872I	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	872	II.|Helical; Name=S3 of repeat II; (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TCTGGGAGATCGTGGGGCAGG	0.706													3	1					0	0	0.004672	0	0
TPSG1	25823	broad.mit.edu	37	16	1272781	1272781	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:1272781G>T	uc002ckw.2	-	4	384	c.382C>A	c.(382-384)CTG>ATG	p.L128M		NM_012467	NP_036599	Q9NRR2	TRYG1_HUMAN	transmembrane tryptase preproprotein	128	Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				AGCTCCACCAGGGCGATGTCC	0.657													7	17					5.4927e-09	1.07405e-08	0.004482	1	0
CLCN7	1186	broad.mit.edu	37	16	1500599	1500599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:1500599C>T	uc002clv.2	-	17	1626	c.1516G>A	c.(1516-1518)GGG>AGG	p.G506R	CLCN7_uc010brq.1_5'Flank|CLCN7_uc002clu.2_5'Flank|CLCN7_uc002clw.2_Missense_Mutation_p.G482R	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	506	Helical; (By similarity).					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				ACCGTGAGCCCGTAGGTCCAG	0.667													10	18					0	0	0.000673	0	0
PTX4	390667	broad.mit.edu	37	16	1535943	1535943	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:1535943G>A	uc010uvf.1	-	3	1419	c.1419C>T	c.(1417-1419)CCC>CCT	p.P473P		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	478						extracellular region	metal ion binding				0						CTCGGCCTCAGGGACAGCGTT	0.657													4	11					0	0	0.000602	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1779566	1779566	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:1779566C>T	uc002cmk.2	+	4	709	c.589C>T	c.(589-591)CTG>TTG	p.L197L	MAPK8IP3_uc002cmi.1_Silent_p.L197L|MAPK8IP3_uc002cmj.1_RNA|MAPK8IP3_uc002cml.2_Silent_p.L197L|MAPK8IP3_uc010uvl.1_Silent_p.L197L	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	197					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						CGAGAGCAGCCTGCcggggcg	0.363													6	13					0	0	0.001984	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1798340	1798340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:1798340G>A	uc002cmk.2	+	7	1207	c.1087G>A	c.(1087-1089)GGA>AGA	p.G363R	MAPK8IP3_uc002cml.2_Missense_Mutation_p.G363R|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.G364R	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	363					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						GGACCGCACAGGAAGCAGGTA	0.582													11	20					0	0	0.000978	0	0
MEFV	4210	broad.mit.edu	37	16	3304748	3304748	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:3304748G>T	uc002cun.1	-	2	360	c.320C>A	c.(319-321)TCC>TAC	p.S107Y		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	107					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CAGGGAGCTGGACGCTGCGGA	0.592													6	102					1.12685e-05	2.1985e-05	0.004482	1	0
BTBD12	84464	broad.mit.edu	37	16	3640461	3640461	+	Missense_Mutation	SNP	G	A	A	rs144273492	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:3640461G>A	uc002cvp.2	-	12	3805	c.3178C>T	c.(3178-3180)CGG>TGG	p.R1060W		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1060	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CCACGGGACCGGGGTGTTGAC	0.637								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				46	84					0	0	0.003610	0	0
CREBBP	1387	broad.mit.edu	37	16	3778043	3778043	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:3778043G>A	uc002cvv.2	-	31	7209	c.7005C>T	c.(7003-7005)ATC>ATT	p.I2335I	CREBBP_uc002cvw.2_Silent_p.I2297I	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	2335					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GGGACGTGGCGATCTGCTGGC	0.647			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				39	82					0	0	0.005524	0	0
SRL	6345	broad.mit.edu	37	16	4242630	4242630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:4242630C>T	uc002cvz.3	-	6	959	c.946G>A	c.(946-948)GAA>AAA	p.E316K	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	775						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						TTCAGGTCTTCTAGGAGGGAG	0.562													50	115					0	0	0.003610	0	0
MGRN1	23295	broad.mit.edu	37	16	4723511	4723511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:4723511G>A	uc002cwz.2	+	10	944	c.808G>A	c.(808-810)GAG>AAG	p.E270K	MGRN1_uc002cxa.2_Missense_Mutation_p.E270K|MGRN1_uc010btx.2_Missense_Mutation_p.E271K|MGRN1_uc010btw.2_Missense_Mutation_p.E271K|MGRN1_uc002cxb.2_Missense_Mutation_p.E309K|MGRN1_uc010uxo.1_Missense_Mutation_p.E270K|MGRN1_uc010uxp.1_Missense_Mutation_p.E270K|MGRN1_uc010uxq.1_RNA	NM_001142290	NP_001135762	O60291	MGRN1_HUMAN	mahogunin, ring finger 1 isoform 3	270					endosome to lysosome transport|negative regulation of cAMP-mediated signaling|negative regulation of G-protein coupled receptor protein signaling pathway|protein monoubiquitination	cytosol|early endosome|nucleus|plasma membrane|plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2						CTCGGACGACGAGAACAGCGA	0.657													64	172					0	0	0.003610	0	0
UBN1	29855	broad.mit.edu	37	16	4927076	4927076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:4927076C>T	uc002cyb.2	+	16	3568	c.3229C>T	c.(3229-3231)CCT>TCT	p.P1077S	UBN1_uc010uxw.1_Missense_Mutation_p.P1077S|UBN1_uc002cyc.2_Missense_Mutation_p.P1077S	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	1077					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CGTCACAGGCCCTGCCCCCGG	0.582													86	122					0	0	0.003610	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858202	9858202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:9858202G>A	uc002czo.3	-	13	3747	c.3199C>T	c.(3199-3201)CGG>TGG	p.R1067W	GRIN2A_uc010uym.1_Missense_Mutation_p.R1067W|GRIN2A_uc010uyn.1_Missense_Mutation_p.R910W|GRIN2A_uc002czr.3_Missense_Mutation_p.R1067W	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1067	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CACGTGGCCCGATTTGACGTT	0.498													66	93					0	0	0.003610	0	0
CPPED1	55313	broad.mit.edu	37	16	12758853	12758853	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:12758853G>A	uc002dca.3	-	4	946	c.835C>T	c.(835-837)CGA>TGA	p.R279*	CPPED1_uc002dcb.3_Nonsense_Mutation_p.R137*|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	279							hydrolase activity|metal ion binding				0						ACCACGACTCGGAGCCCGTGG	0.537													38	49					0	0	0.005524	0	0
MYH11	4629	broad.mit.edu	37	16	15818255	15818255	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:15818255C>T	uc002ddy.2	-	31	4235	c.4128G>A	c.(4126-4128)TCG>TCA	p.S1376S	MYH11_uc002ddv.2_Silent_p.S1383S|MYH11_uc002ddw.2_Silent_p.S1376S|MYH11_uc002ddx.2_Silent_p.S1383S|MYH11_uc010bvg.2_Silent_p.S1208S|NDE1_uc010uzy.1_3'UTR|NDE1_uc002dds.2_3'UTR|MYH11_uc010bvh.2_Silent_p.S82S|NDE1_uc002ddz.1_RNA	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1376	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCTTCTTCTTCGAGTCGGAGA	0.587			T	CBFB	AML								19	54					0	0	0.002780	0	0
ABCC6	368	broad.mit.edu	37	16	16282697	16282697	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:16282697G>A	uc002den.3	-	13	1807	c.1770C>T	c.(1768-1770)TCC>TCT	p.S590S	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Silent_p.S602S	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	590	ABC transmembrane type-1 1.|Helical; Name=11; (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CCTGGACGAGGGAGTGGATGG	0.577													10	17					0	0	0.000673	0	0
TMC5	79838	broad.mit.edu	37	16	19455440	19455440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:19455440C>T	uc002dgc.3	+	4	1575	c.826C>T	c.(826-828)CGT>TGT	p.R276C	TMC5_uc010vaq.1_Missense_Mutation_p.R276C|TMC5_uc002dgb.3_Missense_Mutation_p.R276C|TMC5_uc010var.1_Missense_Mutation_p.R276C	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	276	Extracellular (Potential).					integral to membrane				skin(1)	1						GCCCTCATTTCGTCACAGGAG	0.438													35	67					0	0	0.004878	0	0
ACSM2B	348158	broad.mit.edu	37	16	20563612	20563612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:20563612C>T	uc002dhj.3	-	7	958	c.748G>A	c.(748-750)GGC>AGC	p.G250S	ACSM2B_uc002dhk.3_Missense_Mutation_p.G250S|ACSM2B_uc010bwf.1_Missense_Mutation_p.G250S	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	250					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GCTTGCAGGCCTGTCCAACTG	0.473													18	46					0	0	0.002780	0	0
DNAH3	55567	broad.mit.edu	37	16	21061243	21061243	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:21061243G>A	uc010vbe.1	-	30	4335	c.4335C>T	c.(4333-4335)GCC>GCT	p.A1445A		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1445	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCTTAGCCAAGGCTTTGGCCA	0.532													41	100					0	0	0.002852	0	0
DNAH3	55567	broad.mit.edu	37	16	21136549	21136549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:21136549C>T	uc010vbe.1	-	9	1351	c.1351G>A	c.(1351-1353)GAG>AAG	p.E451K	DNAH3_uc002die.2_Missense_Mutation_p.E422K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	451	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATGACCAGCTCCCTAAGCTGC	0.448													54	68					0	0	0.003610	0	0
ANKS4B	257629	broad.mit.edu	37	16	21245187	21245187	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:21245187G>A	uc010bwp.1	+	1	172	c.129G>A	c.(127-129)GGG>GGA	p.G43G		NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	43	ANK 1.									ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		CCTACCATGGGAACTTGGAAG	0.463													47	77					0	0	0.003610	0	0
METTL9	51108	broad.mit.edu	37	16	21666636	21666636	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:21666636C>T	uc002dje.2	+	5	1039	c.840C>T	c.(838-840)TTC>TTT	p.F280F	uc002diq.3_Intron|METTL9_uc002djf.2_Silent_p.F279F|IGSF6_uc002djg.1_5'Flank|IGSF6_uc010vbi.1_5'Flank	NM_016025	NP_057109	Q9H1A3	METL9_HUMAN	methyltransferase like 9 isoform 1	280										ovary(1)	1				GBM - Glioblastoma multiforme(48;0.0759)		CTGAAGTTTTCAGAAAAGCTG	0.408													16	39					0	0	0.004007	0	0
OTOA	146183	broad.mit.edu	37	16	21693134	21693134	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:21693134C>T	uc002djh.2	+	5	256	c.255C>T	c.(253-255)ATC>ATT	p.I85I	uc002diq.3_Intron|OTOA_uc010vbj.1_5'Flank	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	85					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		CCTTCACCATCCCCAGCCTGC	0.537													18	29					0	0	0.001523	0	0
OTOA	146183	broad.mit.edu	37	16	21721277	21721277	+	Silent	SNP	G	A	A	rs143326637	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:21721277G>A	uc002djh.2	+	12	1174	c.1173G>A	c.(1171-1173)TCG>TCA	p.S391S	uc002diq.3_Intron|OTOA_uc010vbj.1_Silent_p.S312S|OTOA_uc002dji.2_Silent_p.S67S|OTOA_uc010vbk.1_Silent_p.S39S	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	405					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GTTCTTTGTCGGATGCAGTTG	0.547													24	37					0	0	0.005443	0	0
USP31	57478	broad.mit.edu	37	16	23080546	23080546	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:23080546G>A	uc002dll.2	-	16	2880	c.2880C>T	c.(2878-2880)TCC>TCT	p.S960S	USP31_uc002dlk.2_Silent_p.S232S|USP31_uc010vca.1_Silent_p.S263S|USP31_uc010bxm.2_Silent_p.S248S	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	960	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		CTACGACACTGGAGTTCAATC	0.542													31	83					0	0	0.002445	0	0
SCNN1G	6340	broad.mit.edu	37	16	23224185	23224185	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:23224185C>T	uc002dlm.1	+	10	1540	c.1401C>T	c.(1399-1401)AGC>AGT	p.S467S		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	467	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TAACCACAAGCCTGGCACAAT	0.577													27	35					0	0	0.004656	0	0
CACNG3	10368	broad.mit.edu	37	16	24373007	24373007	+	Silent	SNP	C	T	T	rs144805488		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:24373007C>T	uc002dmf.2	+	4	1971	c.771C>T	c.(769-771)ATC>ATT	p.I257I		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	257					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TCCACACCATCCCTTCCACTG	0.592													26	54					0	0	0.004656	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25258337	25258337	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:25258337G>A	uc002dod.3	-	5	1587	c.1180C>T	c.(1180-1182)CGA>TGA	p.R394*	ZKSCAN2_uc010vcl.1_Nonsense_Mutation_p.R190*|ZKSCAN2_uc002doe.2_Nonsense_Mutation_p.R394*	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	394					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		AACTTGGTTCGACACTGTTCT	0.473													68	103					0	0	0.003610	0	0
IL21R	50615	broad.mit.edu	37	16	27445682	27445682	+	Missense_Mutation	SNP	G	A	A	rs149169230		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:27445682G>A	uc002doq.1	+	3	297	c.64G>A	c.(64-66)GAC>AAC	p.D22N	IL21R_uc002dor.1_Missense_Mutation_p.D22N|IL21R_uc002dos.1_Missense_Mutation_p.D22N	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	22	Extracellular (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						GGGCTGCCCCGACCTCGTCTG	0.632			T	BCL6	NHL								15	27					0	0	0.004990	0	0
GTF3C1	2975	broad.mit.edu	37	16	27476020	27476020	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:27476020G>A	uc002dov.1	-	34	5533	c.5493C>T	c.(5491-5493)GAC>GAT	p.D1831D	GTF3C1_uc002dou.2_Silent_p.D1831D	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1831						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TGGCCTGGGGGTCTTCTCTCT	0.677													31	49					0	0	0.002096	0	0
ATXN2L	11273	broad.mit.edu	37	16	28841376	28841376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:28841376C>T	uc002drc.2	+	8	1199	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F	uc010vct.1_Intron|ATXN2L_uc010byl.1_Missense_Mutation_p.S344F|ATXN2L_uc002drb.2_Missense_Mutation_p.S344F|ATXN2L_uc002dqy.2_Missense_Mutation_p.S344F|ATXN2L_uc002dra.2_Missense_Mutation_p.S344F|ATXN2L_uc002dqz.2_Missense_Mutation_p.S344F|ATXN2L_uc010vdb.1_Missense_Mutation_p.S344F|ATXN2L_uc002dre.2_Missense_Mutation_p.S344F|ATXN2L_uc002drf.2_5'UTR	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	344						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						AGCTTGGCATCCAGGTGACTG	0.597													3	14					0	0	0.004672	0	0
ATP2A1	487	broad.mit.edu	37	16	28898962	28898962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:28898962G>A	uc002dro.1	+	8	1031	c.847G>A	c.(847-849)GTC>ATC	p.V283I	uc010vct.1_Intron|ATP2A1_uc002drn.1_Missense_Mutation_p.V283I|ATP2A1_uc002drp.1_Missense_Mutation_p.V158I|ATP2A1_uc010bym.1_5'Flank	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	283	Lumenal (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAACGACCCCGTCCATGGGGG	0.557													12	101					0	0	0.000978	0	0
SRCAP	10847	broad.mit.edu	37	16	30733927	30733927	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:30733927C>T	uc002dze.1	+	23	4135	c.3750C>T	c.(3748-3750)CTC>CTT	p.L1250L	SRCAP_uc002dzf.2_Intron|SRCAP_uc002dzg.1_Intron|SRCAP_uc010bzz.1_Silent_p.L820L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1250	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AGCACCATCTCATCAGCCAGC	0.632													52	76					0	0	0.003610	0	0
ZNF668	79759	broad.mit.edu	37	16	31073569	31073569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:31073569G>A	uc010caf.2	-	3	1037	c.680C>T	c.(679-681)TCC>TTC	p.S227F	ZNF668_uc002eao.2_Missense_Mutation_p.S227F	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	227	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						CCCGCACTCGGAGCAGAGGAA	0.682													21	45					0	0	0.004656	0	0
TRIM72	493829	broad.mit.edu	37	16	31234238	31234238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:31234238G>A	uc002ebn.1	+	6	1060	c.831G>A	c.(829-831)TGG>TGA	p.W277*	uc002ebp.1_5'Flank	NM_001008274	NP_001008275	Q6ZMU5	TRI72_HUMAN	tripartite motif-containing 72	277	B30.2/SPRY.				exocytosis|muscle organ development|muscle system process|plasma membrane repair|protein homooligomerization	cytoplasmic vesicle membrane|sarcolemma	phosphatidylserine binding|zinc ion binding				0						TCCAGGTGTGGAGGAAGATGT	0.597													47	87					0	0	0.003610	0	0
ITGAX	3687	broad.mit.edu	37	16	31374393	31374393	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:31374393G>A	uc002ebu.1	+	13	1564	c.1497G>A	c.(1495-1497)AGG>AGA	p.R499R	ITGAX_uc002ebt.2_Silent_p.R499R|ITGAX_uc010vfk.1_Silent_p.R149R	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	499	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCTTGCCCAGGGGGGTGAGTG	0.657													22	28					0	0	0.005443	0	0
ARMC5	79798	broad.mit.edu	37	16	31471177	31471177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:31471177C>T	uc002ecc.2	+	1	861	c.332C>T	c.(331-333)CCC>CTC	p.P111L	ARMC5_uc010vfn.1_Missense_Mutation_p.P206L|ARMC5_uc010vfo.1_Missense_Mutation_p.P143L|ARMC5_uc002eca.3_Missense_Mutation_p.P111L|ARMC5_uc010vfp.1_Missense_Mutation_p.P111L|ARMC5_uc002ecb.2_Missense_Mutation_p.P111L	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	111							binding			pancreas(1)	1						ggccccgcccccTCCGCTGTG	0.602													3	7					0	0	0.004672	0	0
C16orf58	64755	broad.mit.edu	37	16	31508266	31508266	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:31508266G>A	uc002eci.1	-	6	618	c.606C>T	c.(604-606)ATC>ATT	p.I202I	C16orf58_uc010vfq.1_Silent_p.I60I	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	202						integral to membrane				ovary(1)|breast(1)	2						CAACACTCACGATGCACTGGG	0.617													9	16					0	0	0.001368	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404044	34404044	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:34404044G>A	uc002edv.1	-	1		c.719C>T				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						CCGTGGCGGGGGTGGGTATGC	0.637													9	10					0	0	0.000443	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404367	34404367	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:34404367C>T	uc002edv.1	-	1		c.396G>A				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						TAACCCTGGCCCACCTTAAAA	0.507													26	46					0	0	0.001271	0	0
MYLK3	91807	broad.mit.edu	37	16	46771906	46771906	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:46771906G>A	uc002eei.3	-	3	834	c.718C>T	c.(718-720)CTG>TTG	p.L240L	MYLK3_uc010vge.1_Intron|MYLK3_uc002eej.1_5'UTR	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	240					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				GGCAGGGGCAGGTGGCCAGGG	0.657													8	21					0	0	0.004482	0	0
ZNF423	23090	broad.mit.edu	37	16	49671166	49671166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:49671166G>A	uc002efs.2	-	5	2195	c.1897C>T	c.(1897-1899)CCT>TCT	p.P633S	ZNF423_uc010vgn.1_Missense_Mutation_p.P516S	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	633	C2H2-type 14.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TGATTGCAAGGATACTCCCCA	0.597													23	50					0	0	0.004656	0	0
ADCY7	113	broad.mit.edu	37	16	50347965	50347965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:50347965G>A	uc002egd.1	+	22	3116	c.2848G>A	c.(2848-2850)GAG>AAG	p.E950K		NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	950	Cytoplasmic (Potential).|Guanylate cyclase 2.				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	CTCAGGGCACGAGAACCAGGT	0.552													12	26					0	0	0.001368	0	0
NOD2	64127	broad.mit.edu	37	16	50733553	50733553	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:50733553C>T	uc002egm.1	+	2	333	c.228C>T	c.(226-228)CTC>CTT	p.L76L	NOD2_uc010cbj.1_Silent_p.L49L|NOD2_uc010cbk.1_Silent_p.L49L|NOD2_uc002egl.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	76	CARD 1.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GCTTCCACCTCCTGGGCCAGC	0.627													24	58					0	0	0.003330	0	0
SALL1	6299	broad.mit.edu	37	16	51175015	51175015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:51175015G>A	uc010vgs.1	-	2	1149	c.1118C>T	c.(1117-1119)TCG>TTG	p.S373L	SALL1_uc010vgr.1_Missense_Mutation_p.S276L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	373	Poly-Ser.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGGTGAGGACGATGATGAGAC	0.512													29	58					0	0	0.001061	0	0
SALL1	6299	broad.mit.edu	37	16	51175780	51175780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:51175780C>T	uc010vgs.1	-	2	384	c.353G>A	c.(352-354)GGA>GAA	p.G118E	SALL1_uc010vgr.1_Missense_Mutation_p.G21E|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	118					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CCTGTCAAGTCCGTTGTGTTC	0.532													47	81					0	0	0.003610	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53679563	53679563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:53679563G>A	uc002ehp.2	-	17	2721	c.2657C>T	c.(2656-2658)TCG>TTG	p.S886L	RPGRIP1L_uc002eho.3_Missense_Mutation_p.S886L|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.S886L|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.S886L|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.S886L	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	886					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ATGTGCCAACGAAATCAGAGG	0.328													134	231					0	0	0.003610	0	0
SLC6A2	6530	broad.mit.edu	37	16	55725938	55725938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:55725938G>A	uc002eif.2	+	6	1003	c.892G>A	c.(892-894)GAC>AAC	p.D298N	SLC6A2_uc010ccd.2_Missense_Mutation_p.D298N|SLC6A2_uc002eig.2_Missense_Mutation_p.D298N|SLC6A2_uc002eih.2_Missense_Mutation_p.D298N|SLC6A2_uc002eii.2_Missense_Mutation_p.D193N|SLC6A2_uc002eij.2_Intron	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	298					synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	CCTGCACATCGACTTCTACCG	0.572													27	54					0	0	0.001512	0	0
CES1	1066	broad.mit.edu	37	16	55855416	55855416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:55855416C>T	uc002eim.2	-	5	662	c.554G>A	c.(553-555)AGC>AAC	p.S185N	CES1_uc002eil.2_Missense_Mutation_p.S186N|CES1_uc002ein.2_Missense_Mutation_p.S185N	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	185					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	GTTCCCCCGGCTGTGTTCATC	0.597													10	19					0	0	0.001368	0	0
AMFR	267	broad.mit.edu	37	16	56397846	56397846	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:56397846G>A	uc002eiy.2	-	13	1976	c.1771C>T	c.(1771-1773)CAG>TAG	p.Q591*	AMFR_uc002eiw.2_RNA|AMFR_uc002eix.2_Nonsense_Mutation_p.Q225*	NM_001144	NP_001135	Q9UKV5	AMFR2_HUMAN	autocrine motility factor receptor	591					endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|protein oligomerization|protein polyubiquitination	integral to endoplasmic reticulum membrane|integral to membrane of membrane fraction	protein binding|protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			breast(2)	2						CGAGCTTGCTGGAGGAGTTCG	0.547													11	31					0	0	0.000978	0	0
CNGB1	1258	broad.mit.edu	37	16	57931750	57931750	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:57931750C>T	uc002emt.2	-	30	3110	c.3045G>A	c.(3043-3045)GGG>GGA	p.G1015G	CNGB1_uc010cdh.2_Silent_p.G1009G	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	1015	Cytoplasmic (Potential).|cAMP (By similarity).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GCACAGATTTCCCATCAGGGC	0.557													68	153					0	0	0.003610	0	0
MMP15	4324	broad.mit.edu	37	16	58079018	58079018	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:58079018C>T	uc002ena.2	+	10	2651	c.1678C>T	c.(1678-1680)CAG>TAG	p.Q560*		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	560	Extracellular (Potential).				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						CATGGGCTGCCAGGAGCACGT	0.672													5	6					0	0	0.000602	0	0
CDH5	1003	broad.mit.edu	37	16	66431897	66431897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:66431897G>A	uc002eom.3	+	9	1529	c.1373G>A	c.(1372-1374)GGA>GAA	p.G458E		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	458	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		ACCCCCACAGGAAAAGAATCC	0.537													35	86					0	0	0.001485	0	0
CES3	23491	broad.mit.edu	37	16	67006379	67006379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:67006379C>T	uc002eqt.2	+	11	1485	c.1412C>T	c.(1411-1413)CCC>CTC	p.P471L	CES3_uc010cdz.2_Missense_Mutation_p.P471L|CES3_uc010cea.2_RNA|CES3_uc010viw.1_Missense_Mutation_p.P110L	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	471						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		TTCGGAGGTCCCTTCCTCATG	0.582													39	91					0	0	0.001706	0	0
EXOC3L	283849	broad.mit.edu	37	16	67222706	67222706	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:67222706C>T	uc002erx.1	-	4	586	c.345G>A	c.(343-345)CAG>CAA	p.Q115Q	EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_Intron|EXOC3L_uc002ery.1_Intron|EXOC3L_uc010vje.1_Intron	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	115	Mediates interaction with EXOC2, EXOC4 and EXOC5 (By similarity).				exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		GCTCTAGAGTCTGTAAGGCCT	0.677													25	29					0	0	0.003954	0	0
ACD	65057	broad.mit.edu	37	16	67694047	67694047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:67694047G>A	uc002etq.3	-	1	672	c.335C>T	c.(334-336)CCA>CTA	p.P112L	ACD_uc002etp.3_Missense_Mutation_p.P112L|ACD_uc002etr.3_Missense_Mutation_p.P112L|ACD_uc010vjt.1_Missense_Mutation_p.P102L|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	112					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CCCGGCTCGTGGACTGGAGGG	0.692													16	28					0	0	0.004007	0	0
ESRP2	80004	broad.mit.edu	37	16	68265548	68265548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:68265548G>A	uc010cfa.1	-	11	1567	c.1379C>T	c.(1378-1380)CCA>CTA	p.P460L	ESRP2_uc002evp.1_RNA|ESRP2_uc002evq.1_Missense_Mutation_p.P450L	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B	460					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						GGGCAGCAGTGGGGCAGTCAG	0.612													6	23					0	0	0.004482	0	0
ZNF19	7567	broad.mit.edu	37	16	71509172	71509173	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:71509172_71509173GG>TT	uc010cgc.1	-	6	1783_1784	c.1277_1278CC>AA	c.(1276-1278)TCC>TAA	p.S426*	ZNF23_uc002fai.2_Intron|ZNF19_uc002fak.1_Nonsense_Mutation_p.S414*|ZNF19_uc002fal.1_Nonsense_Mutation_p.S414*|ZNF19_uc002fam.1_Nonsense_Mutation_p.S426*	NM_006961	NP_008892	P17023	ZNF19_HUMAN	zinc finger protein 19	426	C2H2-type 10; atypical.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(137;0.00965)		BRCA - Breast invasive adenocarcinoma(221;0.0161)|Kidney(780;0.0598)		GACCTAGCTGGGAAGAAGTCCC	0.327													11	41					0	0	0.004672	0	0
CHST4	10164	broad.mit.edu	37	16	71570936	71570936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:71570936G>A	uc002fan.2	+	2	537	c.356G>A	c.(355-357)AGA>AAA	p.R119K	CHST4_uc002fao.2_Missense_Mutation_p.R119K	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	119	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						GGTCCCCGGAGACAGTCCAGC	0.587													22	51					0	0	0.003330	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77356242	77356242	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:77356242C>T	uc002ffc.3	-	14	2573	c.2154G>A	c.(2152-2154)GGG>GGA	p.G718G	ADAMTS18_uc010chc.1_Silent_p.G306G|ADAMTS18_uc002ffe.1_Silent_p.G414G	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	718	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CTTCACAAACCCCGTCAATAC	0.418													22	56					0	0	0.002780	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77389870	77389870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:77389870G>A	uc002ffc.3	-	9	1846	c.1427C>T	c.(1426-1428)TCC>TTC	p.S476F	ADAMTS18_uc010chc.1_Missense_Mutation_p.S64F|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S172F|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	476	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GCGGCTGCAGGAAGACCATGA	0.483													15	57					0	0	0.004007	0	0
VAT1L	57687	broad.mit.edu	37	16	77910297	77910297	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:77910297G>A	uc002ffg.1	+	5	850	c.753G>A	c.(751-753)TTG>TTA	p.L251L		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	251							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						ACATCGTTTTGGATTGCCTCT	0.473													40	87					0	0	0.003214	0	0
VAT1L	57687	broad.mit.edu	37	16	77918642	77918642	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:77918642G>A	uc002ffg.1	+	7	1117	c.1020G>A	c.(1018-1020)GGG>GGA	p.G340G		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	340							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						AACTCATAGGGCTCTACAACC	0.483													9	16					0	0	0.000443	0	0
CDYL2	124359	broad.mit.edu	37	16	80718436	80718436	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:80718436G>A	uc002ffs.2	-	2	720	c.615C>T	c.(613-615)CTC>CTT	p.L205L		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	205						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						GCTACAAACCGAGCCCGTTCT	0.527													27	41					0	0	0.001786	0	0
ATMIN	23300	broad.mit.edu	37	16	81077961	81077961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:81077961C>T	uc002ffz.1	+	4	1876	c.1858C>T	c.(1858-1860)CCT>TCT	p.P620S	ATMIN_uc002fga.2_Missense_Mutation_p.P462S|ATMIN_uc010vnn.1_Missense_Mutation_p.P391S|ATMIN_uc002fgb.1_Missense_Mutation_p.P462S	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	620					response to DNA damage stimulus	nucleus	zinc ion binding				0						AAATCCTGGACCTGACACCCA	0.438													15	26					0	0	0.004007	0	0
PKD1L2	114780	broad.mit.edu	37	16	81181949	81181949	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:81181949G>A	uc002fgh.1	-	29	4767	c.4767C>T	c.(4765-4767)TTC>TTT	p.F1589F	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1589	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCTGCCAGGTGAATTCAATTT	0.572													17	50					0	0	0.000958	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033001	82033001	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:82033001G>A	uc002fgu.2	-	3	1025	c.897C>T	c.(895-897)TTC>TTT	p.F299F		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	299	Helical; (Potential).				steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GACCCAAAATGAAGTGAACCA	0.483													23	51					0	0	0.001882	0	0
CDH13	1012	broad.mit.edu	37	16	83704458	83704458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:83704458G>A	uc002fgx.2	+	9	1285	c.1165G>A	c.(1165-1167)GAT>AAT	p.D389N	CDH13_uc010vns.1_Missense_Mutation_p.D436N|CDH13_uc010vnt.1_Missense_Mutation_p.D135N|CDH13_uc010vnu.1_Missense_Mutation_p.D350N	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	389	Cadherin 3.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TGAAGATAAGGATGACCCCAC	0.488													19	49					0	0	0.001216	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84900627	84900627	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:84900627C>T	uc010voh.1	+	7	1061	c.834C>T	c.(832-834)ACC>ACT	p.T278T	CRISPLD2_uc010vog.1_Intron|CRISPLD2_uc002fio.2_Silent_p.T277T|CRISPLD2_uc002fim.2_Silent_p.T278T|CRISPLD2_uc002fin.3_Silent_p.T278T	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	278						extracellular region|transport vesicle					0						CCAAGAAAACCTCTGCGGTCA	0.587													12	28					0	0	0.000978	0	0
CDH15	1013	broad.mit.edu	37	16	89249980	89249980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:89249980G>A	uc002fmt.2	+	4	459	c.382G>A	c.(382-384)GGA>AGA	p.G128R	CDH15_uc010cij.1_Missense_Mutation_p.G128R	NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	128	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		CCTGGACCTGGGAGGATCCAC	0.587													15	33					0	0	0.000958	0	0
ANKRD11	29123	broad.mit.edu	37	16	89350734	89350734	+	Missense_Mutation	SNP	G	A	A	rs146294483		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:89350734G>A	uc002fmx.1	-	9	2677	c.2216C>T	c.(2215-2217)TCG>TTG	p.S739L	ANKRD11_uc002fmy.1_Missense_Mutation_p.S739L|ANKRD11_uc002fnc.1_Missense_Mutation_p.S739L|ANKRD11_uc002fnb.1_Missense_Mutation_p.S696L	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	739	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TGCTTTATTCGAACGGTCTTT	0.388													35	67					0	0	0.003755	0	0
SPG7	6687	broad.mit.edu	37	16	89590484	89590484	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:89590484G>A	uc002fnj.2	+	4	468	c.447G>A	c.(445-447)GCG>GCA	p.A149A	SPG7_uc002fni.2_Silent_p.A149A	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	149	Helical; (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		TGGTCATCGCGGTTGTCATGA	0.612													17	52					0	0	0.004990	0	0
DBNDD1	79007	broad.mit.edu	37	16	90075245	90075245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:90075245G>A	uc002fqf.1	-	3	454	c.266C>T	c.(265-267)GCC>GTC	p.A89V	DBNDD1_uc002fqe.1_Missense_Mutation_p.A109V|DBNDD1_uc002fqg.1_RNA	NM_001042610	NP_001036075	Q9H9R9	DBND1_HUMAN	dysbindin (dystrobrevin binding protein 1)	89						cytoplasm					0		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0275)		AAAGACCTCGGCCAGCTCCTG	0.647													12	16					0	0	0.001855	0	0
GAS8	2622	broad.mit.edu	37	16	90097793	90097793	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:90097793C>T	uc002fqi.1	+	3	299	c.177C>T	c.(175-177)ATC>ATT	p.I59I	GAS8_uc010vps.1_Silent_p.I34I|GAS8_uc002fqh.2_5'UTR|GAS8_uc010vpt.1_Silent_p.I59I|GAS8_uc010vpu.1_5'UTR|GAS8_uc010vpv.1_Silent_p.I30I|GAS8_uc010cjc.1_5'UTR|GAS8_uc010vpw.1_5'UTR|GAS8_uc002fqj.1_5'UTR|C16orf3_uc002fqk.1_5'Flank	NM_001481	NP_001472	O95995	GAS8_HUMAN	growth arrest-specific 8	59	Regulates microtubule-binding (By similarity).				negative regulation of cell proliferation|sperm motility	cilium|Golgi apparatus|microtubule|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.029)		GGGACAAGATCCACACCTTCT	0.622													21	28					0	0	0.002780	0	0
PRPF8	10594	broad.mit.edu	37	17	1555054	1555054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:1555054G>A	uc002fte.2	-	40	6512	c.6398C>T	c.(6397-6399)CCA>CTA	p.P2133L	RILP_uc002ftd.2_5'Flank	NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	2133	MPN.					catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		GTTATCTGGTGGGCTCACCCC	0.577													54	46					0	0	0.003610	0	0
SERPINF2	5345	broad.mit.edu	37	17	1650749	1650749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:1650749C>T	uc002ftk.1	+	7	735	c.658C>T	c.(658-660)CTC>TTC	p.L220F	SERPINF2_uc010vqr.1_Missense_Mutation_p.L156F	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	220					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	TCAGGAATTCCTCTCTGGGCT	0.592													17	21					0	0	0.001523	0	0
LOC284009	284009	broad.mit.edu	37	17	2317704	2317704	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:2317704G>A	uc002fus.2	-	2	311	c.232C>T	c.(232-234)CCA>TCA	p.P78S		NM_001025459	NP_001020630			SubName: Full=Putative uncharacterized protein LOC284009;												0						gcaaggaatggaactggacgg	0.179													25	33					0	0	0.001061	0	0
OR1D2	4991	broad.mit.edu	37	17	2995854	2995854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:2995854G>A	uc010vrb.1	-	1	437	c.437C>T	c.(436-438)TCC>TTC	p.S146F		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	146	Helical; Name=4; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						CCAACACAAGGAAAGGAGTAA	0.522													14	17					0	0	0.002450	0	0
OR3A1	4994	broad.mit.edu	37	17	3195632	3195632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:3195632G>A	uc002fvh.1	-	1	245	c.245C>T	c.(244-246)CCA>CTA	p.P82L		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	82	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						CAACATTGATGGAACAGTGAC	0.562													15	22					0	0	0.004007	0	0
UBE2G1	7326	broad.mit.edu	37	17	4192609	4192609	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:4192609G>A	uc002fxs.2	-	4	700	c.342C>T	c.(340-342)ATC>ATT	p.I114I		NM_003342	NP_003333	P62253	UB2G1_HUMAN	ubiquitin-conjugating enzyme E2G 1	114					protein K48-linked ubiquitination|protein K63-linked ubiquitination|ubiquitin-dependent protein catabolic process		ATP binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity				0						CCACAGTGTGGATAGGGAGCC	0.453													5	80					0	0	0.000602	0	0
ALOX15	246	broad.mit.edu	37	17	4540538	4540538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:4540538C>T	uc002fyh.2	-	7	837	c.823G>A	c.(823-825)GAA>AAA	p.E275K	ALOX15_uc010vsd.1_Missense_Mutation_p.E236K|ALOX15_uc010vse.1_Missense_Mutation_p.E297K	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	275	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	AAGTCAGCTTCGAACAGTGTG	0.532													19	17					0	0	0.001523	0	0
PELP1	27043	broad.mit.edu	37	17	4576309	4576310	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:4576309_4576310GG>AA	uc002fyi.3	-	16	2202_2203	c.1976_1977CC>TT	c.(1975-1977)CCC>CTT	p.P659L	PELP1_uc010vsf.1_Missense_Mutation_p.P512L	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	659	Pro-rich.				transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						GGGCCCTGAAGGGCGATGGGGC	0.703													18	21					0	0	0.004672	0	0
GLTPD2	388323	broad.mit.edu	37	17	4692404	4692404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:4692404G>A	uc002fza.1	+	1	151	c.98G>A	c.(97-99)CGG>CAG	p.R33Q	VMO1_uc002fyx.2_5'Flank|VMO1_uc010vsh.1_5'Flank|VMO1_uc010vsi.1_5'Flank|VMO1_uc002fyy.2_5'Flank|uc002fyz.2_3'UTR	NM_001014985	NP_001014985			glycolipid transfer protein domain containing 2												0						CTCAGTGTTCGGAGCCTAGGT	0.642													9	3					0	0	0.000673	0	0
KIF1C	10749	broad.mit.edu	37	17	4926874	4926874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:4926874C>T	uc002gan.1	+	23	3066	c.2740C>T	c.(2740-2742)CCC>TCC	p.P914S		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	914					microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						AGCCCGGCCCCCCTCGCCACC	0.662													20	15					0	0	0.002299	0	0
NLRP1	22861	broad.mit.edu	37	17	5425088	5425088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:5425088G>A	uc002gci.2	-	13	4094	c.3539C>T	c.(3538-3540)TCC>TTC	p.S1180F	NLRP1_uc002gcg.1_Missense_Mutation_p.S1184F|NLRP1_uc002gck.2_Missense_Mutation_p.S1180F|NLRP1_uc002gcj.2_Missense_Mutation_p.S1150F|NLRP1_uc002gcl.2_Missense_Mutation_p.S1150F|NLRP1_uc002gch.3_Missense_Mutation_p.S1180F	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1180					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TTGGAACAGGGATGTGTCCAC	0.398													25	33					0	0	0.003954	0	0
KIAA0753	9851	broad.mit.edu	37	17	6493149	6493149	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:6493149G>A	uc002gde.3	-	18	3095	c.2736C>T	c.(2734-2736)ATC>ATT	p.I912I	KIAA0753_uc010vtd.1_Silent_p.I368I|KIAA0753_uc010clo.2_Silent_p.I613I|KIAA0753_uc010vte.1_Silent_p.I613I	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	912						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		CATGAGATATGATCCGAAGGT	0.473													19	15					0	0	0.001523	0	0
TEKT1	83659	broad.mit.edu	37	17	6716248	6716248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:6716248C>T	uc002gdt.2	-	6	864	c.754G>A	c.(754-756)GAT>AAT	p.D252N	TEKT1_uc010vth.1_Missense_Mutation_p.D106N	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	252					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				TTGCGCAGATCATTGGCTGTC	0.542													54	42					0	0	0.003610	0	0
CLEC10A	10462	broad.mit.edu	37	17	6981423	6981423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:6981423G>A	uc002gek.2	-	3	380	c.77C>T	c.(76-78)CCT>CTT	p.P26L	CLEC10A_uc002gej.2_Missense_Mutation_p.P26L|CLEC10A_uc002gel.2_Missense_Mutation_p.P26L|CLEC10A_uc010clv.1_Missense_Mutation_p.P26L	NM_182906	NP_878910	Q8IUN9	CLC10_HUMAN	C-type lectin, superfamily member 14 isoform 1	26	Cytoplasmic (Potential).				endocytosis|innate immune response	integral to membrane|plasma membrane	sugar binding				0						GGACTGGAGAGGAAGTGGCCC	0.637													17	19					0	0	0.006122	0	0
ZBTB4	57659	broad.mit.edu	37	17	7369619	7369619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:7369619G>A	uc002ghc.3	-	3	752	c.502C>T	c.(502-504)CGC>TGC	p.R168C	ZBTB4_uc002ghd.3_Missense_Mutation_p.R168C	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	168					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		CCCAGACGGCGCCCCAAAGCT	0.647													10	8					0	0	0.001855	0	0
DNAH2	146754	broad.mit.edu	37	17	7695641	7695641	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:7695641G>A	uc002giu.1	+	45	7139	c.7125G>A	c.(7123-7125)AAG>AAA	p.K2375K		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2375					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGCTCCCTAAGAGTTGGCGCT	0.542													36	27					0	0	0.002222	0	0
KDM6B	23135	broad.mit.edu	37	17	7752023	7752023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:7752023C>T	uc002giw.1	+	11	2793	c.2417C>T	c.(2416-2418)TCC>TTC	p.S806F	KDM6B_uc002gix.2_Missense_Mutation_p.S108F	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	806	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						CTGCTCAAATCCTTGGCCTCC	0.383													26	16					0	0	0.004656	0	0
CHD3	1107	broad.mit.edu	37	17	7808467	7808467	+	Silent	SNP	C	T	T	rs146189491		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:7808467C>T	uc002gje.2	+	26	4272	c.4122C>T	c.(4120-4122)TTC>TTT	p.F1374F	CHD3_uc002gjd.2_Silent_p.F1433F|CHD3_uc002gjf.2_Silent_p.F1374F|CHD3_uc002gjh.2_5'UTR|SCARNA21_uc002gji.1_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1374					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				ATGAAGACTTCGATGAACGTC	0.512													32	26					0	0	0.002836	0	0
ALOX12B	242	broad.mit.edu	37	17	7990686	7990686	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:7990686G>A	uc002gjy.1	-	1	336	c.75C>T	c.(73-75)ACC>ACT	p.T25T	hsa-mir-4314|MI0015846_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	25	PLAT.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						TCCCCACAATGGTCAGTGAGA	0.512										Multiple Myeloma(8;0.094)			55	40					0	0	0.003610	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8218223	8218223	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:8218223G>A	uc002glc.2	+	5	1111	c.990_splice	c.e5-1	p.R330_splice	ARHGEF15_uc002gld.2_Splice_Site_p.R330_splice|ARHGEF15_uc010vuw.1_Splice_Site_p.R219_splice	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15						negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						TTTCTCCACAGGGAAGAGGAG	0.607													13	13					0	0	0.001368	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8222664	8222664	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:8222664A>G	uc002glc.2	+	14	2342	c.2221A>G	c.(2221-2223)ACC>GCC	p.T741A	ARHGEF15_uc002gld.2_Missense_Mutation_p.T741A|ARHGEF15_uc010vuw.1_Missense_Mutation_p.T630A	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	741					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						AGCCTTCCCAACCCCAGGCCC	0.577													56	33					0	0	0.003610	0	0
SPDYE4	388333	broad.mit.edu	37	17	8660636	8660636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:8660636C>T	uc010cnz.1	-	2	461	c.284G>A	c.(283-285)CGA>CAA	p.R95Q		NM_001128076	NP_001121548	A6NLX3	SPDE4_HUMAN	speedy homolog E4	95											0						TGCTCGCTTTCGCTTCAGCTT	0.507													4	6					0	0	0.000602	0	0
DHRS7C	201140	broad.mit.edu	37	17	9683210	9683210	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:9683210T>C	uc010vvb.1	-	3	413	c.413A>G	c.(412-414)AAG>AGG	p.K138R	DHRS7C_uc010cof.2_Missense_Mutation_p.K137R	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	138						extracellular region	binding|oxidoreductase activity				0						CAGAGAAATCTTATGGGCAGG	0.483													9	14					0	0	0.000443	0	0
MYH13	8735	broad.mit.edu	37	17	10267752	10267752	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:10267752G>A	uc002gmk.1	-	3	186	c.96C>T	c.(94-96)TTC>TTT	p.F32F		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	32	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCTTGGAATCGAATGGACGAT	0.463													12	16					0	0	0.002450	0	0
MYH8	4626	broad.mit.edu	37	17	10296203	10296203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:10296203G>A	uc002gmm.2	-	37	5503	c.5408C>T	c.(5407-5409)GCC>GTC	p.A1803V	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1803	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CAGCTGCTCGGCCTCATCTAG	0.572									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				70	40					0	0	0.003610	0	0
MYH8	4626	broad.mit.edu	37	17	10319000	10319000	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:10319000G>A	uc002gmm.2	-	6	632	c.537C>T	c.(535-537)ATC>ATT	p.I179I	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	179	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCACATACGTGATCAGGATGG	0.343									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				10	11					0	0	0.000978	0	0
MYH1	4619	broad.mit.edu	37	17	10408608	10408608	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:10408608G>A	uc002gmo.2	-	21	2401	c.2307C>T	c.(2305-2307)TTC>TTT	p.F769F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	769	Myosin head-like.|Actin-binding (By similarity).					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GACCAGCTTTGAAAAAGACCT	0.458													19	29					0	0	0.001216	0	0
DNAH9	1770	broad.mit.edu	37	17	11725779	11725779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:11725779G>A	uc002gne.2	+	47	8943	c.8875G>A	c.(8875-8877)GGA>AGA	p.G2959R	DNAH9_uc010coo.2_Missense_Mutation_p.G2253R	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2959	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTCCCCTGTGGGAAACAAGCT	0.542													26	44					0	0	0.001061	0	0
MYOCD	93649	broad.mit.edu	37	17	12639642	12639642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:12639642G>A	uc002gnn.2	+	6	879	c.580G>A	c.(580-582)GGG>AGG	p.G194R	MYOCD_uc002gno.2_Missense_Mutation_p.G194R|MYOCD_uc002gnp.1_Missense_Mutation_p.G98R	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	194	HDAC5-binding (By similarity).				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AGGTTCTCTGGGGACAAACCA	0.458													37	35					0	0	0.004289	0	0
ZNF624	57547	broad.mit.edu	37	17	16525964	16525964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:16525964G>A	uc010cpi.1	-	6	2319	c.2236C>T	c.(2236-2238)CAT>TAT	p.H746Y		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	746	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TCTCCACTATGGATTTTCTGA	0.418													57	53					0	0	0.003610	0	0
CCDC144A	9720	broad.mit.edu	37	17	16593786	16593786	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:16593786G>A	uc002gqk.1	+	1	148	c.72G>A	c.(70-72)AGG>AGA	p.R24R		NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	24											0						ACGCCACGAGGAAGACCCCTA	0.657													13	12					0	0	0.001855	0	0
RAI1	10743	broad.mit.edu	37	17	17699091	17699091	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:17699091G>A	uc002grm.2	+	3	3298	c.2829G>A	c.(2827-2829)GAG>GAA	p.E943E	RAI1_uc002grn.1_Silent_p.E943E	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	943						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GCTGGTTTGAGTCCTCTCTGT	0.642													17	12					0	0	0.000958	0	0
RAI1	10743	broad.mit.edu	37	17	17701531	17701531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:17701531C>T	uc002grm.2	+	3	5738	c.5269C>T	c.(5269-5271)CCT>TCT	p.P1757S	RAI1_uc002grn.1_Missense_Mutation_p.P1757S	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1757						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GCCCCCCAGGCCTGACGGCCC	0.701													7	7					0	0	0.004482	0	0
MYO15A	51168	broad.mit.edu	37	17	18023559	18023559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:18023559G>A	uc010vxh.1	+	2	1783	c.1445G>A	c.(1444-1446)CGA>CAA	p.R482Q		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	482	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CTCTTCCCGCGACCCCAGGTG	0.632													15	7					0	0	0.006122	0	0
MYO15A	51168	broad.mit.edu	37	17	18045051	18045051	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:18045051C>T	uc010vxh.1	+	22	5954	c.5616C>T	c.(5614-5616)GTC>GTT	p.V1872V		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1872	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TGTGCAAAGTCATGCCAAACA	0.577											OREG0024223	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	39					0	0	0.003610	0	0
SLC47A2	146802	broad.mit.edu	37	17	19584970	19584970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:19584970C>T	uc002gwe.3	-	14	1461	c.1286G>A	c.(1285-1287)GGA>GAA	p.G429E	SLC47A2_uc002gwg.3_Missense_Mutation_p.G393E|SLC47A2_uc002gwf.3_Missense_Mutation_p.G407E|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_RNA|SLC47A2_uc010cqs.1_RNA	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	429	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					TCTCAGAACTCCGCCATAGAC	0.413													17	12					0	0	0.001523	0	0
SARM1	23098	broad.mit.edu	37	17	26685996	26685996	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:26685996T>C	uc010wah.1	+	2	276	c.269T>C	c.(268-270)GTT>GCT	p.V90A	POLDIP2_uc002haz.2_5'Flank|POLDIP2_uc010wag.1_5'Flank|TMEM199_uc002hba.2_Missense_Mutation_p.V90A	NM_152464	NP_689677	Q6SZW1	SARM1_HUMAN	transmembrane protein 199	Error:Variant_position_missing_in_Q6SZW1_after_alignment					innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CTCCCAGAGGTTGTGAAGCCT	0.413													22	23					0	0	0.002780	0	0
FOXN1	8456	broad.mit.edu	37	17	26851738	26851738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:26851738G>A	uc010crm.2	+	3	539	c.341G>A	c.(340-342)CGA>CAA	p.R114Q	FOXN1_uc002hbj.2_Missense_Mutation_p.R114Q	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	114					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					AGCCCTGGGCGATTCCTCAAG	0.657													8	5					0	0	0.004482	0	0
PHF12	57649	broad.mit.edu	37	17	27240100	27240100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:27240100G>A	uc002hdg.1	-	9	2019	c.1489C>T	c.(1489-1491)CCC>TCC	p.P497S	PHF12_uc010wbb.1_Missense_Mutation_p.P479S|PHF12_uc002hdi.1_Missense_Mutation_p.P493S|PHF12_uc002hdj.1_Missense_Mutation_p.P497S|PHF12_uc010crw.1_Missense_Mutation_p.P200S|PHF12_uc002hdh.1_Missense_Mutation_p.P280S	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	497	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			ATCCCTGAGGGGCAGGACAAG	0.547													32	41					0	0	0.003271	0	0
SSH2	85464	broad.mit.edu	37	17	28120914	28120914	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:28120914C>T	uc002heo.1	-	2	105	c.105G>A	c.(103-105)AGG>AGA	p.R35R	SSH2_uc010wbh.1_Silent_p.R62R|SSH2_uc002hep.1_Silent_p.R35R|SSH2_uc002her.2_Silent_p.R35R|SSH2_uc010csc.1_Silent_p.R35R	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	35					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						AAACATACCTCCTGGGCTGTG	0.338													32	24					0	0	0.005524	0	0
RFFL	117584	broad.mit.edu	37	17	33353483	33353483	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:33353483G>A	uc002hin.1	-	2	263	c.90C>T	c.(88-90)TCC>TCT	p.S30S	RFFL_uc002hiq.2_Intron|RFFL_uc002him.1_Silent_p.S30S|RFFL_uc010cti.1_Silent_p.S36S|RFFL_uc002hip.1_Silent_p.S30S|RFFL_uc002hio.1_Silent_p.S30S	NM_001017368	NP_001017368	Q8WZ73	RFFL_HUMAN	rififylin	30					apoptosis	membrane	ligase activity|zinc ion binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		ACCCAGGGTTGGAATAGGCCT	0.582													18	14					0	0	0.006122	0	0
TADA2A	6871	broad.mit.edu	37	17	35797851	35797851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:35797851C>T	uc002hnt.2	+	5	362	c.205C>T	c.(205-207)CCT>TCT	p.P69S	TADA2A_uc002hnu.1_Missense_Mutation_p.P69S|TADA2A_uc002hnv.2_Missense_Mutation_p.P69S|TADA2A_uc010wdd.1_Missense_Mutation_p.P69S|TADA2A_uc002hnw.2_5'UTR|TADA2A_uc010cvb.2_5'UTR	NM_001488	NP_001479	O75478	TAD2A_HUMAN	transcriptional adaptor 2A isoform a	69					histone H3 acetylation|transcription from RNA polymerase II promoter	chromosome|PCAF complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|zinc ion binding			breast(3)|skin(1)	4						TTCAGATTTTCCTGTCCTTGA	0.338													51	45					0	0	0.003610	0	0
GPR179	440435	broad.mit.edu	37	17	36484369	36484369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:36484369C>T	uc002hpz.2	-	11	5104	c.5083G>A	c.(5083-5085)GAA>AAA	p.E1695K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1695	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GTCAAGTTTTCCTCCACATCC	0.552													32	34					0	0	0.002445	0	0
ZPBP2	124626	broad.mit.edu	37	17	38031605	38031605	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:38031605T>C	uc002hte.2	+	7	960	c.807T>C	c.(805-807)AGT>AGC	p.S269S	ZPBP2_uc002htf.2_Silent_p.S247S	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2	269					binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			TGGACCACAGTTTGCAAGTAG	0.378													13	16					0	0	0.003163	0	0
KRT12	3859	broad.mit.edu	37	17	39023203	39023203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:39023203C>T	uc002hvk.2	-	1	260	c.236G>A	c.(235-237)GGA>GAA	p.G79E		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	79	Head.|Gly-rich.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				ACCCAGTCCTCCTGCCATGGA	0.597													42	32					0	0	0.002222	0	0
KRTAP1-1	81851	broad.mit.edu	37	17	39197605	39197605	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:39197605G>A	uc002hvw.1	-	1	109	c.45C>T	c.(43-45)TCC>TCT	p.S15S		NM_030967	NP_112229	Q07627	KRA11_HUMAN	keratin associated protein 1-1	15			PSCSTSGTCGSSCCQPSCCETSSCQPRCCETSCCQPSCCQT SFCGFP -> R (in allele KAP1.6).			extracellular region|keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			TCCCACTGGTGGAGCAGCTGG	0.592													37	32					0	0	0.004878	0	0
JUP	3728	broad.mit.edu	37	17	39920986	39920986	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:39920986G>A	uc002hxq.2	-	7	1414	c.1137C>T	c.(1135-1137)CTC>CTT	p.L379L	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Silent_p.L379L|JUP_uc002hxs.2_Silent_p.L379L	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	379	ARM 4.				adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		CCACATCTGAGAGGTTGCGCA	0.647													11	21					0	0	0.001368	0	0
GHDC	84514	broad.mit.edu	37	17	40344262	40344262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:40344262C>T	uc002hzd.2	-	4	1370	c.886G>A	c.(886-888)GGA>AGA	p.G296R	GHDC_uc002hzg.1_Missense_Mutation_p.G296R|GHDC_uc010wgg.1_Missense_Mutation_p.G257R|GHDC_uc002hze.3_Missense_Mutation_p.G296R|GHDC_uc002hzf.3_Missense_Mutation_p.G296R|GHDC_uc010cxz.2_RNA	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	296						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		CACTGACCTCCCGAGGCAGCA	0.542													12	119					0	0	0.001855	0	0
GPATCH8	23131	broad.mit.edu	37	17	42476474	42476475	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:42476474_42476475CC>TT	uc002igw.1	-	8	3034_3035	c.2970_2971GG>AA	c.(2968-2973)CGGGAC>CGAAAC	p.D991N	GPATCH8_uc002igv.1_Missense_Mutation_p.D913N|GPATCH8_uc010wiz.1_Missense_Mutation_p.D913N	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	991	Ser-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		CGGCTGCGGTCCCGGCTATAGC	0.649													15	9					0	0	0.004672	0	0
FMNL1	752	broad.mit.edu	37	17	43323944	43323944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:43323944G>A	uc002iin.2	+	26	3484	c.3284G>A	c.(3283-3285)GGA>GAA	p.G1095E	FMNL1_uc002iiq.2_Intron|FMNL1_uc010dag.2_Intron|LOC100133991_uc010dah.2_5'Flank	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	1095					actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						GCCAGCCTGGGAGAAGAGATG	0.657											OREG0024478	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	27					0	0	0.002450	0	0
OSBPL7	114881	broad.mit.edu	37	17	45888181	45888181	+	Silent	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:45888181G>T	uc002ilx.1	-	17	1961	c.1758C>A	c.(1756-1758)ATC>ATA	p.I586I	OSBPL7_uc002ilw.1_Silent_p.I148I	NM_145798	NP_665741	Q9BZF2	OSBL7_HUMAN	oxysterol-binding protein-like protein 7	586					lipid transport		lipid binding				0						GGCAGGCCGAGATAGGGGGGT	0.602													5	8					0.00116845	0.00227352	0.001168	1	0
SCRN2	90507	broad.mit.edu	37	17	45915240	45915240	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:45915240G>A	uc002imd.2	-	8	1374	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F	SCRN2_uc002imc.2_Silent_p.F424F|SCRN2_uc002imf.2_3'UTR|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	416					proteolysis		dipeptidase activity			ovary(1)	1						CCCTCTTCACGAAGGCCTGGA	0.662													16	9					0	0	0.004990	0	0
TTLL6	284076	broad.mit.edu	37	17	46863623	46863624	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:46863623_46863624CC>AA	uc010wlo.1	-	13	1698_1699	c.1663_1664GG>TT	c.(1663-1665)GGG>TTG	p.G555L	TTLL6_uc002iob.2_Missense_Mutation_p.G248L|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Missense_Mutation_p.G308L|TTLL6_uc002iod.2_Missense_Mutation_p.G402L	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	507						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						TGCCGATTCCCCCTGCATCTCT	0.515													8	291					0	0	0.004672	0	0
ABI3	51225	broad.mit.edu	37	17	47300000	47300000	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:47300000T>A	uc002iop.1	+	8	1522	c.1024T>A	c.(1024-1026)TCC>ACC	p.S342T	ABI3_uc002ioq.1_Missense_Mutation_p.S336T	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	342	SH3.				cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			TCGCCGCTACTCCGATGGCTG	0.602										HNSCC(55;0.14)			8	8					0	0	0.003080	0	0
BZRAP1	9256	broad.mit.edu	37	17	56404061	56404061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:56404061C>T	uc002ivx.3	-	2	1295	c.424G>A	c.(424-426)GAG>AAG	p.E142K	BZRAP1_uc010dcs.2_Missense_Mutation_p.E142K|BZRAP1_uc010wnt.1_Missense_Mutation_p.E142K|uc010dct.1_5'Flank|uc010dcu.1_5'Flank	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	142						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGGTTTTCCTCCTTAAGGATG	0.617													23	58					0	0	0.005443	0	0
MTMR4	9110	broad.mit.edu	37	17	56573371	56573372	+	Missense_Mutation	DNP	CG	AT	AT	rs145309683		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:56573371_56573372CG>AT	uc002iwj.2	-	16	2241_2242	c.2131_2132CG>AT	c.(2131-2133)CGG>ATG	p.R711M		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	711						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTTCATTTCCCGAGGCACTGCG	0.49													10	390					0	0	0.004672	0	0
TEX14	56155	broad.mit.edu	37	17	56692691	56692691	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:56692691C>T	uc010dcz.1	-	8	919	c.801G>A	c.(799-801)GGG>GGA	p.G267G	TEX14_uc002iwr.1_Silent_p.G261G|TEX14_uc002iws.1_Silent_p.G261G|TEX14_uc010dda.1_Silent_p.G41G	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	267	Protein kinase.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGACCCTGCTCCCATTCCACA	0.527													33	59					0	0	0.002836	0	0
USP32	84669	broad.mit.edu	37	17	58300780	58300780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:58300780G>A	uc002iyo.1	-	14	1886	c.1600C>T	c.(1600-1602)CCA>TCA	p.P534S	USP32_uc002iyn.1_Missense_Mutation_p.P204S	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	534	DUSP.				protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			ACCTTTACTGGTTCTTGAGTT	0.343													28	64					0	0	0.001271	0	0
TBX4	9496	broad.mit.edu	37	17	59556019	59556019	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:59556019C>A	uc002izi.2	+	5	626	c.581C>A	c.(580-582)CCG>CAG	p.P194Q	TBX4_uc010ddo.2_Missense_Mutation_p.P194Q|TBX4_uc010woy.1_Missense_Mutation_p.P194Q	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	194	T-box.				leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						AAGTACCAGCCGCGGCTCCAC	0.542													39	69					8.16277e-20	1.6114e-19	0.001485	1	0
MED13	9969	broad.mit.edu	37	17	60030366	60030366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:60030366G>A	uc002izo.2	-	27	6154	c.6077C>T	c.(6076-6078)TCT>TTT	p.S2026F		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	2026					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						AGATCCTGGAGAATGTACAGG	0.363													47	86					0	0	0.003610	0	0
TLK2	11011	broad.mit.edu	37	17	60689856	60689856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:60689856C>T	uc010ddp.2	+	23	2517	c.2249C>T	c.(2248-2250)TCT>TTT	p.S750F	TLK2_uc002izx.3_Missense_Mutation_p.S576F|TLK2_uc002izz.3_Missense_Mutation_p.S728F|TLK2_uc002jaa.3_Missense_Mutation_p.S696F|TLK2_uc010wpd.1_Missense_Mutation_p.S696F	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	750					cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						AAGTCAGTCTCTACAAGTAGC	0.502													31	55					0	0	0.001512	0	0
TANC2	26115	broad.mit.edu	37	17	61432354	61432354	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:61432354C>T	uc002jal.3	+	12	1986	c.1963C>T	c.(1963-1965)CTA>TTA	p.L655L	TANC2_uc010wpe.1_Silent_p.L565L|TANC2_uc002jam.1_Silent_p.L22L	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	655							binding			ovary(2)	2						AGGGTCCTATCTATATCTGAA	0.383													41	76					0	0	0.002522	0	0
GH2	2689	broad.mit.edu	37	17	61958757	61958757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:61958757G>A	uc002jco.1	-	2	195	c.133C>T	c.(133-135)CGC>TGC	p.R45C	GH2_uc002jcj.2_Missense_Mutation_p.R45C|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Missense_Mutation_p.R45C|GH2_uc002jcm.1_Missense_Mutation_p.R45C|GH2_uc002jcn.1_Missense_Mutation_p.R45C	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	45						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						TGGTACAGGCGACGGGCGCGG	0.572													86	182					0	0	0.003610	0	0
CSHL1	1444	broad.mit.edu	37	17	61987797	61987797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:61987797C>T	uc002jda.1	-	3	351	c.289G>A	c.(289-291)GAA>AAA	p.E97K	CSHL1_uc002jcz.1_Missense_Mutation_p.E74K|CSHL1_uc002jdb.1_Missense_Mutation_p.E3K|CSHL1_uc002jdc.1_Missense_Mutation_p.E14K|CSHL1_uc002jdd.1_Missense_Mutation_p.E35K|CSHL1_uc002jde.2_Silent_p.R194R|CSHL1_uc002jdf.2_Missense_Mutation_p.E14K|CSHL1_uc002jdg.2_Silent_p.R166R|CSHL1_uc002jdh.2_Missense_Mutation_p.E3K	NM_022579	NP_072101	Q14406	CSHL_HUMAN	chorionic somatomammotropin hormone-like 1	97						extracellular region	hormone activity|metal ion binding				0						TGCTGCGTTTCCTCCATGTTG	0.557													57	76					0	0	0.003610	0	0
PRKCA	5578	broad.mit.edu	37	17	64734896	64734896	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:64734896C>T	uc002jfp.1	+	11	1289	c.1245C>T	c.(1243-1245)TTC>TTT	p.F415F	PRKCA_uc002jfo.1_Silent_p.F286F	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	415	Protein kinase.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	GGCTGTACTTCGTCATGGAAT	0.463													39	56					0	0	0.003610	0	0
HELZ	9931	broad.mit.edu	37	17	65116564	65116564	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:65116564T>C	uc010wqk.1	-	27	3985	c.3798A>G	c.(3796-3798)CAA>CAG	p.Q1266Q	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Silent_p.Q1265Q	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					GATGCTGATTTTGTGGCTGGC	0.438													23	61					0	0	0.003954	0	0
BPTF	2186	broad.mit.edu	37	17	65850238	65850238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:65850238C>T	uc002jgf.2	+	2	857	c.796C>T	c.(796-798)CGC>TGC	p.R266C	BPTF_uc002jge.2_Missense_Mutation_p.R266C|BPTF_uc010wqm.1_Missense_Mutation_p.R266C	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	266	DDT.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			ATCTCCTTTTCGCTTTGAGGA	0.443													30	79					0	0	0.001271	0	0
ABCA8	10351	broad.mit.edu	37	17	66871424	66871424	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:66871424G>A	uc002jhp.2	-	35	4667	c.4488C>T	c.(4486-4488)TTC>TTT	p.F1496F	ABCA8_uc002jhq.2_Silent_p.F1536F|ABCA8_uc010wqq.1_Silent_p.F1531F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1496						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					CAGCCTGGGGGAAAAGCCTCA	0.463													32	53					0	0	0.003271	0	0
ABCA9	10350	broad.mit.edu	37	17	66981089	66981089	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:66981089G>T	uc002jhu.2	-	34	4459	c.4316C>A	c.(4315-4317)CCG>CAG	p.P1439Q	ABCA9_uc010dez.2_Missense_Mutation_p.P1401Q	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1439	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					CACCACTGACGGGTTCCCCAG	0.592													5	91					0.00116845	0.00227352	0.001168	1	0
ABCA10	10349	broad.mit.edu	37	17	67152008	67152008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:67152008C>T	uc010dfa.1	-	30	4393	c.3514G>A	c.(3514-3516)GAA>AAA	p.E1172K	ABCA10_uc010wqs.1_Missense_Mutation_p.E164K|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1172					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TGAACATCTTCATCTTCTTCT	0.428													60	75					0	0	0.003610	0	0
MAP2K6	5608	broad.mit.edu	37	17	67515502	67515502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:67515502G>A	uc002jij.2	+	5	583	c.295G>A	c.(295-297)GAT>AAT	p.D99N	MAP2K6_uc002jii.2_Missense_Mutation_p.D99N|MAP2K6_uc002jik.2_Missense_Mutation_p.D129N	NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	99	Protein kinase.				activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					GCTACTGATGGATTTGGATAT	0.468													62	101					0	0	0.003610	0	0
SLC39A11	201266	broad.mit.edu	37	17	71080986	71080986	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:71080986C>T	uc002jjb.2	-	3	224	c.109_splice	c.e3-1	p.R37_splice	SLC39A11_uc002jja.2_Splice_Site_p.R37_splice|SLC39A11_uc002jjc.1_Splice_Site_p.R37_splice	NM_001159770	NP_001153242	Q8N1S5	S39AB_HUMAN	solute carrier family 39, member 11 isoform 1						zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)	1						AGATCCGCCTCTGAAAATCAA	0.418													18	43					0	0	0.001216	0	0
SDK2	54549	broad.mit.edu	37	17	71354253	71354253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:71354253G>A	uc010dfm.2	-	40	5558	c.5558C>T	c.(5557-5559)CCC>CTC	p.P1853L	SDK2_uc002jjt.3_Missense_Mutation_p.P993L|SDK2_uc010dfn.2_Missense_Mutation_p.P1532L	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1853	Fibronectin type-III 13.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GCGGGTGATGGGCCCTTTGCC	0.657													69	116					0	0	0.003610	0	0
KIF19	124602	broad.mit.edu	37	17	72338033	72338033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:72338033C>T	uc002jkm.3	+	3	277	c.139C>T	c.(139-141)CCA>TCA	p.P47S	KIF19_uc002jkj.2_Missense_Mutation_p.P47S|KIF19_uc002jkk.2_Missense_Mutation_p.P47S|KIF19_uc002jkl.2_Missense_Mutation_p.P47S	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	47	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						TCTCATGGACCCAATGGAGGA	0.617													36	81					0	0	0.004289	0	0
KIF19	124602	broad.mit.edu	37	17	72350632	72350632	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:72350632G>A	uc002jkm.3	+	18	2778	c.2640G>A	c.(2638-2640)AGG>AGA	p.R880R		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	880					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GCAAGAAAAGGGAGGAGTCGC	0.677													5	12					0	0	0.001984	0	0
CASKIN2	57513	broad.mit.edu	37	17	73500746	73500746	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:73500746C>T	uc002joc.2	-	12	1771	c.1221G>A	c.(1219-1221)GAG>GAA	p.E407E	CASKIN2_uc010wsc.1_Silent_p.E325E	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	407						cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCACGCTGCCCTCACTGCCCA	0.637													6	3					0	0	0.001168	0	0
TSEN54	283989	broad.mit.edu	37	17	73518163	73518163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:73518163C>T	uc002jof.1	+	8	1034	c.1001C>T	c.(1000-1002)GCT>GTT	p.A334V		NM_207346	NP_997229	Q7Z6J9	SEN54_HUMAN	tRNA splicing endonuclease 54 homolog	334					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	nucleolus				ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GAGACAGACGCTGAGTCCTGG	0.657													3	4					0	0	0.000248	0	0
GALK1	2584	broad.mit.edu	37	17	73759118	73759118	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:73759118G>A	uc010wsi.1	-	4	651	c.588C>T	c.(586-588)GGC>GGT	p.G196G	GALK1_uc002jpk.2_Silent_p.G196G|GALK1_uc010wsj.1_3'UTR	NM_000154	NP_000145	P51570	GALK1_HUMAN	galactokinase 1	196					galactose catabolic process	cytosol	ATP binding|galactokinase activity|galactose binding				0	all_cancers(13;1.5e-07)		all cancers(21;1.03e-06)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCAGCGCGTGGCCTTTCTGTC	0.652													24	42					0	0	0.003954	0	0
EVPL	2125	broad.mit.edu	37	17	74006039	74006039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:74006039C>T	uc002jqi.2	-	22	3475	c.3247G>A	c.(3247-3249)GAG>AAG	p.E1083K	EVPL_uc010wss.1_Missense_Mutation_p.E1105K|EVPL_uc010wst.1_Missense_Mutation_p.E553K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1083	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGATTCTTCTCCACCTTGACT	0.602													7	171					0	0	0.001984	0	0
RHBDF2	79651	broad.mit.edu	37	17	74470605	74470605	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:74470605G>A	uc002jrq.1	-	12	1694	c.1401C>T	c.(1399-1401)ATC>ATT	p.I467I	RHBDF2_uc002jrp.1_Silent_p.I438I|RHBDF2_uc002jrr.1_Silent_p.I319I|RHBDF2_uc010wtf.1_3'UTR	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	467	Lumenal (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						CCCCCAGGTGGATCAGGTCAA	0.642													26	51					0	0	0.001786	0	0
MGAT5B	146664	broad.mit.edu	37	17	74928858	74928858	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:74928858G>A	uc002jti.2	+	10	1558	c.1455_splice	c.e10+1	p.K485_splice	MGAT5B_uc002jth.2_Splice_Site_p.K474_splice	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2							Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						CATCTGGAAGGTGAGCGCGGC	0.687													18	41					0	0	0.004990	0	0
BIRC5	332	broad.mit.edu	37	17	76212781	76212781	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:76212781C>T	uc002jvg.2	+	3	379	c.258C>T	c.(256-258)TTC>TTT	p.F86F	BIRC5_uc002jve.1_Intron|BIRC5_uc002jvd.1_Silent_p.F109F|BIRC5_uc010dhk.1_RNA|BIRC5_uc010dhl.1_Silent_p.F134F|BIRC5_uc002jvf.2_Silent_p.F109F|BIRC5_uc002jvh.2_Intron|BIRC5_uc002jvi.2_RNA|EPR1_uc002jvj.1_RNA	NM_001168	NP_001159	O15392	BIRC5_HUMAN	baculoviral IAP repeat-containing protein 5	86	BIR.				anti-apoptosis|apoptosis|cell division|chromosome segregation|cytokinesis|establishment of chromosome localization|G2/M transition of mitotic cell cycle|mitosis|mitotic prometaphase|positive regulation of exit from mitosis|positive regulation of mitotic cell cycle|protein complex localization|spindle checkpoint	centriole|chromosome passenger complex|chromosome, centromeric region|cytoplasm|cytoplasmic microtubule|cytosol|interphase microtubule organizing center|midbody|midbody|nuclear chromosome|spindle|spindle microtubule	caspase inhibitor activity|chaperone binding|cobalt ion binding|cofactor binding|cysteine-type endopeptidase inhibitor activity|metal ion binding|microtubule binding|protein heterodimerization activity|protein homodimerization activity|Ran GTPase binding|zinc ion binding			kidney(1)	1			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.153)			GTTGCGCTTTCCTTTCTGTCA	0.413													35	80					0	0	0.003755	0	0
Unknown	0	broad.mit.edu	37	17	76497195	76497195	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:76497195G>A	uc002jvt.1	+	2		c.2654G>A								Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		CCTCCAAGTCGGACAGTTCCA	0.368													16	31					0	0	0.004007	0	0
CBX4	8535	broad.mit.edu	37	17	77808070	77808070	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:77808070G>A	uc002jxe.2	-	5	1534	c.1371C>T	c.(1369-1371)CTC>CTT	p.L457L		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	457	Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CGGGCTGCGGGAGGGCGGCGG	0.716													5	14					0	0	0.000602	0	0
CCDC40	55036	broad.mit.edu	37	17	78063628	78063628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:78063628C>T	uc010dht.2	+	17	2804	c.2777C>T	c.(2776-2778)TCC>TTC	p.S926F	CCDC40_uc002jxm.3_Missense_Mutation_p.S709F|CCDC40_uc002jxn.3_Missense_Mutation_p.S322F	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	926	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TCAGTGGATTCCGAGATCGGC	0.552													24	20					0	0	0.005443	0	0
SGSH	6448	broad.mit.edu	37	17	78184718	78184718	+	Missense_Mutation	SNP	G	A	A	rs146494740		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:78184718G>A	uc002jxz.3	-	8	1129	c.1042C>T	c.(1042-1044)CTC>TTC	p.L348F	SGSH_uc002jya.3_Missense_Mutation_p.L145F|SGSH_uc002jxy.2_3'UTR	NM_000199	NP_000190	P51688	SPHM_HUMAN	N-sulfoglucosamine sulfohydrolase precursor	348					proteoglycan metabolic process	lysosome	metal ion binding|N-sulfoglucosamine sulfohydrolase activity|sulfuric ester hydrolase activity			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			GCCGGCAGGAGGGACCGGCCA	0.647													30	48					0	0	0.001786	0	0
Unknown	0	broad.mit.edu	37	17	78247135	78247135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:78247135C>T	uc002jye.1	+	3	336	c.193C>T	c.(193-195)CCG>TCG	p.P65S	uc002jyf.2_Missense_Mutation_p.P65S					Homo sapiens mRNA for KIAA1618 protein, partial cds.																		GTGCTTGTTCCCGGGCTCAGA	0.602													19	37					0	0	0.006122	0	0
NPTX1	4884	broad.mit.edu	37	17	78444653	78444653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:78444653G>A	uc002jyp.1	-	5	1417	c.1259C>T	c.(1258-1260)GCC>GTC	p.A420V		NM_002522	NP_002513	Q15818	NPTX1_HUMAN	neuronal pentraxin I precursor	420	Pentaxin.				central nervous system development|synaptic transmission|transport	transport vesicle	metal ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			CCACTTGGTGGCCCCTCCGTA	0.657													14	33					0	0	0.000958	0	0
BAHCC1	57597	broad.mit.edu	37	17	79414171	79414171	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:79414171G>A	uc002kaf.2	+	9	3273	c.3273G>A	c.(3271-3273)CCG>CCA	p.P1091P	BAHCC1_uc002kae.2_Silent_p.P321P	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	1091							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CCACCGCCCCGGGGGCCCAGC	0.682													17	25					0	0	0.000958	0	0
PCYT2	5833	broad.mit.edu	37	17	79864690	79864690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:79864690C>T	uc002kcf.1	-	7	685	c.622G>A	c.(622-624)GAG>AAG	p.E208K	PCYT2_uc010wva.1_Missense_Mutation_p.E176K|PCYT2_uc010wvb.1_Missense_Mutation_p.E176K|PCYT2_uc002kce.1_Missense_Mutation_p.E130K|PCYT2_uc002kcg.1_Missense_Mutation_p.E237K|PCYT2_uc002kch.1_Missense_Mutation_p.E226K|PCYT2_uc002kci.1_Missense_Mutation_p.E167K|PCYT2_uc010dii.1_Missense_Mutation_p.E208K|PCYT2_uc010wvc.1_Missense_Mutation_p.E130K	NM_002861	NP_002852	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	208	Catalytic 1 (Potential).				phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			GGCTGGGGCTCCTTCCCAGAA	0.597													19	42					0	0	0.000958	0	0
NOTUM	147111	broad.mit.edu	37	17	79913410	79913410	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:79913410G>A	uc010wvg.1	-	9	1271	c.999C>T	c.(997-999)TTC>TTT	p.F333F		NM_178493	NP_848588	Q6P988	NOTUM_HUMAN	notum pectinacetylesterase homolog precursor	333						extracellular region	hydrolase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			ACTGCACCACGAACACAGGGC	0.701													7	26					0	0	0.000673	0	0
FASN	2194	broad.mit.edu	37	17	80039891	80039892	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:80039891_80039892GG>AA	uc002kdu.2	-	36	6273_6274	c.6156_6157CC>TT	c.(6154-6159)GGCCTC>GGTTTC	p.L2053F	FASN_uc002kdv.1_RNA	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	2053	Beta-ketoacyl reductase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	CCACCTGGGAGGCCTTCGTGCC	0.347													10	21					0	0	0.004672	0	0
C17orf101	79701	broad.mit.edu	37	17	80369398	80369398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:80369398G>A	uc002keu.1	-	3	414	c.313C>T	c.(313-315)CCC>TCC	p.P105S	C17orf101_uc002ket.1_Missense_Mutation_p.P105S|C17orf101_uc010dip.1_RNA	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	105	Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						CACTTTCGGGGAGTGCAGCCT	0.622													15	32					0	0	0.001216	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6093507	6093507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:6093507G>A	uc002kmz.3	-	15	1380	c.1220C>T	c.(1219-1221)TCA>TTA	p.S407L	L3MBTL4_uc010dkt.2_Missense_Mutation_p.S407L|L3MBTL4_uc002kmy.3_Missense_Mutation_p.S245L	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	407					chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				GTTCATGTCTGAATACGGGCA	0.393													27	20					0	0	0.001061	0	0
KIAA0802	23255	broad.mit.edu	37	18	8825784	8825784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:8825784C>T	uc002knr.2	+	15	4418	c.4276C>T	c.(4276-4278)CGC>TGC	p.R1426C	KIAA0802_uc002knq.2_Missense_Mutation_p.R1385C|KIAA0802_uc002kns.2_Missense_Mutation_p.R766C	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1736											0						AGCCTGGGCCCGCTCCACCAC	0.607													14	20					0	0	0.004007	0	0
CEP192	55125	broad.mit.edu	37	18	13073048	13073048	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:13073048A>G	uc010xac.1	+	30	5560	c.5480A>G	c.(5479-5481)AAC>AGC	p.N1827S	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.N1352S|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.N249S|CEP192_uc002krw.2_5'UTR|CEP192_uc002krx.2_5'UTR	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1827										ovary(4)|pancreas(1)	5						TTGACCAGTAACTGTGAGATC	0.348													7	75					0	0	0.004482	0	0
DSC1	1823	broad.mit.edu	37	18	28710629	28710629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:28710629C>T	uc002kwn.2	-	16	2795	c.2533G>A	c.(2533-2535)GAC>AAC	p.D845N	DSC1_uc002kwm.2_3'UTR|uc002kwo.1_5'Flank	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	845	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CAAACGTAGTCTTCACAATGT	0.393													12	17					0	0	0.001368	0	0
SLC14A2	8170	broad.mit.edu	37	18	43258959	43258960	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:43258959_43258960GG>AA	uc010dnj.2	+	20	2853_2854	c.2532_2533GG>AA	c.(2530-2535)CTGGGT>CTAAGT	p.G845S	SLC14A2_uc002lbe.2_Missense_Mutation_p.G845S	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	845	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CTGCCTACCTGGGTGCTGCCCT	0.441													16	13					0	0	0.004672	0	0
DYM	54808	broad.mit.edu	37	18	46784834	46784834	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:46784834T>C	uc002ldi.1	-	12	1646	c.1281A>G	c.(1279-1281)GAA>GAG	p.E427E	DYM_uc010xdf.1_Silent_p.E237E|DYM_uc002ldj.3_Silent_p.E249E|DYM_uc010dov.1_5'UTR	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	427						Golgi apparatus					0						TTAAAACTCGTTCTGAATACC	0.358													16	14					0	0	0.004990	0	0
CCDC11	220136	broad.mit.edu	37	18	47769408	47769408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:47769408C>T	uc002lee.2	-	6	1166	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	359	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		CTGTCAAATTCTTTCTCCTGA	0.383													83	68					0	0	0.003610	0	0
ATP8B1	5205	broad.mit.edu	37	18	55361813	55361813	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:55361813C>T	uc002lgw.2	-	10	1029	c.1029_splice	c.e10+1	p.T343_splice	uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1						ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				AAAATAAATACCGTGTAAACC	0.308									Byler_disease				7	4					0	0	0.003080	0	0
ALPK2	115701	broad.mit.edu	37	18	56196448	56196448	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:56196448G>A	uc002lhj.3	-	6	5590	c.5376C>T	c.(5374-5376)ATC>ATT	p.I1792I	ALPK2_uc002lhk.1_Silent_p.I1123I	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1792	Ig-like 2.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TCTCAGCTTGGATCTTTTTCA	0.259													29	29					0	0	0.002096	0	0
CDH20	28316	broad.mit.edu	37	18	59221748	59221748	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:59221748C>T	uc010dps.1	+	11	2238	c.2226C>T	c.(2224-2226)TTC>TTT	p.F742F	CDH20_uc002lif.2_Silent_p.F736F	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	742	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CACCGCCCTTCGACTCCCTCC	0.642													7	6					0	0	0.003080	0	0
TNFRSF11A	8792	broad.mit.edu	37	18	60036029	60036029	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:60036029G>A	uc002lin.2	+	9	917	c.879G>A	c.(877-879)AAG>AAA	p.K293K	TNFRSF11A_uc010dpv.2_Intron	NM_003839	NP_003830	Q9Y6Q6	TNR11_HUMAN	tumor necrosis factor receptor superfamily,	293	Cytoplasmic (Potential).				adaptive immune response|cell-cell signaling|circadian temperature homeostasis|monocyte chemotaxis|osteoclast differentiation|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|response to interleukin-1|response to lipopolysaccharide	external side of plasma membrane|integral to membrane	metal ion binding|tumor necrosis factor receptor activity			breast(2)|lung(1)	3		Colorectal(73;0.188)				TGGAGGAGAAGACATTTCCAG	0.532									Paget_Disease_of_Bone				4	62					0	0	0.000248	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60242058	60242058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:60242058C>T	uc002lip.3	+	13	2744	c.2744C>T	c.(2743-2745)TCC>TTC	p.S915F	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.S385F	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	915					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						CCACCAGCTTCCTACCCCTTA	0.592													4	48					0	0	0.000602	0	0
SERPINB2	5055	broad.mit.edu	37	18	61565055	61565055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:61565055C>T	uc010xeu.1	+	6	845	c.512C>T	c.(511-513)TCC>TTC	p.S171F	SERPINB2_uc002ljo.2_Missense_Mutation_p.S171F|SERPINB2_uc010dqh.2_Missense_Mutation_p.S101F|SERPINB2_uc002ljp.1_5'UTR|SERPINB2_uc002ljq.1_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	171					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	AAGATTAATTCCTGGGTCAAG	0.343													19	7					0	0	0.001882	0	0
DSEL	92126	broad.mit.edu	37	18	65180090	65180090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:65180090G>A	uc002lke.1	-	2	3010	c.1786C>T	c.(1786-1788)CAT>TAT	p.H596Y		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	586						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CTCTCAATATGATCAACAACT	0.358													17	31					0	0	0.004990	0	0
ZNF407	55628	broad.mit.edu	37	18	72589239	72589239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:72589239C>T	uc002llw.2	+	4	5021	c.4964C>T	c.(4963-4965)CCG>CTG	p.P1655L	ZNF407_uc010dqu.1_Missense_Mutation_p.P1655L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1655					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GGAGAAAAGCCGTTTAAATGT	0.507													28	35					0	0	0.005443	0	0
ZNF236	7776	broad.mit.edu	37	18	74607011	74607011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr18:74607011C>T	uc002lmi.2	+	10	1652	c.1454C>T	c.(1453-1455)CCC>CTC	p.P485L	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	485	C2H2-type 10.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		CATGTGTGTCCCTACTGCGCC	0.667													21	30					0	0	0.003954	0	0
ODF3L2	284451	broad.mit.edu	37	19	467741	467742	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:467741_467742GG>AC	uc002lor.2	-	3	492_493	c.256_257CC>GT	c.(256-258)CCG>GTG	p.P86V	ODF3L2_uc010drp.2_Missense_Mutation_p.P50V	NM_182577	NP_872383	Q3SX64	OD3L2_HUMAN	outer dense fiber of sperm tails 3-like 2	86											0						GATGGGGCCCGGGCTGGTGTCC	0.649													13	63					0	0	0.004672	0	0
PCSK4	54760	broad.mit.edu	37	19	1487857	1487857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:1487857G>A	uc002ltb.1	-	5	582	c.520C>T	c.(520-522)CCC>TCC	p.P174S	PCSK4_uc002lta.2_Silent_p.T15T	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	174	Catalytic (By similarity).				proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGCCAGGGGGTCCTGGGGG	0.701													6	8					0	0	0.001168	0	0
MKNK2	2872	broad.mit.edu	37	19	2043508	2043509	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:2043508_2043509CC>TT	uc002lus.2	-	6	657_658	c.412_413GG>AA	c.(412-414)GGA>AAA	p.G138K	MKNK2_uc002luq.1_5'Flank|MKNK2_uc010xgu.1_5'UTR|MKNK2_uc010xgv.1_Missense_Mutation_p.G7K|MKNK2_uc002lur.2_Missense_Mutation_p.G138K|MKNK2_uc002lut.1_5'Flank	NM_199054	NP_951009	Q9HBH9	MKNK2_HUMAN	MAP kinase-interacting serine/threonine kinase 2	138	Protein kinase.				cell surface receptor linked signaling pathway|intracellular protein kinase cascade|regulation of translation		ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(1)|breast(1)	2		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTACCTGTGTCCCTGGCACTGG	0.579													16	23					0	0	0.004672	0	0
SF3A2	8175	broad.mit.edu	37	19	2243485	2243485	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:2243485A>G	uc002lvg.2	+	2	190	c.68A>G	c.(67-69)AAC>AGC	p.N23S		NM_007165	NP_009096	Q15428	SF3A2_HUMAN	splicing factor 3a, subunit 2	23					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex	nucleic acid binding|zinc ion binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCGAGAGCAACCGTGACCGC	0.682													9	47					0	0	0.004482	0	0
TLE6	79816	broad.mit.edu	37	19	2989603	2989603	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:2989603A>G	uc002lwu.2	+	12	1095	c.695A>G	c.(694-696)AAC>AGC	p.N232S	TLE6_uc002lwt.2_Missense_Mutation_p.N355S|TLE6_uc010dtg.2_Missense_Mutation_p.N355S|TLE6_uc002lwv.2_Missense_Mutation_p.N136S	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	232	WD 2.				regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTGGCTACAACCTGGCCAGC	0.612													4	27					0	0	0.000248	0	0
C19orf29	58509	broad.mit.edu	37	19	3623989	3623989	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:3623989G>A	uc002lyh.2	-	2	392	c.339C>T	c.(337-339)TCC>TCT	p.S113S	C19orf29_uc010dtn.2_5'Flank|C19orf29_uc002lyi.3_Silent_p.S113S|C19orf29_uc010dto.2_RNA	NM_001080543	NP_001074012	Q8WUQ7	CS029_HUMAN	chromosome 19 open reading frame 29	113						catalytic step 2 spliceosome	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGATGCTGAGGAGCTAGGAG	0.711													4	13					0	0	0.000248	0	0
EEF2	1938	broad.mit.edu	37	19	3977900	3977900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:3977900G>A	uc002lze.2	-	12	2067	c.1984C>T	c.(1984-1986)CTC>TTC	p.L662F		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	662						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGTCGGTGAGGATGTTGGGG	0.647													13	57					0	0	0.002450	0	0
FUT3	2525	broad.mit.edu	37	19	5844661	5844661	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:5844661G>A	uc002mdk.2	-	2	287	c.190C>T	c.(190-192)CTG>TTG	p.L64L	FUT3_uc002mdm.2_Silent_p.L64L|FUT3_uc002mdj.2_Silent_p.L64L|FUT3_uc002mdl.2_Silent_p.L64L|uc002mdn.2_5'Flank	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	64	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						AGCAGGATCAGGAGGGTGGGG	0.647													21	31					0	0	0.001882	0	0
RANBP3	8498	broad.mit.edu	37	19	5921218	5921218	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:5921218G>A	uc002mdw.2	-	14	1551	c.1324C>T	c.(1324-1326)CGA>TGA	p.R442*	RANBP3_uc002mdv.2_Nonsense_Mutation_p.R161*|RANBP3_uc002mdx.2_Nonsense_Mutation_p.R437*|RANBP3_uc002mdy.2_Nonsense_Mutation_p.R374*|RANBP3_uc002mdz.2_Nonsense_Mutation_p.R369*|RANBP3_uc010duq.2_Nonsense_Mutation_p.R347*|RANBP3_uc002mea.2_Nonsense_Mutation_p.R309*|RANBP3_uc010xix.1_Nonsense_Mutation_p.R314*	NM_007322	NP_015561	Q9H6Z4	RANB3_HUMAN	RAN binding protein 3 isoform RANBP3-d	442	RanBD1.				intracellular transport|protein transport	cytoplasm|nucleus	Ran GTPase binding			breast(1)	1						TCACCTAGTCGGGACTGTAGT	0.617													10	30					0	0	0.001855	0	0
C3	718	broad.mit.edu	37	19	6679196	6679196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:6679196C>T	uc002mfm.2	-	38	4632	c.4570G>A	c.(4570-4572)GAT>AAT	p.D1524N	C3_uc002mfl.2_Missense_Mutation_p.D260N	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1524	NTR.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ACCTTGTCATCCGACTTTTGT	0.572													4	36					0	0	0.000248	0	0
EMR1	2015	broad.mit.edu	37	19	6924760	6924760	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:6924760C>T	uc002mfw.2	+	15	1901	c.1863C>T	c.(1861-1863)ATC>ATT	p.I621I	EMR1_uc010dvc.2_Intron|EMR1_uc010dvb.2_Silent_p.I569I|EMR1_uc010xji.1_Silent_p.I480I|EMR1_uc010xjj.1_Silent_p.I444I	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	621	Helical; Name=1; (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TCTTGGCCATCGCCACCTTTC	0.522													19	42					0	0	0.001216	0	0
KIAA1543	57662	broad.mit.edu	37	19	7670259	7670259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:7670259C>T	uc002mgv.3	+	2	397	c.296C>T	c.(295-297)CCC>CTC	p.P99L	KIAA1543_uc002mgu.3_Missense_Mutation_p.P99L	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	99					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GAAACACCCCCCAACCCCTCT	0.692													25	30					0	0	0.004656	0	0
ZNF558	148156	broad.mit.edu	37	19	8922239	8922239	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:8922239C>T	uc002mkn.1	-	6	1157	c.927G>A	c.(925-927)CAG>CAA	p.Q309Q	ZNF558_uc010xkh.1_Silent_p.Q238Q|ZNF558_uc010dwg.1_Silent_p.Q309Q	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	309	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						TTCTTACGTGCTGTGTCAGAT	0.438													14	50					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	8994429	8994429	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:8994429G>A	uc002mkp.2	-	64	41667	c.41463C>T	c.(41461-41463)GTC>GTT	p.V13821V	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.V638V|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13824	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCCCTGAAGGACCCTCTCTG	0.537													24	130					0	0	0.003330	0	0
MUC16	94025	broad.mit.edu	37	19	8997151	8997151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:8997151G>A	uc002mkp.2	-	60	41249	c.41045C>T	c.(41044-41046)CCT>CTT	p.P13682L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.P499L|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13684	Extracellular (Potential).|SEA 11.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAGTACAGAGGGCCAACACT	0.552													16	45					0	0	0.001523	0	0
MUC16	94025	broad.mit.edu	37	19	9046048	9046048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9046048C>T	uc002mkp.2	-	5	35787	c.35583G>A	c.(35581-35583)ATG>ATA	p.M11861I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11863	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGTTGGAATCATTGTGCTGG	0.493													18	92					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9046526	9046526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9046526G>A	uc002mkp.2	-	5	35309	c.35105C>T	c.(35104-35106)TCC>TTC	p.S11702F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11704	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTTGTTCTGGAAACAGGTGT	0.507													18	67					0	0	0.001216	0	0
MUC16	94025	broad.mit.edu	37	19	9048749	9048749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9048749G>A	uc002mkp.2	-	5	33086	c.32882C>T	c.(32881-32883)ACC>ATC	p.T10961I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10963	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAAGGTGTGGTCTCTGGTTC	0.502													11	70					0	0	0.000978	0	0
MUC16	94025	broad.mit.edu	37	19	9067634	9067634	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9067634C>T	uc002mkp.2	-	3	20016	c.19812G>A	c.(19810-19812)AAG>AAA	p.K6604K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6606	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATAAGATTCCTTTTCAGAAG	0.423													36	106					0	0	0.002222	0	0
MUC16	94025	broad.mit.edu	37	19	9069682	9069682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9069682C>T	uc002mkp.2	-	3	17968	c.17764G>A	c.(17764-17766)GAA>AAA	p.E5922K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5924	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGTTTCTTCCACAGAGGGA	0.493													12	50					0	0	0.000978	0	0
MUC16	94025	broad.mit.edu	37	19	9074913	9074913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9074913G>A	uc002mkp.2	-	3	12737	c.12533C>T	c.(12532-12534)TCA>TTA	p.S4178L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4180	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGCCCTTGTGATGTCAACAA	0.517													15	58					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9082925	9082925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9082925C>T	uc002mkp.2	-	1	9094	c.8890G>A	c.(8890-8892)GGA>AGA	p.G2964R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2965	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGCAGATCCCTCAGGGGTT	0.502													38	55					0	0	0.005524	0	0
MUC16	94025	broad.mit.edu	37	19	9088751	9088751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9088751G>A	uc002mkp.2	-	1	3268	c.3064C>T	c.(3064-3066)CTC>TTC	p.L1022F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1022	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGTTGTGAGGATGGTTGTT	0.468													33	156					0	0	0.002836	0	0
MUC16	94025	broad.mit.edu	37	19	9090523	9090523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9090523C>T	uc002mkp.2	-	1	1496	c.1292G>A	c.(1291-1293)GGA>GAA	p.G431E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	431	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTCAAAGTTCCTTCTGTTTC	0.493													23	79					0	0	0.003954	0	0
ZNF317	57693	broad.mit.edu	37	19	9271287	9271287	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9271287C>T	uc002mku.2	+	7	1241	c.966C>T	c.(964-966)ATC>ATT	p.I322I	ZNF317_uc002mkv.2_Silent_p.I181I|ZNF317_uc002mkw.2_Silent_p.I290I|ZNF317_uc002mkx.2_Silent_p.I237I|ZNF317_uc002mky.2_Silent_p.I205I	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	322	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCACCTCATCGCACACAAGA	0.587													7	59					0	0	0.004482	0	0
OR7D2	162998	broad.mit.edu	37	19	9297116	9297116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9297116G>A	uc002mkz.1	+	1	847	c.659G>A	c.(658-660)CGA>CAA	p.R220Q		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	220	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TCTTATTCACGAATTGCTTCA	0.463													31	43					0	0	0.002096	0	0
OR7E24	26648	broad.mit.edu	37	19	9362401	9362401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9362401C>T	uc002mlb.1	+	1	682	c.682C>T	c.(682-684)CCT>TCT	p.P228S		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	228	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGGCTGTCTCCCTATCTCAGG	0.438													6	29					0	0	0.001984	0	0
ZNF559	84527	broad.mit.edu	37	19	9453434	9453434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9453434C>T	uc002mlg.2	+	7	1954	c.1307C>T	c.(1306-1308)CCT>CTT	p.P436L	ZNF559_uc002mlf.2_Missense_Mutation_p.P205L|ZNF559_uc010dwl.1_Missense_Mutation_p.P205L|ZNF559_uc010xkn.1_Missense_Mutation_p.P428L|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Missense_Mutation_p.P500L|ZNF559_uc010dwk.1_Missense_Mutation_p.P205L|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	436					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCAGAAAGGCCTTTTGAATGT	0.418													18	35					0	0	0.000958	0	0
ZNF560	147741	broad.mit.edu	37	19	9577333	9577333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9577333C>T	uc002mlp.1	-	10	2500	c.2290G>A	c.(2290-2292)GGA>AGA	p.G764R	ZNF560_uc010dwr.1_Missense_Mutation_p.G658R	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	764					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						GGTTTCTCTCCCATATGAGTT	0.443													9	51					0	0	0.004482	0	0
ZNF560	147741	broad.mit.edu	37	19	9581123	9581123	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9581123C>T	uc002mlp.1	-	7	603	c.393G>A	c.(391-393)CAG>CAA	p.Q131Q	ZNF560_uc010dwr.1_Silent_p.Q25Q	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	131	KRAB 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						ACAGGTTTCTCTGAGCTGGGT	0.478													17	63					0	0	0.004990	0	0
ZNF426	79088	broad.mit.edu	37	19	9640026	9640026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9640026G>A	uc002mlq.2	-	8	959	c.695C>T	c.(694-696)TCC>TTC	p.S232F	ZNF426_uc010dws.2_Missense_Mutation_p.S194F	NM_024106	NP_077011	Q9BUY5	ZN426_HUMAN	zinc finger protein 426	232	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATTAATGAAGGATTTTCCACA	0.368													57	98					0	0	0.003610	0	0
PIN1	5300	broad.mit.edu	37	19	9949200	9949200	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9949200G>A	uc002mml.1	+	2	169	c.147G>A	c.(145-147)CAG>CAA	p.Q49Q	PIN1_uc002mmk.1_Silent_p.Q49Q|PIN1_uc002mmm.1_Silent_p.Q49Q|PIN1_uc002mmn.1_RNA	NM_006221	NP_006212	Q13526	PIN1_HUMAN	protein (peptidyl-prolyl cis/trans isomerase)	49					cell cycle|negative regulation of cell motility|negative regulation of ERK1 and ERK2 cascade|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of type I interferon production|positive regulation of Rho GTPase activity|positive regulation of ubiquitin-protein ligase activity|protein folding|regulation of mitosis|regulation of pathway-restricted SMAD protein phosphorylation	nucleoplasm	GTPase activating protein binding|mitogen-activated protein kinase kinase binding|peptidyl-prolyl cis-trans isomerase activity|phosphoserine binding|phosphothreonine binding			skin(1)	1						AAAACGGGCAGGGGGAGCCTG	0.662													7	11					0	0	0.001984	0	0
OLFM2	93145	broad.mit.edu	37	19	9967558	9967558	+	Silent	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:9967558G>C	uc002mmp.2	-	5	640	c.612C>G	c.(610-612)CCC>CCG	p.P204P	OLFM2_uc002mmo.2_Silent_p.P126P	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	204	Olfactomedin-like.					extracellular region				large_intestine(1)|skin(1)	2						GAACGGTGATGGGGTTACTGA	0.637													4	9					0	0	0.001168	0	0
COL5A3	50509	broad.mit.edu	37	19	10099813	10099813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:10099813G>A	uc002mmq.1	-	27	2218	c.2132C>T	c.(2131-2133)CCT>CTT	p.P711L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	711	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CACTCCCCGAGGTCCAGGATA	0.542													36	37					0	0	0.002852	0	0
COL5A3	50509	broad.mit.edu	37	19	10100192	10100192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:10100192G>A	uc002mmq.1	-	25	2085	c.1999C>T	c.(1999-2001)CCT>TCT	p.P667S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	667	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGGTTTCCAGGGGGACCCTGA	0.572													7	27					0	0	0.003080	0	0
CDC37	11140	broad.mit.edu	37	19	10502334	10502334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:10502334G>A	uc002mof.1	-	8	1146	c.1030C>T	c.(1030-1032)CCC>TCC	p.P344S	CDC37_uc002moe.1_Missense_Mutation_p.P299S|CDC37_uc010dxf.1_Missense_Mutation_p.P181S|CDC37_uc002mog.1_Missense_Mutation_p.P255S|CDC37_uc002moh.2_Missense_Mutation_p.P334S	NM_007065	NP_008996	Q16543	CDC37_HUMAN	cell division cycle 37 protein	344					protein targeting|regulation of cyclin-dependent protein kinase activity|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway		unfolded protein binding				0			OV - Ovarian serous cystadenocarcinoma(20;4.65e-10)|Epithelial(33;6.48e-07)|all cancers(31;2.31e-06)	GBM - Glioblastoma multiforme(1328;0.0318)		TTAGAGTTGGGGACCCAGAGG	0.627											OREG0025234	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	47					0	0	0.002450	0	0
KRI1	65095	broad.mit.edu	37	19	10664854	10664854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:10664854G>A	uc002moy.1	-	19	1912	c.1903C>T	c.(1903-1905)CCC>TCC	p.P635S	KRI1_uc002mow.1_Missense_Mutation_p.P254S|KRI1_uc002mox.1_Missense_Mutation_p.P631S	NM_023008	NP_075384	Q8N9T8	KRI1_HUMAN	KRI1 homolog	635										ovary(1)	1			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			TGTGCTGGGGGACTCTCCGGC	0.647													20	69					0	0	0.001523	0	0
QTRT1	81890	broad.mit.edu	37	19	10823442	10823442	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:10823442C>T	uc002mpr.2	+	8	895	c.870C>T	c.(868-870)GGC>GGT	p.G290G	DNM2_uc010dxk.2_5'Flank	NM_031209	NP_112486	Q9BXR0	TGT_HUMAN	queuine tRNA-ribosyltransferase 1	290					queuosine biosynthetic process	mitochondrion|nucleus|ribosome	metal ion binding|queuine tRNA-ribosyltransferase activity			skin(1)	1			Epithelial(33;1.55e-05)|all cancers(31;3.42e-05)			AGCGCTTTGGCTCTGCCCTGG	0.632													49	72					0	0	0.003610	0	0
TSPAN16	26526	broad.mit.edu	37	19	11411966	11411966	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:11411966G>A	uc002mqv.1	+	4	582	c.432G>A	c.(430-432)TGG>TGA	p.W144*	TSPAN16_uc002mqu.1_RNA|uc002mqw.1_Intron	NM_012466	NP_036598	Q9UKR8	TSN16_HUMAN	transmembrane 4 superfamily member 16	144	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						CTACACAGTGGAACTTGGTCA	0.368													26	36					0	0	0.001271	0	0
TMEM205	374882	broad.mit.edu	37	19	11453514	11453514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:11453514C>T	uc002mrb.2	-	4	735	c.547G>A	c.(547-549)GCC>ACC	p.A183T	TMEM205_uc002mra.2_Missense_Mutation_p.A183T|TMEM205_uc002mqz.2_Missense_Mutation_p.A183T|TMEM205_uc002mrc.2_Missense_Mutation_p.A183T	NM_001145416	NP_001138888	Q6UW68	TM205_HUMAN	transmembrane protein 205	183	Helical; (Potential).					integral to membrane					0						ATTTCCAGGGCAAGGCCAGCG	0.527													22	130					0	0	0.003954	0	0
SYCE2	256126	broad.mit.edu	37	19	13011463	13011463	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:13011463C>T	uc002mvr.2	-	4	322	c.307_splice	c.e4-1	p.V103_splice		NM_001105578	NP_001099048	Q6PIF2	SYCE2_HUMAN	synaptonemal complex central element protein 2						cell division	central element					0						GATCCGAAACCTGTTAAACAA	0.363													12	62					0	0	0.001368	0	0
TRMT1	55621	broad.mit.edu	37	19	13226254	13226254	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:13226254C>T	uc002mwj.2	-	4	730	c.480G>A	c.(478-480)CTG>CTA	p.L160L	NACC1_uc002mwm.2_5'Flank|TRMT1_uc002mwk.2_Silent_p.L160L|TRMT1_uc002mwl.3_Silent_p.L160L|TRMT1_uc010xmz.1_5'UTR	NM_017722	NP_060192	Q9NXH9	TRM1_HUMAN	tRNA methyltransferase 1 isoform 1	160							RNA binding|tRNA (guanine-N2-)-methyltransferase activity|zinc ion binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.08e-22)	GBM - Glioblastoma multiforme(1328;0.0356)		CTGAAGCTGCCAGGCCTTCCA	0.582													8	19					0	0	0.003080	0	0
ASF1B	55723	broad.mit.edu	37	19	14231322	14231322	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:14231322G>A	uc002mye.2	-	4	730	c.558C>T	c.(556-558)CTC>CTT	p.L186L	PRKACA_uc002myc.2_5'Flank	NM_018154	NP_060624	Q9NVP2	ASF1B_HUMAN	anti-silencing function 1B	186					cell differentiation|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus					0						TGCAGCCAGGGAGCCCCAAGC	0.637													5	34					0	0	0.000602	0	0
SLC1A6	6511	broad.mit.edu	37	19	15083648	15083648	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:15083648C>T	uc002naa.1	-	1	83	c.75G>A	c.(73-75)CGG>CGA	p.R25R	SLC1A6_uc010dzu.1_Silent_p.R25R|SLC1A6_uc010xod.1_Missense_Mutation_p.A30T|SLC1A6_uc002nab.2_Silent_p.R25R|SLC1A6_uc002nac.2_Silent_p.R25R|SLC1A6_uc002nad.1_Silent_p.R25R	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	25	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	TTTCCTGCAGCCGCTGCAGCC	0.667													4	8					0	0	0.000248	0	0
CASP14	23581	broad.mit.edu	37	19	15164592	15164592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:15164592G>A	uc010dzv.1	+	4	534	c.226G>A	c.(226-228)GAA>AAA	p.E76K	CASP14_uc002naf.2_Missense_Mutation_p.E76K	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	76					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						CGATTCCCGGGAAGATCCCGT	0.542													35	44					0	0	0.001287	0	0
EPHX3	79852	broad.mit.edu	37	19	15338587	15338587	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:15338587G>A	uc002nap.2	-	6	1061	c.852C>T	c.(850-852)CTC>CTT	p.L284L	EPHX3_uc002naq.2_Silent_p.L284L	NM_024794	NP_079070	Q9H6B9	EPHX3_HUMAN	abhydrolase domain containing 9 precursor	284						extracellular region	hydrolase activity				0						CTCACCTGAAGAGGTTTCGGT	0.502													9	12					0	0	0.000443	0	0
AKAP8	10270	broad.mit.edu	37	19	15483046	15483046	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:15483046C>A	uc002nav.2	-	6	1035	c.974G>T	c.(973-975)GGA>GTA	p.G325V	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_Missense_Mutation_p.G139V	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	325					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						GGAGAAATCTCCTTCACTGTC	0.592													13	57					9.31168e-06	1.81754e-05	0.001855	1	0
OR10H1	26539	broad.mit.edu	37	19	15918298	15918298	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:15918298G>A	uc002nbq.2	-	1	639	c.550C>T	c.(550-552)CTG>TTG	p.L184L		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AACTTCAACAGAGGTGGCACA	0.572													12	59					0	0	0.000978	0	0
JAK3	3718	broad.mit.edu	37	19	17937601	17937601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:17937601G>A	uc002nhn.3	-	24	3426	c.3326C>T	c.(3325-3327)GCC>GTC	p.A1109V	JAK3_uc010ebh.2_Intron	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	1109	Protein kinase 2.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						AGCAGTGAAGGCATGAGTCTC	0.507		2	Mis		acute megakaryocytic leukemia|								32	51					0	0	0.002836	0	0
SLC5A5	6528	broad.mit.edu	37	19	18004596	18004596	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:18004596C>T	uc002nhr.3	+	15	2189	c.1842C>T	c.(1840-1842)TTC>TTT	p.F614F		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	614	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GTCTGTTTTTCTTGGGGCAGA	0.577													5	8					0	0	0.000602	0	0
GDF15	9518	broad.mit.edu	37	19	18499399	18499399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:18499399G>A	uc002niv.2	+	2	613	c.581G>A	c.(580-582)AGA>AAA	p.R194K		NM_004864	NP_004855	Q99988	GDF15_HUMAN	growth differentiation factor 15	194					cell-cell signaling|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			central_nervous_system(1)	1						GGGCGCCGCAGAGCGCGTGCG	0.731											OREG0025363	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	11					0	0	0.000248	0	0
ARMC6	93436	broad.mit.edu	37	19	19165050	19165050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:19165050G>A	uc002nld.2	+	6	1291	c.943G>A	c.(943-945)GAC>AAC	p.D315N	ARMC6_uc002nlc.2_Missense_Mutation_p.D290N|ARMC6_uc010xql.1_Missense_Mutation_p.D222N|ARMC6_uc002nle.2_Missense_Mutation_p.D290N|ARMC6_uc010xqm.1_Missense_Mutation_p.D315N	NM_033415	NP_219483	Q6NXE6	ARMC6_HUMAN	armadillo repeat containing 6	315	ARM 2.						protein binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.66e-06)|Epithelial(12;0.000391)			GGAGGTCGTCGACCTCGGGGG	0.627											OREG0025376	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	48					0	0	0.000443	0	0
NCAN	1463	broad.mit.edu	37	19	19334892	19334892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:19334892G>A	uc002nlz.2	+	4	637	c.538G>A	c.(538-540)GAG>AAG	p.E180K	NCAN_uc010ecc.1_5'Flank	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	180	Link 1.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			TGAGGCCCAGGAGGCCTGCCG	0.592													16	55					0	0	0.004990	0	0
NCAN	1463	broad.mit.edu	37	19	19338311	19338311	+	Missense_Mutation	SNP	C	T	T	rs138659174		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:19338311C>T	uc002nlz.2	+	8	1981	c.1882C>T	c.(1882-1884)CCA>TCA	p.P628S	NCAN_uc010ecc.1_Missense_Mutation_p.P192S	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	628					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GGCCACCTCCCCAGATCTCCC	0.632													27	29					0	0	0.001271	0	0
NCAN	1463	broad.mit.edu	37	19	19349202	19349202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:19349202G>A	uc002nlz.2	+	11	3490	c.3391G>A	c.(3391-3393)GAA>AAA	p.E1131K	NCAN_uc010ecc.1_Missense_Mutation_p.E695K|NCAN_uc002nma.2_5'Flank	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1131	C-type lectin.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CTCACCGGAGGAACACAGCTT	0.637													40	67					0	0	0.003214	0	0
CILP2	148113	broad.mit.edu	37	19	19654632	19654632	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:19654632C>T	uc002nmv.3	+	8	1363	c.1278C>T	c.(1276-1278)TCC>TCT	p.S426S	CILP2_uc002nmw.3_Silent_p.S432S	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	426						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TGGCAGGCTCCAGCCCCCGCT	0.672													9	35					0	0	0.004482	0	0
ZNF253	56242	broad.mit.edu	37	19	20002699	20002699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:20002699C>T	uc002noj.2	+	4	735	c.643C>T	c.(643-645)CTT>TTT	p.L215F	ZNF253_uc002nok.2_Missense_Mutation_p.L139F|ZNF253_uc002nol.2_RNA	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	215	C2H2-type 2.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATCTGCAAACCTTACTACACA	0.388													12	27					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	19	20959256	20959256	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:20959256G>A	uc002npe.2	+	1		c.147G>A								Homo sapiens zinc finger protein 66, mRNA (cDNA clone MGC:87430 IMAGE:5270688), complete cds.																		GCCTAGAAATGGTGAGAGTGC	0.592													8	42					0	0	0.000443	0	0
ZNF430	80264	broad.mit.edu	37	19	21239688	21239688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:21239688C>T	uc002npj.2	+	5	684	c.574C>T	c.(574-576)CCA>TCA	p.P192S	ZNF430_uc002npk.2_Missense_Mutation_p.P191S	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	192					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						ATTTTCAAATCCAAATATACA	0.284													6	24					0	0	0.001168	0	0
ZNF43	7594	broad.mit.edu	37	19	22002001	22002001	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:22002001A>G	uc002nqj.2	-	2	156	c.26T>C	c.(25-27)GTG>GCG	p.V9A	ZNF43_uc010ecv.2_Missense_Mutation_p.V3A|ZNF43_uc002nql.2_Missense_Mutation_p.V3A|ZNF43_uc002nqm.2_Missense_Mutation_p.V3A|ZNF43_uc002nqk.2_Intron	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	9	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TTCTATGGCCACATCCATAAA	0.398													23	57					0	0	0.002299	0	0
ZNF676	163223	broad.mit.edu	37	19	22362851	22362851	+	Silent	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:22362851A>T	uc002nqs.1	-	3	1986	c.1668T>A	c.(1666-1668)ACT>ACA	p.T556T		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	556					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				GTTTCTCTCCAGTATGAATTC	0.373													8	34					0	0	0.000443	0	0
ZNF98	148198	broad.mit.edu	37	19	22574947	22574947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:22574947G>A	uc002nqt.2	-	4	1212	c.1090C>T	c.(1090-1092)CAC>TAC	p.H364Y		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	364	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				GTAGTAAGGTGGGATAACCGG	0.383													11	13					0	0	0.001368	0	0
ZNF99	7652	broad.mit.edu	37	19	22940086	22940086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:22940086C>T	uc010xrh.1	-	6	2245	c.2245G>A	c.(2245-2247)GAA>AAA	p.E749K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CCACATTCTTCACATTTGTAG	0.358													18	26					0	0	0.006122	0	0
ZNF99	7652	broad.mit.edu	37	19	22941440	22941440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:22941440G>A	uc010xrh.1	-	5	998	c.998C>T	c.(997-999)CCC>CTC	p.P333L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ACATTTGCAGGGTTTCTCTGC	0.373													13	30					0	0	0.001855	0	0
ZNF91	7644	broad.mit.edu	37	19	23542804	23542804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:23542804G>A	uc002nre.2	-	4	3090	c.2977C>T	c.(2977-2979)CCC>TCC	p.P993S	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.P961S	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	993						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CATTTGTAGGGTTTCTCTCCA	0.388													6	52					0	0	0.001168	0	0
ZNF536	9745	broad.mit.edu	37	19	30934619	30934619	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:30934619C>T	uc002nsu.1	+	2	288	c.150C>T	c.(148-150)CTC>CTT	p.L50L	ZNF536_uc010edd.1_Silent_p.L50L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	50					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TCCCCGAGCTCCATCCCCGGC	0.672													11	49					0	0	0.001368	0	0
ZNF536	9745	broad.mit.edu	37	19	31040061	31040061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:31040061G>A	uc002nsu.1	+	4	3673	c.3535G>A	c.(3535-3537)GAT>AAT	p.D1179N	ZNF536_uc010edd.1_Missense_Mutation_p.D1179N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGAGAACAACGATGAAGAGGA	0.557													20	52					0	0	0.002299	0	0
ZNF536	9745	broad.mit.edu	37	19	31040070	31040070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:31040070G>A	uc002nsu.1	+	4	3682	c.3544G>A	c.(3544-3546)GAT>AAT	p.D1182N	ZNF536_uc010edd.1_Missense_Mutation_p.D1182N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CGATGAAGAGGATGTTGAAAC	0.557													18	60					0	0	0.001523	0	0
ANKRD27	84079	broad.mit.edu	37	19	33110260	33110260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:33110260G>A	uc002ntn.1	-	20	2069	c.1913C>T	c.(1912-1914)TCC>TTC	p.S638F		NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	638					early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					GGAGTCCACGGAGCGCTGCGG	0.612													22	38					0	0	0.003330	0	0
GPI	2821	broad.mit.edu	37	19	34857254	34857254	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:34857254A>G	uc002nvg.1	+	2	230	c.127A>G	c.(127-129)ACC>GCC	p.T43A	GPI_uc002nvf.2_Missense_Mutation_p.T82A|GPI_uc010xrv.1_Missense_Mutation_p.T82A|GPI_uc010xrw.1_Missense_Mutation_p.T43A|GPI_uc010edl.1_Missense_Mutation_p.T43A|GPI_uc002nvh.1_Missense_Mutation_p.T347A	NM_000175	NP_000166	P06744	G6PI_HUMAN	glucose phosphate isomerase	43					angiogenesis|gluconeogenesis|glycolysis|hemostasis|humoral immune response	cytosol|extracellular space|nucleus|plasma membrane	cytokine activity|glucose-6-phosphate isomerase activity|growth factor activity			ovary(1)|kidney(1)	2	Esophageal squamous(110;0.162)					CTGCAGCTTGACCCTCAACAC	0.552													24	74					0	0	0.005443	0	0
HPN	3249	broad.mit.edu	37	19	35551364	35551364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:35551364G>A	uc002nxq.1	+	9	813	c.568G>A	c.(568-570)GGA>AGA	p.G190R	HPN_uc002nxr.1_Missense_Mutation_p.G190R|HPN_uc002nxs.1_Intron|HPN_uc010xsh.1_Missense_Mutation_p.G159R|HPN_uc002nxt.1_Missense_Mutation_p.G74R|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	190	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	CCTCTGTGGGGGATCCCTGCT	0.677													15	66					0	0	0.001523	0	0
LSR	51599	broad.mit.edu	37	19	35757850	35757850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:35757850C>T	uc002nyl.2	+	8	1491	c.1268C>T	c.(1267-1269)CCC>CTC	p.P423L	LSR_uc002nym.2_Missense_Mutation_p.P404L|LSR_uc002nyn.2_Missense_Mutation_p.P355L|LSR_uc002nyo.2_Missense_Mutation_p.P403L|LSR_uc010xsr.1_Missense_Mutation_p.P315L|LSR_uc002nyp.2_Missense_Mutation_p.P365L|USF2_uc010xss.1_5'Flank|USF2_uc002nyq.1_5'Flank|USF2_uc002nyr.1_5'Flank|USF2_uc002nys.1_5'Flank|USF2_uc002nyt.1_5'Flank|USF2_uc002nyu.1_5'Flank|USF2_uc002nyv.1_5'Flank	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	423	Cytoplasmic (Potential).				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			CCTGGCCCCCCCAGTGGCCGT	0.622													10	25					0	0	0.000978	0	0
ETV2	2116	broad.mit.edu	37	19	36134494	36134494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:36134494C>T	uc002oas.2	+	4	1077	c.638C>T	c.(637-639)CCC>CTC	p.P213L	ETV2_uc002oar.2_Missense_Mutation_p.P185L|ETV2_uc002oat.2_Missense_Mutation_p.P92L|ETV2_uc002oau.2_Intron	NM_014209	NP_055024	O00321	ETV2_HUMAN	ets variant gene 2	184							sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			Tggggcgggcccgcgggcccg	0.577													3	4					0	0	0.004672	0	0
MLL4	9757	broad.mit.edu	37	19	36210760	36210760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:36210760C>T	uc010eei.2	+	3	511	c.511C>T	c.(511-513)CCT>TCT	p.P171S		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	171					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGATGTGGCTCCTACCCCCCC	0.632													15	53					0	0	0.002450	0	0
MLL4	9757	broad.mit.edu	37	19	36212370	36212370	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:36212370C>T	uc010eei.2	+	3	2121	c.2121C>T	c.(2119-2121)TTC>TTT	p.F707F		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	707	Pro-rich.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCCTCGATTCGCCCCTGTGG	0.662													6	19					0	0	0.001168	0	0
MLL4	9757	broad.mit.edu	37	19	36217254	36217254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:36217254G>A	uc010eei.2	+	15	4003	c.4003G>A	c.(4003-4005)GGA>AGA	p.G1335R		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1335	PHD-type 3.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ATATGAGAAAGGTGGGGACCG	0.557													14	29					0	0	0.004007	0	0
KIRREL2	84063	broad.mit.edu	37	19	36350386	36350386	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:36350386C>T	uc002ocb.3	+	5	738	c.526C>T	c.(526-528)CTG>TTG	p.L176L	KIRREL2_uc002obz.3_Silent_p.L176L|KIRREL2_uc002oca.3_Silent_p.L126L|KIRREL2_uc002occ.3_Silent_p.L123L|KIRREL2_uc002ocd.3_Silent_p.L173L	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	176	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCTCCAGACCCTGCTGAAGGA	0.398													16	24					0	0	0.004990	0	0
ALKBH6	84964	broad.mit.edu	37	19	36504285	36504285	+	Silent	SNP	G	A	A	rs148155004		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:36504285G>A	uc002oct.2	-	2	115	c.15C>T	c.(13-15)GAC>GAT	p.D5D	ALKBH6_uc002ocv.1_Silent_p.D33D|ALKBH6_uc002ocx.1_Translation_Start_Site|ALKBH6_uc002ocw.1_Silent_p.D33D|ALKBH6_uc010eeo.1_Silent_p.D5D|ALKBH6_uc010eep.1_Silent_p.D33D|uc002ocy.2_5'Flank	NM_032878	NP_116267	Q3KRA9	ALKB6_HUMAN	alkB, alkylation repair homolog 6 isoform 2	5						cytoplasm|nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0	all_lung(56;1.35e-06)|Lung NSC(56;2.15e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GGACTCTGGCGTCCTGCTCCT	0.572													44	53					0	0	0.003610	0	0
WDR62	284403	broad.mit.edu	37	19	36557283	36557283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:36557283C>T	uc002odc.2	+	5	606	c.515C>T	c.(514-516)TCC>TTC	p.S172F	WDR62_uc002odd.2_Missense_Mutation_p.S172F|WDR62_uc002odb.2_Missense_Mutation_p.S172F	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	172	WD 2.				cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CACATCGTGTCCATGGGCTAC	0.562													5	14					0	0	0.000602	0	0
ZNF382	84911	broad.mit.edu	37	19	37118051	37118051	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:37118051A>C	uc002oek.2	+	5	1365	c.1252A>C	c.(1252-1254)ATC>CTC	p.I418L	ZNF382_uc010efa.2_Missense_Mutation_p.I369L|ZNF382_uc010efb.2_Missense_Mutation_p.I417L|ZNF382_uc002oel.2_Missense_Mutation_p.I417L	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	418	Required for transcriptional repression activity; probably mediates sequence- specific DNA-binding (By similarity).|C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			GAAGGCATTTATCCAGAAGAC	0.448													22	37					0	0	0.004656	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643778	37643778	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:37643778G>A	uc002ofo.1	-	5	1254	c.1023C>T	c.(1021-1023)CTC>CTT	p.L341L	ZNF585A_uc002ofm.1_Silent_p.L286L|ZNF585A_uc002ofn.1_Silent_p.L286L	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	341	C2H2-type 7; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TATGTGTAACGAGGTTGGAAT	0.398													45	72					0	0	0.002852	0	0
ZNF585B	92285	broad.mit.edu	37	19	37676240	37676240	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:37676240C>T	uc002ofq.2	-	5	2453	c.2199G>A	c.(2197-2199)TTG>TTA	p.L733L	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Silent_p.L547L	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	733	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GATGTTTATTCAAATTGGACC	0.458													48	66					0	0	0.003610	0	0
ZNF527	84503	broad.mit.edu	37	19	37880761	37880761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:37880761C>T	uc010efk.1	+	5	1921	c.1810C>T	c.(1810-1812)CAT>TAT	p.H604Y	ZNF527_uc002ogf.3_Missense_Mutation_p.H572Y|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	604	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCAGAGAATTCATAATAGAGA	0.343													31	57					0	0	0.004289	0	0
RYR1	6261	broad.mit.edu	37	19	38934823	38934823	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:38934823C>T	uc002oit.2	+	6	589	c.459C>T	c.(457-459)TCC>TCT	p.S153S	RYR1_uc002oiu.2_Silent_p.S153S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	153	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACCCAGCCTCCAAGCAGAGGT	0.587													11	34					0	0	0.001855	0	0
RYR1	6261	broad.mit.edu	37	19	38959762	38959762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:38959762G>A	uc002oit.2	+	26	3668	c.3538G>A	c.(3538-3540)GAG>AAG	p.E1180K	RYR1_uc002oiu.2_Missense_Mutation_p.E1180K	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1180	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGCCTTCCGGGAGATTGAGAT	0.358													17	46					0	0	0.001882	0	0
MAP4K1	11184	broad.mit.edu	37	19	39096813	39096813	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:39096813C>T	uc002oix.1	-	17	1308	c.1200G>A	c.(1198-1200)AAG>AAA	p.K400K	MAP4K1_uc002oiw.1_5'UTR|MAP4K1_uc002oiy.1_Silent_p.K400K|MAP4K1_uc010xug.1_Silent_p.K62K	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	400					activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			AGGGCCTTACCTTGGGGGGAA	0.642													7	16					0	0	0.000443	0	0
CAPN12	147968	broad.mit.edu	37	19	39230812	39230812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:39230812G>A	uc002ojd.1	-	5	917	c.608C>T	c.(607-609)GCT>GTT	p.A203V		NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	203	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			ATCCACAAAAGCCTCATTCAT	0.607													5	13					0	0	0.000602	0	0
LGALS4	3960	broad.mit.edu	37	19	39294190	39294190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:39294190G>A	uc002ojg.2	-	7	756	c.542C>T	c.(541-543)ACC>ATC	p.T181I	LGALS4_uc010xuj.1_3'UTR	NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	181					cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			TCCTTCCATGGTCTGTGAAGT	0.522													16	45					0	0	0.006122	0	0
NCCRP1	342897	broad.mit.edu	37	19	39691002	39691002	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:39691002C>T	uc002okq.1	+	5	584	c.565C>T	c.(565-567)CTG>TTG	p.L189L		NM_001001414	NP_001001414	Q6ZVX7	NCRP1_HUMAN	non-specific cytotoxic cell receptor protein 1	189	FBA.				protein catabolic process					ovary(1)	1						GGACAGCCGGCTGGATGCGTG	0.632													25	108					0	0	0.002445	0	0
FCGBP	8857	broad.mit.edu	37	19	40364281	40364281	+	Silent	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:40364281T>A	uc002omp.3	-	31	14369	c.14361A>T	c.(14359-14361)GTA>GTT	p.V4787V		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4787	TIL 11.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCCCACGGGTACGCAGGTGT	0.657													17	34					0	0	0.001882	0	0
FCGBP	8857	broad.mit.edu	37	19	40368805	40368805	+	Silent	SNP	C	T	T	rs140207614		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:40368805C>T	uc002omp.3	-	28	12551	c.12543G>A	c.(12541-12543)TCG>TCA	p.S4181S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4181	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCAGTGCCTTCGATGCACCCT	0.622													50	185					0	0	0.003610	0	0
SPTBN4	57731	broad.mit.edu	37	19	41025348	41025348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:41025348G>A	uc002ony.2	+	16	3030	c.2944G>A	c.(2944-2946)GAA>AAA	p.E982K	SPTBN4_uc002onx.2_Missense_Mutation_p.E982K|SPTBN4_uc002onz.2_Missense_Mutation_p.E982K|SPTBN4_uc010egx.2_5'UTR	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	982	Spectrin 7.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GCGCAAAGAGGAAATGAGCGC	0.607													15	17					0	0	0.004007	0	0
CYP2A7	1549	broad.mit.edu	37	19	41386441	41386441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:41386441C>T	uc002opm.2	-	3	978	c.436G>A	c.(436-438)GAG>AAG	p.E146K	CYP2A7_uc002opo.2_Missense_Mutation_p.E146K|CYP2A7_uc002opn.2_Missense_Mutation_p.E95K	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	146						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			ATGCGCTCCTCGATGCCTCGC	0.662													25	23					0	0	0.001061	0	0
CYP2A13	1553	broad.mit.edu	37	19	41601812	41601812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:41601812C>T	uc002opt.2	+	9	1460	c.1451C>T	c.(1450-1452)CCA>CTA	p.P484L		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	484					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	GCCACGATCCCACGAAACTAC	0.363													25	66					0	0	0.004656	0	0
AXL	558	broad.mit.edu	37	19	41745213	41745213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:41745213C>T	uc010ehj.2	+	9	1469	c.1279C>T	c.(1279-1281)CGC>TGC	p.R427C	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.R427C|AXL_uc010ehk.2_Missense_Mutation_p.R427C	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	427	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GGAGGCCTGGCGCCCAGGTAA	0.592													13	48					0	0	0.001855	0	0
AXL	558	broad.mit.edu	37	19	41758763	41758763	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:41758763A>C	uc010ehj.2	+	16	2007	c.1817A>C	c.(1816-1818)CAG>CCG	p.Q606P	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Missense_Mutation_p.Q597P	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	606	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GTCTGTTTCCAGGGTTCTGAA	0.592													18	72					0	0	0.001523	0	0
CEACAM3	1084	broad.mit.edu	37	19	42301775	42301775	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:42301775C>T	uc002orn.1	+	2	395	c.319C>T	c.(319-321)CTG>TTG	p.L107L	CEACAM3_uc010eia.1_Silent_p.L107L|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	107	Ig-like V-type.|Extracellular (Potential).					integral to membrane				skin(1)	1						CAATGCATCCCTGCTGATCCA	0.453													43	149					0	0	0.001706	0	0
POU2F2	5452	broad.mit.edu	37	19	42596305	42596305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:42596305G>A	uc002osp.2	-	13	1383	c.1316C>T	c.(1315-1317)CCC>CTC	p.P439L	POU2F2_uc002osn.2_Missense_Mutation_p.P423L|POU2F2_uc002oso.2_Missense_Mutation_p.P212L|POU2F2_uc002osq.2_Intron|POU2F2_uc002osr.1_Missense_Mutation_p.P439L	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	439					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				GGTGGCCGGGGGTGGGGGAGT	0.567													11	13					0	0	0.001368	0	0
MEGF8	1954	broad.mit.edu	37	19	42862990	42862990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:42862990C>T	uc002otl.3	+	29	5661	c.5026C>T	c.(5026-5028)CCT>TCT	p.P1676S	MEGF8_uc002otm.3_Missense_Mutation_p.P1284S	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1743	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GGGCCAAGTTCCTGGGGAGCA	0.597													4	14					0	0	0.000602	0	0
LIPE	3991	broad.mit.edu	37	19	42931147	42931147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:42931147G>A	uc002otr.2	-	1	432	c.155C>T	c.(154-156)GCT>GTT	p.A52V	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|LIPE_uc002ots.1_5'Flank	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	52					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				TTGGTTTGAAGCAGGCTTCTG	0.532													27	89					0	0	0.005443	0	0
PSG2	5670	broad.mit.edu	37	19	43579633	43579633	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:43579633C>T	uc002ovr.2	-	3	675	c.582G>A	c.(580-582)CAG>CAA	p.Q194Q	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Silent_p.Q194Q|PSG2_uc010eiq.1_Silent_p.Q194Q|PSG2_uc002ovs.3_Silent_p.Q194Q|PSG2_uc002ovt.3_Silent_p.Q194Q	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	194	Ig-like C2-type 1.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				TTTCGGACAGCTGAAACCTAT	0.493													91	157					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43773533	43773533	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:43773533C>T	uc002owd.3	-	1	150	c.51G>A	c.(49-51)GGG>GGA	p.G17G	PSG9_uc002owe.3_Silent_p.G17G|PSG9_uc010xwm.1_Silent_p.G17G|PSG9_uc002owf.3_Silent_p.G17G|PSG9_uc002owg.2_Silent_p.G17G|PSG9_uc002owh.2_Silent_p.G17G	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	17					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGAGCAGGAGCCCCTTCCAGG	0.602													33	63					0	0	0.002522	0	0
PSG9	5678	broad.mit.edu	37	19	43773535	43773535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:43773535C>T	uc002owd.3	-	1	148	c.49G>A	c.(49-51)GGG>AGG	p.G17R	PSG9_uc002owe.3_Missense_Mutation_p.G17R|PSG9_uc010xwm.1_Missense_Mutation_p.G17R|PSG9_uc002owf.3_Missense_Mutation_p.G17R|PSG9_uc002owg.2_Missense_Mutation_p.G17R|PSG9_uc002owh.2_Missense_Mutation_p.G17R	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	17					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGCAGGAGCCCCTTCCAGGTG	0.607													34	64					0	0	0.002852	0	0
ETHE1	23474	broad.mit.edu	37	19	44015617	44015618	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:44015617_44015618AC>CT	uc002owp.2	-	4	543_544	c.476_477GT>AG	c.(475-477)CGT>CAG	p.R159Q	ETHE1_uc010eiu.1_Missense_Mutation_p.R159Q	NM_014297	NP_055112	O95571	ETHE1_HUMAN	ETHE1 protein precursor	159						mitochondrial matrix|nucleus	hydrolase activity|metal ion binding				0		Prostate(69;0.0153)				GCCCACACCCACGGATCAACAG	0.55													7	52					0	0	0.004672	0	0
ZNF235	9310	broad.mit.edu	37	19	44791542	44791542	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:44791542G>A	uc002oza.3	-	5	2149	c.2046C>T	c.(2044-2046)CCC>CCT	p.P682P	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Silent_p.P678P|ZNF235_uc010xwx.1_Silent_p.P596P	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	682					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				GACACGTATAGGGTTTCTCTC	0.493													13	27					0	0	0.001855	0	0
DMWD	1762	broad.mit.edu	37	19	46289452	46289452	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:46289452C>T	uc002pdj.1	-	3	1348	c.1302G>A	c.(1300-1302)GCG>GCA	p.A434A	DMWD_uc002pdk.1_Silent_p.A434A|DMWD_uc010eko.1_Silent_p.A119A	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	434	WD 4.				meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		TGTCCTGGCCCGCCGAGCCAA	0.706													5	7					0	0	0.000602	0	0
MYPOP	339344	broad.mit.edu	37	19	46393958	46393958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:46393958G>A	uc002pdt.2	-	3	1210	c.1123C>T	c.(1123-1125)CCG>TCG	p.P375S		NM_001012643	NP_001012661	Q86VE0	MYPOP_HUMAN	Myb protein P42POP	375	Pro-rich.					nucleus	DNA binding				0						GAGTCGTGCGGAGGGAGCGGG	0.647													4	15					0	0	0.000602	0	0
HIF3A	64344	broad.mit.edu	37	19	46825223	46825223	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:46825223G>A	uc002peh.2	+	10	1364	c.1335G>A	c.(1333-1335)TCG>TCA	p.S445S	HIF3A_uc002peg.3_Silent_p.S445S|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Silent_p.S389S|HIF3A_uc002pej.1_Silent_p.S376S|HIF3A_uc002pek.2_Silent_p.S389S|HIF3A_uc010xxy.1_Silent_p.S376S|HIF3A_uc002pel.2_Silent_p.S443S|HIF3A_uc010xxz.1_Silent_p.S394S	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	445					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GTCCTCTTTCGGTAAGCCATC	0.572													8	18					0	0	0.000443	0	0
PPP5C	5536	broad.mit.edu	37	19	46878977	46878977	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:46878977C>T	uc002pem.2	+	3	540	c.480C>T	c.(478-480)TCC>TCT	p.S160S	PPP5C_uc010xya.1_Silent_p.S27S|PPP5C_uc002pen.2_Silent_p.S160S	NM_006247	NP_006238	P53041	PPP5_HUMAN	protein phosphatase 5, catalytic subunit	160					mitosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein dephosphorylation|transcription, DNA-dependent	Golgi apparatus|nucleus	metal ion binding|protein binding|protein serine/threonine phosphatase activity|signal transducer activity			lung(1)|pancreas(1)	2		Ovarian(192;0.0731)|all_neural(266;0.196)		OV - Ovarian serous cystadenocarcinoma(262;0.000196)|all cancers(93;0.00192)|GBM - Glioblastoma multiforme(486;0.0499)|Epithelial(262;0.0504)		ACAAGCGCTCCGTGGTGGACT	0.587													8	5					0	0	0.004482	0	0
PTGIR	5739	broad.mit.edu	37	19	47124583	47124583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:47124583C>T	uc002pex.2	-	3	1228	c.1115G>A	c.(1114-1116)GGA>GAA	p.G372E		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	372	Cytoplasmic (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	GGACGACGTTCCCACGGCGCT	0.647													23	42					0	0	0.001882	0	0
FKRP	79147	broad.mit.edu	37	19	47259941	47259941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:47259941C>T	uc002pfn.2	+	4	1531	c.1234C>T	c.(1234-1236)CAC>TAC	p.H412Y	FKRP_uc002pfp.2_Missense_Mutation_p.H412Y	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	412						extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		CGAAAGCAACCACTTGCACGT	0.637													4	22					0	0	0.001168	0	0
DHX34	9704	broad.mit.edu	37	19	47882968	47882968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:47882968C>T	uc010xyn.1	+	14	3049	c.2708C>T	c.(2707-2709)TCC>TTC	p.S903F	DHX34_uc010xyo.1_Missense_Mutation_p.S32F	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	903						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		CTCTTTCAGTCCCTCCTGCTT	0.642													13	81					0	0	0.002450	0	0
FUT1	2523	broad.mit.edu	37	19	49253686	49253686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:49253686C>T	uc002pkk.2	-	4	1828	c.853G>A	c.(853-855)GGA>AGA	p.G285R		NM_000148	NP_000139	P19526	FUT1_HUMAN	fucosyltransferase 1	285	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to plasma membrane|membrane fraction	galactoside 2-alpha-L-fucosyltransferase activity			ovary(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000135)|all cancers(93;0.000354)|Epithelial(262;0.0191)|GBM - Glioblastoma multiforme(486;0.0222)		GCCTCCTGTCCATCGCCAGCA	0.572													18	65					0	0	0.000958	0	0
FUT1	2523	broad.mit.edu	37	19	49254333	49254333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:49254333G>A	uc002pkk.2	-	4	1181	c.206C>T	c.(205-207)TCC>TTC	p.S69F		NM_000148	NP_000139	P19526	FUT1_HUMAN	fucosyltransferase 1	69	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to plasma membrane|membrane fraction	galactoside 2-alpha-L-fucosyltransferase activity			ovary(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000135)|all cancers(93;0.000354)|Epithelial(262;0.0191)|GBM - Glioblastoma multiforme(486;0.0222)		CTGGGGACAGGAAGAGGAGGC	0.637													11	26					0	0	0.000673	0	0
BCAT2	587	broad.mit.edu	37	19	49299747	49299747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:49299747G>A	uc002pkr.2	-	10	1115	c.1078C>T	c.(1078-1080)CCC>TCC	p.P360S	BCAT2_uc002pkp.2_Missense_Mutation_p.P320S|BCAT2_uc002pkq.3_Missense_Mutation_p.P320S|BCAT2_uc002pks.2_Missense_Mutation_p.P320S|BCAT2_uc002pkt.2_Missense_Mutation_p.P268S|BCAT2_uc010emh.1_Missense_Mutation_p.P360S|BCAT2_uc010emi.1_Missense_Mutation_p.P268S	NM_001190	NP_001181	O15382	BCAT2_HUMAN	branched chain aminotransferase 2, mitochondrial	360						mitochondrial matrix	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			ovary(1)	1		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.000366)|Epithelial(262;0.0195)|GBM - Glioblastoma multiforme(486;0.0224)	L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|Pyridoxal Phosphate(DB00114)	TCCATGGTGGGAATGTGGAGG	0.612													31	54					0	0	0.002445	0	0
GYS1	2997	broad.mit.edu	37	19	49473946	49473946	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:49473946G>C	uc002plp.2	-	14	1907	c.1666C>G	c.(1666-1668)CGG>GGG	p.R556G	GYS1_uc010xzy.1_Missense_Mutation_p.R189G|GYS1_uc010emm.2_Missense_Mutation_p.R492G|GYS1_uc010xzz.1_Missense_Mutation_p.R476G	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	556					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		CTGCGGAACCGCCGGTCAAGA	0.587											OREG0025611	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	30					0	0	0.001855	0	0
MED25	81857	broad.mit.edu	37	19	50338993	50338993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:50338993C>T	uc002ppw.1	+	16	1809	c.1756C>T	c.(1756-1758)CGC>TGC	p.R586C	MED25_uc010ybe.1_Missense_Mutation_p.R373C|MED25_uc002ppx.1_Missense_Mutation_p.R367C	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	586	Interaction with RARA.|Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		GCTCCAGCTCCGCCCACCGCA	0.721													3	5					0	0	0.004672	0	0
SPIB	6689	broad.mit.edu	37	19	50926083	50926083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:50926083C>T	uc002psd.2	+	4	153	c.128C>T	c.(127-129)TCC>TTC	p.S43F	SPIB_uc002pse.2_Missense_Mutation_p.S43F|SPIB_uc010ycc.1_Intron	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	43	TAD2.				regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		CCCCCAGACTCCCTGTGGGAC	0.647													12	44					0	0	0.002450	0	0
GPR32	2854	broad.mit.edu	37	19	51274318	51274318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:51274318C>T	uc010ycf.1	+	1	461	c.461C>T	c.(460-462)ACT>ATT	p.T154I		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	154	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		AACCACCGCACTGTGCAGCGG	0.597													39	54					0	0	0.005524	0	0
KLK12	43849	broad.mit.edu	37	19	51534143	51534143	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:51534143G>A	uc002pvg.1	-	4	612	c.492C>T	c.(490-492)CTC>CTT	p.L164L	KLK11_uc002pvf.1_5'Flank|KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Silent_p.L54L|KLK12_uc010ycr.1_Silent_p.L54L|KLK12_uc010ycs.1_Silent_p.L54L|KLK12_uc002pvh.1_Silent_p.L164L|KLK12_uc002pvi.1_Silent_p.L164L|KLK12_uc002pvj.1_Missense_Mutation_p.L78F	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	164	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		AGACGATGGAGAGGTTGAGGC	0.612													22	104					0	0	0.005443	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51919420	51919420	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:51919420G>A	uc002pwo.2	-	5	1372	c.756C>T	c.(754-756)GCC>GCT	p.A252A	SIGLEC10_uc002pwp.2_Silent_p.A194A|SIGLEC10_uc002pwq.2_Silent_p.A194A|SIGLEC10_uc002pwr.2_Silent_p.A252A|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Silent_p.A204A|SIGLEC10_uc010eow.2_Silent_p.A64A|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	252	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GGGGCTCCAGGGCTggagtgg	0.413													5	9					0	0	0.000602	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52001296	52001296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:52001296G>A	uc002pwx.1	-	5	1437	c.1381C>T	c.(1381-1383)CTC>TTC	p.L461F	SIGLEC12_uc002pww.1_Missense_Mutation_p.L343F|SIGLEC12_uc010eoy.1_Missense_Mutation_p.L188F	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	461	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TGCAGGGAGAGGCTCAGGGAA	0.587													16	21					0	0	0.000958	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52002866	52002866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:52002866G>A	uc002pwx.1	-	3	969	c.913C>T	c.(913-915)CCC>TCC	p.P305S	SIGLEC12_uc002pww.1_Missense_Mutation_p.P187S|SIGLEC12_uc010eoy.1_Missense_Mutation_p.P32S	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	305	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GTGATCGTGGGGGGCGTCCCC	0.662													16	40					0	0	0.006122	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52002945	52002945	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:52002945G>A	uc002pwx.1	-	3	890	c.834C>T	c.(832-834)TCC>TCT	p.S278S	SIGLEC12_uc002pww.1_Silent_p.S160S|SIGLEC12_uc010eoy.1_Silent_p.S5S	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	278	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TCCCCGGGATGGAGAAGGTGG	0.632													30	38					0	0	0.004289	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52132613	52132613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:52132613G>A	uc002pxe.2	-	3	837	c.698C>T	c.(697-699)TCC>TTC	p.S233F		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	233	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CCACTCACAGGAGACATTGAG	0.493													20	43					0	0	0.004656	0	0
ZNF880	400713	broad.mit.edu	37	19	52887591	52887591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:52887591C>T	uc002pzc.2	+	4	807	c.758C>T	c.(757-759)TCA>TTA	p.S253L		NM_001145434	NP_001138906	Q6PDB4	ZN880_HUMAN	zinc finger protein LOC400713	253	C2H2-type 3.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						AATCGAATTTCACTCCTTGCA	0.393													4	12					0	0	0.001168	0	0
ZNF528	84436	broad.mit.edu	37	19	52919202	52919202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:52919202C>T	uc002pzh.2	+	7	1523	c.1097C>T	c.(1096-1098)TCC>TTC	p.S366F	ZNF528_uc002pzi.2_Missense_Mutation_p.S133F	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	366	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		TCAGTGCGTTCCAGCCTCATA	0.418													13	51					0	0	0.001855	0	0
ZNF578	147660	broad.mit.edu	37	19	53014273	53014273	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:53014273C>T	uc002pzp.3	+	6	883	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		ATAATTTTTTCCATTCATCAT	0.358													32	61					0	0	0.001786	0	0
ZNF578	147660	broad.mit.edu	37	19	53014574	53014574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:53014574C>T	uc002pzp.3	+	6	1184	c.940C>T	c.(940-942)CCT>TCT	p.P314S		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	89					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		TGGTGAGAAACCTTACAAGTG	0.413													38	53					0	0	0.001951	0	0
ZNF808	388558	broad.mit.edu	37	19	53057062	53057062	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:53057062A>C	uc010epq.1	+	5	1070	c.893A>C	c.(892-894)TAC>TCC	p.Y298S	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	298	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TCCTTCAGTTACAAGTCATCC	0.418													31	89					0	0	0.002445	0	0
MIR521-2	574481	broad.mit.edu	37	19	54219879	54219879	+	RNA	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54219879T>A	hsa-mir-521-2|MI0003163	+			c.32T>A																				0						AGGGAAGAATTTTCTCTTGTC	0.413													74	102					0	0	0.003610	0	0
NLRP12	91662	broad.mit.edu	37	19	54318225	54318225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54318225G>A	uc002qch.3	-	2	527	c.307C>T	c.(307-309)CCG>TCG	p.P103S	NLRP12_uc002qci.3_Missense_Mutation_p.P103S|NLRP12_uc002qcj.3_Missense_Mutation_p.P103S|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.P103S	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	103					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		AGTGAGGACGGGCCACCAGGT	0.493													42	69					0	0	0.003610	0	0
NLRP12	91662	broad.mit.edu	37	19	54327271	54327271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54327271G>A	uc002qch.3	-	1	378	c.158C>T	c.(157-159)CCC>CTC	p.P53L	NLRP12_uc002qci.3_Missense_Mutation_p.P53L|NLRP12_uc002qcj.3_Missense_Mutation_p.P53L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.P53L	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	53	DAPIN.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CATTTCCAGGGGACCGGCCTT	0.592													13	52					0	0	0.002450	0	0
OSCAR	126014	broad.mit.edu	37	19	54600214	54600214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54600214C>T	uc002qdd.2	-	4	500	c.383G>A	c.(382-384)CGA>CAA	p.R128Q	OSCAR_uc002qcy.2_Missense_Mutation_p.R107Q|OSCAR_uc002qcz.2_Missense_Mutation_p.R103Q|OSCAR_uc002qda.2_Missense_Mutation_p.R107Q|OSCAR_uc002qdb.2_Missense_Mutation_p.R92Q|OSCAR_uc010erc.2_Silent_p.P70P|OSCAR_uc002qdc.2_Missense_Mutation_p.R117Q	NM_206818	NP_996554	Q8IYS5	OSCAR_HUMAN	osteoclast-associated receptor isoform 1	103	Ig-like 1.					extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)					GTCTGGCCTTCGGTAGCAGCA	0.632													7	31					0	0	0.003080	0	0
TMC4	147798	broad.mit.edu	37	19	54676769	54676769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54676769G>A	uc010erf.2	-	1	176	c.44C>T	c.(43-45)TCT>TTT	p.S15F	TMC4_uc002qdo.2_Missense_Mutation_p.S15F	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	15	Extracellular (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCACCCCCTAGAGGAGCCCCA	0.632													32	138					0	0	0.003755	0	0
LILRB5	10990	broad.mit.edu	37	19	54759988	54759988	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54759988C>T	uc002qex.2	-	4	684	c.573G>A	c.(571-573)TGG>TGA	p.W191*	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Nonsense_Mutation_p.W182*|LILRB5_uc002qey.2_Nonsense_Mutation_p.W191*|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_Intron	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	191	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ATCTGAACCTCCACCTGCAGC	0.567													14	51					0	0	0.004007	0	0
LILRA3	11026	broad.mit.edu	37	19	54803096	54803096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54803096G>A	uc002qfd.2	-	4	646	c.581C>T	c.(580-582)TCG>TTG	p.S194L	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	194	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GCACCTGTACGACCACCTGCG	0.587													21	57					0	0	0.001523	0	0
LILRA4	23547	broad.mit.edu	37	19	54849227	54849227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54849227G>A	uc002qfj.2	-	4	692	c.635C>T	c.(634-636)CCC>CTC	p.P212L	LILRA4_uc002qfi.2_Missense_Mutation_p.P146L	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	212	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		TAGCTGCAGGGGGTCACTGGG	0.567													16	24					0	0	0.006122	0	0
LILRA4	23547	broad.mit.edu	37	19	54849831	54849831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:54849831C>T	uc002qfj.2	-	3	248	c.191G>A	c.(190-192)GGA>GAA	p.G64E	LILRA4_uc002qfi.2_5'UTR	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	64	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CATTGAGTTTCCCTCTTTATC	0.542													27	81					0	0	0.002096	0	0
LILRA1	11024	broad.mit.edu	37	19	55107847	55107847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:55107847G>A	uc002qgh.1	+	7	1334	c.1152G>A	c.(1150-1152)ATG>ATA	p.M384I	LILRA2_uc010yfg.1_Missense_Mutation_p.M382I|LILRA1_uc010yfh.1_Missense_Mutation_p.M384I	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	384	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		AATTCCCTATGAGTCCTGTGA	0.572													42	62					0	0	0.002522	0	0
LILRB1	10859	broad.mit.edu	37	19	55146159	55146159	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:55146159C>T	uc002qgj.2	+	11	1768	c.1428C>T	c.(1426-1428)CTC>CTT	p.L476L	LILRB1_uc010erp.1_Silent_p.L91L|LILRB1_uc002qgl.2_Silent_p.L476L|LILRB1_uc002qgk.2_Silent_p.L477L|LILRB1_uc002qgm.2_Silent_p.L477L|LILRB1_uc010erq.2_Silent_p.L460L|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	476	Helical; (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		tcctcctcctcctcctcctct	0.483										HNSCC(37;0.09)			25	23					0	0	0.002780	0	0
LILRB4	11006	broad.mit.edu	37	19	55175267	55175267	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:55175267G>A	uc002qgp.2	+	3	488	c.126G>A	c.(124-126)GGG>GGA	p.G42G	LILRB4_uc002qgo.1_Silent_p.G83G|LILRB4_uc002qgq.2_Silent_p.G42G|LILRB4_uc010ers.1_5'UTR|LILRB4_uc002qgr.2_Silent_p.G83G|LILRB4_uc010ert.2_Silent_p.G83G|LILRB4_uc010eru.2_Silent_p.G71G	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	42	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		TCAGCTGGGGGAACTCTGTGA	0.607													30	29					0	0	0.002096	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55329935	55329935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:55329935G>A	uc002qhk.3	+	3	299	c.236G>A	c.(235-237)AGC>AAC	p.S79N	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.S21N|KIR3DL1_uc010esf.2_Intron|KIR3DL1_uc010yfo.1_Missense_Mutation_p.S21N|KIR3DL1_uc002qhl.3_Missense_Mutation_p.S79N	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	79	Extracellular (Potential).|Ig-like C2-type 1.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		TTCCAGGAGAGCTTCAACATG	0.507													14	48					0	0	0.001855	0	0
NLRP7	199713	broad.mit.edu	37	19	55451188	55451188	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:55451188G>A	uc002qih.3	-	4	1075	c.999C>T	c.(997-999)TTC>TTT	p.F333F	NLRP7_uc002qig.3_Silent_p.F333F|NLRP7_uc002qii.3_Silent_p.F333F|NLRP7_uc010esk.2_Silent_p.F333F|NLRP7_uc010esl.2_Silent_p.F361F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	333	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AGTGTCTCAGGAAATAGGCCC	0.647													12	21					0	0	0.003163	0	0
ISOC2	79763	broad.mit.edu	37	19	55966676	55966676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:55966676C>T	uc002qlb.2	-	4	544	c.370G>A	c.(370-372)GAC>AAC	p.D124N	ISOC2_uc002qla.2_Missense_Mutation_p.D140N|ISOC2_uc002qlc.2_Missense_Mutation_p.D54N	NM_001136201	NP_001129673	Q96AB3	ISOC2_HUMAN	isochorismatase domain containing 2 isoform 1	124					protein destabilization	mitochondrion|nucleus	catalytic activity|protein binding			ovary(1)	1	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0535)		AGCCCCCGGTCTAGGAGGTCC	0.652													17	11					0	0	0.004990	0	0
NLRP11	204801	broad.mit.edu	37	19	56297047	56297047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:56297047G>A	uc010ygf.1	-	12	3757	c.3046C>T	c.(3046-3048)CCC>TCC	p.P1016S	NLRP11_uc002qlz.2_Missense_Mutation_p.P863S|NLRP11_uc002qmb.2_Missense_Mutation_p.P917S|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	1016							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GACATTCTGGGAAATTTGAAA	0.373													17	67					0	0	0.004007	0	0
NLRP11	204801	broad.mit.edu	37	19	56321174	56321174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:56321174C>T	uc010ygf.1	-	5	1513	c.802G>A	c.(802-804)GCT>ACT	p.A268T	NLRP11_uc002qlz.2_Missense_Mutation_p.A169T|NLRP11_uc002qmb.2_Missense_Mutation_p.A169T|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	268	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CAGCCTGGAGCCATTTTTCTC	0.458													36	37					0	0	0.005524	0	0
NLRP4	147945	broad.mit.edu	37	19	56369416	56369416	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:56369416C>T	uc002qmd.3	+	3	1079	c.657C>T	c.(655-657)ATC>ATT	p.I219I	NLRP4_uc002qmf.2_Silent_p.I144I|NLRP4_uc010etf.2_Silent_p.I50I	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	219	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TAACAGAGATCGTGTCTCAAC	0.537													40	60					0	0	0.001485	0	0
NLRP13	126204	broad.mit.edu	37	19	56424543	56424543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:56424543C>T	uc010ygg.1	-	5	665	c.640G>A	c.(640-642)GAA>AAA	p.E214K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	214							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CGCTGCAGTTCCTCATGTTCG	0.512													71	99					0	0	0.003610	0	0
NLRP13	126204	broad.mit.edu	37	19	56443522	56443522	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:56443522G>A	uc010ygg.1	-	1	181	c.156C>T	c.(154-156)TTC>TTT	p.F52F		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	52	DAPIN.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GGATACGCGGGAAGTGCCCCT	0.547													16	61					0	0	0.000958	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704104	56704104	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:56704104C>T	uc010ygh.1	-	1	318	c.318G>A	c.(316-318)GTG>GTA	p.V106V		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	106	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GCACACCGTTCACCTTGACTA	0.547													18	44					0	0	0.003330	0	0
ZNF471	57573	broad.mit.edu	37	19	57035811	57035811	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:57035811G>A	uc002qnh.2	+	5	508	c.375G>A	c.(373-375)TGG>TGA	p.W125*		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	125					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		AAGAAAATTGGAAATGGGAAG	0.378													11	48					0	0	0.000673	0	0
PEG3	5178	broad.mit.edu	37	19	57327492	57327492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:57327492G>A	uc002qnu.2	-	7	2669	c.2318C>T	c.(2317-2319)TCA>TTA	p.S773L	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.S744L|PEG3_uc002qnv.2_Missense_Mutation_p.S773L|PEG3_uc002qnw.2_Missense_Mutation_p.S649L|PEG3_uc002qnx.2_Missense_Mutation_p.S647L|PEG3_uc010etr.2_Missense_Mutation_p.S773L	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	773					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCTCTCATATGATTTTGCCTC	0.438													54	93					0	0	0.003610	0	0
USP29	57663	broad.mit.edu	37	19	57641808	57641808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:57641808G>A	uc002qny.2	+	4	2121	c.1765G>A	c.(1765-1767)GAT>AAT	p.D589N		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	589					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGAATCCAGTGATTCCCTGGT	0.483													27	41					0	0	0.004656	0	0
USP29	57663	broad.mit.edu	37	19	57642603	57642603	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:57642603T>C	uc002qny.2	+	4	2916	c.2560T>C	c.(2560-2562)TTC>CTC	p.F854L		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	854					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GCAGGCCTGGTTCACATACAA	0.468													17	44					0	0	0.006122	0	0
ZNF264	9422	broad.mit.edu	37	19	57723539	57723539	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:57723539C>T	uc002qob.2	+	4	1487	c.1074C>T	c.(1072-1074)CTC>CTT	p.L358L		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	358	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		GGTCATATCTCATGTGGCACC	0.517													12	50					0	0	0.001368	0	0
MZF1	7593	broad.mit.edu	37	19	59080689	59080689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr19:59080689G>A	uc002qto.2	-	5	1288	c.727C>T	c.(727-729)CCC>TCC	p.P243S	LOC100131691_uc002qtm.2_Intron|MZF1_uc002qtn.2_Missense_Mutation_p.P243S|MZF1_uc010euu.1_Missense_Mutation_p.P284S	NM_198055	NP_932172	P28698	MZF1_HUMAN	zinc finger protein 42 isoform 2	243					viral reproduction	nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0443)|all cancers(4;7.92e-14)|Epithelial(4;5.57e-11)|OV - Ovarian serous cystadenocarcinoma(4;1.13e-09)|GBM - Glioblastoma multiforme(193;0.0108)|Lung(386;0.182)		AGGGCCCTGGGGTGCTCCCTC	0.607													10	19					0	0	0.000443	0	0
FAM110C	642273	broad.mit.edu	37	2	46017	46017	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:46017C>T	uc010yim.1	-	1	369	c.369G>A	c.(367-369)GTG>GTA	p.V123V		NM_001077710	NP_001071178	Q1W6H9	F110C_HUMAN	hypothetical protein LOC642273	123						microtubule|microtubule organizing center|spindle pole					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00221)		all cancers(51;0.000815)|Epithelial(75;0.00379)|OV - Ovarian serous cystadenocarcinoma(76;0.0127)|GBM - Glioblastoma multiforme(21;0.232)		AGAGCTTCTTCACCAGGCTTG	0.672													9	11					0	0	0.000978	0	0
MYT1L	23040	broad.mit.edu	37	2	1926121	1926121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:1926121G>A	uc002qxe.2	-	10	2247	c.1420C>T	c.(1420-1422)CCC>TCC	p.P474S	MYT1L_uc002qxd.2_Missense_Mutation_p.P474S|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	474					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCCTCCCCGGGAAGTTGTCTC	0.473													41	43					0	0	0.002222	0	0
ALLC	55821	broad.mit.edu	37	2	3726125	3726125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:3726125C>T	uc010ewt.2	+	4	313	c.152C>T	c.(151-153)ACC>ATC	p.T51I		NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	70							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		GGCTGGGAGACCAGGAGGAAA	0.483										HNSCC(21;0.051)			14	20					0	0	0.002450	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17697618	17697618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:17697618G>A	uc002rcl.1	-	1	2089	c.2065C>T	c.(2065-2067)CCC>TCC	p.P689S	RAD51AP2_uc010exn.1_Missense_Mutation_p.P680S	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	689										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					ATTAAAAGGGGAATTTTTTCA	0.294													29	42					0	0	0.001512	0	0
VSNL1	7447	broad.mit.edu	37	2	17773477	17773477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:17773477G>A	uc002rcm.2	+	2	520	c.136G>A	c.(136-138)GAG>AAG	p.E46K		NM_003385	NP_003376	P62760	VISL1_HUMAN	visinin-like 1	46	EF-hand 1.						calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GCTAAATCTCGAGGAATTTCA	0.428													17	26					0	0	0.001523	0	0
APOB	338	broad.mit.edu	37	2	21225679	21225679	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:21225679C>T	uc002red.2	-	29	12743	c.12615G>A	c.(12613-12615)CCG>CCA	p.P4205P		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4205					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGGTTTCCCCGGAAACTGGA	0.433													82	77					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21231904	21231904	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:21231904G>A	uc002red.2	-	26	7964	c.7836C>T	c.(7834-7836)TTC>TTT	p.F2612F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2612					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGGTGTCTGGAAGGTAGCTT	0.413													44	186					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21236095	21236095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:21236095G>A	uc002red.2	-	25	4281	c.4153C>T	c.(4153-4155)CTT>TTT	p.L1385F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1385					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CGAGCCCGAAGGCTGAAATGG	0.532													52	274					0	0	0.003610	0	0
NCOA1	8648	broad.mit.edu	37	2	24929502	24929502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:24929502C>T	uc002rfk.2	+	11	1421	c.1163C>T	c.(1162-1164)CCC>CTC	p.P388L	NCOA1_uc010eye.2_Missense_Mutation_p.P388L|NCOA1_uc002rfi.2_Missense_Mutation_p.P237L|NCOA1_uc002rfj.2_Missense_Mutation_p.P388L|NCOA1_uc002rfl.2_Missense_Mutation_p.P388L	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	388	Interaction with STAT3.								PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGAGTAAATCCCTCGGTCAAT	0.463			T	PAX3	alveolar rhadomyosarcoma								12	41					0	0	0.003163	0	0
HADHA	3030	broad.mit.edu	37	2	26455137	26455137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:26455137G>A	uc002rgy.2	-	6	594	c.464C>T	c.(463-465)TCA>TTA	p.S155L	HADHA_uc010yks.1_Missense_Mutation_p.S68L|HADHA_uc010ykt.1_Missense_Mutation_p.S68L	NM_000182	NP_000173	P40939	ECHA_HUMAN	mitochondrial trifunctional protein, alpha	155					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	GTATTGGCATGAAATGGCAAC	0.378													21	22					0	0	0.001882	0	0
HADHB	3032	broad.mit.edu	37	2	26501657	26501657	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:26501657C>T	uc002rgz.2	+	8	869	c.618C>T	c.(616-618)TTC>TTT	p.F206F	HADHB_uc010ykv.1_Silent_p.F184F|HADHB_uc010ykw.1_Silent_p.F191F|HADHB_uc002rha.2_Intron|HADHB_uc010ykx.1_Silent_p.F132F	NM_000183	NP_000174	P55084	ECHB_HUMAN	mitochondrial trifunctional protein, beta	206					fatty acid beta-oxidation	mitochondrial nucleoid	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acyltransferase activity|enoyl-CoA hydratase activity|protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GATTTAATTTCCTAGCACCTG	0.428													32	26					0	0	0.003271	0	0
OTOF	9381	broad.mit.edu	37	2	26696884	26696884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:26696884G>A	uc002rhk.2	-	27	3510	c.3383C>T	c.(3382-3384)CCC>CTC	p.P1128L	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Missense_Mutation_p.P381L|OTOF_uc002rhi.2_Missense_Mutation_p.P438L|OTOF_uc002rhj.2_Missense_Mutation_p.P381L	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1128	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCTGAGCACGGGCCGGATGCC	0.642													22	27					0	0	0.004656	0	0
CAD	790	broad.mit.edu	37	2	27457094	27457094	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:27457094G>A	uc002rji.2	+	22	3780	c.3618G>A	c.(3616-3618)AAG>AAA	p.K1206K	CAD_uc010eyw.2_Silent_p.K1143K	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1206	CPSase B.|ATP-grasp 2.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TCATTGCCAAGGTAATAAGGC	0.522													10	48					0	0	0.000978	0	0
PLB1	151056	broad.mit.edu	37	2	28719005	28719005	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:28719005C>T	uc002rmb.1	+	1	24	c.24C>T	c.(22-24)TTC>TTT	p.F8F	PLB1_uc010ezj.1_Silent_p.F8F	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	8					lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					CAGGCATTTTCCTCCTGGAGC	0.597													23	55					0	0	0.003954	0	0
CAPN13	92291	broad.mit.edu	37	2	30966434	30966434	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:30966434C>T	uc002rnn.2	-	12	1436	c.1260G>A	c.(1258-1260)GAG>GAA	p.E420E	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	420					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					GTGGAAATTTCTCCCGGAACC	0.478													32	35					0	0	0.002445	0	0
LTBP1	4052	broad.mit.edu	37	2	33172839	33172839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:33172839G>A	uc002ros.2	+	1	448	c.448G>A	c.(448-450)GGC>AGC	p.G150S		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	150					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GACCCAGAGCGGCGGAGGCTC	0.512													9	7					0	0	0.000673	0	0
LTBP1	4052	broad.mit.edu	37	2	33572504	33572504	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:33572504C>T	uc002ros.2	+	26	3930	c.3930C>T	c.(3928-3930)TTC>TTT	p.F1310F	LTBP1_uc002rot.2_Silent_p.F984F|LTBP1_uc002rou.2_Silent_p.F983F|LTBP1_uc002rov.2_Silent_p.F930F|LTBP1_uc010ymz.1_Silent_p.F941F|LTBP1_uc010yna.1_Silent_p.F888F|LTBP1_uc010ynb.1_Silent_p.F207F	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1309	EGF-like 14; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AAGGGTCCTTCCTGTGCGTGT	0.542													34	63					0	0	0.005524	0	0
LTBP1	4052	broad.mit.edu	37	2	33623595	33623595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:33623595G>A	uc002ros.2	+	34	5152	c.5152G>A	c.(5152-5154)GAC>AAC	p.D1718N	LTBP1_uc002rot.2_Missense_Mutation_p.D1392N|LTBP1_uc002rou.2_Missense_Mutation_p.D1391N|LTBP1_uc002rov.2_Missense_Mutation_p.D1338N|LTBP1_uc010ymz.1_Missense_Mutation_p.D1349N|LTBP1_uc010yna.1_Missense_Mutation_p.D1296N|LTBP1_uc010ynb.1_Missense_Mutation_p.D615N	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1717					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TTTAGAGAAAGACAGTGACCT	0.438													18	69					0	0	0.000958	0	0
RASGRP3	25780	broad.mit.edu	37	2	33759402	33759402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:33759402C>T	uc002rox.2	+	12	1723	c.1096C>T	c.(1096-1098)CTC>TTC	p.L366F	RASGRP3_uc010ync.1_Missense_Mutation_p.L366F|RASGRP3_uc002roy.2_Missense_Mutation_p.L366F	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	366	Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					TTCCCTGGACCTCTATCACAC	0.333													4	21					0	0	0.000248	0	0
SOS1	6654	broad.mit.edu	37	2	39224440	39224440	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:39224440T>A	uc002rrk.3	-	18	2959	c.2918A>T	c.(2917-2919)CAG>CTG	p.Q973L	SOS1_uc002rrj.3_Missense_Mutation_p.Q587L	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	973	Ras-GEF.				apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				ATTTTGGTACTGCTGGATCTC	0.343									Noonan_syndrome				28	108					0	0	0.001271	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43939477	43939477	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:43939477C>T	uc010yny.1	+	15	2498	c.2415C>T	c.(2413-2415)TCC>TCT	p.S805S	PLEKHH2_uc002rte.3_3'UTR|PLEKHH2_uc002rtf.3_Silent_p.S804S	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	805						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				ACCCACTTTCCCTGCAGCCTG	0.483													67	301					0	0	0.003610	0	0
EPAS1	2034	broad.mit.edu	37	2	46611732	46611732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:46611732C>T	uc002ruv.2	+	16	3034	c.2546C>T	c.(2545-2547)CCC>CTC	p.P849L	EPAS1_uc002ruw.2_Missense_Mutation_p.P315L	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	849	CTAD.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			GTGAACGTGCCCGTGCTGGGA	0.632													13	40					0	0	0.001855	0	0
LHCGR	3973	broad.mit.edu	37	2	48936151	48936151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:48936151C>T	uc002rwu.3	-	8	686	c.616G>A	c.(616-618)GAA>AAA	p.E206K	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	206	Extracellular (Potential).|LRR 5.				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TGTACGTTTTCCTTTAGCTCC	0.507									Familial_Male-Limited_Precocious_Puberty				13	58					0	0	0.002450	0	0
FSHR	2492	broad.mit.edu	37	2	49190880	49190880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:49190880C>T	uc002rww.2	-	10	1154	c.1080G>A	c.(1078-1080)ATG>ATA	p.M360I	FSHR_uc002rwx.2_Missense_Mutation_p.M298I|FSHR_uc010fbn.2_Missense_Mutation_p.M334I	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	360	Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TGTTGTACCCCATGATATCTT	0.448									Gonadal_Dysgenesis_46_XX				14	56					0	0	0.002450	0	0
CCDC85A	114800	broad.mit.edu	37	2	56420443	56420444	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:56420443_56420444CC>TT	uc002rzn.2	+	2	1610_1611	c.1108_1109CC>TT	c.(1108-1110)CCT>TTT	p.P370F		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	370	His-rich.									breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TGGAGGGAGCCCTGATCACAAA	0.639													6	8					0	0	0.004672	0	0
BCL11A	53335	broad.mit.edu	37	2	60688871	60688871	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:60688871C>T	uc002sae.1	-	4	1404	c.1176G>A	c.(1174-1176)CTG>CTA	p.L392L	BCL11A_uc002sab.2_Silent_p.L392L|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.L61L|BCL11A_uc010ypj.1_Silent_p.L358L|BCL11A_uc002sad.1_Silent_p.L240L|BCL11A_uc002saf.1_Silent_p.L358L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	392	C2H2-type 2.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GGTGCACCACCAGGTTGCTCT	0.627			T	IGH@	B-CLL								148	192					0	0	0.003610	0	0
KIAA1841	84542	broad.mit.edu	37	2	61331052	61331052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:61331052C>T	uc002saw.3	+	13	1733	c.1430C>T	c.(1429-1431)TCC>TTC	p.S477F	KIAA1841_uc002sax.3_Missense_Mutation_p.S331F|KIAA1841_uc002say.2_Missense_Mutation_p.S477F	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	477											0			Epithelial(17;0.193)			GATTTGCCGTCCTGTCCCACT	0.443													17	50					0	0	0.006122	0	0
USP34	9736	broad.mit.edu	37	2	61415732	61415732	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:61415732T>C	uc002sbe.2	-	80	10168	c.10146A>G	c.(10144-10146)CCA>CCG	p.P3382P	USP34_uc002sbd.2_Silent_p.P184P	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	3382					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			AAGTGCTCGTTGGGGTCAGGA	0.468													34	48					0	0	0.005524	0	0
AFTPH	54812	broad.mit.edu	37	2	64819118	64819118	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:64819118C>T	uc002sdc.2	+	9	2795	c.2763C>T	c.(2761-2763)TTC>TTT	p.F921F	AFTPH_uc002scz.2_Silent_p.F920F|AFTPH_uc002sda.2_Silent_p.F892F|AFTPH_uc002sdb.2_Silent_p.F893F	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	921					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						TGTTGATGTTCCCAGCCACGT	0.438													27	38					0	0	0.005443	0	0
BMP10	27302	broad.mit.edu	37	2	69098402	69098402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:69098402G>A	uc002sez.1	-	1	248	c.89C>T	c.(88-90)TCT>TTT	p.S30F		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	30					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TTCCAGAGGAGACTGCTCTAG	0.507													7	45					0	0	0.001984	0	0
MXD1	4084	broad.mit.edu	37	2	70143266	70143267	+	Missense_Mutation	DNP	TT	AC	AC			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:70143266_70143267TT>AC	uc002sfy.2	+	2	347_348	c.87_88TT>AC	c.(85-90)GGTTAT>GGACAT	p.Y30H	MXD1_uc010yqp.1_Missense_Mutation_p.Y30H|MXD1_uc010yqq.1_5'UTR|MXD1_uc010yqr.1_RNA|MXD1_uc010yqs.1_Missense_Mutation_p.Y30H	NM_002357	NP_002348	Q05195	MAD1_HUMAN	MAX dimerization protein 1	30	Nuclear localization signal (Potential).				cell proliferation|multicellular organismal development	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						CTGAACATGGTTATGCCTCCAT	0.371													9	16					0	0	0.004672	0	0
ADD2	119	broad.mit.edu	37	2	70906010	70906010	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:70906010C>T	uc002sgz.2	-	11	1674	c.1209G>A	c.(1207-1209)ACG>ACA	p.T403T	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.T403T|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Silent_p.T403T|ADD2_uc010fdt.1_Silent_p.T403T|ADD2_uc002shc.1_Silent_p.T403T|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Silent_p.T419T	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	403					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						AGGCTGTGACCGTGGCTGGAA	0.542													26	77					0	0	0.001786	0	0
CD207	50489	broad.mit.edu	37	2	71060970	71060970	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:71060970C>T	uc002shg.2	-	3	419	c.372G>A	c.(370-372)CTG>CTA	p.L124L		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	124	Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						TTTTTAACTTCAGGAACTGAG	0.448													28	22					0	0	0.001512	0	0
SMYD5	10322	broad.mit.edu	37	2	73449921	73449921	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:73449921C>T	uc002siw.2	+	7	710	c.681C>T	c.(679-681)GCC>GCT	p.A227A	SMYD5_uc010yre.1_Silent_p.A111A|SMYD5_uc002six.1_RNA	NM_006062	NP_006053	Q6GMV2	SMYD5_HUMAN	SMYD family member 5	227							metal ion binding				0						TCACAGAGGCCCTCTATGAGG	0.557													4	23					0	0	0.000602	0	0
DCTN1	1639	broad.mit.edu	37	2	74598765	74598765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:74598765C>T	uc002skx.2	-	8	855	c.544G>A	c.(544-546)GAG>AAG	p.E182K	DCTN1_uc002skv.2_Missense_Mutation_p.E48K|DCTN1_uc002sku.2_Missense_Mutation_p.E48K|DCTN1_uc002skw.1_Missense_Mutation_p.E158K|DCTN1_uc010ffd.2_Missense_Mutation_p.E162K|DCTN1_uc002sky.2_Missense_Mutation_p.E145K	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	182	Ser-rich.				cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						GTGCTGGGCTCACTGCTGCTC	0.672													8	6					0	0	0.004482	0	0
LRRTM4	80059	broad.mit.edu	37	2	76975907	76975907	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:76975907G>A	uc002snr.2	-	4	2102	c.1687C>T	c.(1687-1689)CTG>TTG	p.L563L	LRRTM4_uc002snq.2_Silent_p.L563L	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	563	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		CCCAGCTCCAGGCCGGGGCTT	0.597													18	106					0	0	0.001523	0	0
CTNNA2	1496	broad.mit.edu	37	2	80085165	80085165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:80085165G>A	uc010ysh.1	+	3	330	c.325G>A	c.(325-327)GAG>AAG	p.E109K	CTNNA2_uc010yse.1_Missense_Mutation_p.E109K|CTNNA2_uc010ysf.1_Missense_Mutation_p.E109K|CTNNA2_uc010ysg.1_Missense_Mutation_p.E109K	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	109					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CGCCTCCTCCGAGTTTGCAGA	0.582													37	60					0	0	0.002222	0	0
CTNNA2	1496	broad.mit.edu	37	2	80835431	80835431	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:80835431C>T	uc010ysh.1	+	16	2423	c.2418C>T	c.(2416-2418)CTC>CTT	p.L806L	CTNNA2_uc010yse.1_Silent_p.L806L|CTNNA2_uc010ysf.1_Silent_p.L806L|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysi.1_Silent_p.L438L|CTNNA2_uc010ysj.1_Silent_p.L135L	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	806					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						GAGGAGAGCTCATTGTGTCAG	0.458													6	7					0	0	0.001168	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518229	84518229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:84518229G>A	uc010ffz.1	+	1	424	c.287G>A	c.(286-288)CGA>CAA	p.R96Q		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						GATTGGCAACGAGTGGAGAAG	0.483													26	33					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	2	89442280	89442280	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:89442280G>A	uc010ytr.1	-	33		c.4137C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGCCCTGCAGGAGAGGGTGGC	0.537													11	67					0	0	0.001368	0	0
TMEM127	55654	broad.mit.edu	37	2	96919674	96919674	+	Missense_Mutation	SNP	G	A	A	rs140860906		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:96919674G>A	uc002svq.2	-	4	846	c.589C>T	c.(589-591)CGC>TGC	p.R197C	TMEM127_uc002svr.2_Missense_Mutation_p.R197C	NM_017849	NP_060319	O75204	TM127_HUMAN	transmembrane protein 127	197					negative regulation of cell proliferation|negative regulation of TOR signaling cascade	cytoplasm|integral to membrane|plasma membrane					0						GGGTAGTGGCGCAGGAGGTTG	0.592									Pheochromocytoma_(Adrenal)_Familial				12	38					0	0	0.001368	0	0
TMEM127	55654	broad.mit.edu	37	2	96919815	96919815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:96919815C>T	uc002svq.2	-	4	705	c.448G>A	c.(448-450)GCT>ACT	p.A150T	TMEM127_uc002svr.2_Missense_Mutation_p.A150T	NM_017849	NP_060319	O75204	TM127_HUMAN	transmembrane protein 127	150	Helical; (Potential).				negative regulation of cell proliferation|negative regulation of TOR signaling cascade	cytoplasm|integral to membrane|plasma membrane					0						AGTTCAGAAGCCCAATAAGAA	0.527									Pheochromocytoma_(Adrenal)_Familial				6	91					0	0	0.001168	0	0
SEMA4C	54910	broad.mit.edu	37	2	97526999	97526999	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:97526999G>A	uc002sxh.3	-	15	2026	c.1866C>T	c.(1864-1866)GCC>GCT	p.A622A	SEMA4C_uc002sxf.3_Silent_p.A122A|SEMA4C_uc002sxe.2_Silent_p.A163A|SEMA4C_uc002sxg.3_Silent_p.A675A	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	622	Extracellular (Potential).|Ig-like C2-type.				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						GGTAGGCCCCGGCATGGCGGG	0.697													15	12					0	0	0.001216	0	0
SEMA4C	54910	broad.mit.edu	37	2	97530576	97530576	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:97530576G>A	uc002sxh.3	-	9	988	c.828C>T	c.(826-828)ACC>ACT	p.T276T	SEMA4C_uc002sxf.3_5'Flank|SEMA4C_uc002sxe.2_5'Flank|SEMA4C_uc002sxg.3_Silent_p.T329T	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	276	Extracellular (Potential).|Dominant negative effect on myogenic differentiation (By similarity).|Sema.				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						TCAGGAACGTGGTCCACTTCC	0.677													19	26					0	0	0.002299	0	0
TSGA10	80705	broad.mit.edu	37	2	99685455	99685455	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:99685455A>G	uc002szg.3	-	13	1742	c.1114T>C	c.(1114-1116)TCC>CCC	p.S372P	TSGA10_uc002szh.3_Missense_Mutation_p.S372P|TSGA10_uc002szi.3_Missense_Mutation_p.S372P|TSGA10_uc010fin.1_Missense_Mutation_p.S372P	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	372					spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						AATTTTTTGGACAGTGCCTAC	0.264													13	62					0	0	0.001368	0	0
NMS	129521	broad.mit.edu	37	2	101093845	101093845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:101093845C>T	uc002tan.1	+	5	237	c.230C>T	c.(229-231)ACT>ATT	p.T77I		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	77					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						TACTCCAGAACTCAGGAGGCA	0.393													14	17					0	0	0.004990	0	0
IL1R1	3554	broad.mit.edu	37	2	102791180	102791180	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:102791180C>T	uc002tbq.2	+	10	1443	c.1125C>T	c.(1123-1125)CTC>CTT	p.L375L	IL1R1_uc010fix.2_Silent_p.L375L|IL1R1_uc002tbp.2_Silent_p.L375L|IL1R1_uc002tbr.2_Silent_p.L375L	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	375	Cytoplasmic (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	ATGATTTTCTCCCAATAAAAG	0.348													22	45					0	0	0.003330	0	0
SLC9A4	389015	broad.mit.edu	37	2	103149004	103149004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:103149004C>T	uc002tbz.3	+	12	2711	c.2254C>T	c.(2254-2256)CAT>TAT	p.H752Y		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	752	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						ACCTCTGTTTCATGCAGTGGA	0.532													11	14					0	0	0.000978	0	0
SLC9A2	6549	broad.mit.edu	37	2	103310886	103310886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:103310886G>A	uc002tca.2	+	6	1581	c.1439G>A	c.(1438-1440)CGA>CAA	p.R480Q		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	480	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						ATAACTATTCGACCACTGGTG	0.274													7	42					0	0	0.004482	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459540	107459540	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:107459540G>A	uc002tdq.2	-	2	1013	c.894C>T	c.(892-894)GTC>GTT	p.V298V	ST6GAL2_uc002tdr.2_Silent_p.V298V|ST6GAL2_uc002tds.3_Silent_p.V298V	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	298	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CAGACATGACGACAGCGCAGC	0.687													9	14					0	0	0.001368	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459956	107459956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:107459956C>T	uc002tdq.2	-	2	597	c.478G>A	c.(478-480)GAG>AAG	p.E160K	ST6GAL2_uc002tdr.2_Missense_Mutation_p.E160K|ST6GAL2_uc002tds.3_Missense_Mutation_p.E160K	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	160	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						AAAGCCCCCTCCCGTGGGCCT	0.647													27	93					0	0	0.005443	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460171	107460171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:107460171G>A	uc002tdq.2	-	2	382	c.263C>T	c.(262-264)TCC>TTC	p.S88F	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S88F|ST6GAL2_uc002tds.3_Missense_Mutation_p.S88F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	88	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CGCATGAAAGGAACCGGCTGG	0.632													13	20					0	0	0.001855	0	0
RGPD4	285190	broad.mit.edu	37	2	108488425	108488425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:108488425C>T	uc010ywk.1	+	20	4047	c.3965C>T	c.(3964-3966)TCT>TTT	p.S1322F	RGPD4_uc002tdu.2_Missense_Mutation_p.S509F|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1322					intracellular transport		binding			skin(2)	2						GATGAAGAATCTGATGTTACT	0.398													25	79					0	0	0.004878	0	0
RANBP2	5903	broad.mit.edu	37	2	109382422	109382422	+	Silent	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:109382422A>C	uc002tem.3	+	20	5553	c.5427A>C	c.(5425-5427)CCA>CCC	p.P1809P		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1809	RanBP2-type 8.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						CCTCTAAACCAACTCATAAAC	0.418													23	26					0	0	0.002299	0	0
RANBP2	5903	broad.mit.edu	37	2	109382703	109382703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:109382703C>T	uc002tem.3	+	20	5834	c.5708C>T	c.(5707-5709)TCG>TTG	p.S1903L		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1903					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TTTGGCATTTCGGAACCAGGA	0.408													76	81					0	0	0.003610	0	0
SEPT10	151011	broad.mit.edu	37	2	110321941	110321941	+	Splice_Site	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:110321941A>T	uc002tew.2	-	8	1407	c.1028_splice	c.e8+1	p.S343_splice	SEPT10_uc010ywu.1_Splice_Site_p.S176_splice|SEPT10_uc002tex.2_Splice_Site_p.S320_splice|SEPT10_uc002tey.2_Splice_Site_p.S343_splice|SEPT10_uc010ywv.1_Splice_Site_p.S209_splice|SEPT10_uc002tev.1_Splice_Site_p.S150_splice|SEPT10_uc010fjo.2_Splice_Site|SEPT10_uc002tez.1_Nonstop_Mutation_p.*119K	NM_144710	NP_653311	Q9P0V9	SEP10_HUMAN	septin 10 isoform 1						cell cycle|cell division	septin complex	GTP binding				0						ACCCCACCCTACCTGACTGGC	0.488													18	50					0	0	0.003330	0	0
ACOXL	55289	broad.mit.edu	37	2	111551682	111551682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:111551682G>A	uc002tgr.3	+	5	500	c.276G>A	c.(274-276)ATG>ATA	p.M92I	ACOXL_uc010fkc.2_Missense_Mutation_p.M92I|ACOXL_uc010yxk.1_Missense_Mutation_p.M92I	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	92					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						TGTTTGCAATGACCGAGAGGG	0.557													11	45					0	0	0.001855	0	0
ANAPC1	64682	broad.mit.edu	37	2	112614391	112614391	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:112614391C>T	uc002thi.2	-	12	1678	c.1431G>A	c.(1429-1431)AAG>AAA	p.K477K		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	477					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						GTGCTGCATCCTTTGCTGGTA	0.308													7	62					0	0	0.000443	0	0
ANAPC1	64682	broad.mit.edu	37	2	112621464	112621464	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:112621464A>T	uc002thi.2	-	9	1087	c.840T>A	c.(838-840)AAT>AAA	p.N280K		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	280					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						TTAAAACAACATTCTCTTCCT	0.393													18	14					0	0	0.006122	0	0
CKAP2L	150468	broad.mit.edu	37	2	113514565	113514565	+	Missense_Mutation	SNP	G	A	A	rs76184593	by1000genomes	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:113514565G>A	uc002tie.2	-	4	462	c.383C>T	c.(382-384)TCG>TTG	p.S128L	CKAP2L_uc002tif.2_5'UTR|CKAP2L_uc010yxp.1_5'UTR|CKAP2L_uc010yxq.1_5'UTR	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	128						centrosome					0						TGTTGTGGACGATCCAGCTTC	0.413													68	86					0	0	0.003610	0	0
IL1F7	27178	broad.mit.edu	37	2	113676334	113676334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:113676334C>T	uc002tij.2	+	5	647	c.605C>T	c.(604-606)TCA>TTA	p.S202L	IL1F7_uc002tik.2_Missense_Mutation_p.S181L|IL1F7_uc002til.2_Missense_Mutation_p.S162L|IL1F7_uc002tim.2_Missense_Mutation_p.S141L|IL1F7_uc002tin.2_Missense_Mutation_p.S176L	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	202					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						ATTGAATTTTCATTTCAACCA	0.458													20	20					0	0	0.001882	0	0
PAX8	7849	broad.mit.edu	37	2	113993096	113993096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:113993096G>A	uc010yxt.1	-	9	1128	c.962C>T	c.(961-963)CCT>CTT	p.P321L	PAX8_uc010yxu.1_Intron|PAX8_uc010yxv.1_Intron|PAX8_uc002tjm.2_Intron|PAX8_uc002tjn.2_Intron|uc002tjp.2_5'Flank|LOC654433_uc002tjq.3_5'Flank|LOC654433_uc010fks.2_5'Flank|LOC654433_uc010fkt.2_5'Flank|LOC654433_uc002tjr.3_5'Flank	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	321	Ser-rich.				branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						TAAAGAGGAAGGGGTGGAGCT	0.597			T	PPARG	follicular thyroid		Thyroid dysgenesis 						5	26					0	0	0.001168	0	0
TMEM37	140738	broad.mit.edu	37	2	120194569	120194569	+	Silent	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:120194569G>T	uc002tly.2	+	2	160	c.126G>T	c.(124-126)TCG>TCT	p.S42S		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	42	Helical; (Potential).					integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						TCCTGTCCTCGGTCTCCATTT	0.607													5	100					0.00307968	0.00598428	0.003080	1	0
CLASP1	23332	broad.mit.edu	37	2	122285422	122285422	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:122285422G>A	uc002tnc.2	-	5	813	c.423C>T	c.(421-423)TTC>TTT	p.F141F	CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Silent_p.F141F|CLASP1_uc010yza.1_Silent_p.F141F|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Silent_p.F141F	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	141					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					CTCGAGTACGGAAATTCTTGT	0.433													21	46					0	0	0.003954	0	0
MYO7B	4648	broad.mit.edu	37	2	128324317	128324317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:128324317G>A	uc002top.2	+	5	438	c.385G>A	c.(385-387)GAG>AAG	p.E129K		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	129	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CCATATGGGCGAGCTGCCCCC	0.587													14	13					0	0	0.003163	0	0
CCDC74B	91409	broad.mit.edu	37	2	130897227	130897227	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:130897227G>A	uc002tqm.1	-	8	1106	c.1044C>T	c.(1042-1044)ATC>ATT	p.I348I	CCDC74B_uc010yzw.1_Silent_p.I450I|CCDC74B_uc002tqn.1_Silent_p.I282I	NM_207310	NP_997193	Q96LY2	CC74B_HUMAN	coiled-coil domain containing 74B	348											0	Colorectal(110;0.1)					GTGCGGGCAGGATGGCACGCT	0.637													8	16					0	0	0.004482	0	0
POTEE	445582	broad.mit.edu	37	2	131976027	131976027	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:131976027T>G	uc002tsn.2	+	1	104	c.52T>G	c.(52-54)TTT>GTT	p.F18V	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	18							ATP binding				0						GAAGAAGCCATTTGGTCTCAG	0.557													50	61					0	0	0.003610	0	0
POTEE	445582	broad.mit.edu	37	2	131984464	131984464	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:131984464G>A	uc002tsn.2	+	4	931	c.879G>A	c.(877-879)AAG>AAA	p.K293K	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	293	ANK 4.						ATP binding				0						TTTTAATCAAGAAAAAAGCGA	0.343													16	43					0	0	0.003954	0	0
TMEM163	81615	broad.mit.edu	37	2	135470807	135470807	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:135470807G>A	uc002ttx.2	-	2	351	c.285C>T	c.(283-285)TCC>TCT	p.S95S	TMEM163_uc002tty.2_RNA	NM_030923	NP_112185	Q8TC26	TM163_HUMAN	transmembrane protein 163	95	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(221;0.154)		TGACAATGATGGAGAACCAGG	0.517													28	51					0	0	0.001786	0	0
LCT	3938	broad.mit.edu	37	2	136567271	136567271	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:136567271G>A	uc002tuu.1	-	8	2657	c.2646C>T	c.(2644-2646)GTC>GTT	p.V882V		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	882	Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TTTCCCAAACGACTTTAGCCT	0.507													64	83					0	0	0.003610	0	0
THSD7B	80731	broad.mit.edu	37	2	137917934	137917934	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:137917934A>T	uc002tva.1	+	5	1428	c.1428A>T	c.(1426-1428)AAA>AAT	p.K476N	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.K366N	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CTCAGGGGAAAAAAGGTGAGT	0.458													8	21					0	0	0.003080	0	0
THSD7B	80731	broad.mit.edu	37	2	138033596	138033596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:138033596G>A	uc002tva.1	+	11	2407	c.2407G>A	c.(2407-2409)GCT>ACT	p.A803T	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.A693T	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ACAAACAAGAGGTATGATGAT	0.368													4	4					0	0	0.000248	0	0
THSD7B	80731	broad.mit.edu	37	2	138421075	138421075	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:138421075G>A	uc002tva.1	+	25	4494	c.4494G>A	c.(4492-4494)GGG>GGA	p.G1498G	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ACCTTTCTGGGAAAAACAGAC	0.363													4	9					0	0	0.000602	0	0
GTDC1	79712	broad.mit.edu	37	2	144764978	144764978	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:144764978T>G	uc002tvp.2	-	7	925	c.646A>C	c.(646-648)AAG>CAG	p.K216Q	GTDC1_uc002tvo.2_Missense_Mutation_p.K216Q|GTDC1_uc002tvq.2_Intron|GTDC1_uc002tvr.2_Missense_Mutation_p.K216Q|GTDC1_uc010fnn.2_Missense_Mutation_p.K216Q|GTDC1_uc002tvs.2_Missense_Mutation_p.K184Q|GTDC1_uc010fno.2_Missense_Mutation_p.K87Q|GTDC1_uc002tvt.1_Missense_Mutation_p.K216Q	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	216					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		TTAAAATTCTTCAATAAATCC	0.418													5	20					0	0	0.001168	0	0
TNFAIP6	7130	broad.mit.edu	37	2	152222712	152222712	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:152222712C>T	uc002txk.2	+	3	451	c.375C>T	c.(373-375)GCC>GCT	p.A125A		NM_007115	NP_009046	P98066	TSG6_HUMAN	tumor necrosis factor, alpha-induced protein 6	125	Link.				cell adhesion|cell-cell signaling|inflammatory response|signal transduction		hyaluronic acid binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		GATGGGATGCCTATTGCTACA	0.388													10	57					0	0	0.000673	0	0
NEB	4703	broad.mit.edu	37	2	152388399	152388399	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:152388399C>T	uc010fnx.2	-	116	16517	c.16326G>A	c.(16324-16326)AGG>AGA	p.R5442R	NEB_uc002txr.2_Silent_p.R1865R|NEB_uc002txt.3_5'UTR	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5442	Nebulin 148.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CATAGTTTTTCCTGTATTTGA	0.373													4	20					0	0	0.000248	0	0
GALNT13	114805	broad.mit.edu	37	2	154996921	154996921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:154996921G>A	uc002tyr.3	+	4	781	c.214G>A	c.(214-216)GAG>AAG	p.E72K	GALNT13_uc002tyt.3_Missense_Mutation_p.E72K|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	72	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						AGATGACCAGGAGAAAATGAA	0.383													12	35					0	0	0.000978	0	0
CYTIP	9595	broad.mit.edu	37	2	158300411	158300411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:158300411C>T	uc002tzj.1	-	1	194	c.122G>A	c.(121-123)AGG>AAG	p.R41K	CYTIP_uc010zcl.1_Intron	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	41					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CATTTGAATCCTTCTATTATC	0.502													33	47					0	0	0.004289	0	0
ACVR1C	130399	broad.mit.edu	37	2	158443818	158443818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:158443818G>A	uc002tzk.3	-	2	428	c.185C>T	c.(184-186)TCC>TTC	p.S62F	ACVR1C_uc002tzl.3_Missense_Mutation_p.S62F|ACVR1C_uc010fof.2_Missense_Mutation_p.S62F|ACVR1C_uc010foe.2_Missense_Mutation_p.S12F	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	62	Extracellular (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						GGAGACACAGGATTTGATCAC	0.418													50	68					0	0	0.003610	0	0
TANC1	85461	broad.mit.edu	37	2	160032913	160032913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:160032913G>A	uc002uag.2	+	13	2060	c.1786G>A	c.(1786-1788)GAA>AAA	p.E596K	TANC1_uc010fol.1_Missense_Mutation_p.E490K|TANC1_uc010zcm.1_Missense_Mutation_p.E588K|TANC1_uc010fom.1_Missense_Mutation_p.E402K|TANC1_uc002uai.1_RNA	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	596						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						TGGCTTAAATGAAGCTGAGTT	0.284													20	52					0	0	0.001523	0	0
ITGB6	3694	broad.mit.edu	37	2	160958171	160958171	+	RNA	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:160958171A>G	uc002ubg.2	-	1		c.88T>C						P18564	ITB6_HUMAN	Homo sapiens cDNA: FLJ23083 fis, clone LNG06541, highly similar to IR2005735 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2005735.						cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						TTTTGAAGCAACAAAGAGAAA	0.333													3	3					0	0	0.004672	0	0
ITGB6	3694	broad.mit.edu	37	2	161052042	161052042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:161052042G>A	uc002ubh.2	-	4	447	c.431C>T	c.(430-432)TCC>TTC	p.S144F	ITGB6_uc010fow.1_RNA|ITGB6_uc010fou.2_Missense_Mutation_p.S144F|ITGB6_uc010zcq.1_Missense_Mutation_p.S102F|ITGB6_uc010fov.1_Missense_Mutation_p.S144F	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	144	Extracellular (Potential).|VWFA.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						GTCATCCATGGAGGCGGAGAG	0.522													46	40					0	0	0.003610	0	0
KCNH7	90134	broad.mit.edu	37	2	163236489	163236489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:163236489G>A	uc002uch.1	-	14	3217	c.3005C>T	c.(3004-3006)CCC>CTC	p.P1002L		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	1002	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TTCAGGCTGGGGATGTGCATT	0.493													35	46					0	0	0.005524	0	0
XIRP2	129446	broad.mit.edu	37	2	168097217	168097217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:168097217C>T	uc002udx.2	+	6	1031	c.1013C>T	c.(1012-1014)TCT>TTT	p.S338F	XIRP2_uc010fpn.2_Missense_Mutation_p.S371F|XIRP2_uc010fpo.2_Missense_Mutation_p.S338F|XIRP2_uc010fpp.2_Missense_Mutation_p.S338F|XIRP2_uc002udy.2_Missense_Mutation_p.S163F|XIRP2_uc010fpq.2_Missense_Mutation_p.S116F|XIRP2_uc010fpr.2_Missense_Mutation_p.S116F	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	163					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AACCAAGCATCTCAGTTTCAT	0.318													35	51					0	0	0.001706	0	0
XIRP2	129446	broad.mit.edu	37	2	168099701	168099701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:168099701C>T	uc002udx.2	+	8	1817	c.1799C>T	c.(1798-1800)TCC>TTC	p.S600F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S425F|XIRP2_uc010fpq.2_Missense_Mutation_p.S378F|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	425					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GGTGATATTTCCAGGGGCATT	0.433													7	26					0	0	0.003080	0	0
LRP2	4036	broad.mit.edu	37	2	170068590	170068590	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:170068590C>T	uc002ues.2	-	37	6381	c.6168G>A	c.(6166-6168)CGG>CGA	p.R2056R		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2056	Extracellular (Potential).|EGF-like 8.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GAGAGCAGGACCGATTATCAG	0.458													9	70					0	0	0.000443	0	0
LRP2	4036	broad.mit.edu	37	2	170131732	170131732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:170131732C>T	uc002ues.2	-	14	2002	c.1789G>A	c.(1789-1791)GGA>AGA	p.G597R	LRP2_uc010zdf.1_Missense_Mutation_p.G528R	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	597	LDL-receptor class B 4.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGGGAGCCTCCATGAACTACA	0.358													4	8					0	0	0.000248	0	0
DLX1	1745	broad.mit.edu	37	2	172952900	172952900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:172952900G>A	uc002uhl.2	+	3	881	c.683G>A	c.(682-684)GGA>GAA	p.G228E	DLX1_uc002uhm.2_3'UTR	NM_178120	NP_835221	P56177	DLX1_HUMAN	distal-less homeobox 1 isoform 1	228						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GGCTCAGGAGGAAACGCGGGC	0.627													27	58					0	0	0.004656	0	0
PDE11A	50940	broad.mit.edu	37	2	178494141	178494141	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:178494141C>T	uc002ulq.2	-	20	3114	c.2796G>A	c.(2794-2796)AGG>AGA	p.R932R	PDE11A_uc010zfd.1_Silent_p.R123R|PDE11A_uc002ulp.2_Silent_p.R488R|PDE11A_uc002ulr.2_Silent_p.R682R|PDE11A_uc002uls.1_Silent_p.R574R|PDE11A_uc002ult.1_Silent_p.R682R|PDE11A_uc002ulu.1_Silent_p.R574R	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	932					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			AGGTTTAGTTCCTGTCTTCCT	0.483									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				32	51					0	0	0.002096	0	0
PDE11A	50940	broad.mit.edu	37	2	178592807	178592807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:178592807G>A	uc002ulq.2	-	11	2200	c.1882C>T	c.(1882-1884)CTC>TTC	p.L628F	PDE11A_uc002ulp.2_Missense_Mutation_p.L184F|PDE11A_uc002ulr.2_Missense_Mutation_p.L378F|PDE11A_uc002uls.1_Missense_Mutation_p.L270F|PDE11A_uc002ult.1_Missense_Mutation_p.L378F|PDE11A_uc002ulu.1_Missense_Mutation_p.L270F	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	628					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			AACATCCGGAGAGCAGCTGTG	0.423									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				7	5					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179397187	179397187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179397187C>T	uc010zfg.1	-	307	96675	c.96451G>A	c.(96451-96453)GTG>ATG	p.V32151M	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V25846M|TTN_uc010zfi.1_Missense_Mutation_p.V25779M|TTN_uc010zfj.1_Missense_Mutation_p.V25654M	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33078							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTCCTCCACCTTGACATGA	0.473													11	61					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179422211	179422211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179422211C>T	uc010zfg.1	-	278	80298	c.80074G>A	c.(80074-80076)GAA>AAA	p.E26692K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E20387K|TTN_uc010zfi.1_Missense_Mutation_p.E20320K|TTN_uc010zfj.1_Missense_Mutation_p.E20195K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27619							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACACTGGTTCATGCCAGCCC	0.448													18	44					0	0	0.000958	0	0
TTN	7273	broad.mit.edu	37	2	179440898	179440898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179440898C>T	uc010zfg.1	-	275	62481	c.62257G>A	c.(62257-62259)GAT>AAT	p.D20753N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D14448N|TTN_uc010zfi.1_Missense_Mutation_p.D14381N|TTN_uc010zfj.1_Missense_Mutation_p.D14256N|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21680							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACACCTGCATCGTTGATGGCA	0.458													6	29					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179444698	179444698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179444698G>A	uc010zfg.1	-	267	59836	c.59612C>T	c.(59611-59613)CCC>CTC	p.P19871L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P13566L|TTN_uc010zfi.1_Missense_Mutation_p.P13499L|TTN_uc010zfj.1_Missense_Mutation_p.P13374L|uc002umv.1_3'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20798							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTTTCACCGGGATCACCAAT	0.428													11	31					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179468902	179468902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179468902C>T	uc010zfg.1	-	231	47032	c.46808G>A	c.(46807-46809)GGA>GAA	p.G15603E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G9298E|TTN_uc010zfi.1_Missense_Mutation_p.G9231E|TTN_uc010zfj.1_Missense_Mutation_p.G9106E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16530							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTGGTTTTCCTGGAGGTCC	0.468													10	16					0	0	0.000443	0	0
TTN	7273	broad.mit.edu	37	2	179473426	179473426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179473426C>T	uc010zfg.1	-	223	44832	c.44608G>A	c.(44608-44610)GGA>AGA	p.G14870R	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G8565R|TTN_uc010zfi.1_Missense_Mutation_p.G8498R|TTN_uc010zfj.1_Missense_Mutation_p.G8373R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15797							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTCTTTTCCTTCAATCAGT	0.398													5	4					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179480180	179480180	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179480180C>T	uc010zfg.1	-	208	41012	c.40788G>A	c.(40786-40788)TGG>TGA	p.W13596*	TTN_uc010zfh.1_Nonsense_Mutation_p.W7291*|TTN_uc010zfi.1_Nonsense_Mutation_p.W7224*|TTN_uc010zfj.1_Nonsense_Mutation_p.W7099*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14523							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCGATCTCTCCATTTAACAT	0.443													7	44					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179542540	179542540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179542540C>T	uc010zfg.1	-	143	30591	c.30367G>A	c.(30367-30369)GAA>AAA	p.E10123K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6784K|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11050							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTCCTCTTCCTCAGGTAGA	0.443													22	25					0	0	0.002299	0	0
TTN	7273	broad.mit.edu	37	2	179568946	179568946	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179568946G>A	uc010zfg.1	-	103	26643	c.26419C>T	c.(26419-26421)CGA>TGA	p.R8807*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.R5468*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9734							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCTGCTCGAACATCTGCA	0.423													13	56					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179577159	179577159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179577159C>T	uc010zfg.1	-	92	23982	c.23758G>A	c.(23758-23760)GAA>AAA	p.E7920K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E4581K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8847							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCGATTTTTCAGTCGTAGTT	0.423													14	31					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179579103	179579103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179579103C>T	uc010zfg.1	-	88	22890	c.22666G>A	c.(22666-22668)GAA>AAA	p.E7556K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E4217K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8483							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGCTGGTTCCACTCTTGAA	0.408													6	36					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179579257	179579257	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179579257G>A	uc010zfg.1	-	88	22736	c.22512C>T	c.(22510-22512)GTC>GTT	p.V7504V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V4165V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8431							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTACCAACGACAGTAGATA	0.423													4	10					0	0	0.000248	0	0
TTN	7273	broad.mit.edu	37	2	179582835	179582835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179582835C>T	uc010zfg.1	-	83	21390	c.21166G>A	c.(21166-21168)GAA>AAA	p.E7056K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E3717K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7983							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGTGTGTTCTTTATACCAA	0.383													16	18					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179585898	179585898	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179585898A>G	uc010zfg.1	-	76	19340	c.19116T>C	c.(19114-19116)GCT>GCC	p.A6372A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.A3033A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7299							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAACTTTTGAAGCTTCTAATT	0.353													3	8					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179599464	179599464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179599464C>T	uc010zfg.1	-	48	11679	c.11455G>A	c.(11455-11457)GAT>AAT	p.D3819N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D480N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4746							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCAGCTATCACTGCCGACG	0.353													20	51					0	0	0.003954	0	0
TTN	7273	broad.mit.edu	37	2	179602934	179602934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179602934C>T	uc010zfg.1	-	46	10738	c.10514G>A	c.(10513-10515)CGA>CAA	p.R3505Q	TTN_uc010zfh.1_Missense_Mutation_p.R4578Q|TTN_uc010zfi.1_Missense_Mutation_p.R4511Q|TTN_uc010zfj.1_Missense_Mutation_p.R4386Q|TTN_uc002umz.1_Missense_Mutation_p.R166Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4432							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTGAAGATCGAATAGAACA	0.463													7	13					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179605638	179605638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179605638G>A	uc010zfh.1	-	46	12033	c.11809C>T	c.(11809-11811)CCT>TCT	p.P3937S	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P3870S|TTN_uc010zfj.1_Missense_Mutation_p.P3745S|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3869							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTCCCAAAGGAAGCTGACTG	0.398													8	23					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179640917	179640917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:179640917C>T	uc010zfg.1	-	28	5898	c.5674G>A	c.(5674-5676)GAT>AAT	p.D1892N	TTN_uc010zfh.1_Missense_Mutation_p.D1846N|TTN_uc010zfi.1_Missense_Mutation_p.D1846N|TTN_uc010zfj.1_Missense_Mutation_p.D1846N|TTN_uc002unb.2_Missense_Mutation_p.D1892N|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1892							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGATACCATCATAGCGAACT	0.483													34	57					0	0	0.004878	0	0
CALCRL	10203	broad.mit.edu	37	2	188225386	188225386	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:188225386G>A	uc002upv.3	-	10	1268	c.720C>T	c.(718-720)CTC>CTT	p.L240L	CALCRL_uc010frt.2_Silent_p.L240L	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	240	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			CCACCACAATGAGTGTGTGTA	0.403													4	12					0	0	0.000602	0	0
COL3A1	1281	broad.mit.edu	37	2	189861133	189861133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:189861133G>A	uc002uqj.1	+	24	1789	c.1672G>A	c.(1672-1674)GGA>AGA	p.G558R		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	558	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGGAAGTCAAGGAGAAAGTGG	0.378													13	21					0	0	0.001855	0	0
WDR75	84128	broad.mit.edu	37	2	190334817	190334817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:190334817C>T	uc002uql.1	+	17	1895	c.1835C>T	c.(1834-1836)CCT>CTT	p.P612L	WDR75_uc002uqm.1_Missense_Mutation_p.P548L|WDR75_uc002uqn.1_Missense_Mutation_p.P390L|WDR75_uc002uqo.1_Missense_Mutation_p.P390L	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	612						nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			GTATTTAAACCTAGTGAGCCA	0.423													15	48					0	0	0.004007	0	0
MSTN	2660	broad.mit.edu	37	2	190922147	190922147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:190922147G>A	uc002urp.2	-	3	1098	c.965C>T	c.(964-966)CCT>CTT	p.P322L		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	322					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity	p.P322L(1)		lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			ATGAGTATGAGGATATTTTTG	0.393													9	8					0	0	0.000673	0	0
STAT4	6775	broad.mit.edu	37	2	191905794	191905794	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:191905794C>T	uc002usm.1	-	15	1586	c.1332G>A	c.(1330-1332)TTG>TTA	p.L444L	STAT4_uc002usn.1_Silent_p.L444L|STAT4_uc010zgk.1_Silent_p.L289L|STAT4_uc002uso.2_Silent_p.L444L	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	444					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			CACCTACCTCCAAATCTATGG	0.383													37	72					0	0	0.001287	0	0
TMEFF2	23671	broad.mit.edu	37	2	192821082	192821082	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:192821082T>A	uc002utc.2	-	8	1162	c.768A>T	c.(766-768)GAA>GAT	p.E256D		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	256	Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			CTCTGGCACTTTCTTCTAATT	0.413													10	35					0	0	0.000673	0	0
DNAH7	56171	broad.mit.edu	37	2	196746715	196746715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:196746715C>T	uc002utj.3	-	36	5866	c.5765G>A	c.(5764-5766)GGA>GAA	p.G1922E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1922					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTTCCTATTCCCTGTTTATA	0.338													17	27					0	0	0.006122	0	0
HECW2	57520	broad.mit.edu	37	2	197297976	197297976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:197297976G>A	uc002utm.1	-	2	355	c.172C>T	c.(172-174)CGC>TGC	p.R58C		NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	58					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						AAGCTGGAGCGGCTCTCAGAA	0.582													24	45					0	0	0.005443	0	0
AOX1	316	broad.mit.edu	37	2	201473824	201473824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:201473824G>A	uc002uvx.2	+	11	1126	c.1025G>A	c.(1024-1026)GGA>GAA	p.G342E	AOX1_uc010zhf.1_5'Flank|AOX1_uc010fsu.2_5'Flank	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	342	FAD-binding PCMH-type.				inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	AAGCATTTGGGAACTCTGGCT	0.498													13	15					0	0	0.003163	0	0
CASP10	843	broad.mit.edu	37	2	202074097	202074097	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:202074097C>T	uc002uxl.1	+	9	1645	c.1227C>T	c.(1225-1227)TCC>TCT	p.S409S	CASP10_uc002uxj.1_Silent_p.S409S|CASP10_uc002uxk.1_Silent_p.S366S|CASP10_uc010fta.1_Silent_p.S342S|CASP10_uc002uxm.1_Silent_p.S366S|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	409					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						TACAGCCTTCCGTATCCATCG	0.532													15	52					0	0	0.004007	0	0
NBEAL1	65065	broad.mit.edu	37	2	204045169	204045169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:204045169C>T	uc002uzt.3	+	42	6775	c.6442C>T	c.(6442-6444)CCA>TCA	p.P2148S	NBEAL1_uc002uzs.3_Missense_Mutation_p.P858S	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2148	BEACH.						binding			ovary(1)|skin(1)	2						TATGGATAATCCATATGATGT	0.333													172	289					0	0	0.003610	0	0
ICOS	29851	broad.mit.edu	37	2	204820508	204820508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:204820508G>A	uc002vam.2	+	2	275	c.208G>A	c.(208-210)GGA>AGA	p.G70R	ICOS_uc010zip.1_Missense_Mutation_p.G70R|ICOS_uc010fua.2_Missense_Mutation_p.G70R	NM_012092	NP_036224	Q9Y6W8	ICOS_HUMAN	inducible T-cell co-stimulator precursor	70	Ig-like V-type.|Extracellular (Potential).				immune response|T cell costimulation	extracellular region					0						TAAGACAAAAGGAAGTGGAAA	0.383													15	27					0	0	0.004990	0	0
PARD3B	117583	broad.mit.edu	37	2	205986523	205986523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:205986523C>T	uc002var.1	+	8	1222	c.1015C>T	c.(1015-1017)CCT>TCT	p.P339S	PARD3B_uc010fub.1_Missense_Mutation_p.P339S|PARD3B_uc002vao.1_Missense_Mutation_p.P339S|PARD3B_uc002vap.1_Missense_Mutation_p.P339S|PARD3B_uc002vaq.1_Missense_Mutation_p.P339S	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	339					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		AACCGATAGTCCTGAAACAGA	0.488													22	25					0	0	0.003330	0	0
PARD3B	117583	broad.mit.edu	37	2	206364732	206364732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:206364732C>T	uc002var.1	+	21	3364	c.3157C>T	c.(3157-3159)CCA>TCA	p.P1053S	PARD3B_uc002vao.1_Missense_Mutation_p.P952S|PARD3B_uc002vap.1_Missense_Mutation_p.P991S|PARD3B_uc002vaq.1_Missense_Mutation_p.P984S	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	1053					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		AAGAGCAAGGCCATCTGAGTA	0.448													18	78					0	0	0.001523	0	0
ZDBF2	57683	broad.mit.edu	37	2	207172439	207172439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:207172439G>A	uc002vbp.2	+	5	3437	c.3187G>A	c.(3187-3189)GAA>AAA	p.E1063K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1063							nucleic acid binding|zinc ion binding			ovary(3)	3						TTTTTTGAAGGAAAAACATGT	0.323													25	24					0	0	0.001061	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208795654	208795654	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:208795654G>T	uc002vcl.2	-	5	2372	c.1882C>A	c.(1882-1884)CGC>AGC	p.R628S	PLEKHM3_uc002vcm.2_Missense_Mutation_p.R628S	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	628					intracellular signal transduction		metal ion binding			ovary(1)	1						TCTTACCTGCGGCGGAGATCC	0.622													40	30					6.68952e-21	1.32177e-20	0.003214	1	0
CRYGB	1419	broad.mit.edu	37	2	209010568	209010568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:209010568C>T	uc002vcp.3	-	2	215	c.182G>A	c.(181-183)GGG>GAG	p.G61E		NM_005210	NP_005201	P07316	CRGB_HUMAN	crystallin, gamma B	61	Beta/gamma crystallin 'Greek key' 2.				visual perception		structural constituent of eye lens				0				Epithelial(149;0.0641)|LUSC - Lung squamous cell carcinoma(261;0.0703)|Lung(261;0.132)		AGGGTACTCCCCACGCCGCAG	0.612													16	37					0	0	0.003163	0	0
PTH2R	5746	broad.mit.edu	37	2	209358047	209358047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:209358047G>A	uc002vdb.2	+	13	1529	c.1316G>A	c.(1315-1317)AGG>AAG	p.R439K	PTH2R_uc010zjb.1_Missense_Mutation_p.R450K|PTH2R_uc010fuo.1_Intron	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	439	Cytoplasmic (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GACTGGAAAAGGACACCGCCA	0.587													14	29					0	0	0.002450	0	0
ERBB4	2066	broad.mit.edu	37	2	212251679	212251679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:212251679C>T	uc002veg.1	-	27	3478	c.3380G>A	c.(3379-3381)AGG>AAG	p.R1127K	ERBB4_uc002veh.1_Missense_Mutation_p.R1111K|ERBB4_uc010zji.1_Missense_Mutation_p.R1117K|ERBB4_uc010zjj.1_Missense_Mutation_p.R1101K	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	1127	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		AGCACTGTACCTCTGGGTGCT	0.552										TSP Lung(8;0.080)			14	37					0	0	0.004990	0	0
ABCA12	26154	broad.mit.edu	37	2	215815627	215815627	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:215815627G>C	uc002vew.2	-	45	7048	c.6828C>G	c.(6826-6828)ATC>ATG	p.I2276M	ABCA12_uc002vev.2_Missense_Mutation_p.I1958M|ABCA12_uc010zjn.1_Missense_Mutation_p.I1203M	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2276	ABC transporter 2.|Helical; (Potential).				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TCCCAATGCTGATGTTGTTTA	0.358													21	35					0	0	0.002299	0	0
ABCA12	26154	broad.mit.edu	37	2	215865485	215865485	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:215865485G>A	uc002vew.2	-	22	3343	c.3123C>T	c.(3121-3123)TCC>TCT	p.S1041S	ABCA12_uc002vev.2_Silent_p.S723S|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1041					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTATTTCCTGGGAGTTCCTTC	0.388													5	74					0	0	0.000602	0	0
ABCA12	26154	broad.mit.edu	37	2	215866380	215866380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:215866380G>A	uc002vew.2	-	21	2985	c.2765C>T	c.(2764-2766)TCC>TTC	p.S922F	ABCA12_uc002vev.2_Missense_Mutation_p.S604F|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	922					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TACACAAGAGGAAATATTTAC	0.368													12	40					0	0	0.001368	0	0
CCDC108	255101	broad.mit.edu	37	2	219888010	219888010	+	Silent	SNP	G	A	A	rs144661790		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:219888010G>A	uc002vjl.1	-	16	2823	c.2739C>T	c.(2737-2739)TTC>TTT	p.F913F		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	913	MSP.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCTCCACTCGAACTGCAGGG	0.627													20	21					0	0	0.003330	0	0
FAM134A	79137	broad.mit.edu	37	2	220046990	220046990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:220046990G>A	uc002vjw.3	+	9	1407	c.1271G>A	c.(1270-1272)TGC>TAC	p.C424Y	FAM134A_uc010fwc.2_Missense_Mutation_p.C217Y|FAM134A_uc002vjx.2_Missense_Mutation_p.C217Y	NM_024293	NP_077269	Q8NC44	F134A_HUMAN	hypothetical protein LOC79137	424						endoplasmic reticulum|integral to membrane				ovary(1)|central_nervous_system(1)	2		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGAGTGAAATGCTCCCCTGGA	0.597													28	67					0	0	0.001061	0	0
OBSL1	23363	broad.mit.edu	37	2	220420890	220420890	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:220420890C>T	uc010fwk.2	-	14	4518	c.4461G>A	c.(4459-4461)GGG>GGA	p.G1487G	OBSL1_uc002vmh.1_Silent_p.G386G|OBSL1_uc010zli.1_Silent_p.G294G|OBSL1_uc010fwl.1_Silent_p.G962G	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	1487	Ig-like 12.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		GCAGGGGCTGCCCACCTCGCA	0.667													11	12					0	0	0.000978	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446890	226446890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:226446890C>T	uc002voe.2	+	4	932	c.757C>T	c.(757-759)CTC>TTC	p.L253F	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.L23F	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	253										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GGGGAACATTCTCAGAGACTT	0.592													24	99					0	0	0.003330	0	0
COL4A4	1286	broad.mit.edu	37	2	227924234	227924234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:227924234C>T	uc010zlt.1	-	28	2924	c.2270G>A	c.(2269-2271)GGA>GAA	p.G757E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	757	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCCGGGATTCCTTTCTGACC	0.607													38	54					0	0	0.004878	0	0
SPHKAP	80309	broad.mit.edu	37	2	228846549	228846549	+	Missense_Mutation	SNP	G	A	A	rs62621004		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:228846549G>A	uc002vpq.2	-	12	5034	c.4987C>T	c.(4987-4989)CGG>TGG	p.R1663W	SPHKAP_uc002vpp.2_Missense_Mutation_p.R1634W|SPHKAP_uc010zlx.1_3'UTR	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1663						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CAGGACTTCCGATGAACCAGC	0.493													18	19					0	0	0.002299	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882851	228882851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:228882851C>T	uc002vpq.2	-	7	2766	c.2719G>A	c.(2719-2721)GAC>AAC	p.D907N	SPHKAP_uc002vpp.2_Missense_Mutation_p.D907N|SPHKAP_uc010zlx.1_Missense_Mutation_p.D907N	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	907						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGCAGCAGGTCATCCCCTAAC	0.488													27	129					0	0	0.005443	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883626	228883626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:228883626C>T	uc002vpq.2	-	7	1991	c.1944G>A	c.(1942-1944)ATG>ATA	p.M648I	SPHKAP_uc002vpp.2_Missense_Mutation_p.M648I|SPHKAP_uc010zlx.1_Missense_Mutation_p.M648I	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	648						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AAGCAGTTTCCATGATTCTCC	0.468													16	61					0	0	0.004007	0	0
DNER	92737	broad.mit.edu	37	2	230377581	230377581	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:230377581C>T	uc002vpv.2	-	6	1212	c.1065G>A	c.(1063-1065)AGG>AGA	p.R355R	DNER_uc010zly.1_Silent_p.R83R	NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	355	Extracellular (Potential).|EGF-like 4.				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		GGCAAGGTTTCCTCTGGCAAG	0.438													29	32					0	0	0.002096	0	0
FBXO36	130888	broad.mit.edu	37	2	230875580	230875580	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:230875580C>T	uc002vqa.2	+	4	570	c.547C>T	c.(547-549)CTG>TTG	p.L183L	FBXO36_uc002vqb.2_Silent_p.L152L|FBXO36_uc010fxi.1_Intron|FBXO36_uc002vqc.2_RNA	NM_174899	NP_777559	Q8NEA4	FBX36_HUMAN	F-box protein 36	183										ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0179)|Lung NSC(271;0.0804)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;7.56e-14)|all cancers(144;7.74e-11)|Lung(119;0.00488)|LUSC - Lung squamous cell carcinoma(224;0.008)		ATATGGAAACCTGAGAGAAAA	0.522													4	11					0	0	0.000248	0	0
CHRND	1144	broad.mit.edu	37	2	233394806	233394806	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:233394806C>T	uc002vsw.2	+	7	781	c.777C>T	c.(775-777)CTC>CTT	p.L259L	CHRND_uc010zmg.1_Silent_p.L244L|CHRND_uc010fyc.2_Silent_p.L132L|CHRND_uc010zmh.1_Intron	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	259	Helical; (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		CCTGCGTGCTCATCTCCTTCA	0.627													11	44					0	0	0.003163	0	0
SAG	6295	broad.mit.edu	37	2	234237135	234237135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:234237135G>A	uc002vuh.2	+	8	912	c.524G>A	c.(523-525)CGA>CAA	p.R175Q	SAG_uc010zmq.1_Missense_Mutation_p.R41Q	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	175					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		AGCTCCGTGCGATTACTGATC	0.592													22	80					0	0	0.005443	0	0
MSL3L2	151507	broad.mit.edu	37	2	234774899	234774900	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:234774899_234774900TC>CT	uc010znf.1	-	2	1180_1181	c.942_943GA>AG	c.(940-945)TTGAAG>TTAGAG	p.K315E		NR_024322				SubName: Full=cDNA FLJ52683, highly similar to Male-specific lethal 3-like 1; SubName: Full=cDNA, FLJ79271, highly similar to Male-specific lethal 3-like 1; SubName: Full=HCG1642047;												0						TCAAAGTGCTTCAATAAAGCCT	0.431													13	52					0	0	0.004672	0	0
COL6A3	1293	broad.mit.edu	37	2	238263553	238263553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:238263553G>A	uc002vwl.2	-	24	6901	c.6616C>T	c.(6616-6618)CCC>TCC	p.P2206S	COL6A3_uc002vwo.2_Missense_Mutation_p.P2000S|COL6A3_uc010znj.1_Missense_Mutation_p.P1599S|COL6A3_uc002vwp.1_Missense_Mutation_p.P27S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2206	Triple-helical region.|Collagen-like 3.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TTAGCTCCGGGGGGTCCCCTT	0.582													4	20					0	0	0.001168	0	0
LRRFIP1	9208	broad.mit.edu	37	2	238671681	238671681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:238671681C>T	uc002vxe.2	+	11	1617	c.1325C>T	c.(1324-1326)CCT>CTT	p.P442L	LRRFIP1_uc002vxc.2_Intron|LRRFIP1_uc010znm.1_Intron|LRRFIP1_uc002vxd.2_Missense_Mutation_p.P418L|LRRFIP1_uc002vxf.2_Missense_Mutation_p.P386L	NM_001137552	NP_001131024	Q32MZ4	LRRF1_HUMAN	leucine rich repeat (in FLII) interacting	442					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|cytoskeleton|nucleus	DNA binding|double-stranded RNA binding|protein binding			breast(3)	3		Breast(86;0.00257)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;9.75e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.01e-10)|Kidney(56;4.85e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.31e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000151)|Lung(119;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0325)|COAD - Colon adenocarcinoma(134;0.228)		GCCTCGTGTCCTTTAGGGCAT	0.483													17	72					0	0	0.001523	0	0
ESPNL	339768	broad.mit.edu	37	2	239039894	239039894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:239039894C>T	uc002vxq.3	+	9	2649	c.2539C>T	c.(2539-2541)CCG>TCG	p.P847S	ESPNL_uc010fyw.2_Missense_Mutation_p.P543S	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	847										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GGACGGGGCTCCGGTGCCCTA	0.697													3	3					0	0	0.004672	0	0
PER2	8864	broad.mit.edu	37	2	239161848	239161848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:239161848G>A	uc002vyc.2	-	19	3053	c.2816C>T	c.(2815-2817)TCC>TTC	p.S939F	PER2_uc010znv.1_Missense_Mutation_p.S939F	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	939	Pro-rich.				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GGCCATCTCGGATGTGAGTGT	0.642													19	60					0	0	0.000958	0	0
RNPEPL1	57140	broad.mit.edu	37	2	241516377	241516377	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:241516377C>T	uc002vzi.2	+	10	1754	c.1161C>T	c.(1159-1161)CTC>CTT	p.L387L	RNPEPL1_uc010fzf.2_Silent_p.L293L|RNPEPL1_uc002vzj.2_Silent_p.L35L	NM_018226	NP_060696	Q9HAU8	RNPL1_HUMAN	arginyl aminopeptidase (aminopeptidase B)-like	387					leukotriene biosynthetic process|proteolysis		aminopeptidase activity|metallopeptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2		all_epithelial(40;1.13e-11)|Breast(86;0.000169)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.204)|Melanoma(123;0.238)		Epithelial(32;3.05e-31)|all cancers(36;8.2e-29)|OV - Ovarian serous cystadenocarcinoma(60;8.55e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.12e-06)|Lung(119;0.00168)|Colorectal(34;0.005)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.0322)		ATCCTGACCTCCACAGGGTGC	0.652													17	61					0	0	0.001216	0	0
DEFB129	140881	broad.mit.edu	37	20	209998	209998	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:209998G>A	uc002wda.2	+	2	143	c.138G>A	c.(136-138)CAG>CAA	p.Q46Q		NM_080831	NP_543021	Q9H1M3	DB129_HUMAN	beta defensin 129 precursor	46					defense response to bacterium	extracellular region				ovary(1)	1		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			AAGAGATACAGAAATGCAAGA	0.363													21	33					0	0	0.002780	0	0
SIRPB1	10326	broad.mit.edu	37	20	1600548	1600548	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:1600548G>A	uc010gai.2	-	1	142	c.43C>T	c.(43-45)CTG>TTG	p.L15L	SIRPB1_uc002wfk.3_Silent_p.L15L|SIRPB1_uc002wfl.3_Silent_p.L15L	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	15					cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GTCATCAGCAGGAAAGGACTA	0.567													13	49					0	0	0.003163	0	0
TGM6	343641	broad.mit.edu	37	20	2384303	2384303	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:2384303C>T	uc002wfy.1	+	9	1231	c.1170C>T	c.(1168-1170)TTC>TTT	p.F390F	TGM6_uc010gal.1_Silent_p.F390F	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	390					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	ATGGCCCCTTCGTGTTTGCGG	0.617													27	52					0	0	0.003954	0	0
ADAM33	80332	broad.mit.edu	37	20	3655221	3655221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:3655221C>T	uc002wit.2	-	6	617	c.530G>A	c.(529-531)GGA>GAA	p.G177E	ADAM33_uc002wir.1_Missense_Mutation_p.G177E|ADAM33_uc002wis.2_5'Flank|ADAM33_uc002wiu.2_Missense_Mutation_p.G177E|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Intron|ADAM33_uc010zqg.1_Missense_Mutation_p.G189E|ADAM33_uc010zqh.1_Missense_Mutation_p.G177E	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	177	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GCCACAGGTTCCTTTCCAGGT	0.607													45	85					0	0	0.003610	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3687268	3687268	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:3687268G>A	uc002wja.2	-	2	135	c.135C>T	c.(133-135)TTC>TTT	p.F45F	SIGLEC1_uc002wiz.3_Silent_p.F45F|SIGLEC1_uc002wjc.2_5'UTR	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	45	Ig-like V-type.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CGTCGGCAGGGAAGCTGAAGA	0.662													3	4					0	0	0.004672	0	0
ADRA1D	146	broad.mit.edu	37	20	4228517	4228517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:4228517G>A	uc002wkr.2	-	1	1143	c.1088C>T	c.(1087-1089)CCT>CTT	p.P363L		NM_000678	NP_000669	P25100	ADA1D_HUMAN	alpha-1D-adrenergic receptor	363	Helical; Name=6; (By similarity).				cell proliferation|cell-cell signaling|DNA metabolic process|G-protein signaling, coupled to cAMP nucleotide second messenger|multicellular organismal development|positive regulation of cell proliferation	integral to plasma membrane	alpha1-adrenergic receptor activity				0					Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Methotrimeprazine(DB01403)|Norepinephrine(DB00368)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)	AAAGAAGAAAGGGAACCAGCA	0.632													7	11					0	0	0.003080	0	0
SLC23A2	9962	broad.mit.edu	37	20	4839988	4839988	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:4839988G>T	uc002wlg.1	-	16	2042	c.1667C>A	c.(1666-1668)ACT>AAT	p.T556N	SLC23A2_uc010zqr.1_Missense_Mutation_p.T441N|SLC23A2_uc002wlh.1_Missense_Mutation_p.T556N	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	556	Helical; (Potential).				L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						AAACATAGCAGTTGTGAGAAG	0.428													83	125					1.14069e-49	2.2621e-49	0.003610	1	0
TMX4	56255	broad.mit.edu	37	20	7980462	7980462	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:7980462G>A	uc002wmx.1	-	4	517	c.384C>T	c.(382-384)TTC>TTT	p.F128F		NM_021156	NP_066979	Q9H1E5	TMX4_HUMAN	thioredoxin-related transmembrane protein 4	128	Thioredoxin.				cell redox homeostasis|electron transport chain|transport	integral to membrane					0						GCAGGTCTTCGAAGATTCCTG	0.398													8	22					0	0	0.004482	0	0
PLCB1	23236	broad.mit.edu	37	20	8862293	8862293	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:8862293T>G	uc002wnb.2	+	32	3451	c.3448T>G	c.(3448-3450)TAC>GAC	p.Y1150D	PLCB1_uc002wna.2_3'UTR	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1150					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GGAGCAAGAATACCAAGACAA	0.458													33	86					0	0	0.004878	0	0
C20orf103	24141	broad.mit.edu	37	20	9510386	9510386	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:9510386G>A	uc002wni.1	+	6	991	c.762G>A	c.(760-762)GCG>GCA	p.A254A	C20orf103_uc010zrc.1_Silent_p.A210A	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	254	Helical; (Potential).					integral to membrane		p.A254V(1)		upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			TAACACTCGCGATTTACCACG	0.547													24	40					0	0	0.004656	0	0
PAK7	57144	broad.mit.edu	37	20	9561044	9561044	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:9561044G>A	uc002wnl.2	-	5	1283	c.738C>T	c.(736-738)TCC>TCT	p.S246S	PAK7_uc002wnk.2_Silent_p.S246S|PAK7_uc002wnj.2_Silent_p.S246S|PAK7_uc010gby.1_Silent_p.S246S	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	246	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GGCTCTCCTTGGAGCACCCGC	0.537													30	47					0	0	0.001061	0	0
PAK7	57144	broad.mit.edu	37	20	9561046	9561046	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:9561046A>T	uc002wnl.2	-	5	1281	c.736T>A	c.(736-738)TCC>ACC	p.S246T	PAK7_uc002wnk.2_Missense_Mutation_p.S246T|PAK7_uc002wnj.2_Missense_Mutation_p.S246T|PAK7_uc010gby.1_Missense_Mutation_p.S246T	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	246	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTCTCCTTGGAGCACCCGCTG	0.532													29	47					0	0	0.005443	0	0
C20orf94	128710	broad.mit.edu	37	20	10603430	10603430	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:10603430T>C	uc010zre.1	+	8	810	c.630T>C	c.(628-630)GCT>GCC	p.A210A		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	210							protein binding				0						ATGGTCAGGCTTCCTCCAGTC	0.498													25	41					0	0	0.001061	0	0
SPTLC3	55304	broad.mit.edu	37	20	13053030	13053030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:13053030G>A	uc002wod.1	+	3	719	c.430G>A	c.(430-432)GTA>ATA	p.V144I		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	144					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GATGGAGAGGGTATCAGACGA	0.443													85	248					0	0	0.003610	0	0
ESF1	51575	broad.mit.edu	37	20	13756650	13756650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:13756650G>A	uc002woj.2	-	3	1012	c.904C>T	c.(904-906)CTT>TTT	p.L302F	ESF1_uc002wok.1_Missense_Mutation_p.L302F	NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	302	Asp-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						CCCCTTGCAAGATCAGGGCCA	0.249													54	95					0	0	0.003610	0	0
BFSP1	631	broad.mit.edu	37	20	17475601	17475601	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:17475601C>T	uc002wpo.2	-	8	1155	c.1116G>A	c.(1114-1116)AGG>AGA	p.R372R	BFSP1_uc002wpp.2_Silent_p.R247R|BFSP1_uc010zrn.1_Silent_p.R233R|BFSP1_uc010zro.1_Silent_p.R233R	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	372	Tail.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						TCTCTTTTCTCCTTGGAACAT	0.418													70	131					0	0	0.003610	0	0
SSTR4	6754	broad.mit.edu	37	20	23016549	23016549	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:23016549C>T	uc002wsr.2	+	1	493	c.429C>T	c.(427-429)GAC>GAT	p.D143D		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	143	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TCAGCGTGGACCGCTACGTGG	0.687													20	37					0	0	0.001523	0	0
CD93	22918	broad.mit.edu	37	20	23065195	23065195	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:23065195C>T	uc002wsv.2	-	1	1783	c.1635G>A	c.(1633-1635)AGG>AGA	p.R545R		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	545	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TGCTGGGCTCCCTCCAGACGC	0.642													28	50					0	0	0.001271	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524132	24524132	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:24524132C>T	uc002wtw.1	+	2	1032	c.399C>T	c.(397-399)TTC>TTT	p.F133F		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	133	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						ATGGGAAGTTCATTGACCTCT	0.587													49	91					0	0	0.003610	0	0
BPIL3	128859	broad.mit.edu	37	20	31622587	31622587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:31622587G>A	uc010zuc.1	+	4	321	c.321G>A	c.(319-321)ATG>ATA	p.M107I	BPIL3_uc010zud.1_Missense_Mutation_p.M46I	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	107						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						GAGGGAACATGGAGATCATCG	0.587													8	105					0	0	0.004482	0	0
C20orf70	140683	broad.mit.edu	37	20	31760863	31760863	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:31760863A>G	uc002wyo.1	+	3	354	c.283A>G	c.(283-285)ACT>GCT	p.T95A		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	95						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						GCTGCTTCCAACTAACACGGA	0.448													4	96					0	0	0.000248	0	0
FAM83C	128876	broad.mit.edu	37	20	33879631	33879631	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:33879631C>T	uc010zux.1	-	1	595	c.477G>A	c.(475-477)AAG>AAA	p.K159K	FAM83C_uc002xcb.1_5'UTR	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	159										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GCAGCAGGTCCTTGATGTTCT	0.468													47	87					0	0	0.003610	0	0
CEP250	11190	broad.mit.edu	37	20	34067172	34067172	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:34067172G>A	uc002xcm.2	+	19	2882	c.2211G>A	c.(2209-2211)GAG>GAA	p.E737E	CEP250_uc010zve.1_Silent_p.E105E	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	737	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			TAGTACGAGAGAAAGCGGCTC	0.617													50	94					0	0	0.003610	0	0
LPIN3	64900	broad.mit.edu	37	20	39986637	39986637	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:39986637C>A	uc002xjx.2	+	17	2246	c.2155C>A	c.(2155-2157)CTT>ATT	p.L719I	LPIN3_uc010ggh.2_Missense_Mutation_p.L720I|LPIN3_uc010zwf.1_Intron	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	719	C-LIP.				fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				GGGCCCCATCCTTCTGTCTCC	0.662													16	36					1.45105e-14	2.8567e-14	0.006122	1	0
CHD6	84181	broad.mit.edu	37	20	40081467	40081467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:40081467G>A	uc002xka.1	-	21	3414	c.3236C>T	c.(3235-3237)CCC>CTC	p.P1079L		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1079					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GGATCTCGTGGGCCTTTCGTC	0.547													33	76					0	0	0.002836	0	0
PTPRT	11122	broad.mit.edu	37	20	40730817	40730817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:40730817G>A	uc002xkg.2	-	26	3845	c.3661C>T	c.(3661-3663)CTT>TTT	p.L1221F	PTPRT_uc010ggj.2_Missense_Mutation_p.L1240F|PTPRT_uc010ggi.2_Missense_Mutation_p.L424F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1221	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACTGAGATAAGGAAGGGCAGG	0.577													26	48					0	0	0.002096	0	0
PTPRT	11122	broad.mit.edu	37	20	40747085	40747085	+	Silent	SNP	G	A	A	rs34284587		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:40747085G>A	uc002xkg.2	-	21	3124	c.2940C>T	c.(2938-2940)TCC>TCT	p.S980S	PTPRT_uc010ggj.2_Silent_p.S999S|PTPRT_uc010ggi.2_Silent_p.S183S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	980	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CGATGCTGGCGGAGTTCTCCT	0.537													33	55					0	0	0.001706	0	0
PTPRT	11122	broad.mit.edu	37	20	41076894	41076894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:41076894G>A	uc002xkg.2	-	9	1710	c.1526C>T	c.(1525-1527)CCC>CTC	p.P509L	PTPRT_uc010ggj.2_Missense_Mutation_p.P509L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	509	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGTCTCATTGGGAGGTTTCCA	0.483													24	69					0	0	0.005443	0	0
PTPRT	11122	broad.mit.edu	37	20	41306585	41306585	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:41306585G>A	uc002xkg.2	-	7	1258	c.1074C>T	c.(1072-1074)ATC>ATT	p.I358I	PTPRT_uc010ggj.2_Silent_p.I358I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	358	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGAGCACTCGGATCTCATACT	0.562													29	90					0	0	0.003271	0	0
L3MBTL	26013	broad.mit.edu	37	20	42162677	42162677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:42162677G>A	uc010zwh.1	+	14	1523	c.1477G>A	c.(1477-1479)GAG>AAG	p.E493K	L3MBTL_uc002xkl.2_Missense_Mutation_p.E425K|L3MBTL_uc002xkm.2_Missense_Mutation_p.E425K|L3MBTL_uc010ggl.2_Missense_Mutation_p.E425K|L3MBTL_uc002xkn.1_Missense_Mutation_p.E184K|L3MBTL_uc002xko.2_Missense_Mutation_p.E77K	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	425	MBT 3.				chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CTTCTGTTGGGAGAAATATCT	0.567													35	76					0	0	0.001287	0	0
TOX2	84969	broad.mit.edu	37	20	42682973	42682973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:42682973G>A	uc002xlf.3	+	5	730	c.713G>A	c.(712-714)GGA>GAA	p.G238E	TOX2_uc010ggo.2_Missense_Mutation_p.G229E|TOX2_uc002xle.3_Missense_Mutation_p.G187E|TOX2_uc010ggp.2_Missense_Mutation_p.G187E|TOX2_uc002xlg.2_Missense_Mutation_p.G187E|TOX2_uc010zwk.1_Missense_Mutation_p.G107E	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	238	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GCCGACCCAGGAAAAAAGGCC	0.537													9	14					0	0	0.000978	0	0
WFDC6	140870	broad.mit.edu	37	20	44167999	44167999	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:44167999C>T	uc002xos.1	-	1	136	c.48G>A	c.(46-48)TTG>TTA	p.L16L	SPINLW1_uc010zxc.1_Intron	NM_080827	NP_543017	Q9BQY6	WFDC6_HUMAN	WAP four-disulfide core domain 6 precursor	16						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GGATGTCCCCCAAAAGGATGA	0.517													22	50					0	0	0.002780	0	0
WFDC10B	280664	broad.mit.edu	37	20	44314629	44314629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:44314629C>T	uc002xpb.2	-	3	234	c.3G>A	c.(1-3)ATG>ATA	p.M1I	WFDC10B_uc002xpc.2_Intron	NM_172006	NP_742003	Q8IUB3	WF10B_HUMAN	WAP four-disulfide core domain 10B isoform a	1						extracellular region	peptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TCTGGGGTGCCATAACTCTGA	0.557													5	16					0	0	0.000602	0	0
ZNF335	63925	broad.mit.edu	37	20	44589505	44589505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:44589505G>A	uc002xqw.2	-	11	1786	c.1663C>T	c.(1663-1665)CCG>TCG	p.P555S	ZNF335_uc010zxk.1_Missense_Mutation_p.P400S	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	555					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				AGACTCACCGGATCTGGCCTC	0.587													8	18					0	0	0.000443	0	0
SLC12A5	57468	broad.mit.edu	37	20	44678403	44678403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:44678403C>T	uc010zxl.1	+	17	2300	c.2224C>T	c.(2224-2226)CAT>TAT	p.H742Y	SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.H719Y	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	742					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TCTGGAAAATCATCCACAGGC	0.577													6	9					0	0	0.001984	0	0
SLC12A5	57468	broad.mit.edu	37	20	44684844	44684844	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:44684844A>G	uc010zxl.1	+	22	2988	c.2912A>G	c.(2911-2913)AAC>AGC	p.N971S	SLC12A5_uc002xrb.2_Missense_Mutation_p.N948S	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	971	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	AATCCAGCCAACACGCGGCTC	0.572													31	40					0	0	0.002445	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870614	51870614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:51870614G>A	uc002xwo.2	+	2	1573	c.617G>A	c.(616-618)GGG>GAG	p.G206E		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	206					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AAGATGTGCGGGACTGTGTTC	0.582													21	36					0	0	0.002780	0	0
BCAS1	8537	broad.mit.edu	37	20	52611550	52611550	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:52611550C>T	uc002xws.2	-	6	1265	c.927_splice	c.e6+1	p.T309_splice	BCAS1_uc010zza.1_Splice_Site_p.T22_splice|BCAS1_uc010zzb.1_Splice_Site_p.T212_splice|BCAS1_uc010gim.2_Splice_Site_p.T212_splice|BCAS1_uc002xwt.2_Splice_Site_p.T309_splice|BCAS1_uc010gil.1_Splice_Site_p.T309_splice	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1							cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			CAACTACCTACCGTGTCTTCT	0.333													7	202					0	0	0.000443	0	0
CASS4	57091	broad.mit.edu	37	20	55027236	55027236	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:55027236T>C	uc002xxp.2	+	6	1229	c.1004T>C	c.(1003-1005)TTT>TCT	p.F335S	CASS4_uc002xxq.3_Missense_Mutation_p.F335S|CASS4_uc002xxr.2_Missense_Mutation_p.F335S|CASS4_uc010zze.1_Missense_Mutation_p.F281S|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	335					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CCTTCAAGCTTTCTGATTCCC	0.453													3	88					0	0	0.004672	0	0
CASS4	57091	broad.mit.edu	37	20	55027872	55027872	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:55027872T>C	uc002xxp.2	+	6	1865	c.1640T>C	c.(1639-1641)CTT>CCT	p.L547P	CASS4_uc002xxq.3_Missense_Mutation_p.L547P|CASS4_uc002xxr.2_Missense_Mutation_p.L547P|CASS4_uc010zze.1_Missense_Mutation_p.L493P|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	547					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CTGGAAGTTCTTGTGACTGAC	0.493													33	55					0	0	0.004878	0	0
CTCFL	140690	broad.mit.edu	37	20	56094315	56094315	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:56094315C>T	uc010gix.1	-	3	1535	c.873G>A	c.(871-873)CTG>CTA	p.L291L	CTCFL_uc010giw.1_Silent_p.L291L|CTCFL_uc002xym.2_Silent_p.L291L|CTCFL_uc010giz.1_5'UTR|CTCFL_uc010giy.1_5'UTR|CTCFL_uc010gja.1_Silent_p.L291L|CTCFL_uc010gjb.1_Silent_p.L291L|CTCFL_uc010gjc.1_Silent_p.L291L|CTCFL_uc010gjd.1_Silent_p.L291L|CTCFL_uc010gje.2_Silent_p.L291L|CTCFL_uc010gjf.2_Silent_p.L86L|CTCFL_uc010gjg.2_Silent_p.L23L|CTCFL_uc010gjh.1_Silent_p.L291L|CTCFL_uc010gji.1_Silent_p.L86L|CTCFL_uc010gjj.1_Silent_p.L291L|CTCFL_uc010gjk.1_Silent_p.L291L|CTCFL_uc010gjl.1_Silent_p.L291L	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	291	C2H2-type 2.				cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			GGAAGGTTTTCAGGCAGAGGT	0.473													33	66					0	0	0.004289	0	0
PMEPA1	56937	broad.mit.edu	37	20	56227201	56227201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:56227201C>T	uc002xyq.2	-	4	1165	c.772G>A	c.(772-774)GGG>AGG	p.G258R	PMEPA1_uc002xyr.2_Missense_Mutation_p.G208R|PMEPA1_uc002xys.2_Missense_Mutation_p.G223R|PMEPA1_uc002xyt.2_Missense_Mutation_p.G208R	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	258	Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						AGCCGGGTCCCCTCCAGCAAG	0.647													6	3					0	0	0.001984	0	0
CDH4	1002	broad.mit.edu	37	20	60498741	60498741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:60498741G>A	uc002ybn.1	+	10	1621	c.1607G>A	c.(1606-1608)CGG>CAG	p.R536Q	CDH4_uc002ybp.1_Missense_Mutation_p.R462Q	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	536	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GACCCTGACCGGTTCATGCAG	0.612													14	28					0	0	0.006122	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981641	61981641	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:61981641G>A	uc002yes.2	-	5	1300	c.1122C>T	c.(1120-1122)TCC>TCT	p.S374S	CHRNA4_uc002yet.1_Silent_p.S198S|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.S303S|CHRNA4_uc002yev.1_Silent_p.S198S|CHRNA4_uc010gkf.1_Silent_p.S198S	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	374	Cytoplasmic (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	TCTTATGCATGGACTCGATGA	0.672													11	11					0	0	0.001368	0	0
SRMS	6725	broad.mit.edu	37	20	62173646	62173646	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:62173646C>T	uc002yfi.1	-	5	857	c.816G>A	c.(814-816)AAG>AAA	p.K272K		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	272	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			TCTGGATCTCCTTGGCGAGGT	0.642													22	33					0	0	0.004656	0	0
MYT1	4661	broad.mit.edu	37	20	62839221	62839221	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr20:62839221C>T	uc002yii.2	+	7	1036	c.672C>T	c.(670-672)GTC>GTT	p.V224V	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	224	Glu-rich.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CCGAGGAGGTCGTCGAAGTCA	0.617													12	38					0	0	0.000978	0	0
POTED	317754	broad.mit.edu	37	21	14983034	14983034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:14983034G>A	uc002yjb.1	+	1	537	c.485G>A	c.(484-486)AGG>AAG	p.R162K		NM_174981	NP_778146	Q86YR6	POTED_HUMAN	pote protein	162						plasma membrane				ovary(3)|skin(3)	6						GTCATGCTCAGGGACACTGAC	0.572													28	15					0	0	0.001951	0	0
CYYR1	116159	broad.mit.edu	37	21	27945215	27945215	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:27945215C>T	uc002ymd.2	-	1	367	c.45G>A	c.(43-45)CCG>CCA	p.P15P	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Silent_p.P15P	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	15						integral to membrane					0						GGACCAACTTCGGAAGCAAGA	0.662													15	44					0	0	0.004990	0	0
RNF160	26046	broad.mit.edu	37	21	30329142	30329142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:30329142C>T	uc002ymr.2	-	16	3172	c.3159G>A	c.(3157-3159)ATG>ATA	p.M1053I		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	1007							ligase activity|zinc ion binding				0						CAATTAAGACCATTTTGCTCA	0.303													5	20					0	0	0.001984	0	0
BACH1	571	broad.mit.edu	37	21	30693685	30693685	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:30693685G>A	uc002ynj.2	+	2	199	c.84G>A	c.(82-84)CGG>CGA	p.R28R	BACH1_uc002ynk.2_Silent_p.R28R|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	28						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						ATGACCAGCGGAAGAAAGATG	0.493													26	62					0	0	0.001271	0	0
KRTAP6-3	337968	broad.mit.edu	37	21	31964965	31964965	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:31964965C>T	uc002yom.2	+	1	207	c.201C>T	c.(199-201)TCC>TCT	p.S67S		NM_181605	NP_853636			keratin associated protein 6-3												0						gctatggctccttctgtggct	0.129													6	12					0	0	0.001984	0	0
OLIG2	10215	broad.mit.edu	37	21	34399244	34399244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:34399244G>A	uc002yqx.1	+	2	232	c.74G>A	c.(73-75)CGG>CAG	p.R25Q		NM_005806	NP_005797	Q13516	OLIG2_HUMAN	oligodendrocyte lineage transcription factor 2	25						cytoplasm|nucleus|plasma membrane	DNA binding			central_nervous_system(2)	2						CTGCCGGCCCGGAGTAAGGGC	0.706			T	TRA@	T-ALL								12	24					0	0	0.000978	0	0
IFNAR2	3455	broad.mit.edu	37	21	34635543	34635543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:34635543C>T	uc002yrd.2	+	9	1614	c.1286C>T	c.(1285-1287)TCT>TTT	p.S429F	IFNAR2_uc002yre.2_Missense_Mutation_p.S429F|IFNAR2_uc002yrf.2_3'UTR|IL10RB_uc002yrh.1_Intron|IL10RB_uc002yri.1_Intron	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	429	Cytoplasmic (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	GACTTAAACTCTGTGTTTTTG	0.507													56	153					0	0	0.003610	0	0
CRYZL1	9946	broad.mit.edu	37	21	34994338	34994338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:34994338G>A	uc011adw.1	-	4	361	c.181C>T	c.(181-183)CCT>TCT	p.P61S	DONSON_uc002ysn.1_Intron|CRYZL1_uc002ysr.1_Missense_Mutation_p.P85S|CRYZL1_uc002yss.1_RNA|CRYZL1_uc002yst.1_RNA|CRYZL1_uc002ysu.2_Missense_Mutation_p.P61S	NM_145858	NP_665857	O95825	QORL1_HUMAN	crystallin, zeta-like 1	61					quinone cofactor metabolic process	cytosol	NADP binding|NADPH:quinone reductase activity|zinc ion binding				0						CTCCCAACAGGAAATAAATCC	0.313													32	104					0	0	0.001706	0	0
ATP5O	539	broad.mit.edu	37	21	35275880	35275880	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:35275880C>A	uc002ytl.2	-	7	683	c.592G>T	c.(592-594)GTC>TTC	p.V198F	DONSON_uc002ysn.1_Intron	NM_001697	NP_001688	P48047	ATPO_HUMAN	mitochondrial ATP synthase, O subunit precursor	198					ATP catabolic process|mitochondrial ATP synthesis coupled proton transport|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex|plasma membrane|proton-transporting ATP synthase complex, catalytic core F(1)	drug binding|hydrogen ion transporting ATP synthase activity, rotational mechanism			ovary(1)	1						TTGGTCTTGACAGACATGTCA	0.433													13	35					9.16793e-09	1.79189e-08	0.004990	1	0
HLCS	3141	broad.mit.edu	37	21	38132083	38132083	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:38132083G>A	uc010gnb.2	-	9	2941	c.1740C>T	c.(1738-1740)ATC>ATT	p.I580I	HLCS_uc002yvs.2_Silent_p.I580I	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	580					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	GAACTCCGCCGATCTTCATGA	0.373													26	64					0	0	0.002096	0	0
TTC3	7267	broad.mit.edu	37	21	38525433	38525433	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:38525433C>T	uc002yvz.2	+	27	2701	c.2596C>T	c.(2596-2598)CTA>TTA	p.L866L	TTC3_uc011aee.1_Silent_p.L556L|TTC3_uc002ywa.2_Silent_p.L866L|TTC3_uc002ywb.2_Silent_p.L866L|TTC3_uc010gnf.2_Silent_p.L631L|TTC3_uc002ywc.2_Silent_p.L556L|TTC3_uc011aed.1_Silent_p.L556L	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	866					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				CAGAAATTTTCTAAATGAAGC	0.353													38	99					0	0	0.005524	0	0
ETS2	2114	broad.mit.edu	37	21	40191655	40191655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:40191655C>T	uc002yxg.2	+	8	1236	c.1040C>T	c.(1039-1041)CCA>CTA	p.P347L	ETS2_uc002yxf.2_Missense_Mutation_p.P487L	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	347					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				CAAGGCAAACCAGTTATACCT	0.552													6	12					0	0	0.001168	0	0
BRWD1	54014	broad.mit.edu	37	21	40571568	40571568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:40571568C>T	uc002yxk.1	-	40	4913	c.4774G>A	c.(4774-4776)GGA>AGA	p.G1592R	BRWD1_uc010goc.1_Missense_Mutation_p.G235R|BRWD1_uc002yxl.2_Missense_Mutation_p.G1592R	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1592					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				CTGCCACATCCATTTGCTAAT	0.303											OREG0003861	type=REGULATORY REGION|Gene=BRWD1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	18	39					0	0	0.001523	0	0
BRWD1	54014	broad.mit.edu	37	21	40665885	40665885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:40665885G>A	uc002yxk.1	-	8	822	c.683C>T	c.(682-684)TCT>TTT	p.S228F	BRWD1_uc002yxl.2_Missense_Mutation_p.S228F	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	228	WD 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				AATTTCTGCAGAATGACCTCT	0.363													19	36					0	0	0.000958	0	0
DSCAM	1826	broad.mit.edu	37	21	41414351	41414351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:41414351G>A	uc002yyq.1	-	32	6085	c.5633C>T	c.(5632-5634)CCT>CTT	p.P1878L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1878	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCCATCCTGAGGTTTGGGGGG	0.572													20	30					0	0	0.001523	0	0
DSCAM	1826	broad.mit.edu	37	21	41559876	41559876	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:41559876G>A	uc002yyq.1	-	13	3044	c.2592C>T	c.(2590-2592)TCC>TCT	p.S864S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	864	Ig-like C2-type 9.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TAGCATGGCAGGAAAAGAAAC	0.388													10	34					0	0	0.000978	0	0
DSCAM	1826	broad.mit.edu	37	21	41711083	41711083	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:41711083C>T	uc002yyq.1	-	7	1922	c.1470G>A	c.(1468-1470)GCG>GCA	p.A490A	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	490	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGACGACTCCCGCCGAGTTGT	0.517													12	35					0	0	0.004990	0	0
DSCAM	1826	broad.mit.edu	37	21	42064779	42064779	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:42064779G>A	uc002yyq.1	-	3	917	c.465C>T	c.(463-465)ATC>ATT	p.I155I	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	155	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGACGACAGTGATGTACGCCT	0.522													21	40					0	0	0.001216	0	0
MX1	4599	broad.mit.edu	37	21	42821111	42821111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:42821111C>T	uc002yzh.2	+	16	2268	c.1321C>T	c.(1321-1323)CGT>TGT	p.R441C	MX1_uc002yzi.2_Missense_Mutation_p.R441C|MX1_uc010goq.2_Missense_Mutation_p.R441C	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	441					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				AAATCAGTATCGTGGTAGAGA	0.373													7	99					0	0	0.004482	0	0
MX1	4599	broad.mit.edu	37	21	42824749	42824749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:42824749G>A	uc002yzh.2	+	18	2658	c.1711G>A	c.(1711-1713)GAC>AAC	p.D571N	MX1_uc002yzi.2_Missense_Mutation_p.D571N|MX1_uc010goq.2_Missense_Mutation_p.D571N	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	571					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				CTCGGCAACAGACTCTTCCAT	0.498													10	182					0	0	0.000978	0	0
UMODL1	89766	broad.mit.edu	37	21	43533714	43533714	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:43533714C>T	uc002zaf.1	+	13	2136	c.2136C>T	c.(2134-2136)TCC>TCT	p.S712S	UMODL1_uc002zad.1_Silent_p.S640S|UMODL1_uc002zae.1_Silent_p.S768S|UMODL1_uc002zag.1_Silent_p.S840S	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	712	Extracellular (Potential).|Fibronectin type-III 2.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TCATGGTCTCCAATGTGACCA	0.517													11	24					0	0	0.001368	0	0
ABCG1	9619	broad.mit.edu	37	21	43702476	43702476	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:43702476C>T	uc002zaq.2	+	6	787	c.681C>T	c.(679-681)ATC>ATT	p.I227I	ABCG1_uc002zan.2_Silent_p.I229I|ABCG1_uc002zam.2_Silent_p.I205I|ABCG1_uc002zao.2_Silent_p.I224I|ABCG1_uc002zap.2_Silent_p.I227I|ABCG1_uc002zar.2_Silent_p.I238I|ABCG1_uc011aev.1_Silent_p.I238I	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	227	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GCCTGGCCATCGCGCTGGAGC	0.627													8	29					0	0	0.000443	0	0
PCBP3	54039	broad.mit.edu	37	21	47359972	47359972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:47359972G>A	uc002zhq.1	+	13	1063	c.938G>A	c.(937-939)GGG>GAG	p.G313E	PCBP3_uc002zhp.1_Missense_Mutation_p.G293E|PCBP3_uc002zhs.1_Missense_Mutation_p.G287E|PCBP3_uc002zhr.1_Missense_Mutation_p.G312E|PCBP3_uc002zht.1_Missense_Mutation_p.G303E	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	313	KH 3.				mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		GGACGCCAAGGGACCAAAATC	0.537													12	46					0	0	0.001855	0	0
PCBP3	54039	broad.mit.edu	37	21	47359986	47359986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:47359986G>A	uc002zhq.1	+	13	1077	c.952G>A	c.(952-954)GAA>AAA	p.E318K	PCBP3_uc002zhp.1_Missense_Mutation_p.E298K|PCBP3_uc002zhs.1_Missense_Mutation_p.E292K|PCBP3_uc002zhr.1_Missense_Mutation_p.E317K|PCBP3_uc002zht.1_Missense_Mutation_p.E308K	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	318	KH 3.				mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		CAAAATCAATGAAATTCGACA	0.527													11	42					0	0	0.001368	0	0
COL6A1	1291	broad.mit.edu	37	21	47423519	47423519	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:47423519C>T	uc002zhu.1	+	35	2781	c.2679C>T	c.(2677-2679)TTC>TTT	p.F893F	COL6A1_uc010gqd.1_Silent_p.F224F|COL6A1_uc002zhv.1_Silent_p.F224F|COL6A1_uc002zhw.1_5'UTR	NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	893	C-terminal globular domain.|VWFA 3.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	CGCTGCAGTTCCTGCAGAACT	0.672													10	19					0	0	0.000673	0	0
MCM3AP	8888	broad.mit.edu	37	21	47695184	47695184	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:47695184C>T	uc002zir.1	-	6	1950	c.1914G>A	c.(1912-1914)CTG>CTA	p.L638L		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	638					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					GACACATATCCAGGCAGGTGC	0.527													10	24					0	0	0.000443	0	0
C21orf57	54059	broad.mit.edu	37	21	47711284	47711284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr21:47711284C>T	uc002ziv.2	+	3	676	c.247C>T	c.(247-249)CCA>TCA	p.P83S	C21orf57_uc002zit.1_Missense_Mutation_p.P83S|C21orf57_uc002ziu.1_Missense_Mutation_p.P83S|C21orf57_uc002ziw.2_Missense_Mutation_p.P38S|C21orf57_uc002zix.2_Missense_Mutation_p.P83S|C21orf57_uc010gqh.2_Intron|C21orf57_uc002ziy.2_Intron|uc010gqi.1_5'Flank	NM_058181	NP_478061	P58557	YBEY_HUMAN	hypothetical protein LOC54059 isoform 1	83							metal ion binding|metalloendopeptidase activity				0	Breast(49;0.112)			Colorectal(79;0.236)		GCCTGATTTTCCAGATGACTA	0.413													10	37					0	0	0.000978	0	0
CDC45	8318	broad.mit.edu	37	22	19504097	19504097	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:19504097C>T	uc002zpr.2	+	16	1564	c.1488C>T	c.(1486-1488)CCC>CCT	p.P496P	CDC45_uc011aha.1_Silent_p.P528P|CDC45_uc002zps.2_Silent_p.P496P|CDC45_uc002zpt.2_Silent_p.P450P	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	496					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						TGGCTGCCCCCCTGAGCATGG	0.627													27	25					0	0	0.001271	0	0
RIMBP3	85376	broad.mit.edu	37	22	20458068	20458068	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:20458068G>A	uc002zsd.3	-	1	3719	c.3234C>T	c.(3232-3234)TTC>TTT	p.F1078F		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			AGAGTGTGTCGAAGGTGACGG	0.662													5	30					0	0	0.000602	0	0
MED15	51586	broad.mit.edu	37	22	20937674	20937674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:20937674C>T	uc002zsp.2	+	13	1810	c.1730C>T	c.(1729-1731)TCG>TTG	p.S577L	MED15_uc002zsq.2_Missense_Mutation_p.S537L|MED15_uc010gso.2_Missense_Mutation_p.S520L|MED15_uc002zsr.2_Missense_Mutation_p.S511L|MED15_uc011ahs.1_Missense_Mutation_p.S511L|MED15_uc002zss.2_Missense_Mutation_p.S456L|MED15_uc011ahu.1_Missense_Mutation_p.S287L|MED15_uc002zst.2_Missense_Mutation_p.S193L|MED15_uc002zsu.2_Missense_Mutation_p.S182L	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	577					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			ACAGACCCCTCGAAGCGGTGA	0.537													25	90					0	0	0.004656	0	0
PI4KA	5297	broad.mit.edu	37	22	21096518	21096518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:21096518G>A	uc002zsz.3	-	32	3796	c.3565C>T	c.(3565-3567)CCG>TCG	p.P1189S		NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1189					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			GGTCCTACCGGCACTTCCACT	0.512											OREG0026324	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	66	108					0	0	0.003610	0	0
SLC7A4	6545	broad.mit.edu	37	22	21386021	21386021	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:21386021G>A	uc002zud.2	-	2	149	c.81C>T	c.(79-81)TCC>TCT	p.S27S	SLC7A4_uc002zue.2_Silent_p.S27S	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	27					cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	TCTCCATGGTGGAGTCCTCCA	0.657													15	27					0	0	0.006122	0	0
RIMBP3C	150221	broad.mit.edu	37	22	21741381	21741381	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:21741381C>T	uc002zuq.3	+	1	3342	c.3234C>T	c.(3232-3234)TTC>TTT	p.F1078F		NM_001128635	NP_001122107			RIMS binding protein 3B												0						CCGTCACCTTCGACACACTCT	0.657													6	14					0	0	0.001168	0	0
GNAZ	2781	broad.mit.edu	37	22	23438263	23438263	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:23438263C>T	uc002zwu.1	+	2	918	c.381C>T	c.(379-381)GTC>GTT	p.V127V	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	127						endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		TGCTGGGTGTCATGCGACGGC	0.667													26	43					0	0	0.004656	0	0
ZDHHC8P1	150244	broad.mit.edu	37	22	23742356	23742356	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:23742356G>A	uc002zxa.3	-	3		c.780C>T			ZDHHC8P1_uc002zxb.3_RNA|ZDHHC8P1_uc002zwz.3_RNA	NR_003950				Homo sapiens cDNA FLJ31568 fis, clone NT2RI2001595.												0						TGGGTCGCCCGTTGCCCCAGG	0.692													8	13					0	0	0.000978	0	0
CABIN1	23523	broad.mit.edu	37	22	24563146	24563146	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:24563146C>T	uc002zzi.1	+	32	5674	c.5547C>T	c.(5545-5547)CTC>CTT	p.L1849L	CABIN1_uc002zzj.1_Silent_p.L1770L|CABIN1_uc002zzl.1_Silent_p.L1849L|CABIN1_uc002zzm.1_Silent_p.L274L	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1849					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AGAGGAAGCTCCTGGAGGACA	0.587													12	20					0	0	0.001855	0	0
GGT5	2687	broad.mit.edu	37	22	24622626	24622626	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:24622626C>T	uc002zzo.3	-	7	1428	c.1011G>A	c.(1009-1011)GGG>GGA	p.G337G	GGT5_uc002zzp.3_Silent_p.G337G|GGT5_uc002zzr.3_Silent_p.G305G|GGT5_uc002zzq.3_Silent_p.G305G|GGT5_uc011ajm.1_Silent_p.G260G|GGT5_uc011ajn.1_RNA	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	337	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						TTCGAGGGTCCCCCAGCCTCC	0.607													19	36					0	0	0.001216	0	0
SGSM1	129049	broad.mit.edu	37	22	25255689	25255689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:25255689G>A	uc003abg.2	+	9	965	c.808G>A	c.(808-810)GAC>AAC	p.D270N	SGSM1_uc003abh.2_Missense_Mutation_p.D270N|SGSM1_uc010guu.1_Missense_Mutation_p.D270N|SGSM1_uc003abj.2_Missense_Mutation_p.D270N|SGSM1_uc003abi.1_Missense_Mutation_p.D245N|SGSM1_uc003abf.2_Missense_Mutation_p.D270N	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	270						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GCAGAGGGACGACATGGAGGC	0.562													16	27					0	0	0.004990	0	0
SGSM1	129049	broad.mit.edu	37	22	25289463	25289463	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:25289463C>T	uc003abg.2	+	18	2158	c.2001C>T	c.(1999-2001)ATC>ATT	p.I667I	SGSM1_uc003abh.2_Intron|SGSM1_uc010guu.1_Silent_p.I612I|SGSM1_uc003abj.2_Intron|SGSM1_uc003abi.1_Silent_p.I587I	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	667	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GCGAGGCGATCGTGCGGCAGA	0.642													23	26					0	0	0.003954	0	0
MYO18B	84700	broad.mit.edu	37	22	26264314	26264314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:26264314G>A	uc003abz.1	+	22	4163	c.3913G>A	c.(3913-3915)GAT>AAT	p.D1305N	MYO18B_uc003aca.1_Missense_Mutation_p.D1186N|MYO18B_uc010guy.1_Missense_Mutation_p.D1187N|MYO18B_uc010guz.1_Missense_Mutation_p.D1186N|MYO18B_uc011aka.1_Missense_Mutation_p.D459N|MYO18B_uc011akb.1_Missense_Mutation_p.D818N	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1305	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGAGACCCTGGATCTGGAAAA	0.527													6	11					0	0	0.004482	0	0
ASPHD2	57168	broad.mit.edu	37	22	26829737	26829737	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:26829737C>T	uc003acg.2	+	2	553	c.156C>T	c.(154-156)TCC>TCT	p.S52S		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	52	Cytoplasmic (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						GCATCCAGTCCGTGCGGGACT	0.657													27	59					0	0	0.004656	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30688370	30688370	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:30688370G>A	uc011akt.1	-	11	1545	c.1521C>T	c.(1519-1521)TAC>TAT	p.Y507Y	GATSL3_uc003ahc.2_5'Flank|GATSL3_uc003ahe.2_5'Flank|GATSL3_uc003ahd.2_5'Flank|GATSL3_uc003ahf.2_Intron|GATSL3_uc003ahg.2_Intron|GATSL3_uc003ahh.2_Intron|GATSL3_uc010gvq.2_Intron|GATSL3_uc003ahi.2_Intron|GATSL3_uc010gvr.2_5'Flank|GATSL3_uc010gvs.2_5'Flank|TBC1D10A_uc003ahj.3_Silent_p.Y419Y|TBC1D10A_uc010gvu.2_Silent_p.Y514Y|TBC1D10A_uc003ahk.3_Silent_p.Y507Y	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	507	Binding to the PDZ domain of EBP50.					intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						AGGGTTACAAGTAGGTGTCCT	0.597													74	156					0	0	0.003610	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30688391	30688391	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:30688391G>A	uc011akt.1	-	11	1524	c.1500C>T	c.(1498-1500)TCC>TCT	p.S500S	GATSL3_uc003ahc.2_5'Flank|GATSL3_uc003ahe.2_5'Flank|GATSL3_uc003ahd.2_5'Flank|GATSL3_uc003ahf.2_Intron|GATSL3_uc003ahg.2_Intron|GATSL3_uc003ahh.2_Intron|GATSL3_uc010gvq.2_Intron|GATSL3_uc003ahi.2_Intron|GATSL3_uc010gvr.2_5'Flank|GATSL3_uc010gvs.2_5'Flank|TBC1D10A_uc003ahj.3_Silent_p.S412S|TBC1D10A_uc010gvu.2_Silent_p.S507S|TBC1D10A_uc003ahk.3_Silent_p.S500S	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	500						intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						CACTCTCTTGGGACGTCAAGC	0.587													74	149					0	0	0.003610	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30950957	30950957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:30950957C>T	uc003aig.1	-	4	1395	c.1255G>A	c.(1255-1257)GAT>AAT	p.D419N	GAL3ST1_uc003aih.1_Missense_Mutation_p.D419N|GAL3ST1_uc003aii.1_Missense_Mutation_p.D419N|GAL3ST1_uc010gvz.1_Missense_Mutation_p.D419N	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	419	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						CGCAGGAAATCGCGAATGAAC	0.682													13	25					0	0	0.002450	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30950960	30950960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:30950960G>A	uc003aig.1	-	4	1392	c.1252C>T	c.(1252-1254)CGC>TGC	p.R418C	GAL3ST1_uc003aih.1_Missense_Mutation_p.R418C|GAL3ST1_uc003aii.1_Missense_Mutation_p.R418C|GAL3ST1_uc010gvz.1_Missense_Mutation_p.R418C	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	418	Lumenal (Potential).			R -> L (in Ref. 1; AA sequence).	protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						AGGAAATCGCGAATGAACTTC	0.687													14	25					0	0	0.003163	0	0
PATZ1	23598	broad.mit.edu	37	22	31740408	31740408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:31740408C>T	uc003akq.2	-	1	1842	c.1181G>A	c.(1180-1182)AGA>AAA	p.R394K	PATZ1_uc003akp.2_Missense_Mutation_p.R394K|PATZ1_uc003akr.2_Missense_Mutation_p.R394K|PATZ1_uc003aks.2_Missense_Mutation_p.R394K|uc003akt.2_5'Flank	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	394	C2H2-type 3.			R -> K (in Ref. 1; AAF32518).	negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						GCGGTCTTTTCTCTTGAACCG	0.557													33	59					0	0	0.002836	0	0
CACNG2	10369	broad.mit.edu	37	22	36960624	36960624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:36960624G>A	uc003aps.1	-	4	1028	c.746C>T	c.(745-747)TCC>TTC	p.S249F		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	249					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						GGCGTCCCTGGAGTGTGAGGG	0.682													39	70					0	0	0.002852	0	0
IFT27	11020	broad.mit.edu	37	22	37159018	37159018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:37159018C>T	uc003apv.1	-	6	755	c.392G>A	c.(391-393)CGA>CAA	p.R131Q	IFT27_uc003apu.1_Missense_Mutation_p.R130Q|IFT27_uc003apw.1_3'UTR	NM_006860	NP_006851	Q9BW83	IFT27_HUMAN	RAB, member of RAS oncogene family-like 4	131					small GTPase mediated signal transduction	intraflagellar transport particle B|microtubule-based flagellum	GTP binding				0						GTCCACTGCTCGTCTGCCGGC	0.552													18	35					0	0	0.006122	0	0
CYTH4	27128	broad.mit.edu	37	22	37707063	37707063	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:37707063C>T	uc003arf.2	+	10	959	c.843C>T	c.(841-843)TTC>TTT	p.F281F	CYTH4_uc011amw.1_Silent_p.F224F|CYTH4_uc010gxe.2_Intron	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	281	PH.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GGCGCTGGTTCATCCTGACCG	0.627													41	80					0	0	0.002522	0	0
TRIOBP	11078	broad.mit.edu	37	22	38153678	38153678	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:38153678C>T	uc003atr.2	+	16	6017	c.5746C>T	c.(5746-5748)CTG>TTG	p.L1916L	TRIOBP_uc003atu.2_Silent_p.L1744L|TRIOBP_uc003atv.2_Silent_p.L203L|TRIOBP_uc003atw.2_Silent_p.L203L|TRIOBP_uc003atx.1_5'UTR|TRIOBP_uc010gxh.2_5'UTR	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1916					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAAGGGCCCCCTGAAGGCAGG	0.672													5	1					0	0	0.001168	0	0
DDX17	10521	broad.mit.edu	37	22	38889753	38889753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:38889753C>T	uc003avy.3	-	10	1452	c.1349G>A	c.(1348-1350)GGA>GAA	p.G450E	DDX17_uc003avx.3_Missense_Mutation_p.G450E|DDX17_uc011anu.1_Missense_Mutation_p.G363E	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	371	Helicase C-terminal.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					ACTCTTGTCTCCATGGATACA	0.368													24	42					0	0	0.003954	0	0
CBY1	25776	broad.mit.edu	37	22	39064087	39064088	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:39064087_39064088CC>TT	uc003awb.2	+	3	304_305	c.28_29CC>TT	c.(28-30)CCG>TTG	p.P10L	CBY1_uc011any.1_Missense_Mutation_p.P10L|CBY1_uc003awc.2_Missense_Mutation_p.P10L	NM_001002880	NP_001002880	Q9Y3M2	CBY1_HUMAN	PKD2 interactor, golgi and endoplasmic reticulum	10					cardiac muscle cell differentiation|fat cell differentiation|negative regulation of transcription, DNA-dependent|protein localization	nuclear speck|trans-Golgi network	beta-catenin binding|identical protein binding			ovary(1)	1	Melanoma(58;0.04)					TACGTTCAGTCCGAAGAAGACA	0.54													12	35					0	0	0.004672	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966960	39966960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:39966960C>T	uc003ayc.2	+	1	203	c.203C>T	c.(202-204)CCC>CTC	p.P68L	CACNA1I_uc003ayd.2_Missense_Mutation_p.P68L	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	68	Cytoplasmic (Potential).|I.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACCACCAGCCCCCGGAACTGG	0.642													36	62					0	0	0.001287	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41744140	41744140	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:41744140C>T	uc003azw.2	+	15	1951	c.1735C>T	c.(1735-1737)CTG>TTG	p.L579L	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	595					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CTGCTCCAACCTGGCTGCCAA	0.602													37	80					0	0	0.001287	0	0
ACO2	50	broad.mit.edu	37	22	41913586	41913586	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:41913586C>T	uc003bac.2	+	7	913	c.891C>T	c.(889-891)TTC>TTT	p.F297F	ACO2_uc003bad.2_Silent_p.F322F	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	297					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						CTTCCGTGTTCCCTTACAACC	0.622											OREG0026588	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	21					0	0	0.002450	0	0
POLDIP3	84271	broad.mit.edu	37	22	42988045	42988046	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:42988045_42988046GG>AA	uc003bcu.2	-	7	1035_1036	c.936_937CC>TT	c.(934-939)GTCCAT>GTTTAT	p.H313Y	POLDIP3_uc011app.1_Missense_Mutation_p.H234Y|POLDIP3_uc003bcv.2_Missense_Mutation_p.H284Y|POLDIP3_uc011apq.1_Missense_Mutation_p.H330Y|POLDIP3_uc010gza.2_RNA|POLDIP3_uc011apr.1_RNA|POLDIP3_uc010gzb.1_Intron	NM_032311	NP_115687	Q9BY77	PDIP3_HUMAN	DNA polymerase delta interacting protein 3	313	RRM.				positive regulation of translation	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding				0						ACCCCAGGATGGACCAGTCGAG	0.54													34	92					0	0	0.004672	0	0
EFCAB6	64800	broad.mit.edu	37	22	43972186	43972186	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:43972186G>A	uc003bdy.1	-	26	3626	c.3411C>T	c.(3409-3411)TTC>TTT	p.F1137F	EFCAB6_uc003bdz.1_Silent_p.F985F|EFCAB6_uc010gzi.1_Silent_p.F985F|EFCAB6_uc010gzj.1_Silent_p.F363F	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1137					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CCTCCTCAAGGAAACAGCTAA	0.313													27	51					0	0	0.001512	0	0
PKDREJ	10343	broad.mit.edu	37	22	46655266	46655266	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:46655266A>T	uc003bhh.2	-	1	3954	c.3954T>A	c.(3952-3954)AAT>AAA	p.N1318K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1318	Cytoplasmic (Potential).|PLAT.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TGCTAAACAGATTTTCCACTT	0.458													37	97					0	0	0.001287	0	0
MLC1	23209	broad.mit.edu	37	22	50500043	50500043	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:50500043C>T	uc003bjg.1	-	12	1376	c.1103G>A	c.(1102-1104)TGG>TAG	p.W368*	MLC1_uc011arl.1_Nonsense_Mutation_p.W316*|MLC1_uc003bjh.1_Nonsense_Mutation_p.W368*|MLC1_uc011arm.1_Nonsense_Mutation_p.W338*|MLC1_uc011arn.1_Nonsense_Mutation_p.W289*|MLC1_uc011aro.1_Nonsense_Mutation_p.W334*	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	368						basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		GACGGCTCTCCAGGCTTTCTC	0.632													17	51					0	0	0.001882	0	0
PLXNB2	23654	broad.mit.edu	37	22	50724285	50724285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:50724285G>A	uc003bkv.3	-	11	2138	c.2032C>T	c.(2032-2034)CCC>TCC	p.P678S		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	678	Extracellular (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TGGTTCATGGGGATCACCAGG	0.647													29	33					0	0	0.001786	0	0
SBF1	6305	broad.mit.edu	37	22	50901026	50901026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:50901026G>A	uc003blh.2	-	18	2284	c.2089C>T	c.(2089-2091)CTC>TTC	p.L697F	SBF1_uc011arx.1_Missense_Mutation_p.L361F|SBF1_uc003bli.2_Missense_Mutation_p.L698F	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	697					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		TCCAGGTAGAGGGCCCGGATG	0.562													10	7					0	0	0.000673	0	0
MIOX	55586	broad.mit.edu	37	22	50927489	50927489	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:50927489C>T	uc003bll.1	+	6	543	c.429C>T	c.(427-429)ACC>ACT	p.T143T	MIOX_uc003blm.1_Silent_p.T143T|MIOX_uc003bln.1_Missense_Mutation_p.P154L	NM_017584	NP_060054	Q9UGB7	MIOX_HUMAN	myo-inositol oxygenase	143					inositol catabolic process	cytoplasm|inclusion body	aldo-keto reductase (NADP) activity|ferric iron binding|inositol oxygenase activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TCGGCGACACCTTCCCCGTCG	0.657													10	11					0	0	0.001368	0	0
CHKB	1120	broad.mit.edu	37	22	51020181	51020181	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr22:51020181G>A	uc003bms.2	-	3	662	c.444C>T	c.(442-444)ATC>ATT	p.I148I	CHKB-CPT1B_uc003bmp.2_5'Flank|CHKB-CPT1B_uc003bmt.1_Intron|CHKB-CPT1B_uc003bmu.2_Silent_p.I27I|CHKB_uc003bmv.2_Silent_p.I148I|LOC100144603_uc003bmw.3_5'Flank	NM_005198	NP_005189	Q9Y259	CHKB_HUMAN	choline kinase beta	148	ATP.				phosphatidylethanolamine biosynthetic process		ATP binding|choline kinase activity|ethanolamine kinase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;4.04e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.79e-74)|Epithelial(4;6.17e-70)|GBM - Glioblastoma multiforme(4;5.68e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.205)	Choline(DB00122)	CCCGTACTGGGATGTACTGTT	0.632													25	57					0	0	0.003330	0	0
CHL1	10752	broad.mit.edu	37	3	423911	423911	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:423911G>A	uc003bou.2	+	16	2149	c.1878G>A	c.(1876-1878)AGG>AGA	p.R626R	CHL1_uc003bot.2_Silent_p.R642R|CHL1_uc003bow.1_Silent_p.R626R|CHL1_uc011asi.1_Silent_p.R642R|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	626	Fibronectin type-III 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		GACAGAACAGGAGTGTTCGGC	0.408													14	32					0	0	0.004990	0	0
CNTN4	152330	broad.mit.edu	37	3	2967439	2967439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:2967439G>A	uc003bpc.2	+	12	1555	c.1334G>A	c.(1333-1335)AGG>AAG	p.R445K	CNTN4_uc003bpb.1_Missense_Mutation_p.R117K|CNTN4_uc003bpd.1_Missense_Mutation_p.R445K|CNTN4_uc003bpe.2_Missense_Mutation_p.R117K|CNTN4_uc003bpf.2_Missense_Mutation_p.R117K	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	445	Ig-like C2-type 5.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AAGAAAGGAAGGGATATATTA	0.348													48	111					0	0	0.003610	0	0
ITPR1	3708	broad.mit.edu	37	3	4842138	4842138	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:4842138C>T	uc003bqa.2	+	51	7165	c.6817C>T	c.(6817-6819)CTG>TTG	p.L2273L	ITPR1_uc010hca.1_Silent_p.L2258L|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.L1243L|ITPR1_uc010hcc.1_Silent_p.L41L|ITPR1_uc011asv.1_5'UTR	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2321	Helical; (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GTCGGGACTCCTGTGGACAGC	0.537													27	51					0	0	0.003271	0	0
GRM7	2917	broad.mit.edu	37	3	7721852	7721852	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:7721852C>T	uc003bqm.2	+	9	2842	c.2568C>T	c.(2566-2568)GTC>GTT	p.V856V	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.V856V|GRM7_uc003bql.2_Silent_p.V856V|GRM7_uc003bqn.1_Silent_p.V439V	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	856	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AACTCAATGTCCAGAAACGGA	0.512													20	35					0	0	0.002299	0	0
JAGN1	84522	broad.mit.edu	37	3	9934917	9934917	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:9934917C>T	uc003btt.3	+	2	544	c.408C>T	c.(406-408)TAC>TAT	p.Y136Y	CIDEC_uc003bto.2_Intron	NM_032492	NP_115881	Q8N5M9	JAGN1_HUMAN	jagunal homolog 1	136	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(1)	1	Medulloblastoma(99;0.227)					GCAAGGCCTACCGTTTCCTCT	0.522													39	68					0	0	0.002852	0	0
ATP2B2	491	broad.mit.edu	37	3	10430058	10430058	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:10430058C>T	uc003bvt.2	-	6	1249	c.810G>A	c.(808-810)CGG>CGA	p.R270R	ATP2B2_uc003bvv.2_Silent_p.R270R|ATP2B2_uc003bvw.2_Silent_p.R270R|ATP2B2_uc010hdp.2_Silent_p.R270R|ATP2B2_uc010hdo.2_Silent_p.R6R	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	270	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TCACCAACATCCGTCCTGAGC	0.507													38	89					0	0	0.001951	0	0
SLC6A11	6538	broad.mit.edu	37	3	10970918	10970918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:10970918G>A	uc003bvz.2	+	10	1298	c.1264G>A	c.(1264-1266)GTG>ATG	p.V422M		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	422					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		GGTGACCGCCGTGGTGGACAT	0.557													71	136					0	0	0.003610	0	0
ATG7	10533	broad.mit.edu	37	3	11374466	11374466	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:11374466T>C	uc003bwc.2	+	9	905	c.788T>C	c.(787-789)GTT>GCT	p.V263A	ATG7_uc003bwd.2_Missense_Mutation_p.V263A|ATG7_uc011aum.1_Missense_Mutation_p.V224A	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	263					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						TTCCAGTCTGTTGAAGTTGTT	0.423													7	8					0	0	0.001984	0	0
NUP210	23225	broad.mit.edu	37	3	13421065	13421065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:13421065C>T	uc003bxv.1	-	7	1057	c.974G>A	c.(973-975)AGG>AAG	p.R325K	NUP210_uc003bxx.2_5'Flank	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	325	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					AAGGATATTCCTGTGGCCAAG	0.562													30	91					0	0	0.003755	0	0
FBLN2	2199	broad.mit.edu	37	3	13659748	13659748	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:13659748C>T	uc011avb.1	+	6	2027	c.1902C>T	c.(1900-1902)GGC>GGT	p.G634G	FBLN2_uc011auz.1_Silent_p.G660G|FBLN2_uc011ava.1_Silent_p.G634G|FBLN2_uc011avc.1_Silent_p.G634G	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	634	EGF-like 1; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			GCTTTCCTGGCTTCTCACTGC	0.622													21	50					0	0	0.001882	0	0
FBLN2	2199	broad.mit.edu	37	3	13659764	13659764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:13659764G>A	uc011avb.1	+	6	2043	c.1918G>A	c.(1918-1920)GAT>AAT	p.D640N	FBLN2_uc011auz.1_Missense_Mutation_p.D666N|FBLN2_uc011ava.1_Missense_Mutation_p.D640N|FBLN2_uc011avc.1_Missense_Mutation_p.D640N	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	640	EGF-like 1; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			ACTGCAGGACGATGGCCGCAC	0.612													15	38					0	0	0.003163	0	0
WNT7A	7476	broad.mit.edu	37	3	13896123	13896123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:13896123C>T	uc003bye.1	-	3	781	c.476G>A	c.(475-477)GGC>GAC	p.G159D		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	159					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						GAAGCCGATGCCGTAGCGGAT	0.602													49	99					0	0	0.003610	0	0
C3orf20	84077	broad.mit.edu	37	3	14801436	14801436	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:14801436G>A	uc003byy.2	+	14	2687	c.2283G>A	c.(2281-2283)CTG>CTA	p.L761L	C3orf20_uc003byz.2_Silent_p.L639L|C3orf20_uc003bza.2_Silent_p.L639L|C3orf20_uc003bzb.1_Silent_p.L262L|C3orf20_uc011avj.1_Silent_p.L88L	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	761						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						AGTATGACCTGGACAGCCCCC	0.562													13	62					0	0	0.002450	0	0
C3orf20	84077	broad.mit.edu	37	3	14814316	14814316	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:14814316G>A	uc003byy.2	+	17	3053	c.2649G>A	c.(2647-2649)GTG>GTA	p.V883V	C3orf20_uc003byz.2_Silent_p.V761V|C3orf20_uc003bza.2_Silent_p.V761V|C3orf20_uc003bzb.1_3'UTR|C3orf20_uc011avj.1_Silent_p.V210V	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	883						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						AGCCTGAAGTGGAGCTACATC	0.587													16	22					0	0	0.004990	0	0
OSBPL10	114884	broad.mit.edu	37	3	31712392	31712392	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:31712392A>T	uc003cev.2	-	10	2191	c.1810T>A	c.(1810-1812)TGG>AGG	p.W604R	OSBPL10_uc003ceu.1_Missense_Mutation_p.W361R|OSBPL10_uc011axf.1_Missense_Mutation_p.W540R	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	604					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		AGCTCCACCCACGGGATGGTG	0.562													29	52					0	0	0.002836	0	0
TMPPE	643853	broad.mit.edu	37	3	33134522	33134522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:33134522G>A	uc003cfk.2	-	2	1357	c.1166C>T	c.(1165-1167)TCT>TTT	p.S389F	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Missense_Mutation_p.S252F	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	389						integral to membrane	metal ion binding				0						TGTGTGCCCAGAAAGGATCAG	0.562													5	99					0	0	0.001168	0	0
TRANK1	9881	broad.mit.edu	37	3	36872497	36872497	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:36872497G>A	uc003cgj.2	-	12	7097	c.6795C>T	c.(6793-6795)ATC>ATT	p.I2265I		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2815					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CACTTTGCTCGATGTCCTGCA	0.542													72	162					0	0	0.003610	0	0
SLC22A14	9389	broad.mit.edu	37	3	38357110	38357110	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:38357110G>A	uc010hhc.1	+	9	1482	c.1440G>A	c.(1438-1440)ACG>ACA	p.T480T	SLC22A14_uc003cib.2_Silent_p.T480T|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	480	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		AATCCATGACGATCTTGGTGC	0.592													51	74					0	0	0.003610	0	0
SCN10A	6336	broad.mit.edu	37	3	38743371	38743371	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:38743371C>T	uc003ciq.2	-	26	4616	c.4616G>A	c.(4615-4617)TGG>TAG	p.W1539*		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1539	IV.|Helical; Name=S3 of repeat IV; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AAACACATTCCAGCCATTTGT	0.498													13	28					0	0	0.001855	0	0
SCN11A	11280	broad.mit.edu	37	3	38946740	38946740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:38946740G>A	uc011ays.1	-	11	1745	c.1546C>T	c.(1546-1548)CCT>TCT	p.P516S		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	516					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTTTGGAGAGGATCTCCATGC	0.498													46	93					0	0	0.002852	0	0
SCN11A	11280	broad.mit.edu	37	3	38988316	38988316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:38988316G>A	uc011ays.1	-	2	549	c.350C>T	c.(349-351)TCA>TTA	p.S117L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	117					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACTTCTGATTGAATTGAAAGG	0.403													37	78					0	0	0.004878	0	0
WDR48	57599	broad.mit.edu	37	3	39133152	39133152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:39133152C>T	uc003cit.2	+	17	1715	c.1705C>T	c.(1705-1707)CTC>TTC	p.L569F	WDR48_uc011ayt.1_Missense_Mutation_p.L560F|WDR48_uc011ayu.1_Missense_Mutation_p.L487F|WDR48_uc011ayv.1_Missense_Mutation_p.L294F|WDR48_uc003ciu.2_RNA	NM_020839	NP_065890	Q8TAF3	WDR48_HUMAN	WD repeat domain 48	569					interspecies interaction between organisms|protein deubiquitination	lysosome|nucleus	protein binding			ovary(1)|breast(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		TCCTTTCTACCTCCAACCTCA	0.279													9	42					0	0	0.000443	0	0
WDR48	57599	broad.mit.edu	37	3	39133154	39133154	+	Silent	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:39133154C>A	uc003cit.2	+	17	1717	c.1707C>A	c.(1705-1707)CTC>CTA	p.L569L	WDR48_uc011ayt.1_Silent_p.L560L|WDR48_uc011ayu.1_Silent_p.L487L|WDR48_uc011ayv.1_Silent_p.L294L|WDR48_uc003ciu.2_RNA	NM_020839	NP_065890	Q8TAF3	WDR48_HUMAN	WD repeat domain 48	569					interspecies interaction between organisms|protein deubiquitination	lysosome|nucleus	protein binding			ovary(1)|breast(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		CTTTCTACCTCCAACCTCATG	0.284													9	46					7.48243e-07	1.4618e-06	0.000443	1	0
XIRP1	165904	broad.mit.edu	37	3	39227129	39227129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:39227129G>A	uc003cjk.1	-	2	4029	c.3808C>T	c.(3808-3810)CCA>TCA	p.P1270S	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_5'UTR	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1270	Pro-rich.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GCTCCAGCTGGAAAGTCAGGT	0.632													36	45					0	0	0.003271	0	0
RPL14	9045	broad.mit.edu	37	3	40503610	40503610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:40503610C>T	uc003ckg.2	+	6	586	c.535C>T	c.(535-537)CCT>TCT	p.P179S	RPL14_uc003ckh.2_Missense_Mutation_p.P179S|RPL14_uc003cki.2_Missense_Mutation_p.P130S	NM_003973	NP_003964	P50914	RL14_HUMAN	ribosomal protein L14	179	1-2.|4 X 5 AA tandem repeats of Q-K-A-[PAS]-X.				endocrine pancreas development|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCAGAAGGTTCCTGCCCAGAA	0.448													5	15					0	0	0.000602	0	0
TRAK1	22906	broad.mit.edu	37	3	42264721	42264721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:42264721C>T	uc003cky.2	+	16	2570	c.2354C>T	c.(2353-2355)TCG>TTG	p.S785L	TRAK1_uc011azi.1_Missense_Mutation_p.S764L	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	785					endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						CCGCCGAACTCGCCTATGCAG	0.632													21	29					0	0	0.002780	0	0
HHATL	57467	broad.mit.edu	37	3	42740220	42740221	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:42740220_42740221CC>TT	uc003clw.2	-	6	609_610	c.462_463GG>AA	c.(460-465)ATGGAC>ATAAAC	p.154_155MD>IN	HHATL_uc003clx.2_Missense_Mutation_p.154_155MD>IN	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	154_155					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		ATTAGGGGGTCCATCTTGAAGG	0.574													47	105					0	0	0.004672	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916696	42916696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:42916696C>T	uc003cmh.2	-	1	938	c.613G>A	c.(613-615)GAG>AAG	p.E205K	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.E205K	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	205					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		TTGCGGAACTCCATGAATAAC	0.527													24	50					0	0	0.003954	0	0
SNRK	54861	broad.mit.edu	37	3	43381846	43381846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:43381846C>T	uc003cms.3	+	5	1131	c.799C>T	c.(799-801)CCT>TCT	p.P267S	SNRK_uc003cmt.3_Missense_Mutation_p.P267S|SNRK_uc010hik.2_Missense_Mutation_p.P267S|SNRK_uc011azr.1_Missense_Mutation_p.P61S	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	267	Protein kinase.				myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		TGAAAATCATCCTTGGCTTCA	0.438													73	131					0	0	0.003610	0	0
SLC6A20	54716	broad.mit.edu	37	3	45807204	45807204	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:45807204G>A	uc011bai.1	-	8	1252	c.1128C>T	c.(1126-1128)ATC>ATT	p.I376I	SLC6A20_uc003cow.2_Silent_p.I26I|SLC6A20_uc011baj.1_Silent_p.I339I	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	376	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		CTGTGTAGACGATGAATGCCA	0.532													20	52					0	0	0.002780	0	0
CCR1	1230	broad.mit.edu	37	3	46245260	46245260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:46245260G>A	uc003cph.1	-	2	616	c.545C>T	c.(544-546)ACC>ATC	p.T182I	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	182	Extracellular (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		AAGGCTGCAGGTGTGGTGAGT	0.498													27	70					0	0	0.001271	0	0
LTF	4057	broad.mit.edu	37	3	46496877	46496877	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:46496877G>A	uc003cpq.2	-	5	593	c.555C>T	c.(553-555)TTC>TTT	p.F185F	LTF_uc003fzr.2_Silent_p.F141F|LTF_uc010hjh.2_Silent_p.F185F|LTF_uc003cpr.2_Silent_p.F172F	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	185	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	ACAGGTTGGGGAACTGTCCTT	0.552													22	35					0	0	0.002299	0	0
SMARCC1	6599	broad.mit.edu	37	3	47727614	47727614	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:47727614A>C	uc003crq.2	-	14	1428	c.1310T>G	c.(1309-1311)CTT>CGT	p.L437R	SMARCC1_uc011bbd.1_Missense_Mutation_p.L328R	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	437					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		ATCTTCCCCAAGGTCAACTGA	0.388													19	48					0	0	0.001216	0	0
PFKFB4	5210	broad.mit.edu	37	3	48573728	48573728	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:48573728C>T	uc003ctv.2	-	8	818	c.801G>A	c.(799-801)CGG>CGA	p.R267R	PFKFB4_uc003ctw.2_Silent_p.R76R|PFKFB4_uc010hkc.2_Silent_p.R267R|PFKFB4_uc003ctx.2_Silent_p.R224R|PFKFB4_uc010hkb.2_Silent_p.R267R|PFKFB4_uc011bbm.1_Silent_p.R256R|PFKFB4_uc011bbn.1_RNA	NM_004567	NP_004558	Q16877	F264_HUMAN	6-phosphofructo-2-kinase/fructose-2,	267	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0003)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		CCCCGCCAATCCGGCCCTTGA	0.642													30	60					0	0	0.002096	0	0
COL7A1	1294	broad.mit.edu	37	3	48616816	48616816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:48616816G>A	uc003ctz.2	-	60	5294	c.5293C>T	c.(5293-5295)CCA>TCA	p.P1765S	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1765	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCTCCTGCTGGGCCTCGGACA	0.567													21	50					0	0	0.002299	0	0
QARS	5859	broad.mit.edu	37	3	49136085	49136085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:49136085G>A	uc003cvx.2	-	20	1909	c.1904C>T	c.(1903-1905)CCT>CTT	p.P635L	QARS_uc011bcc.1_Missense_Mutation_p.P88L|QARS_uc011bcd.1_Missense_Mutation_p.P490L|QARS_uc003cvy.2_Missense_Mutation_p.P490L|QARS_uc011bce.1_Missense_Mutation_p.P624L	NM_005051	NP_005042	P47897	SYQ_HUMAN	glutaminyl-tRNA synthetase	635					glutaminyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|glutamine-tRNA ligase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)	L-Glutamine(DB00130)	CAGGCCCACAGGCTGGCCCCA	0.582													11	23					0	0	0.001855	0	0
SLC38A3	10991	broad.mit.edu	37	3	50256359	50256359	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:50256359C>T	uc003cyn.3	+	14	1426	c.1285C>T	c.(1285-1287)CTG>TTG	p.L429L		NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	429					cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	CCCCAACATCCTGGGCATCTT	0.552													17	30					0	0	0.001216	0	0
DOCK3	1795	broad.mit.edu	37	3	51112817	51112817	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:51112817G>A	uc011bds.1	+	7	518	c.495G>A	c.(493-495)AAG>AAA	p.K165K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	165						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TGCCTCGGAAGGACTTTGAAG	0.438													4	15					0	0	0.000602	0	0
DOCK3	1795	broad.mit.edu	37	3	51264821	51264821	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:51264821C>T	uc011bds.1	+	16	1508	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	495	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AATTGCCTATCCCCATTGACC	0.493													27	64					0	0	0.001271	0	0
DOCK3	1795	broad.mit.edu	37	3	51352490	51352490	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:51352490G>A	uc011bds.1	+	32	3356	c.3333G>A	c.(3331-3333)CGG>CGA	p.R1111R		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1111						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAGAAGTACGGAATATCATGA	0.438													7	28					0	0	0.003080	0	0
SEMA3G	56920	broad.mit.edu	37	3	52475391	52475391	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:52475391C>T	uc003dea.1	-	7	702	c.702G>A	c.(700-702)GAG>GAA	p.E234E		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	234	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GGTCAGAGTTCTCAGGGATCC	0.627													17	30					0	0	0.001523	0	0
NISCH	11188	broad.mit.edu	37	3	52524782	52524782	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:52524782C>T	uc011beg.1	+	20	3747	c.3675C>T	c.(3673-3675)TTC>TTT	p.F1225F	NISCH_uc003ded.3_Silent_p.F1225F|NISCH_uc003dee.3_Silent_p.F714F|NISCH_uc003deg.1_RNA|NISCH_uc003deh.3_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1225					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CCCAGTGCTTCGTGCTAAAGC	0.532													68	103					0	0	0.003610	0	0
STAB1	23166	broad.mit.edu	37	3	52552328	52552328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:52552328G>A	uc003dej.2	+	46	4836	c.4762G>A	c.(4762-4764)GAG>AAG	p.E1588K	STAB1_uc003dek.1_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1588	Extracellular (Potential).|FAS1 5.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GCCCCCCCAGGAGCTCCTGAG	0.542													14	34					0	0	0.001523	0	0
SFMBT1	51460	broad.mit.edu	37	3	52946618	52946618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:52946618G>A	uc003dgf.2	-	17	2235	c.1666C>T	c.(1666-1668)CTT>TTT	p.L556F	SFMBT1_uc010hmr.2_Missense_Mutation_p.L503F|SFMBT1_uc003dgg.2_Missense_Mutation_p.L556F|SFMBT1_uc003dgh.2_Missense_Mutation_p.L556F	NM_001005159	NP_001005159	Q9UHJ3	SMBT1_HUMAN	Scm-like with four mbt domains 1	556					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.91e-05)|Kidney(197;0.000644)|KIRC - Kidney renal clear cell carcinoma(197;0.000792)|OV - Ovarian serous cystadenocarcinoma(275;0.113)		AGCTCCCGAAGGACACGGCTG	0.463													26	69					0	0	0.001512	0	0
LRTM1	57408	broad.mit.edu	37	3	54952852	54952852	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:54952852G>A	uc003dhl.2	-	3	806	c.672C>T	c.(670-672)ATC>ATT	p.I224I	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	224	Extracellular (Potential).|LRRCT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		GCTCATGAGGGATCCTAAGGA	0.542													13	19					0	0	0.004007	0	0
ERC2	26059	broad.mit.edu	37	3	56330423	56330423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:56330423C>T	uc003dhr.1	-	3	954	c.698G>A	c.(697-699)CGA>CAA	p.R233Q		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	233	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TCTCTGGGTTCGCAGCTCATC	0.522													25	46					0	0	0.002780	0	0
ABHD6	57406	broad.mit.edu	37	3	58271172	58271172	+	Missense_Mutation	SNP	C	A	A	rs139332256		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:58271172C>A	uc003djs.3	+	8	1239	c.829C>A	c.(829-831)CAA>AAA	p.Q277K	ABHD6_uc003djr.2_Missense_Mutation_p.Q277K|ABHD6_uc003djt.3_Missense_Mutation_p.Q277K	NM_020676	NP_065727	Q9BV23	ABHD6_HUMAN	abhydrolase domain containing 6	277	Cytoplasmic (Potential).					integral to membrane	acylglycerol lipase activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(55;0.000225)|KIRC - Kidney renal clear cell carcinoma(284;0.0471)|Kidney(284;0.0589)|OV - Ovarian serous cystadenocarcinoma(275;0.209)		CTGGGGGAAACAAGACCAGGT	0.488													25	41					1.74807e-11	3.43055e-11	0.002096	1	0
ADAMTS9	56999	broad.mit.edu	37	3	64601088	64601088	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:64601088T>C	uc003dmg.2	-	21	3130	c.3098A>G	c.(3097-3099)GAT>GGT	p.D1033G	ADAMTS9_uc011bfo.1_Missense_Mutation_p.D1005G|ADAMTS9_uc003dmh.1_Missense_Mutation_p.D862G|ADAMTS9_uc003dmk.1_Missense_Mutation_p.D1033G|ADAMTS9_uc011bfp.1_5'UTR	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1033	TSP type-1 4.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TTTGCTGTCATCCAGTACATC	0.438													160	361					0	0	0.003610	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64627543	64627543	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:64627543G>A	uc003dmg.2	-	12	1869	c.1837C>T	c.(1837-1839)CGA>TGA	p.R613*	ADAMTS9_uc011bfo.1_Nonsense_Mutation_p.R585*|ADAMTS9_uc003dmh.1_Nonsense_Mutation_p.R442*|ADAMTS9_uc003dmk.1_Nonsense_Mutation_p.R613*	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	613	TSP type-1 1.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TTGCACTCTCGAATGGCTGTT	0.473													150	322					0	0	0.003610	0	0
LMOD3	56203	broad.mit.edu	37	3	69169130	69169130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:69169130C>T	uc003dns.2	-	2	585	c.376G>A	c.(376-378)GAA>AAA	p.E126K	LMOD3_uc003dnt.2_Missense_Mutation_p.E126K	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	126	Glu-rich.					cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		GCAACTATTTCATTATTGAGC	0.234													7	18					0	0	0.001984	0	0
FOXP1	27086	broad.mit.edu	37	3	71247436	71247436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:71247436G>A	uc003dol.2	-	2	420	c.97C>T	c.(97-99)CGG>TGG	p.R33W	FOXP1_uc003dom.2_Missense_Mutation_p.R33W|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.R33W|FOXP1_uc003dop.2_Missense_Mutation_p.R33W|FOXP1_uc003doq.1_Missense_Mutation_p.R33W|FOXP1_uc003dos.2_Missense_Mutation_p.R33W	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	33					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		CGCCCCTCCCGAAGACCGCCG	0.607			T	PAX5	ALL								57	123					0	0	0.003610	0	0
ROBO1	6091	broad.mit.edu	37	3	78696802	78696802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:78696802G>A	uc003dqe.2	-	20	3024	c.2816C>T	c.(2815-2817)CCG>CTG	p.P939L	ROBO1_uc003dqb.2_Missense_Mutation_p.P900L|ROBO1_uc003dqc.2_Intron|ROBO1_uc003dqd.2_Intron|ROBO1_uc010hoh.2_Missense_Mutation_p.P131L|ROBO1_uc011bgl.1_Missense_Mutation_p.P511L	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	939	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GGTAAAAGACGGGACTGAAAA	0.343													53	99					0	0	0.003610	0	0
ROBO1	6091	broad.mit.edu	37	3	79639024	79639024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:79639024G>A	uc003dqe.2	-	2	246	c.38C>T	c.(37-39)TCA>TTA	p.S13L		NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	13					activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GCTGAGGAGTGATATCATGAC	0.413													5	12					0	0	0.001168	0	0
EPHA3	2042	broad.mit.edu	37	3	89521633	89521633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:89521633G>A	uc003dqy.2	+	16	2935	c.2710G>A	c.(2710-2712)GAC>AAC	p.D904N	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	904	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		CCTTCTTCTGGACCAAAGCAA	0.468										TSP Lung(6;0.00050)			51	135					0	0	0.003610	0	0
EPHA3	2042	broad.mit.edu	37	3	89521768	89521768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:89521768G>A	uc003dqy.2	+	16	3070	c.2845G>A	c.(2845-2847)GAT>AAT	p.D949N	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	949	Cytoplasmic (Potential).|SAM.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GATTTCCACAGAGTAAGAAAA	0.383										TSP Lung(6;0.00050)			16	26					0	0	0.003163	0	0
OR5H6	79295	broad.mit.edu	37	3	97983347	97983347	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:97983347C>T	uc003dsi.1	+	1	219	c.219C>T	c.(217-219)ATC>ATT	p.I73I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						ACCTTCATATCCCAATGTACT	0.418													32	64					0	0	0.003271	0	0
OR5K4	403278	broad.mit.edu	37	3	98072952	98072952	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:98072952C>T	uc011bgv.1	+	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TAGAGAATTTCTTTTCTGAGG	0.433													76	144					0	0	0.003610	0	0
IMPG2	50939	broad.mit.edu	37	3	100964655	100964655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:100964655C>T	uc003duq.1	-	12	1737	c.1534G>A	c.(1534-1536)GTA>ATA	p.V512I	IMPG2_uc011bhe.1_Missense_Mutation_p.V375I	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	512	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						CCATCTTCTACCAAGTGAGAT	0.433													50	96					0	0	0.003610	0	0
ZPLD1	131368	broad.mit.edu	37	3	102183090	102183090	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:102183090C>T	uc003dvs.1	+	14	1638	c.756C>T	c.(754-756)TTC>TTT	p.F252F	ZPLD1_uc003dvt.1_Silent_p.F268F|ZPLD1_uc011bhg.1_Silent_p.F252F	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	252	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ATGATCTTTTCCTTAGGTAAG	0.313													43	94					0	0	0.002222	0	0
ZPLD1	131368	broad.mit.edu	37	3	102189276	102189276	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:102189276G>A	uc003dvs.1	+	16	1854	c.972G>A	c.(970-972)AGG>AGA	p.R324R	ZPLD1_uc003dvt.1_Silent_p.R340R|ZPLD1_uc011bhg.1_Silent_p.R324R	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	324	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						CTGGGAGGAGGACGACTTGGA	0.507													16	50					0	0	0.006122	0	0
CD47	961	broad.mit.edu	37	3	107777218	107777218	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:107777218G>A	uc003dwt.1	-	6	930	c.750C>T	c.(748-750)ATC>ATT	p.I250I	CD47_uc003dwu.1_Silent_p.I250I|CD47_uc003dwv.1_Silent_p.I250I|CD47_uc003dww.1_Silent_p.I250I	NM_001777	NP_001768	Q08722	CD47_HUMAN	CD47 antigen isoform 1 precursor	250	Helical; (Potential).				blood coagulation|cell adhesion|cell junction assembly|integrin-mediated signaling pathway|leukocyte migration|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to plasma membrane	protein binding|thrombospondin receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(3;0.0191)|Epithelial(53;0.118)			CCACAGCGAGGATATAGGCTA	0.428													4	3					0	0	0.000248	0	0
MYH15	22989	broad.mit.edu	37	3	108212016	108212016	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:108212016G>A	uc003dxa.1	-	9	837	c.780C>T	c.(778-780)TTC>TTT	p.F260F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	260	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCATCCTGATGAATTTGCCCT	0.388													19	34					0	0	0.002299	0	0
MORC1	27136	broad.mit.edu	37	3	108818307	108818308	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:108818307_108818308GG>AA	uc003dxl.2	-	6	407_408	c.320_321CC>TT	c.(319-321)TCC>TTT	p.S107F	MORC1_uc011bhn.1_Missense_Mutation_p.S107F	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	107					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CAATTCTCATGGACCCACTATA	0.351													11	27					0	0	0.004672	0	0
SLC9A10	285335	broad.mit.edu	37	3	111927047	111927047	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:111927047T>A	uc003dyu.2	-	16	2186	c.1964A>T	c.(1963-1965)TAT>TTT	p.Y655F	SLC9A10_uc011bhu.1_Intron|SLC9A10_uc010hqc.2_Missense_Mutation_p.Y607F	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	655	Helical; (Potential).|Ion transport-like.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						CTCTAGAATATAAAGTGTAAG	0.323													45	109					0	0	0.003610	0	0
CD200	4345	broad.mit.edu	37	3	112064089	112064089	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:112064089C>T	uc003dyw.2	+	4	594	c.450C>T	c.(448-450)ACC>ACT	p.T150T	CD200_uc010hqd.1_Missense_Mutation_p.P11L|CD200_uc003dyx.2_Silent_p.T125T|CD200_uc003dyy.2_Missense_Mutation_p.P11L|CD200_uc003dyz.2_Silent_p.T51T	NM_001004196	NP_001004196	P41217	OX2G_HUMAN	CD200 antigen isoform b	125	Ig-like V-type.|Extracellular (Potential).				regulation of immune response	integral to plasma membrane					0		Acute lymphoblastic leukemia(4;1.7e-08)|all_hematologic(4;8.82e-05)				TCTTCAATACCTTTGGTTTTG	0.443													17	40					0	0	0.002780	0	0
ATP6V1A	523	broad.mit.edu	37	3	113513742	113513742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:113513742C>T	uc003eao.2	+	9	1078	c.1012C>T	c.(1012-1014)CGT>TGT	p.R338C	ATP6V1A_uc011bik.1_Missense_Mutation_p.R305C	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	338					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						AGAGTACTTCCGTGACATGGG	0.408													54	110					0	0	0.003610	0	0
KIAA1407	57577	broad.mit.edu	37	3	113724708	113724708	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:113724708A>G	uc003eax.2	-	10	1662	c.1515T>C	c.(1513-1515)GGT>GGC	p.G505G	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Silent_p.G483G|KIAA1407_uc011bip.1_Silent_p.G492G	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	505										ovary(2)	2						TCTGAAGGGAACCCTGCAAGT	0.547													44	80					0	0	0.003214	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119134375	119134375	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:119134375T>C	uc003ecj.3	+	12	4131	c.3599T>C	c.(3598-3600)GTC>GCC	p.V1200A		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	1200					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GCCAGGGCGGTCCCAGTCATC	0.582													23	30					0	0	0.003330	0	0
POPDC2	64091	broad.mit.edu	37	3	119379156	119379156	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:119379156G>A	uc003ecx.1	-	1	249	c.115C>T	c.(115-117)CTG>TTG	p.L39L	POPDC2_uc010hqw.1_Silent_p.L39L|POPDC2_uc003ecy.1_Intron	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	39	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		ATGAAGCCCAGGAGTAAGAGG	0.572													9	31					0	0	0.000673	0	0
POLQ	10721	broad.mit.edu	37	3	121215716	121215716	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:121215716C>T	uc003eee.3	-	14	2346	c.2217G>A	c.(2215-2217)CAG>CAA	p.Q739Q		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	739					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		ATCCATATTTCTGATTTATTT	0.368								DNA_polymerases_(catalytic_subunits)					34	64					0	0	0.002836	0	0
ILDR1	286676	broad.mit.edu	37	3	121712217	121712217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:121712217C>T	uc003ees.2	-	7	1485	c.1379G>A	c.(1378-1380)GGG>GAG	p.G460E	ILDR1_uc003eeq.2_Missense_Mutation_p.G428E|ILDR1_uc003eer.2_Missense_Mutation_p.G416E|ILDR1_uc010hrg.2_Missense_Mutation_p.G371E	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	460	Cytoplasmic (Potential).|Arg-rich.					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GCGTCGTCTCCCGTGCCTCTG	0.692													8	11					0	0	0.003080	0	0
CD86	942	broad.mit.edu	37	3	121825205	121825205	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:121825205G>A	uc003eet.2	+	4	677	c.561G>A	c.(559-561)CAG>CAA	p.Q187Q	CD86_uc011bjo.1_Silent_p.Q105Q|CD86_uc011bjp.1_Silent_p.Q75Q|CD86_uc003eeu.2_Silent_p.Q181Q	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	187	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	GTGTTATGCAGAAATCTCAAG	0.398													36	59					0	0	0.004289	0	0
CD86	942	broad.mit.edu	37	3	121828124	121828124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:121828124C>T	uc003eet.2	+	5	832	c.716C>T	c.(715-717)CCT>CTT	p.P239L	CD86_uc011bjo.1_Missense_Mutation_p.P157L|CD86_uc011bjp.1_Missense_Mutation_p.P127L|CD86_uc003eeu.2_Missense_Mutation_p.P233L	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	239	Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	CTTGAGGACCCTCAGCCTCCC	0.418													17	44					0	0	0.001523	0	0
CASR	846	broad.mit.edu	37	3	122002631	122002631	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:122002631G>A	uc003eev.3	+	7	2202	c.1830G>A	c.(1828-1830)GAG>GAA	p.E610E	CASR_uc003eew.3_Silent_p.E620E	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	610	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CGTGGACGGAGCCCTTTGGGA	0.532													21	47					0	0	0.001523	0	0
PARP9	83666	broad.mit.edu	37	3	122247434	122247434	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:122247434G>T	uc010hri.2	-	11	2487	c.2342C>A	c.(2341-2343)CCC>CAC	p.P781H	PARP9_uc003eff.3_Missense_Mutation_p.P746H|PARP9_uc011bjs.1_Missense_Mutation_p.P746H|PARP9_uc003efg.2_Missense_Mutation_p.P326H|PARP9_uc003efi.2_Missense_Mutation_p.P746H|PARP9_uc003efh.2_Missense_Mutation_p.P781H	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	781	PARP catalytic.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		CAGTGGTGGGGGAACAATATT	0.458													30	67					2.09667e-21	4.14464e-21	0.003755	1	0
PARP15	165631	broad.mit.edu	37	3	122354670	122354670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:122354670G>A	uc003efm.2	+	12	1826	c.1760G>A	c.(1759-1761)GGA>GAA	p.G587E	PARP15_uc003efn.2_Missense_Mutation_p.G392E|PARP15_uc003efo.1_Missense_Mutation_p.G334E|PARP15_uc003efp.1_Missense_Mutation_p.G353E|PARP15_uc011bjt.1_Missense_Mutation_p.G284E	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	565	PARP catalytic.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity	p.G353E(1)		lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		GTATCCTATGGAAAAGGAACC	0.403													20	37					0	0	0.001216	0	0
PARP14	54625	broad.mit.edu	37	3	122405958	122405958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:122405958C>T	uc003efq.3	+	3	412	c.353C>T	c.(352-354)CCA>CTA	p.P118L		NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		GTTAAAGAACCAGGTAAAATC	0.363													5	11					0	0	0.000602	0	0
UMPS	7372	broad.mit.edu	37	3	124456749	124456749	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:124456749C>T	uc003ehl.3	+	3	751	c.645C>T	c.(643-645)CCC>CCT	p.P215P	UMPS_uc003ehm.3_RNA|UMPS_uc011bka.1_Intron|UMPS_uc011bkb.1_Silent_p.P123P|UMPS_uc011bkc.1_Silent_p.P37P|UMPS_uc003ehn.3_Silent_p.P37P|UMPS_uc011bkd.1_Silent_p.P37P	NM_000373	NP_000364	P11172	UMPS_HUMAN	uridine monophosphate synthase	215	Domain linker.				'de novo' pyrimidine base biosynthetic process|'de novo' UMP biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.146)		ATGGTTCTCCCCTTTCTATAA	0.478													15	35					0	0	0.004007	0	0
HEG1	57493	broad.mit.edu	37	3	124732282	124732282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:124732282G>A	uc003ehs.3	-	6	2209	c.2141C>T	c.(2140-2142)TCC>TTC	p.S714F	HEG1_uc011bke.1_Missense_Mutation_p.S814F	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	714	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						TGATGGTGAGGAAGACCATGG	0.458													24	55					0	0	0.003330	0	0
SLC12A8	84561	broad.mit.edu	37	3	124839505	124839505	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:124839505C>T	uc003ehv.3	-	7	873	c.762G>A	c.(760-762)GGG>GGA	p.G254G	SLC12A8_uc003ehw.3_Silent_p.G283G|SLC12A8_uc010hrz.1_Silent_p.G119G|SLC12A8_uc003eht.3_Silent_p.G55G|SLC12A8_uc003ehu.3_Silent_p.G7G|SLC12A8_uc010hry.2_Silent_p.G7G	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	254	Helical; (Potential).				potassium ion transport	integral to membrane	symporter activity				0						TGAGGTCGCCCCCCATGTTGA	0.632													11	9					0	0	0.000978	0	0
ZNF148	7707	broad.mit.edu	37	3	124952124	124952124	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:124952124G>A	uc003ehx.3	-	9	1932	c.1446C>T	c.(1444-1446)AAC>AAT	p.N482N	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Silent_p.N482N|ZNF148_uc010hsa.2_Silent_p.N482N|ZNF148_uc003eia.3_Silent_p.N482N|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	482					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						CCCTGCTGTTGTTACTTGCTG	0.453													22	35					0	0	0.001523	0	0
Unknown	0	broad.mit.edu	37	3	126916110	126916110	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:126916110C>T	uc003eji.1	+	2	822	c.582C>T	c.(580-582)TTC>TTT	p.F194F						RecName: Full=Putative uncharacterized protein C3orf56;																		CCTCCAGGTTCGGTATTTGGG	0.632													17	20					0	0	0.001216	0	0
COL6A6	131873	broad.mit.edu	37	3	130311917	130311917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:130311917G>A	uc010htl.2	+	15	4415	c.4384G>A	c.(4384-4386)GAA>AAA	p.E1462K	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1462	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AGAAGTTGGGGAAAATGGAAT	0.368													80	168					0	0	0.003610	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133661613	133661613	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:133661613C>T	uc003eqa.3	-	11	1736	c.1462_splice	c.e11-1	p.I488_splice	SLCO2A1_uc003eqb.3_Splice_Site_p.I412_splice|SLCO2A1_uc011blv.1_Intron	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,						sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						TCAAATAGATCTTCAAGAGGA	0.517													4	83					0	0	0.000602	0	0
PPP2R3A	5523	broad.mit.edu	37	3	135721177	135721177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:135721177G>A	uc003eqv.1	+	2	1402	c.837G>A	c.(835-837)ATG>ATA	p.M279I	PPP2R3A_uc011blz.1_Intron	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	279					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						CTGTCTATATGAATGTAATGA	0.358													7	17					0	0	0.000443	0	0
ESYT3	83850	broad.mit.edu	37	3	138184193	138184193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:138184193G>A	uc003esk.2	+	10	1325	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	367	C2 1.					integral to membrane|plasma membrane					0						CATGGTGTACGAAGTCCCTGG	0.557													50	122					0	0	0.003610	0	0
ESYT3	83850	broad.mit.edu	37	3	138184241	138184241	+	Missense_Mutation	SNP	G	A	A	rs146734321	by1000genomes	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:138184241G>A	uc003esk.2	+	10	1373	c.1147G>A	c.(1147-1149)GAC>AAC	p.D383N	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	383	C2 1.					integral to membrane|plasma membrane					0						TGAGGATACCGACAGGGATGA	0.592													67	129					0	0	0.003610	0	0
CLSTN2	64084	broad.mit.edu	37	3	140178488	140178488	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:140178488C>A	uc003etn.2	+	7	1289	c.1099C>A	c.(1099-1101)CCC>ACC	p.P367T	CLSTN2_uc003etm.2_Missense_Mutation_p.P367T	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	367	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						TGCCAAAGTCCCCGATGGGAT	0.572										HNSCC(16;0.037)			18	33					1.33834e-09	2.62053e-09	0.000958	1	0
SPSB4	92369	broad.mit.edu	37	3	140785431	140785431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:140785431C>T	uc003ett.2	+	2	739	c.485C>T	c.(484-486)CCG>CTG	p.P162L	SPSB4_uc010hum.2_Missense_Mutation_p.P162L	NM_080862	NP_543138	Q96A44	SPSB4_HUMAN	splA/ryanodine receptor domain and SOCS box	162	B30.2/SPRY.				intracellular signal transduction	cytoplasm	protein binding				0						GTGGCCTACCCGGCCTTTCTG	0.682													4	4					0	0	0.000248	0	0
ACPL2	92370	broad.mit.edu	37	3	141011256	141011256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:141011256C>T	uc003etu.2	+	8	951	c.652C>T	c.(652-654)CTT>TTT	p.L218F	ACPL2_uc003etv.2_Missense_Mutation_p.L218F|ACPL2_uc011bna.1_Missense_Mutation_p.L180F|ACPL2_uc011bnb.1_Missense_Mutation_p.L201F	NM_152282	NP_689495	Q8TE99	ACPL2_HUMAN	acid phosphatase-like 2 precursor	218						extracellular region	acid phosphatase activity			skin(1)	1						GCTGGCCTTGCTTTATGGCTT	0.483													24	47					0	0	0.003954	0	0
ZBTB38	253461	broad.mit.edu	37	3	141161981	141161981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:141161981G>A	uc003etw.2	+	8	1733	c.751G>A	c.(751-753)GAA>AAA	p.E251K	ZBTB38_uc010hun.2_Missense_Mutation_p.E248K|ZBTB38_uc010huo.2_Missense_Mutation_p.E251K|ZBTB38_uc003ety.2_Missense_Mutation_p.E251K|ZBTB38_uc010hup.2_Missense_Mutation_p.E252K	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	251					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CACAGGGAAAGAAAATTGTGA	0.478													13	26					0	0	0.001368	0	0
RASA2	5922	broad.mit.edu	37	3	141289762	141289762	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:141289762T>C	uc003etz.1	+	10	872	c.872T>C	c.(871-873)CTA>CCA	p.L291P	RASA2_uc010huq.1_Missense_Mutation_p.L291P|RASA2_uc003eua.1_Missense_Mutation_p.L291P|RASA2_uc011bnc.1_5'UTR	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	291					intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						AGGTACTTGCTACAGCCAAGA	0.358													11	24					0	0	0.001368	0	0
SR140	23350	broad.mit.edu	37	3	142720497	142720497	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:142720497T>C	uc003evh.1	+	1	126	c.27T>C	c.(25-27)TCT>TCC	p.S9S	SR140_uc003evi.1_5'UTR|SR140_uc011bnj.1_Silent_p.S9S|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Silent_p.S9S	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	9					RNA processing	nucleus	nucleotide binding|RNA binding				0						CAGGCGGATCTCAGAAGGCCA	0.572													13	31					0	0	0.004990	0	0
SLC9A9	285195	broad.mit.edu	37	3	143292979	143292979	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:143292979G>A	uc003evn.2	-	8	1133	c.951C>T	c.(949-951)TTC>TTT	p.F317F		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	317	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						AAGAAAGCAGGAAAAACAGGC	0.498													17	33					0	0	0.001882	0	0
MED12L	116931	broad.mit.edu	37	3	150908543	150908543	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:150908543A>G	uc003eyp.2	+	13	1831	c.1793A>G	c.(1792-1794)AAC>AGC	p.N598S	MED12L_uc011bnz.1_Missense_Mutation_p.N458S|MED12L_uc003eyn.2_Missense_Mutation_p.N598S|MED12L_uc003eyo.2_Missense_Mutation_p.N598S	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	598					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GAATTTGTGAACCTGGTGCTG	0.438													16	33					0	0	0.001216	0	0
MED12L	116931	broad.mit.edu	37	3	150908568	150908568	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:150908568C>T	uc003eyp.2	+	13	1856	c.1818C>T	c.(1816-1818)TTC>TTT	p.F606F	MED12L_uc011bnz.1_Silent_p.F466F|MED12L_uc003eyn.2_Silent_p.F606F|MED12L_uc003eyo.2_Silent_p.F606F	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	606					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCTGCGAGTTCATCCGCCATG	0.478													17	38					0	0	0.004990	0	0
MED12L	116931	broad.mit.edu	37	3	151105867	151105867	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:151105867C>T	uc003eyp.2	+	35	5291	c.5253C>T	c.(5251-5253)TCC>TCT	p.S1751S	MED12L_uc011bnz.1_Silent_p.S1611S|MED12L_uc003eyy.1_Silent_p.S914S	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1751					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AAAGGAAGTCCGCTGAGCTGT	0.502													15	16					0	0	0.003163	0	0
IGSF10	285313	broad.mit.edu	37	3	151161357	151161357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:151161357C>T	uc011bod.1	-	5	5378	c.5378G>A	c.(5377-5379)GGA>GAA	p.G1793E	IGSF10_uc011bob.1_5'Flank|IGSF10_uc011boc.1_5'Flank	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1793	Ig-like C2-type 4.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTGCCTACTTCCCTGGGATGA	0.502													16	41					0	0	0.004990	0	0
IGSF10	285313	broad.mit.edu	37	3	151164367	151164367	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:151164367G>A	uc011bod.1	-	4	3402	c.3402C>T	c.(3400-3402)TCC>TCT	p.S1134S		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1134					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GAGTCACTTGGGAAATTTCAG	0.413													60	123					0	0	0.003610	0	0
KCNAB1	7881	broad.mit.edu	37	3	155838494	155838494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:155838494G>A	uc003far.2	+	1	158	c.94G>A	c.(94-96)GAC>AAC	p.D32N	KCNAB1_uc011bon.1_Missense_Mutation_p.D32N	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	32						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			AGCAGGGAAAGACAAATCTCC	0.567													46	70					0	0	0.002522	0	0
LEKR1	389170	broad.mit.edu	37	3	156710999	156710999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:156710999G>A	uc003fba.1	+	10	1465	c.130G>A	c.(130-132)GAA>AAA	p.E44K		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TGCAGAAAATGAACTGGAGAT	0.328													37	80					0	0	0.001485	0	0
SI	6476	broad.mit.edu	37	3	164754210	164754210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:164754210C>T	uc003fei.2	-	22	2544	c.2482G>A	c.(2482-2484)GGA>AGA	p.G828R		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	828	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AAAAAGTCTCCTTTGGCTGTG	0.343										HNSCC(35;0.089)			7	11					0	0	0.000443	0	0
SERPINI1	5274	broad.mit.edu	37	3	167510533	167510533	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:167510533C>T	uc003ffa.3	+	4	835	c.637C>T	c.(637-639)CAA>TAA	p.Q213*	SERPINI1_uc003ffb.3_Nonsense_Mutation_p.Q213*	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	213					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						AAGTGAAGTCCAAATTCCAAT	0.338													17	50					0	0	0.002780	0	0
SAMD7	344658	broad.mit.edu	37	3	169644830	169644830	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:169644830G>A	uc003fgd.2	+	6	1047	c.780G>A	c.(778-780)AGG>AGA	p.R260R	SAMD7_uc003fge.2_Silent_p.R260R|SAMD7_uc011bpo.1_Silent_p.R161R	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	260										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			CCACCCATAGGAAACCCTGGG	0.522													20	56					0	0	0.002780	0	0
PRKCI	5584	broad.mit.edu	37	3	169977775	169977775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:169977775C>T	uc003fgs.2	+	3	480	c.242C>T	c.(241-243)TCA>TTA	p.S81L		NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	81	Interaction with PARD6A.|Regulatory domain.|OPR.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TGTACAGTATCATCTCAGTTG	0.338													32	58					0	0	0.001485	0	0
TNIK	23043	broad.mit.edu	37	3	170908526	170908526	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:170908526C>T	uc003fhh.2	-	6	813	c.468G>A	c.(466-468)GGG>GGA	p.G156G	TNIK_uc003fhi.2_Silent_p.G156G|TNIK_uc003fhj.2_Silent_p.G156G|TNIK_uc003fhk.2_Silent_p.G156G|TNIK_uc003fhl.2_Silent_p.G156G|TNIK_uc003fhm.2_Silent_p.G156G|TNIK_uc003fhn.2_Silent_p.G156G|TNIK_uc003fho.2_Silent_p.G156G	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	156	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			AGACATTTTGCCCTTTAATAT	0.418													5	16					0	0	0.001168	0	0
CCDC39	339829	broad.mit.edu	37	3	180372635	180372635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:180372635C>T	uc010hxe.2	-	7	960	c.845G>A	c.(844-846)AGA>AAA	p.R282K	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	282					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			CACAGAAATTCTTTTCTCAAA	0.358													13	30					0	0	0.002450	0	0
HTR3C	170572	broad.mit.edu	37	3	183777792	183777792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:183777792G>A	uc003fmk.2	+	8	1136	c.1102G>A	c.(1102-1104)GGA>AGA	p.G368R		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	368	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GCCCCAGAAGGGAAATAAGGG	0.642													4	15					0	0	0.000248	0	0
ETV5	2119	broad.mit.edu	37	3	185766567	185766567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:185766567G>A	uc003fpz.2	-	13	1641	c.1394C>T	c.(1393-1395)CCG>CTG	p.P465L	ETV5_uc003fpy.2_Missense_Mutation_p.P507L	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	465					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			CTTCAGGAACGGACGCTGGTT	0.592			T	TMPRSS2|SCL45A3	Prostate 								12	34					0	0	0.002450	0	0
CPN2	1370	broad.mit.edu	37	3	194062171	194062171	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:194062171G>A	uc003fts.2	-	2	1351	c.1261C>T	c.(1261-1263)CAG>TAG	p.Q421*		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	421	LRRCT.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CAGTAGGTCTGGATGTTCAGG	0.622													18	22					0	0	0.006122	0	0
SENP5	205564	broad.mit.edu	37	3	196613461	196613461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:196613461C>T	uc003fwz.3	+	2	1658	c.1409C>T	c.(1408-1410)CCC>CTC	p.P470L	SENP5_uc011bty.1_Missense_Mutation_p.P470L	NM_152699	NP_689912	Q96HI0	SENP5_HUMAN	SUMO1/sentrin specific peptidase 5	470					cell cycle|cell division|proteolysis	nucleolus	cysteine-type peptidase activity			breast(2)|lung(1)	3	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;3.14e-24)|all cancers(36;2.1e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.004)		CTGGAGGCTCCCTTGGTGTGC	0.478													31	35					0	0	0.001786	0	0
ZNF595	152687	broad.mit.edu	37	4	60001	60001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:60001G>A	uc003fzv.1	+	3	337	c.181G>A	c.(181-183)GAG>AAG	p.E61K	ZNF595_uc003fzu.1_RNA|ZNF718_uc003fzt.3_Missense_Mutation_p.E61K|ZNF595_uc010iay.1_RNA|ZNF595_uc011bus.1_Intron|ZNF595_uc011but.1_Intron	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	61					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		GCAAATAAAAGAGCCCTGCAA	0.448													5	133					0	0	0.000602	0	0
PDE6B	5158	broad.mit.edu	37	4	659089	659089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:659089G>A	uc003gap.2	+	19	2292	c.2239G>A	c.(2239-2241)GAA>AAA	p.E747K	PDE6B_uc003gao.3_Missense_Mutation_p.E747K|PDE6B_uc011buy.1_Missense_Mutation_p.E468K|PDE6B_uc011buz.1_Missense_Mutation_p.E179K	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	747					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						AGGTGACTTGGAAAGGACAGT	0.587													13	61					0	0	0.004990	0	0
DGKQ	1609	broad.mit.edu	37	4	955780	955780	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:955780A>G	uc003gbw.2	-	19	2379	c.2305T>C	c.(2305-2307)TTC>CTC	p.F769L	DGKQ_uc010ibn.2_Missense_Mutation_p.F756L	NM_001347	NP_001338	P52824	DGKQ_HUMAN	diacylglycerol kinase, theta	769					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|platelet activation|protein kinase C signaling cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to ATP|thrombin receptor signaling pathway	cytoskeleton|cytosol|nuclear speck|plasma membrane	activating transcription factor binding|ATP binding|diacylglycerol kinase activity|kinase binding|metal ion binding|phospholipase binding			kidney(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			CTGCTTGTGAACTTGCCAGGC	0.632													35	134					0	0	0.001485	0	0
RNF212	285498	broad.mit.edu	37	4	1090587	1090587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:1090587C>T	uc003gcj.2	-	3	542	c.212G>A	c.(211-213)AGT>AAT	p.S71N	RNF212_uc003gci.2_Missense_Mutation_p.S71N|RNF212_uc010ibp.2_RNA|RNF212_uc010ibq.2_Missense_Mutation_p.S71N|RNF212_uc003gck.2_Missense_Mutation_p.S71N	NM_001131034	NP_001124506	Q495C1	RN212_HUMAN	ring finger protein 212 isoform a	71							zinc ion binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (64;0.151)		CTTACACAGACTGTCTATGCT	0.502													78	398					0	0	0.003610	0	0
MAEA	10296	broad.mit.edu	37	4	1305797	1305797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:1305797C>T	uc003gda.2	+	2	130	c.100C>T	c.(100-102)CGC>TGC	p.R34C	MAEA_uc010ibs.1_Missense_Mutation_p.R34C|MAEA_uc003gdb.2_Missense_Mutation_p.R34C|MAEA_uc011bvb.1_Missense_Mutation_p.R34C|MAEA_uc003gdc.2_Missense_Mutation_p.R34C|MAEA_uc003gdd.2_RNA|MAEA_uc011bvc.1_Missense_Mutation_p.R33C|MAEA_uc011bvd.1_5'UTR	NM_001017405	NP_001017405	Q7L5Y9	MAEA_HUMAN	macrophage erythroblast attacher isoform 1	34	Extracellular and involved in cell to cell contact.				cell adhesion|cell cycle|cell division|erythrocyte maturation|negative regulation of myeloid cell apoptosis|regulation of mitotic cell cycle	actomyosin contractile ring|integral to plasma membrane|membrane fraction|nuclear matrix|spindle	actin binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(23;0.0201)			CAAACGCTTTCGCGCCGCTCA	0.642													23	46					0	0	0.001061	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2306962	2306962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:2306962G>A	uc003gex.1	-	8	1424	c.1105C>T	c.(1105-1107)CCA>TCA	p.P369S	ZFYVE28_uc011bvk.1_Missense_Mutation_p.P299S|ZFYVE28_uc011bvl.1_Missense_Mutation_p.P339S|ZFYVE28_uc003gew.1_Missense_Mutation_p.P255S	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	369					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						CTGTGAGCTGGGGACTGGCAG	0.672													43	27					0	0	0.002222	0	0
FAM193A	8603	broad.mit.edu	37	4	2659588	2659588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:2659588G>A	uc010icl.2	+	6	848	c.497G>A	c.(496-498)AGA>AAA	p.R166K	FAM193A_uc010ick.2_Missense_Mutation_p.R366K|FAM193A_uc003gfd.2_Missense_Mutation_p.R166K|FAM193A_uc011bvm.1_Missense_Mutation_p.R190K|FAM193A_uc011bvn.1_Missense_Mutation_p.R166K|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.R20K	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	166										ovary(3)	3						TTTAAACAAAGAAGATTCATT	0.358													106	295					0	0	0.003610	0	0
HTT	3064	broad.mit.edu	37	4	3123107	3123107	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:3123107T>C	uc011bvq.1	+	10	1372	c.1227T>C	c.(1225-1227)GCT>GCC	p.A409A		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	407					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TCACCGCTGCTAAGGAGGAGT	0.542													24	73					0	0	0.001061	0	0
EVC2	132884	broad.mit.edu	37	4	5624544	5624544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:5624544G>A	uc003gij.2	-	14	2275	c.2221C>T	c.(2221-2223)CTT>TTT	p.L741F	EVC2_uc011bwb.1_Missense_Mutation_p.L181F|EVC2_uc003gik.2_Missense_Mutation_p.L661F	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	741	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						AACAGCGAAAGGGTCAGGGTC	0.647													23	71					0	0	0.003954	0	0
SORCS2	57537	broad.mit.edu	37	4	7725580	7725580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:7725580G>A	uc003gkb.3	+	19	2581	c.2581G>A	c.(2581-2583)GAT>AAT	p.D861N	SORCS2_uc011bwi.1_Missense_Mutation_p.D689N	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	861	PKD.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						GGCAGGCCACGATGAGGCGGT	0.473													20	51					0	0	0.001882	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229300	8229300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:8229300G>A	uc003gkv.3	+	12	1980	c.1879G>A	c.(1879-1881)GCC>ACC	p.A627T	SH3TC1_uc003gkw.3_Missense_Mutation_p.A551T|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	627	TPR 2.						binding			large_intestine(2)|pancreas(1)	3						GGTGCCCAAAGCCATGGCCCT	0.662													20	49					0	0	0.000958	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229977	8229977	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:8229977G>A	uc003gkv.3	+	12	2657	c.2556G>A	c.(2554-2556)CGG>CGA	p.R852R	SH3TC1_uc003gkw.3_Silent_p.R776R|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	852							binding			large_intestine(2)|pancreas(1)	3						AGTCTGTCCGGGATGCAGTGG	0.677													19	53					0	0	0.001216	0	0
HTRA3	94031	broad.mit.edu	37	4	8293165	8293165	+	Silent	SNP	C	T	T	rs144431760		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:8293165C>T	uc003gla.2	+	4	981	c.777C>T	c.(775-777)ATC>ATT	p.I259I	HTRA3_uc003gkz.2_Silent_p.I259I	NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	259	Serine protease.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						TGGTGGCCATCGGCAGTCCCT	0.622													53	47					0	0	0.003610	0	0
CPZ	8532	broad.mit.edu	37	4	8620164	8620164	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:8620164G>A	uc003glm.2	+	10	1638	c.1512G>A	c.(1510-1512)CGG>CGA	p.R504R	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Silent_p.R367R|CPZ_uc003glo.2_Silent_p.R493R|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	504					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						AGGTGCACCGGGGCATCAAAG	0.577													14	51					0	0	0.006122	0	0
DRD5	1816	broad.mit.edu	37	4	9784034	9784034	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:9784034C>T	uc003gmb.3	+	1	777	c.381C>T	c.(379-381)TCC>TCT	p.S127S		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	127	Helical; Name=3; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CCACTGCCTCCATCCTGAACC	0.617													7	38					0	0	0.004482	0	0
SLC2A9	56606	broad.mit.edu	37	4	9892302	9892302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:9892302G>A	uc003gmc.2	-	9	1208	c.1147C>T	c.(1147-1149)CTC>TTC	p.L383F	SLC2A9_uc003gmd.2_Missense_Mutation_p.L354F	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	383	Helical; Name=9; (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						CCAATGAGGAGGGGTCTCCGT	0.527													32	35					0	0	0.002836	0	0
ZNF518B	85460	broad.mit.edu	37	4	10445436	10445436	+	Silent	SNP	G	A	A	rs138229174		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:10445436G>A	uc003gmn.2	-	3	3004	c.2517C>T	c.(2515-2517)ATC>ATT	p.I839I		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	839					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						GAGGTGTCTCGATATTTGGGG	0.458													36	108					0	0	0.003755	0	0
BOD1L	259282	broad.mit.edu	37	4	13603231	13603231	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:13603231T>G	uc003gmz.1	-	10	5410	c.5293A>C	c.(5293-5295)AAT>CAT	p.N1765H	BOD1L_uc010idr.1_Missense_Mutation_p.N1102H	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1765							DNA binding			ovary(5)|breast(1)	6						GGTGCATCATTATCTCCCAGG	0.522													9	423					0	0	0.000443	0	0
PROM1	8842	broad.mit.edu	37	4	16040580	16040580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:16040580C>T	uc003goo.2	-	2	477	c.265G>A	c.(265-267)GAT>AAT	p.D89N	PROM1_uc003gor.2_Missense_Mutation_p.D89N|PROM1_uc003gos.2_Missense_Mutation_p.D89N|PROM1_uc003got.2_Missense_Mutation_p.D89N|PROM1_uc003gou.2_Missense_Mutation_p.D89N|PROM1_uc003gop.2_Missense_Mutation_p.D89N|PROM1_uc003goq.3_Missense_Mutation_p.D89N|PROM1_uc010iec.1_5'UTR	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	89	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						TTGTCATAATCAATTTTGGAT	0.249													6	22					0	0	0.003080	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815708	23815708	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:23815708G>A	uc003gqs.2	-	8	1518	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	466					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TGGGATGACCGAAGTGCTTGT	0.488													18	59					0	0	0.006122	0	0
SEL1L3	23231	broad.mit.edu	37	4	25777909	25777909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:25777909C>T	uc003gru.3	-	17	2811	c.2659G>A	c.(2659-2661)GAA>AAA	p.E887K	SEL1L3_uc003grv.2_Missense_Mutation_p.E294K	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	887						integral to membrane	binding				0						CATGAACCTTCCAGGTAGGCA	0.413													18	67					0	0	0.001216	0	0
PCDH7	5099	broad.mit.edu	37	4	30724721	30724721	+	Silent	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:30724721G>T	uc003gsk.1	+	1	2685	c.1677G>T	c.(1675-1677)GCG>GCT	p.A559A	PCDH7_uc011bxw.1_Silent_p.A512A|PCDH7_uc011bxx.1_Silent_p.A559A	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	559	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						CGGTGCTGGCGACAGACGCAG	0.607													22	15					6.33239e-15	1.24723e-14	0.001523	1	0
TBC1D1	23216	broad.mit.edu	37	4	38020051	38020051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:38020051C>T	uc003gtb.2	+	4	1302	c.959C>T	c.(958-960)TCC>TTC	p.S320F	TBC1D1_uc011byd.1_Missense_Mutation_p.S320F|TBC1D1_uc010ifd.2_Intron|TBC1D1_uc011byf.1_Missense_Mutation_p.S191F	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	320	PID.					nucleus	Rab GTPase activator activity			ovary(1)	1						AAGGAGATATCCTTTTGCTCT	0.303													23	38					0	0	0.002299	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356480	40356480	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:40356480G>A	uc003gva.1	+	5	1399	c.1383G>A	c.(1381-1383)TGG>TGA	p.W461*		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	461	Helical; (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	TCTTCATGTGGATTTTTTTCA	0.408													53	110					0	0	0.003610	0	0
GABRB1	2560	broad.mit.edu	37	4	47427775	47427775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:47427775G>A	uc003gxh.2	+	9	1539	c.1165G>A	c.(1165-1167)GAC>AAC	p.D389N	GABRB1_uc011bze.1_Missense_Mutation_p.D319N	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	389	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GAGCGTGAGCGACCCCAAGGC	0.627													19	59					0	0	0.000958	0	0
CORIN	10699	broad.mit.edu	37	4	47605664	47605664	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:47605664C>T	uc003gxm.2	-	20	2655	c.2562G>A	c.(2560-2562)TGG>TGA	p.W854*	CORIN_uc011bzf.1_Nonsense_Mutation_p.W715*|CORIN_uc011bzg.1_Nonsense_Mutation_p.W787*	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	854	Extracellular (Potential).|Peptidase S1.			W -> R (in Ref. 4; AAF21966).	peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GCACCACTTTCCAAACTGCAG	0.398													18	22					0	0	0.001216	0	0
CNGA1	1259	broad.mit.edu	37	4	47944130	47944130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:47944130C>T	uc003gxt.3	-	9	751	c.485G>A	c.(484-486)GGA>GAA	p.G162E	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.G231E	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	162	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						ATATGTGTTTCCCGAGGGATC	0.338													21	61					0	0	0.002299	0	0
USP46	64854	broad.mit.edu	37	4	53468187	53468187	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:53468187G>A	uc003gzn.2	-	7	941	c.756C>T	c.(754-756)GCC>GCT	p.A252A	USP46_uc003gzm.3_Silent_p.A245A|USP46_uc011bzr.1_Silent_p.A229A|USP46_uc011bzs.1_Silent_p.A136A	NM_022832	NP_073743	P62068	UBP46_HUMAN	ubiquitin specific peptidase 46 isoform 1	252					behavior|protein deubiquitination|regulation of synaptic transmission, GABAergic|ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(32;0.0295)			TTAGGTGCAGGGCCAAGATCA	0.473													38	71					0	0	0.001706	0	0
KDR	3791	broad.mit.edu	37	4	55955863	55955863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:55955863G>A	uc003has.2	-	24	3601	c.3299C>T	c.(3298-3300)TCC>TTC	p.S1100F	KDR_uc003hat.1_Missense_Mutation_p.S1100F	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1100	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CTTACCTAAGGAAAATATTTC	0.413			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			40	93					0	0	0.002852	0	0
LPHN3	23284	broad.mit.edu	37	4	62598791	62598791	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:62598791G>A	uc010ihh.2	+	5	887	c.714G>A	c.(712-714)AAG>AAA	p.K238K	LPHN3_uc003hcq.3_Silent_p.K238K|LPHN3_uc010ihg.1_Silent_p.K306K|LPHN3_uc003hcs.1_Silent_p.K67K	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	238	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						CTAGGATAAAGAGTGGAGAGG	0.463													6	5					0	0	0.001168	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69094496	69094497	+	Nonsense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:69094496_69094497AC>TT	uc003hdw.3	-	9	1188_1189	c.1052_1053GT>AA	c.(1051-1053)TGT>TAA	p.C351*		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	351	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TAAATCCAGCACATAACATTGT	0.356													18	17					0	0	0.004672	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885482	69885482	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:69885482G>A	uc011cao.1	-	4	643	c.507C>T	c.(505-507)TTC>TTT	p.F169F	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	206					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CCCTCTCCATGAAAGTCATTT	0.363													5	1					0	0	0.000602	0	0
UGT2B7	7364	broad.mit.edu	37	4	69972921	69972921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:69972921C>T	uc003heg.3	+	4	1077	c.1031C>T	c.(1030-1032)CCA>CTA	p.P344L	UGT2B7_uc010ihq.2_Missense_Mutation_p.P344L	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	344					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GGGAATAAACCAGATACCTTA	0.348													23	20					0	0	0.003330	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146513	70146513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:70146513G>A	uc003hej.2	+	1	297	c.295G>A	c.(295-297)GAC>AAC	p.D99N	UGT2B28_uc010ihr.2_Missense_Mutation_p.D99N	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	99					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GAGATGGTCAGACATTCAAAA	0.323													9	17					0	0	0.004482	0	0
ENAM	10117	broad.mit.edu	37	4	71507864	71507864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:71507864G>A	uc011caw.1	+	9	1002	c.721G>A	c.(721-723)GAA>AAA	p.E241K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	241					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			TCCAGGCACAGAACCCACAGC	0.448													62	42					0	0	0.003610	0	0
UTP3	57050	broad.mit.edu	37	4	71555661	71555661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:71555661C>T	uc003hfo.2	+	1	1466	c.1267C>T	c.(1267-1269)CCT>TCT	p.P423S		NM_020368	NP_065101	Q9NQZ2	SAS10_HUMAN	UTP3, small subunit processome component	423					brain development|chromatin modification|gene silencing	nucleolus					0			Lung(101;0.235)			GGGACTTACTCCTAGGAGAAA	0.393													37	40					0	0	0.001287	0	0
ALB	213	broad.mit.edu	37	4	74280794	74280794	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:74280794C>T	uc003hgs.3	+	9	1174	c.1101C>T	c.(1099-1101)GTC>GTT	p.V367V	ALB_uc003hgw.3_Silent_p.V175V|ALB_uc011cbe.1_Silent_p.V46V|ALB_uc003hgt.3_Silent_p.V367V|ALB_uc010iii.2_Silent_p.V252V|ALB_uc003hgu.3_Silent_p.V217V|ALB_uc003hgv.3_Silent_p.V46V|ALB_uc011cbf.1_Silent_p.V257V|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Silent_p.V46V	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	367	Albumin 2.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	ATTACTCTGTCGTGCTGCTGC	0.393													28	28					0	0	0.005443	0	0
ALB	213	broad.mit.edu	37	4	74282062	74282062	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:74282062C>T	uc003hgs.3	+	10	1354	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	ALB_uc003hgw.3_Silent_p.F235F|ALB_uc011cbe.1_Silent_p.F106F|ALB_uc003hgt.3_Silent_p.F427F|ALB_uc010iii.2_Silent_p.F312F|ALB_uc003hgu.3_Silent_p.F277F|ALB_uc003hgv.3_Silent_p.F106F|ALB_uc011cbf.1_Silent_p.F317F|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Silent_p.F106F	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	427	Albumin 3.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	AGTACAAATTCCAGAATGCGT	0.299													11	9					0	0	0.001368	0	0
PARM1	25849	broad.mit.edu	37	4	75937790	75937790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:75937790C>T	uc003hih.1	+	2	439	c.199C>T	c.(199-201)CCA>TCA	p.P67S		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	67	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CTCGGTGCTCCCAGTTACAGC	0.517													27	16					0	0	0.003954	0	0
PPEF2	5470	broad.mit.edu	37	4	76797736	76797736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:76797736C>T	uc003hix.2	-	11	1381	c.1024G>A	c.(1024-1026)GGA>AGA	p.G342R	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.G342R	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	342	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GGGATGGGTCCCTGTGCAGAG	0.542													18	19					0	0	0.000958	0	0
SCARB2	950	broad.mit.edu	37	4	77100829	77100829	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:77100829G>A	uc003hju.1	-	4	792	c.453C>T	c.(451-453)TTC>TTT	p.F151F	SCARB2_uc011cbu.1_Intron	NM_005506	NP_005497	Q14108	SCRB2_HUMAN	scavenger receptor class B, member 2	151	Lumenal (Potential).				cell adhesion|protein targeting to lysosome	integral to plasma membrane|lysosomal lumen|lysosomal membrane|membrane fraction	enzyme binding|receptor activity				0			Lung(101;0.196)			TCTCCCTGAGGAAGTGCACCT	0.502											OREG0016231	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	41					0	0	0.003610	0	0
C4orf22	255119	broad.mit.edu	37	4	81884756	81884756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:81884756G>A	uc003hmf.2	+	6	741	c.692G>A	c.(691-693)AGG>AAG	p.R231K	C4orf22_uc010ijp.2_Missense_Mutation_p.R248K	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	231										skin(2)	2						ATTTCCAGAAGGAAGACTTAA	0.348													6	6					0	0	0.003080	0	0
PTPN13	5783	broad.mit.edu	37	4	87694091	87694091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:87694091C>T	uc003hpz.2	+	32	5809	c.5329C>T	c.(5329-5331)CAC>TAC	p.H1777Y	PTPN13_uc003hpy.2_Missense_Mutation_p.H1782Y|PTPN13_uc003hqa.2_Missense_Mutation_p.H1758Y|PTPN13_uc003hqb.2_Missense_Mutation_p.H1586Y|PTPN13_uc003hqc.1_Missense_Mutation_p.H143Y	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1777						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		CTTGGAAAATCACCTTGAAGA	0.318													16	9					0	0	0.003163	0	0
SLC10A6	345274	broad.mit.edu	37	4	87746604	87746604	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:87746604G>A	uc003hqd.2	-	5	1036	c.888C>T	c.(886-888)TTC>TTT	p.F296F		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	296	Helical; (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		CTATCAGCTGGAAGAGTCCAT	0.448													25	24					0	0	0.003954	0	0
SPARCL1	8404	broad.mit.edu	37	4	88400633	88400633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:88400633C>T	uc010ikm.2	-	11	2487	c.1915G>A	c.(1915-1917)GAT>AAT	p.D639N	SPARCL1_uc011cdc.1_Missense_Mutation_p.D514N|SPARCL1_uc003hqs.3_Missense_Mutation_p.D639N|SPARCL1_uc011cdd.1_Missense_Mutation_p.D514N	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	639	Potential.|EF-hand.				signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		ATGTGCTTATCCTTGTTGGGG	0.483													38	38					0	0	0.001287	0	0
ADH1B	125	broad.mit.edu	37	4	100237445	100237445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:100237445G>A	uc003hus.3	-	4	358	c.274C>T	c.(274-276)CCG>TCG	p.P92S	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.P52S|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Missense_Mutation_p.P52S	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	92					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GTAAAGAGCGGGATGACTTTA	0.373													12	13					0	0	0.002450	0	0
DAPP1	27071	broad.mit.edu	37	4	100738097	100738097	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:100738097G>A	uc003hvf.3	+	1	117	c.27G>A	c.(25-27)GGG>GGA	p.G9G	DAPP1_uc011cek.1_Silent_p.G9G|DAPP1_uc010ilh.2_Silent_p.G9G	NM_014395	NP_055210	Q9UN19	DAPP1_HUMAN	dual adaptor of phosphotyrosine and	9					signal transduction	cytoplasm|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein tyrosine phosphatase activity				0				OV - Ovarian serous cystadenocarcinoma(123;7.04e-09)		TTCTAGAAGGGAAGATGAGCA	0.557													3	3					0	0	0.000602	0	0
TBCK	93627	broad.mit.edu	37	4	107016744	107016744	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:107016744G>A	uc010ilv.2	-	25	2831	c.2466C>T	c.(2464-2466)TTC>TTT	p.F822F	TBCK_uc003hyb.2_Silent_p.F565F|TBCK_uc003hye.2_Silent_p.F783F|TBCK_uc003hyc.2_Silent_p.F759F|TBCK_uc003hyd.2_Silent_p.F650F|TBCK_uc003hyf.2_Silent_p.F822F	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	822	Rhodanese.					intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						CTTCTGCAGTGAAGGCAGCAC	0.463													20	16					0	0	0.001882	0	0
EGF	1950	broad.mit.edu	37	4	110866389	110866389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:110866389C>T	uc003hzy.3	+	5	1350	c.898C>T	c.(898-900)CCA>TCA	p.P300S	EGF_uc011cfu.1_Missense_Mutation_p.P300S|EGF_uc011cfv.1_Missense_Mutation_p.P300S	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	300	Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	AGTAGTGCATCCACTTGCACA	0.478													17	11					0	0	0.006122	0	0
ANK2	287	broad.mit.edu	37	4	114274972	114274972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:114274972C>T	uc003ibe.3	+	38	5298	c.5198C>T	c.(5197-5199)TCA>TTA	p.S1733L	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.S1748L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1700					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AAAGGTAGTTCAGAAGAGTCA	0.408													66	59					0	0	0.003610	0	0
ANK2	287	broad.mit.edu	37	4	114276594	114276594	+	Missense_Mutation	SNP	C	T	T	rs140258681		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:114276594C>T	uc003ibe.3	+	38	6920	c.6820C>T	c.(6820-6822)CGT>TGT	p.R2274C	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.R2289C	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2241					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CACAGAAATTCGTTCAGAAAA	0.478													16	16					0	0	0.003163	0	0
UGT8	7368	broad.mit.edu	37	4	115586864	115586864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:115586864G>A	uc003ibs.2	+	4	1516	c.994G>A	c.(994-996)GGA>AGA	p.G332R	UGT8_uc003ibt.2_Missense_Mutation_p.G332R|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	332					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		AAAGAATCTAGGAAACAACAC	0.343													12	20					0	0	0.001855	0	0
PRDM5	11107	broad.mit.edu	37	4	121631568	121631568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:121631568C>T	uc003idn.2	-	15	1874	c.1624G>A	c.(1624-1626)GAG>AAG	p.E542K	PRDM5_uc003ido.2_Missense_Mutation_p.E511K|PRDM5_uc010ine.2_Missense_Mutation_p.G482E	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	542					histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TACGGCTTCTCCTGCAGTCAA	0.428													6	3					0	0	0.001984	0	0
BBS7	55212	broad.mit.edu	37	4	122774202	122774202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:122774202C>T	uc003ied.2	-	8	932	c.758G>A	c.(757-759)GGG>GAG	p.G253E	BBS7_uc003iee.1_Missense_Mutation_p.G253E	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	253					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						ATCTTTAACCCCATCACCCAC	0.343									Bardet-Biedl_syndrome				18	18					0	0	0.004990	0	0
TRPC3	7222	broad.mit.edu	37	4	122833196	122833196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:122833196G>A	uc003ieg.2	-	5	1468	c.1394C>T	c.(1393-1395)TCT>TTT	p.S465F	TRPC3_uc010inr.2_Missense_Mutation_p.S337F|TRPC3_uc003ief.2_Missense_Mutation_p.S392F|TRPC3_uc011cgl.1_Missense_Mutation_p.S129F	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	380	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GATGATGAAAGAAGCTGCATG	0.448													6	7					0	0	0.001168	0	0
SPATA5	166378	broad.mit.edu	37	4	124235190	124235190	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:124235190C>T	uc003iez.3	+	16	2726	c.2653C>T	c.(2653-2655)CAA>TAA	p.Q885*		NM_145207	NP_660208	Q8NB90	SPAT5_HUMAN	spermatogenesis associated 5	885					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrion	ATP binding|nucleoside-triphosphatase activity				0						TGAAGATTATCAAGAGAAGAG	0.348													24	30					0	0	0.004656	0	0
SPRY1	10252	broad.mit.edu	37	4	124323569	124323569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:124323569C>T	uc003ifa.2	+	2	1011	c.823C>T	c.(823-825)CCT>TCT	p.P275S	SPRY1_uc003ifb.2_Missense_Mutation_p.P275S	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	275	Cys-rich.|SPR.				epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						CTGTTATCCTCCTGCTAAAGG	0.458													25	22					0	0	0.002780	0	0
PET112L	5188	broad.mit.edu	37	4	152593939	152593939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:152593939G>A	uc003iml.2	-	12	1532	c.1520C>T	c.(1519-1521)TCT>TTT	p.S507F	PET112L_uc003imk.2_RNA	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	507						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CTCCATCACAGAGTGGCAGAG	0.597													15	22					0	0	0.000958	0	0
GRIA2	2891	broad.mit.edu	37	4	158257615	158257615	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:158257615G>A	uc003ipm.3	+	11	2019	c.1560G>A	c.(1558-1560)GGG>GGA	p.G520G	GRIA2_uc011cit.1_Silent_p.G473G|GRIA2_uc003ipl.3_Silent_p.G520G|GRIA2_uc003ipk.3_Silent_p.G473G|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	520	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TGAGCCTCGGGATATCTATCA	0.413													5	7					0	0	0.001168	0	0
FNIP2	57600	broad.mit.edu	37	4	159791505	159791505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:159791505C>T	uc003iqe.3	+	14	3016	c.2833C>T	c.(2833-2835)CGC>TGC	p.R945C		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	945					DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		GAACTTTGGCCGCTCACTTCT	0.488													31	25					0	0	0.005524	0	0
NPY5R	4889	broad.mit.edu	37	4	164271826	164271826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:164271826C>T	uc003iqn.2	+	4	583	c.401C>T	c.(400-402)TCA>TTA	p.S134L		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	134	Helical; Name=3; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				ATTTTAATATCAATTGCCATT	0.358													57	71					0	0	0.003610	0	0
ODZ3	55714	broad.mit.edu	37	4	183600989	183600989	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:183600989G>A	uc003ivd.1	+	7	1534	c.1497G>A	c.(1495-1497)GGG>GGA	p.G499G	ODZ3_uc003ive.1_5'Flank	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	499	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATAATGATGGGAAAAATGCAG	0.448													17	10					0	0	0.006122	0	0
FAT1	2195	broad.mit.edu	37	4	187509767	187509767	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr4:187509767G>A	uc003izf.2	-	27	13934	c.13746C>T	c.(13744-13746)TCC>TCT	p.S4582S	FAT1_uc010isn.2_Silent_p.S229S|FAT1_uc003ize.2_Silent_p.S473S	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4582	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGTGCTGCTGGGAATCCAGGG	0.562										HNSCC(5;0.00058)			16	10					0	0	0.000958	0	0
AHRR	57491	broad.mit.edu	37	5	423970	423970	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:423970C>T	uc003jav.2	+	7	642	c.598C>T	c.(598-600)CTG>TTG	p.L200L	AHRR_uc003jaw.2_Silent_p.L196L|AHRR_uc010isy.2_Silent_p.L46L|AHRR_uc010isz.2_Silent_p.L196L|AHRR_uc003jax.2_5'UTR|AHRR_uc003jay.2_Silent_p.L56L	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor	200					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			TGATGCTATCCTGGGGAGGCT	0.652													8	29					0	0	0.003080	0	0
C5orf55	116349	broad.mit.edu	37	5	442795	442795	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:442795A>C	uc010ita.2	-	1	464	c.143T>G	c.(142-144)GTC>GGC	p.V48G	EXOC3_uc003jba.2_5'Flank	NM_138464	NP_612473	Q8N2X6	CE055_HUMAN	hypothetical protein LOC116349 precursor	48						extracellular region					0						GGCAGGTATGACAGACGTTTG	0.597													8	188					0	0	0.003080	0	0
SLC6A18	348932	broad.mit.edu	37	5	1232951	1232951	+	Silent	SNP	C	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:1232951C>G	uc003jby.1	+	3	510	c.387C>G	c.(385-387)TCC>TCG	p.S129S		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	129	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCCTCAACTCCTTCCAGCACC	0.647													21	40					0	0	0.002299	0	0
SRD5A1	6715	broad.mit.edu	37	5	6652030	6652030	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:6652030C>T	uc003jdw.2	+	2	559	c.369C>T	c.(367-369)TTC>TTT	p.F123F	SRD5A1_uc011cml.1_RNA|SRD5A1_uc011cmm.1_Intron	NM_001047	NP_001038	P18405	S5A1_HUMAN	steroid-5-alpha-reductase 1	123	Helical; (Potential).				androgen biosynthetic process|cell differentiation|sex determination|sex differentiation	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|electron carrier activity				0					Dutasteride(DB01126)|Finasteride(DB01216)	CGATTATGTTCTGTACCTGTA	0.448													14	63					0	0	0.006122	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629301	9629301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:9629301G>A	uc003jem.1	-	1	1163	c.844C>T	c.(844-846)CCT>TCT	p.P282S		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	282	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						TTCAATTTAGGATTTCCTAAA	0.363													24	41					0	0	0.003954	0	0
CTNND2	1501	broad.mit.edu	37	5	11364892	11364892	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:11364892G>A	uc003jfa.1	-	8	1433	c.1288C>T	c.(1288-1290)CAG>TAG	p.Q430*	CTNND2_uc010itt.2_Nonsense_Mutation_p.Q339*|CTNND2_uc011cmy.1_Nonsense_Mutation_p.Q93*|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	430	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GGGGGCTTCTGATAGACGCGG	0.617													21	27					0	0	0.002780	0	0
DNAH5	1767	broad.mit.edu	37	5	13719066	13719066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13719066G>A	uc003jfd.2	-	72	12466	c.12424C>T	c.(12424-12426)CTC>TTC	p.L4142F	DNAH5_uc003jfc.2_Missense_Mutation_p.L310F	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4142	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATCTGAAGGAGTGTAATGGGA	0.468									Kartagener_syndrome				9	68					0	0	0.000443	0	0
DNAH5	1767	broad.mit.edu	37	5	13735333	13735333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13735333C>T	uc003jfd.2	-	68	11710	c.11668G>A	c.(11668-11670)GAG>AAG	p.E3890K	DNAH5_uc003jfc.2_Missense_Mutation_p.E58K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3890					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AATTTGTGCTCCTCGTACAGC	0.448									Kartagener_syndrome				8	22					0	0	0.003080	0	0
DNAH5	1767	broad.mit.edu	37	5	13762855	13762855	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13762855T>C	uc003jfd.2	-	60	10299	c.10257A>G	c.(10255-10257)ATA>ATG	p.I3419M	DNAH5_uc003jfc.2_Translation_Start_Site	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3419	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTCTTTGTTTATAGAAAAGA	0.478									Kartagener_syndrome				26	29					0	0	0.001271	0	0
DNAH5	1767	broad.mit.edu	37	5	13788874	13788874	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13788874T>C	uc003jfd.2	-	51	8640	c.8598A>G	c.(8596-8598)GGA>GGG	p.G2866G		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2866					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATGTGTCAATTCCACAATCCA	0.413									Kartagener_syndrome				12	52					0	0	0.002450	0	0
DNAH5	1767	broad.mit.edu	37	5	13794053	13794053	+	Missense_Mutation	SNP	C	T	T	rs147236883	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13794053C>T	uc003jfd.2	-	48	8044	c.8002G>A	c.(8002-8004)GGA>AGA	p.G2668R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2668	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACCTGATCTCCCCACTCATTG	0.308									Kartagener_syndrome				8	14					0	0	0.004482	0	0
DNAH5	1767	broad.mit.edu	37	5	13811768	13811768	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13811768C>T	uc003jfd.2	-	44	7437	c.7395G>A	c.(7393-7395)CTG>CTA	p.L2465L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2465					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAGAGGAATCAGGCCTTGAA	0.403									Kartagener_syndrome				6	48					0	0	0.001984	0	0
DNAH5	1767	broad.mit.edu	37	5	13820480	13820480	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13820480G>A	uc003jfd.2	-	41	6858	c.6816C>T	c.(6814-6816)ATC>ATT	p.I2272I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2272	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAAGGTGTGGATGCAGGTGG	0.552									Kartagener_syndrome				15	22					0	0	0.006122	0	0
DNAH5	1767	broad.mit.edu	37	5	13900349	13900349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13900349C>T	uc003jfd.2	-	15	2267	c.2225G>A	c.(2224-2226)CGA>CAA	p.R742Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	742	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTATCTATCTCGTTTCTGGAA	0.388									Kartagener_syndrome				15	29					0	0	0.004007	0	0
DNAH5	1767	broad.mit.edu	37	5	13901560	13901560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:13901560C>T	uc003jfd.2	-	14	1895	c.1853G>A	c.(1852-1854)CGA>CAA	p.R618Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	618	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGCTGGTTTCGAGCCAGAGG	0.473									Kartagener_syndrome				15	20					0	0	0.003163	0	0
ANKH	56172	broad.mit.edu	37	5	14758692	14758692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:14758692C>T	uc003jfm.3	-	3	660	c.329G>A	c.(328-330)GGA>GAA	p.G110E		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	110	Extracellular (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						AATGTAGTATCCTAAATCACT	0.398													5	69					0	0	0.001168	0	0
CDH12	1010	broad.mit.edu	37	5	21802340	21802340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:21802340G>A	uc010iuc.2	-	7	1650	c.1192C>T	c.(1192-1194)CCG>TCG	p.P398S	CDH12_uc011cno.1_Missense_Mutation_p.P358S|CDH12_uc003jgk.2_Missense_Mutation_p.P398S	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	398	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						GTCCCTACCGGAGTGTCTTCA	0.483										HNSCC(59;0.17)			7	27					0	0	0.004482	0	0
CDH9	1007	broad.mit.edu	37	5	26906948	26906948	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:26906948C>T	uc003jgs.1	-	4	693	c.524_splice	c.e4-1	p.G175_splice	CDH9_uc010iug.2_Splice_Site_p.G175_splice	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein						adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ACAGATGTACCTACATGAAAC	0.378													3	24					0	0	0.004672	0	0
CDH6	1004	broad.mit.edu	37	5	31313499	31313499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:31313499C>T	uc003jhe.1	+	8	1654	c.1328C>T	c.(1327-1329)TCG>TTG	p.S443L	CDH6_uc003jhd.1_Missense_Mutation_p.S443L	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	443	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ATTTTTACATCGAAACTTCTT	0.393													36	53					0	0	0.003755	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33637813	33637813	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:33637813T>G	uc003jia.1	-	12	1920	c.1757A>C	c.(1756-1758)AAA>ACA	p.K586T	ADAMTS12_uc010iuq.1_Missense_Mutation_p.K586T	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	586	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GCGATAGCGTTTTCTTTCTCC	0.448										HNSCC(64;0.19)			4	24					0	0	0.000248	0	0
AGXT2	64902	broad.mit.edu	37	5	34998865	34998865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:34998865G>A	uc003jjf.2	-	14	1583	c.1504C>T	c.(1504-1506)CGT>TGT	p.R502C	AGXT2_uc003jje.1_Missense_Mutation_p.R155C|AGXT2_uc011com.1_Missense_Mutation_p.R427C	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	502					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	AAGGCAGAACGAAATACTTCT	0.378													7	41					0	0	0.001984	0	0
UGT3A1	133688	broad.mit.edu	37	5	35954472	35954472	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:35954472C>T	uc003jjv.1	-	7	1561	c.1404G>A	c.(1402-1404)GCG>GCA	p.A468A	UGT3A1_uc003jjw.1_RNA	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	468	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGAGGTGCGTCGCTCCCCCAG	0.617													10	19					0	0	0.000443	0	0
EGFLAM	133584	broad.mit.edu	37	5	38370509	38370509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:38370509G>A	uc003jlc.1	+	6	981	c.657G>A	c.(655-657)ATG>ATA	p.M219I	EGFLAM_uc003jlb.1_Missense_Mutation_p.M219I	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	219	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TGAGGGCAATGAATTCCCATG	0.562													5	31					0	0	0.001984	0	0
EGFLAM	133584	broad.mit.edu	37	5	38427205	38427205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:38427205G>A	uc003jlc.1	+	14	2229	c.1905G>A	c.(1903-1905)ATG>ATA	p.M635I	EGFLAM_uc003jlb.1_Missense_Mutation_p.M635I|EGFLAM_uc003jle.1_Missense_Mutation_p.M401I|EGFLAM_uc003jlf.1_Missense_Mutation_p.M1I	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	635	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TTTCCTTCATGGAATTTGAGA	0.507													22	90					0	0	0.002299	0	0
C7	730	broad.mit.edu	37	5	40934532	40934532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:40934532G>A	uc003jmh.2	+	4	358	c.244G>A	c.(244-246)GAG>AAG	p.E82K	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	82					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ATGTCCAACAGAGGAGGGATG	0.468													7	54					0	0	0.003080	0	0
SEPP1	6414	broad.mit.edu	37	5	42804856	42804856	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:42804856G>A	uc011cps.1	-	5		c.624C>T			SEPP1_uc011cpt.1_RNA|SEPP1_uc011cpu.1_RNA|SEPP1_uc011cpv.1_RNA|SEPP1_uc003jna.2_RNA			P49908	SEPP1_HUMAN	Homo sapiens cDNA FLJ37321 fis, clone BRAMY2018122.						response to oxidative stress	extracellular region	selenium binding				0						AAACCAAGATGATATACAAGA	0.368													19	19					0	0	0.001216	0	0
NNT	23530	broad.mit.edu	37	5	43650655	43650655	+	Silent	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:43650655T>A	uc003joe.2	+	12	1938	c.1683T>A	c.(1681-1683)GCT>GCA	p.A561A	NNT_uc003jof.2_Silent_p.A561A	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	561	Helical; (Potential).				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	GCCTTGCTGCTCTTGCTGCAT	0.433													20	26					0	0	0.003330	0	0
HCN1	348980	broad.mit.edu	37	5	45353282	45353282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:45353282C>T	uc003jok.2	-	5	1322	c.1297G>A	c.(1297-1299)GAT>AAT	p.D433N		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	433	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TCATAGTAATCATGTATCTTC	0.338													14	16					0	0	0.002450	0	0
EMB	133418	broad.mit.edu	37	5	49706745	49706745	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:49706745C>T	uc003jom.2	-	4	687	c.438G>A	c.(436-438)GAG>GAA	p.E146E	EMB_uc003jol.2_Silent_p.E77E|EMB_uc011cpy.1_Silent_p.E96E|EMB_uc010ivr.2_Silent_p.E92E	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	146	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				GTTCCTTTTCCTCTCGAAAGA	0.303													5	24					0	0	0.001984	0	0
GZMA	3001	broad.mit.edu	37	5	54403633	54403633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:54403633C>T	uc003jpm.2	+	3	264	c.227C>T	c.(226-228)TCC>TTC	p.S76F		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	76	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				AACAAAAGGTCCCAGGTCATT	0.403													13	23					0	0	0.003163	0	0
DHX29	54505	broad.mit.edu	37	5	54557275	54557275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:54557275G>A	uc003jpx.2	-	25	4001	c.3881C>T	c.(3880-3882)CCA>CTA	p.P1294L	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	1294							ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				AAGTAAAACTGGAAAAGGGGT	0.353													19	78					0	0	0.002299	0	0
ELOVL7	79993	broad.mit.edu	37	5	60063651	60063651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:60063651C>T	uc003jsi.3	-	5	535	c.335G>A	c.(334-336)AGG>AAG	p.R112K	ELOVL7_uc011cqo.1_Missense_Mutation_p.R25K|ELOVL7_uc010iwk.2_Missense_Mutation_p.R112K|ELOVL7_uc003jsj.3_Missense_Mutation_p.R99K	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	112					fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				GAAACTTACCCTCAAAGCTGT	0.368													30	39					0	0	0.002445	0	0
ERBB2IP	55914	broad.mit.edu	37	5	65349981	65349981	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:65349981G>A	uc003juk.1	+	21	3143	c.2835G>A	c.(2833-2835)AAG>AAA	p.K945K	ERBB2IP_uc003jui.1_Silent_p.K945K|ERBB2IP_uc003juj.1_Silent_p.K945K|ERBB2IP_uc011cqx.1_Silent_p.K945K|ERBB2IP_uc011cqy.1_Silent_p.K945K|ERBB2IP_uc011cqz.1_Intron|ERBB2IP_uc010iwx.1_Silent_p.K941K|ERBB2IP_uc003jul.1_Silent_p.K941K	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	945					basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		CAATTTTCAAGTTTGATTCAA	0.398													20	28					0	0	0.000958	0	0
OCLN	4950	broad.mit.edu	37	5	68805231	68805231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:68805231C>T	uc003jwu.2	+	3	750	c.314C>T	c.(313-315)CCT>CTT	p.P105L	OCLN_uc003jwv.3_Missense_Mutation_p.P105L	NM_002538	NP_002529			occludin												0		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		GTAGGCTACCCTTATGGAGGA	0.423													58	51					0	0	0.003610	0	0
ZNF366	167465	broad.mit.edu	37	5	71752399	71752399	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:71752399C>T	uc003kce.1	-	3	1542	c.1356G>A	c.(1354-1356)GGG>GGA	p.G452G		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	452	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GCCCACAAATCCCACACTTAT	0.517													12	79					0	0	0.000978	0	0
RGNEF	64283	broad.mit.edu	37	5	73181857	73181857	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:73181857C>T	uc011csq.1	+	24	3249	c.3238C>T	c.(3238-3240)CTG>TTG	p.L1080L	RGNEF_uc003kcx.2_Silent_p.L1080L|RGNEF_uc010izf.2_Silent_p.L1080L|RGNEF_uc011csr.1_Silent_p.L767L|RGNEF_uc003kcz.3_Silent_p.L44L|RGNEF_uc003kda.3_Silent_p.L44L	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	1080					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		GAAGCAGGCACTGATGAGTGA	0.383													21	24					0	0	0.001216	0	0
PDE8B	8622	broad.mit.edu	37	5	76721606	76721606	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:76721606G>A	uc003kfa.2	+	21	2478	c.2433G>A	c.(2431-2433)AAG>AAA	p.K811K	PDE8B_uc003kfb.2_Silent_p.K791K|PDE8B_uc003kfc.2_Silent_p.K756K|PDE8B_uc003kfd.2_Silent_p.K764K|PDE8B_uc003kfe.2_Silent_p.K714K	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	811	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		ATGAAGAGAAGAGACAGGGAC	0.343													16	194					0	0	0.004007	0	0
WDR41	55255	broad.mit.edu	37	5	76729001	76729001	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:76729001G>A	uc003kff.1	-	13	1626	c.1339C>T	c.(1339-1341)CAA>TAA	p.Q447*	WDR41_uc011csy.1_Nonsense_Mutation_p.Q389*|WDR41_uc011csz.1_Nonsense_Mutation_p.Q392*	NM_018268	NP_060738	Q9HAD4	WDR41_HUMAN	WD repeat domain 41	447											0		all_lung(232;0.000961)|Lung NSC(167;0.0011)|Ovarian(174;0.0105)|Prostate(461;0.059)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-50)|Epithelial(54;2.04e-44)|all cancers(79;6.84e-40)		TCTAATTTTTGAAATAATCTT	0.373													15	74					0	0	0.000958	0	0
THBS4	7060	broad.mit.edu	37	5	79363932	79363932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:79363932G>A	uc003kgh.2	+	11	1654	c.1331G>A	c.(1330-1332)GGG>GAG	p.G444E	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	444	EGF-like 4.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		GAGAGGCAGGGGGATGTGACA	0.458													39	45					0	0	0.002522	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79746313	79746313	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:79746313T>A	uc003kgr.3	+	10	3592	c.3290T>A	c.(3289-3291)ATT>AAT	p.I1097N	ZFYVE16_uc003kgp.2_Missense_Mutation_p.I1097N|ZFYVE16_uc003kgq.3_Missense_Mutation_p.I1097N|ZFYVE16_uc003kgs.3_Missense_Mutation_p.I1097N|ZFYVE16_uc003kgt.3_Missense_Mutation_p.I185N	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	1097					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		CAGGCAGAAATTATTATTCTA	0.323													16	79					0	0	0.001216	0	0
HAPLN1	1404	broad.mit.edu	37	5	82948551	82948551	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:82948551G>A	uc003kim.2	-	2	264	c.193C>T	c.(193-195)CGA>TGA	p.R65*	HAPLN1_uc003kin.2_Nonsense_Mutation_p.R65*	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	65	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		GTAGGGTCTCGATAAAATTTA	0.423													24	27					0	0	0.002780	0	0
GPR98	84059	broad.mit.edu	37	5	90015894	90015894	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:90015894G>A	uc003kju.2	+	44	9573	c.9477G>A	c.(9475-9477)ACG>ACA	p.T3159T	GPR98_uc003kjt.2_Silent_p.T865T|GPR98_uc003kjv.2_Silent_p.T759T	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3159	Extracellular (Potential).|Calx-beta 22.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TATTAGACACGGAACCAGAAA	0.363													20	135					0	0	0.005443	0	0
GPR98	84059	broad.mit.edu	37	5	90106233	90106233	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:90106233G>A	uc003kju.2	+	74	15252	c.15156G>A	c.(15154-15156)CTG>CTA	p.L5052L	GPR98_uc003kjt.2_Silent_p.L2758L|GPR98_uc003kjw.2_Silent_p.L713L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5052	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCAAGCCACTGGAAGATTTTG	0.373													14	24					0	0	0.002450	0	0
ARRDC3	57561	broad.mit.edu	37	5	90667261	90667261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:90667261G>A	uc003kjz.2	-	8	1441	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S		NM_020801	NP_065852	Q96B67	ARRD3_HUMAN	arrestin domain containing 3	401					signal transduction	cytoplasm	protein binding			ovary(1)|breast(1)	2		all_cancers(142;2.22e-05)|all_epithelial(76;1.58e-07)|all_lung(232;0.000521)|Lung NSC(167;0.000548)|Ovarian(174;0.0798)|Colorectal(57;0.207)		OV - Ovarian serous cystadenocarcinoma(54;4.56e-30)|Epithelial(54;7.55e-26)|all cancers(79;3.63e-22)		GACTGATCAGGATTTGGATCA	0.398													6	10					0	0	0.001168	0	0
RGMB	285704	broad.mit.edu	37	5	98115297	98115297	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:98115297G>A	uc003knc.2	+	4	675	c.273G>A	c.(271-273)CAG>CAA	p.Q91Q	RGMB_uc003knb.2_Silent_p.Q91Q	NM_001012761	NP_001012779	Q6NW40	RGMB_HUMAN	RGM domain family, member B	50					axon guidance|BMP signaling pathway|cell adhesion|positive regulation of transcription, DNA-dependent	anchored to plasma membrane|ER-Golgi intermediate compartment|membrane raft	identical protein binding				0		all_cancers(142;2.76e-08)|all_epithelial(76;2.98e-11)|all_lung(232;0.000485)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0587)		ACTGCCAACAGCCAGCCCAAT	0.453													30	190					0	0	0.004289	0	0
TSLP	85480	broad.mit.edu	37	5	110407594	110407594	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:110407594C>T	uc003kpb.2	+	1	205	c.6C>T	c.(4-6)TTC>TTT	p.F2F	TSLP_uc003kpa.2_Intron|TSLP_uc010jbt.1_5'Flank	NM_033035	NP_149024	Q969D9	TSLP_HUMAN	thymic stromal lymphopoietin isoform 1	2				MFPFALLYVLS -> MKCLGQSKKEE (in Ref. 3; AAH40592).		extracellular space	cytokine activity				0		all_cancers(142;2.72e-05)|all_epithelial(76;4.39e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0417)|Ovarian(225;0.0443)|Colorectal(57;0.0464)|all_lung(232;0.0507)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.24e-08)|Epithelial(69;1.54e-07)|all cancers(49;1.73e-05)|COAD - Colon adenocarcinoma(37;0.109)		CACGTATGTTCCCTTTTGCCT	0.448													15	64					0	0	0.003163	0	0
STARD4	134429	broad.mit.edu	37	5	110835784	110835784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:110835784C>T	uc003kph.1	-	6	502	c.418G>A	c.(418-420)GAA>AAA	p.E140K	STARD4_uc010jbw.1_Missense_Mutation_p.E42K|STARD4_uc010jbx.1_Missense_Mutation_p.E42K|STARD4_uc003kpi.1_RNA	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	140	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		GGTCTCTTTTCATCCCAGTCA	0.333													12	20					0	0	0.003163	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786322	121786322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:121786322G>A	uc003ksw.1	+	10	1986	c.1780G>A	c.(1780-1782)GGG>AGG	p.G594R	SNCAIP_uc011cwl.1_Missense_Mutation_p.G152R|SNCAIP_uc003ksx.1_Missense_Mutation_p.G641R|SNCAIP_uc003ksy.1_Missense_Mutation_p.G228R|SNCAIP_uc003ksz.1_Missense_Mutation_p.G228R|SNCAIP_uc010jcu.2_Missense_Mutation_p.G190R|SNCAIP_uc011cwm.1_Missense_Mutation_p.G228R|SNCAIP_uc003kta.1_Missense_Mutation_p.G226R|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.G288R|SNCAIP_uc010jcx.1_Missense_Mutation_p.G534R|uc003ktb.1_RNA|SNCAIP_uc003ktc.1_Missense_Mutation_p.G110R	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	594					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AGTCCAAGAGGGGATTCAGGT	0.478													17	69					0	0	0.004990	0	0
ZNF608	57507	broad.mit.edu	37	5	123980094	123980094	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:123980094C>G	uc003ktq.1	-	5	4089	c.3966G>C	c.(3964-3966)TGG>TGC	p.W1322C	ZNF608_uc003ktr.1_RNA|ZNF608_uc003ktp.1_Missense_Mutation_p.W17C	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	1322						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		GAGAGTCCTTCCAGTTCACAG	0.473													23	117					0	0	0.002780	0	0
MEGF10	84466	broad.mit.edu	37	5	126790295	126790295	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:126790295C>T	uc003kuh.3	+	24	3380	c.3018C>T	c.(3016-3018)TCC>TCT	p.S1006S	MEGF10_uc003kui.3_Silent_p.S1006S	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	1006	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		TGGGAAAATCCTTAAAAGGTA	0.323													21	18					0	0	0.003954	0	0
SLC27A6	28965	broad.mit.edu	37	5	128320887	128320887	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:128320887G>A	uc003kuy.2	+	3	939	c.543G>A	c.(541-543)GGG>GGA	p.G181G	SLC27A6_uc003kuz.2_Silent_p.G181G	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	181					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GTGTTTGGGGGATGAAAGATT	0.453													13	17					0	0	0.002450	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128862023	128862023	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:128862023G>A	uc003kvb.1	+	4	942	c.942G>A	c.(940-942)GGG>GGA	p.G314G	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	314					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GTGGAAGAGGGAAACGATATT	0.393													13	17					0	0	0.001368	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130938999	130938999	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:130938999G>A	uc003kvn.1	-	3	368	c.162C>T	c.(160-162)CGC>CGT	p.R54R	RAPGEF6_uc003kvp.1_Silent_p.R104R|RAPGEF6_uc003kvo.1_Silent_p.R54R|RAPGEF6_uc010jdi.1_Silent_p.R54R|RAPGEF6_uc010jdj.1_Silent_p.R54R|RAPGEF6_uc003kvr.2_Silent_p.R54R|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Silent_p.R54R	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	54					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		ATCTCTCATAGCGTGCTCTTG	0.254													7	125					0	0	0.004482	0	0
TGFBI	7045	broad.mit.edu	37	5	135390545	135390545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:135390545C>T	uc003lbf.3	+	10	1566	c.1405C>T	c.(1405-1407)CGT>TGT	p.R469C	TGFBI_uc003lbg.3_Missense_Mutation_p.R202C|TGFBI_uc003lbh.3_Missense_Mutation_p.R295C|TGFBI_uc011cyb.1_Missense_Mutation_p.R295C|TGFBI_uc010jed.2_Missense_Mutation_p.R202C	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	469	FAS1 3.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTTTGTTTATCGTAATGTAAG	0.423													74	111					0	0	0.003610	0	0
TRPC7	57113	broad.mit.edu	37	5	135583383	135583383	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:135583383C>T	uc003lbn.1	-	6	1620	c.1617G>A	c.(1615-1617)TCG>TCA	p.S539S	TRPC7_uc010jef.1_Silent_p.S476S|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.S470S|TRPC7_uc010jei.1_Silent_p.S415S|TRPC7_uc010jej.1_Silent_p.S91S	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	540	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGAGCCCTTCCGATATGATCT	0.522													6	72					0	0	0.001168	0	0
MYOT	9499	broad.mit.edu	37	5	137219247	137219247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:137219247G>A	uc011cye.1	+	7	1008	c.991G>A	c.(991-993)GAA>AAA	p.E331K	MYOT_uc003lbv.2_Missense_Mutation_p.E331K|MYOT_uc011cyg.1_Missense_Mutation_p.E147K|MYOT_uc011cyh.1_Missense_Mutation_p.E216K	NM_001135940	NP_001129412	Q9UBF9	MYOTI_HUMAN	myotilin isoform b	331	Necessary for interaction with ACTA1.|Ig-like C2-type 1.|Necessary for interaction with FLNC.				muscle contraction	actin cytoskeleton|sarcolemma|sarcomere	actin binding|structural constituent of muscle			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TAGAGCAGGAGAAGCCACCTT	0.423													5	46					0	0	0.000602	0	0
PSD2	84249	broad.mit.edu	37	5	139193026	139193026	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:139193026T>G	uc003leu.1	+	3	709	c.504T>G	c.(502-504)GAT>GAG	p.D168E		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	168					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTCACGGATGAGAGCGACA	0.652													19	23					0	0	0.001523	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175015	140175015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140175015G>A	uc003lhd.2	+	1	572	c.466G>A	c.(466-468)GGA>AGA	p.G156R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.G156R|PCDHA2_uc011czy.1_Missense_Mutation_p.G156R	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	156	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTCTAGAGGGAGCATCTGA	0.438													37	58					0	0	0.003271	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207705	140207705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140207705G>A	uc003lho.2	+	1	56	c.29G>A	c.(28-30)GGA>GAA	p.G10E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.G10E|PCDHA6_uc011dab.1_Missense_Mutation_p.G10E	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	10					homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATAGATTGGGAAAGCAATGT	0.512													25	135					0	0	0.001061	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214287	140214287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140214287G>A	uc003lhq.2	+	1	319	c.319G>A	c.(319-321)GAG>AAG	p.E107K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.E107K	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	107	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCCACCTGGAGGTGATCGT	0.552													13	229					0	0	0.000958	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214425	140214425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140214425C>T	uc003lhq.2	+	1	457	c.457C>T	c.(457-459)CCA>TCA	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.P153S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	153	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTCGGTTTCCACTAGAGGG	0.557													30	40					0	0	0.004878	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221031	140221031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140221031G>A	uc003lhs.2	+	1	125	c.125G>A	c.(124-126)GGC>GAC	p.G42D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.G42D	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	42	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCAAACACGGCACCTTCGTG	0.672													10	61					0	0	0.000978	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221363	140221363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140221363C>T	uc003lhs.2	+	1	457	c.457C>T	c.(457-459)CCG>TCG	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P153S	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	153	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTCGGTTTCCGCTAGAGGG	0.478													16	79					0	0	0.003163	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222485	140222485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140222485G>A	uc003lhs.2	+	1	1579	c.1579G>A	c.(1579-1581)GAG>AAG	p.E527K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.E527K	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	527	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCACGAGGAGCTAGAGCT	0.672													11	151					0	0	0.001855	0	0
PCDHA9	9752	broad.mit.edu	37	5	140228399	140228399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140228399G>A	uc003lhu.2	+	1	1043	c.319G>A	c.(319-321)GAG>AAG	p.E107K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.E107K	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	107	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCCACCTGGAGGTGATCGT	0.547													18	137					0	0	0.000958	0	0
PCDHA10	56139	broad.mit.edu	37	5	140236082	140236082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140236082G>A	uc003lhx.2	+	1	449	c.449G>A	c.(448-450)CGA>CAA	p.R150Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.R150Q|PCDHA10_uc011dad.1_Missense_Mutation_p.R150Q	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	150	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTGACTCTCGATTTCCACTA	0.438													20	147					0	0	0.001882	0	0
PCDHA11	56138	broad.mit.edu	37	5	140248880	140248880	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140248880C>T	uc003lia.2	+	1	1050	c.192C>T	c.(190-192)TTC>TTT	p.F64F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.F64F	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	64	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGCCTGTTCCGGGTGGCGT	0.617													21	113					0	0	0.002299	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263823	140263823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140263823C>T	uc003lif.2	+	1	1970	c.1970C>T	c.(1969-1971)CCC>CTC	p.P657L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.P657L|PCDHA13_uc003lid.2_Missense_Mutation_p.P657L	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	657	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACGGTGAGCCCGCGCTGACG	0.692													5	39					0	0	0.001984	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348394	140348394	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140348394G>A	uc003lii.2	+	1	2283	c.2043G>A	c.(2041-2043)GTG>GTA	p.V681V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.V681V	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	681	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGCTGTGGTGGATAGGGTTT	0.473													8	65					0	0	0.000443	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433294	140433295	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140433294_140433295GG>AA	uc003lik.1	+	1	2316_2317	c.2239_2240GG>AA	c.(2239-2241)GGA>AAA	p.G747K		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	747	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAAGGCAATGGATCCTTATCT	0.391													9	79					0	0	0.004672	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474589	140474589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140474589G>A	uc003lil.2	+	1	353	c.215G>A	c.(214-216)GGA>GAA	p.G72E	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	72	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTTCCAAAGGAAAAAAAATG	0.522													11	69					0	0	0.002450	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475968	140475968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140475968C>T	uc003lil.2	+	1	1732	c.1594C>T	c.(1594-1596)CGC>TGC	p.R532C	PCDHB2_uc003lim.1_Missense_Mutation_p.R193C	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	532	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTCGAGTTCCGCGTGGGCGC	0.692													25	44					0	0	0.003330	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501749	140501749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140501749G>A	uc003lip.1	+	1	169	c.169G>A	c.(169-171)GAA>AAA	p.E57K		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	57	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGAATTGGGGAACTGGCCTC	0.557													8	48					0	0	0.000443	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516606	140516606	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140516606G>A	uc003liq.2	+	1	1807	c.1590G>A	c.(1588-1590)GTG>GTA	p.V530V		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	530	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTTCCGCGTGGGAGCCACAG	0.687													22	25					0	0	0.002299	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554513	140554513	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140554513C>T	uc003lit.2	+	1	2271	c.2097C>T	c.(2095-2097)TTC>TTT	p.F699F	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	699	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTCGCTCTTCCTCCTCTCGG	0.706													5	105					0	0	0.001984	0	0
PCDHB9	56127	broad.mit.edu	37	5	140569213	140569213	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140569213C>T	uc003liw.1	+	3	2322	c.2322C>T	c.(2320-2322)CTC>CTT	p.L774L	PCDHB10_uc003lix.2_5'Flank	NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	774	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCCCCACCTCCCGCCCCATA	0.488													57	57					0	0	0.003610	0	0
PCDHB14	56122	broad.mit.edu	37	5	140604707	140604707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140604707G>A	uc003ljb.2	+	1	1630	c.1630G>A	c.(1630-1632)GAG>AAG	p.E544K	PCDHB14_uc011dal.1_Missense_Mutation_p.E391K	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	544	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTGAGCAGCGAGGCGCTGGT	0.687													7	35					0	0	0.001984	0	0
PCDHB18	54660	broad.mit.edu	37	5	140616176	140616176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140616176G>A	uc003ljc.1	+	1	2239	c.1891G>A	c.(1891-1893)GAC>AAC	p.D631N		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GGCCCAGGCCGACTCCCTCAC	0.687													16	66					0	0	0.004990	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626350	140626350	+	Silent	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140626350A>C	uc003lje.2	+	1	1204	c.1204A>C	c.(1204-1206)AGG>CGG	p.R402R		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	402	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAATTTCTACAGGCTGGTAAC	0.463													25	35					0	0	0.003330	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724994	140724994	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140724994A>G	uc003ljm.1	+	1	1394	c.1394A>G	c.(1393-1395)AAC>AGC	p.N465S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.N225S|PCDHGA3_uc011dap.1_Missense_Mutation_p.N465S	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	465	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGAAAACAACCCCAGAGGA	0.522													47	88					0	0	0.003610	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736306	140736306	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140736306C>T	uc003ljq.1	+	1	1539	c.1539C>T	c.(1537-1539)ATC>ATT	p.I513I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Silent_p.I513I	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	513	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATACAGGGATCCTATATGCTC	0.522													55	63					0	0	0.003610	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140746159	140746159	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140746159C>T	uc003lju.1	+	1	2262	c.2262C>T	c.(2260-2262)TCC>TCT	p.S754S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.S754S	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	754	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.S754A(1)		ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACCTATTCCCACGAGGTCT	0.597													20	94					0	0	0.001216	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140857375	140857375	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140857375C>T	uc003lkv.1	+	1	1807	c.1692C>T	c.(1690-1692)GCC>GCT	p.A564A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Silent_p.A564A|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	564	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGACAATGCCCCCCAGGTCC	0.572											OREG0016865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	24					0	0	0.001216	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140865196	140865196	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140865196C>T	uc003lky.1	+	1	456	c.456C>T	c.(454-456)TTC>TTT	p.F152F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Silent_p.F152F	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	152	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACAGCGTTTCCCGTTGGAAA	0.537													15	52					0	0	0.003163	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140866233	140866233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:140866233G>A	uc003lky.1	+	1	1493	c.1493G>A	c.(1492-1494)AGG>AAG	p.R498K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.R498K|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	498	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGAGCCCAGGAATCGAGAT	0.532													30	107					0	0	0.001786	0	0
NDFIP1	80762	broad.mit.edu	37	5	141520143	141520143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:141520143C>T	uc003lmi.3	+	6	727	c.511C>T	c.(511-513)CCT>TCT	p.P171S	NDFIP1_uc003lmj.1_Intron	NM_030571	NP_085048	Q9BT67	NFIP1_HUMAN	Nedd4 family interacting protein 1	171	Cytoplasmic (Potential).				cellular iron ion homeostasis|negative regulation of gene expression|negative regulation of protein transport|negative regulation of transporter activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein ubiquitination	endosome membrane|extracellular region|Golgi membrane|integral to membrane|perinuclear region of cytoplasm	signal transducer activity				0		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCTATTTCCCTGGATATTT	0.323													53	72					0	0	0.003610	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439545	145439545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:145439545G>A	uc003lnt.2	+	9	1910	c.1672G>A	c.(1672-1674)GGG>AGG	p.G558R	SH3RF2_uc011dbl.1_Missense_Mutation_p.G558R|SH3RF2_uc011dbm.1_Missense_Mutation_p.G43R|SH3RF2_uc003lnu.2_Missense_Mutation_p.G49R|SH3RF2_uc011dbn.1_Missense_Mutation_p.G49R|SH3RF2_uc011dbo.1_Missense_Mutation_p.G15R	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	558							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCAGCCACAGGGGATCCCCTC	0.672													12	41					0	0	0.001855	0	0
DPYSL3	1809	broad.mit.edu	37	5	146798162	146798162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:146798162C>T	uc003lon.1	-	3	271	c.161G>A	c.(160-162)GGA>GAA	p.G54E	DPYSL3_uc003loo.2_Missense_Mutation_p.G168E	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	54					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTCTTCACTCCTCCAGGAAC	0.408													33	57					0	0	0.003755	0	0
SPINK5	11005	broad.mit.edu	37	5	147449948	147449948	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:147449948G>A	uc003lox.2	+	3	217	c.144G>A	c.(142-144)AAG>AAA	p.K48K	SPINK5_uc010jgq.1_RNA|SPINK5_uc010jgs.1_Silent_p.K20K|SPINK5_uc010jgr.2_Silent_p.K29K|SPINK5_uc003low.2_Silent_p.K48K|SPINK5_uc003loy.2_Silent_p.K48K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	48	Kazal-like 1; atypical.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCAGGATAAGAAATTTTTTC	0.323													6	7					0	0	0.001984	0	0
SLC26A2	1836	broad.mit.edu	37	5	149360048	149360048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:149360048C>T	uc003lrh.2	+	3	1160	c.892C>T	c.(892-894)CAT>TAT	p.H298Y		NM_000112	NP_000103	P50443	S26A2_HUMAN	solute carrier family 26 member 2	298	Helical; (Potential).					integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CAGAAACATCCATAAGACCAA	0.438													24	43					0	0	0.003954	0	0
SYNPO	11346	broad.mit.edu	37	5	150029242	150029242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:150029242C>T	uc003lsn.2	+	3	2511	c.2137C>T	c.(2137-2139)CCC>TCC	p.P713S	SYNPO_uc003lso.3_Missense_Mutation_p.P469S|SYNPO_uc003lsp.2_Missense_Mutation_p.P469S	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	713					positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAAGCCCAAACCCAACCAGAA	0.642													4	27					0	0	0.000602	0	0
ZNF300	91975	broad.mit.edu	37	5	150277702	150277702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:150277702C>T	uc003lsy.1	-	5	454	c.187G>A	c.(187-189)GGA>AGA	p.G63R	IRGM_uc011dcl.1_Intron	NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	63	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGCTCTTCTCCTTGTTCCAAC	0.388													3	9					0	0	0.004672	0	0
FAT2	2196	broad.mit.edu	37	5	150946298	150946298	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:150946298G>T	uc003lue.3	-	1	2208	c.2195C>A	c.(2194-2196)ACC>AAC	p.T732N	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.T732N	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	732	Extracellular (Potential).|Cadherin 6.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGCCAAGGGGGTGTTGATAGG	0.478													17	113					1.56452e-12	3.07173e-12	0.000958	1	0
GRIA1	2890	broad.mit.edu	37	5	153085398	153085398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:153085398C>T	uc003lva.3	+	11	1959	c.1594C>T	c.(1594-1596)CTT>TTT	p.L532F	GRIA1_uc003luy.3_Missense_Mutation_p.L532F|GRIA1_uc003luz.3_Missense_Mutation_p.L437F|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.L452F|GRIA1_uc011dcx.1_Missense_Mutation_p.L463F|GRIA1_uc011dcy.1_Missense_Mutation_p.L542F|GRIA1_uc011dcz.1_Missense_Mutation_p.L542F|GRIA1_uc010jia.1_Missense_Mutation_p.L512F	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	532	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTTCTCCTTCCTTGATCCTTT	0.438													21	100					0	0	0.002780	0	0
GRIA1	2890	broad.mit.edu	37	5	153149814	153149814	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:153149814G>A	uc003lva.3	+	13	2474	c.2109G>A	c.(2107-2109)GGG>GGA	p.G703G	GRIA1_uc003luy.3_Silent_p.G703G|GRIA1_uc003luz.3_Silent_p.G608G|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.G623G|GRIA1_uc011dcx.1_Silent_p.G634G|GRIA1_uc011dcy.1_Silent_p.G713G|GRIA1_uc011dcz.1_Silent_p.G713G	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	703	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CAGAGGAGGGGATGATTCGAG	0.483													7	26					0	0	0.001984	0	0
KIF4B	285643	broad.mit.edu	37	5	154394675	154394675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:154394675G>A	uc010jih.1	+	1	1416	c.1256G>A	c.(1255-1257)AGG>AAG	p.R419K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	419	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ATGTTGGAGAGGATCATTTTG	0.478													25	124					0	0	0.001271	0	0
SLU7	10569	broad.mit.edu	37	5	159840982	159840982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:159840982G>A	uc003lyg.2	-	4	484	c.329C>T	c.(328-330)TCC>TTC	p.S110F		NM_006425	NP_006416	O95391	SLU7_HUMAN	step II splicing factor SLU7	110					alternative nuclear mRNA splicing, via spliceosome|nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|cytoplasm|nuclear speck|small nuclear ribonucleoprotein complex	pre-mRNA 3'-splice site binding|second spliceosomal transesterification activity|zinc ion binding			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTAATTATGGAATTCTATAA	0.313													7	29					0	0	0.001984	0	0
ODZ2	57451	broad.mit.edu	37	5	167626007	167626007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:167626007C>T	uc010jjd.2	+	16	3023	c.3023C>T	c.(3022-3024)CCC>CTC	p.P1008L	ODZ2_uc003lzr.3_Missense_Mutation_p.P785L|ODZ2_uc003lzt.3_Missense_Mutation_p.P381L|ODZ2_uc010jje.2_Missense_Mutation_p.P279L	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AACTCCATCCCCAGCTGTGAC	0.587													14	12					0	0	0.001855	0	0
ODZ2	57451	broad.mit.edu	37	5	167643915	167643915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:167643915G>A	uc010jjd.2	+	22	4194	c.4194G>A	c.(4192-4194)ATG>ATA	p.M1398I	ODZ2_uc003lzr.3_Missense_Mutation_p.M1168I|ODZ2_uc003lzt.3_Missense_Mutation_p.M771I|ODZ2_uc010jje.2_Missense_Mutation_p.M662I	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		ATTCCAGCATGGATGTAGCCC	0.532													36	45					0	0	0.002222	0	0
CCDC99	54908	broad.mit.edu	37	5	169026118	169026118	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:169026118C>T	uc003mae.3	+	10	1558	c.1279C>T	c.(1279-1281)CTG>TTG	p.L427L	CCDC99_uc010jjj.2_Silent_p.L356L|CCDC99_uc011deq.1_Silent_p.L244L|CCDC99_uc010jjk.2_Silent_p.L153L	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	427	Potential.				cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAATATGAAACTGAGAGCTAA	0.313													13	42					0	0	0.004007	0	0
DOCK2	1794	broad.mit.edu	37	5	169108785	169108785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:169108785G>A	uc003maf.2	+	7	588	c.508G>A	c.(508-510)GGA>AGA	p.G170R	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	170					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGATGAAGACGGAAATATCTT	0.413													9	92					0	0	0.000443	0	0
FOXI1	2299	broad.mit.edu	37	5	169533504	169533504	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:169533504C>T	uc003mai.3	+	1	588	c.543C>T	c.(541-543)TTC>TTT	p.F181F	FOXI1_uc003maj.3_Silent_p.F181F	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	181	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACGACTGCTTCAAGAAGGTGC	0.587									Pendred_syndrome				10	9					0	0	0.002450	0	0
KCNIP1	30820	broad.mit.edu	37	5	170148905	170148905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:170148905G>A	uc003mas.2	+	5	887	c.358G>A	c.(358-360)GAG>AAG	p.E120K	KCNIP1_uc003map.2_Missense_Mutation_p.E118K|KCNIP1_uc003mat.2_Missense_Mutation_p.E109K|KCNIP1_uc010jjp.2_Missense_Mutation_p.E81K|KCNIP1_uc010jjq.2_Missense_Mutation_p.E134K	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	120	EF-hand 2.				detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CGTGAAGTTCGAGGTACGCTC	0.547													8	93					0	0	0.004482	0	0
CDHR2	54825	broad.mit.edu	37	5	175995791	175995791	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:175995791G>A	uc003mem.1	+	4	303	c.237G>A	c.(235-237)GTG>GTA	p.V79V	CDHR2_uc003men.1_Silent_p.V79V	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	79	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CTGGGGAAGTGAAGCTGGCCA	0.627													25	40					0	0	0.001512	0	0
CDHR2	54825	broad.mit.edu	37	5	176017435	176017435	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:176017435G>A	uc003mem.1	+	27	3429	c.3363G>A	c.(3361-3363)CGG>CGA	p.R1121R	CDHR2_uc003men.1_Silent_p.R1121R	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1121	Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GGATGATCCGGAATGATCAGG	0.662													20	32					0	0	0.001882	0	0
TSPAN17	26262	broad.mit.edu	37	5	176078761	176078761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:176078761C>T	uc003met.2	+	3	374	c.145C>T	c.(145-147)CTC>TTC	p.L49F	TSPAN17_uc003mes.3_Intron|TSPAN17_uc003meu.2_Missense_Mutation_p.L49F|TSPAN17_uc003mev.2_Missense_Mutation_p.L49F|TSPAN17_uc003mew.2_Missense_Mutation_p.L49F	NM_012171	NP_036303	Q96FV3	TSN17_HUMAN	transmembrane 4 superfamily member 17 isoform a	49	Extracellular (Potential).					integral to membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0	all_cancers(89;0.00141)|Renal(175;0.000269)|Lung NSC(126;0.00814)|all_lung(126;0.0133)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACAGGGCGTTCTCTCGAACAT	0.632													33	42					0	0	0.004878	0	0
HK3	3101	broad.mit.edu	37	5	176309021	176309021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:176309021C>T	uc003mfa.2	-	16	2253	c.2161G>A	c.(2161-2163)GAT>AAT	p.D721N	HK3_uc003mez.2_Missense_Mutation_p.D277N	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	721	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGAGAGCCATCGTCCCCAAAG	0.642													7	61					0	0	0.001984	0	0
F12	2161	broad.mit.edu	37	5	176829663	176829663	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:176829663T>C	uc003mgo.3	-	13	1617	c.1568A>G	c.(1567-1569)CAG>CGG	p.Q523R	PFN3_uc003mgl.2_5'Flank|F12_uc011dfy.1_Missense_Mutation_p.R54G|F12_uc003mgn.3_Missense_Mutation_p.R54G|F12_uc010jkl.2_RNA	NM_000505	NP_000496	P00748	FA12_HUMAN	coagulation factor XII precursor	523	Peptidase S1.				Factor XII activation|fibrinolysis|innate immune response|positive regulation of blood coagulation|positive regulation of fibrinolysis|positive regulation of plasminogen activation|protein autoprocessing|response to misfolded protein|zymogen activation	extracellular space|plasma membrane	serine-type endopeptidase activity				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAACGGTACCTGCGCCTCCTG	0.662									Hereditary_Angioedema				11	14					0	0	0.001368	0	0
ZNF354B	117608	broad.mit.edu	37	5	178309907	178309907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:178309907C>T	uc003mjl.2	+	5	680	c.454C>T	c.(454-456)CTT>TTT	p.L152F	ZNF354B_uc003mjm.2_Missense_Mutation_p.L152F	NM_058230	NP_478137	Q96LW1	Z354B_HUMAN	zinc finger protein 354B	152					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TACAAAAATCCTTACTGTAGA	0.313													17	31					0	0	0.004990	0	0
ZNF454	285676	broad.mit.edu	37	5	178392033	178392033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:178392033C>T	uc003mjo.1	+	5	899	c.628C>T	c.(628-630)CAT>TAT	p.H210Y	ZNF454_uc010jkz.1_Missense_Mutation_p.H210Y	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TCAGAAAATTCATATTAAGGA	0.358													22	30					0	0	0.001882	0	0
GRM6	2916	broad.mit.edu	37	5	178413358	178413358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:178413358G>A	uc003mjr.2	-	8	2076	c.1897C>T	c.(1897-1899)CTC>TTC	p.L633F	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Missense_Mutation_p.L216F|GRM6_uc003mjs.1_Missense_Mutation_p.L253F	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	633	Helical; Name=2; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GCGTAGATGAGGAAGATGCCG	0.662													15	24					0	0	0.003163	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178540948	178540948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:178540948G>A	uc003mjw.2	-	22	3556	c.3556C>T	c.(3556-3558)CCC>TCC	p.P1186S	uc003mjv.3_5'Flank	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1186					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TTTTCATAGGGGCTCGGTCGT	0.463													71	65					0	0	0.003610	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178553002	178553002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:178553002G>A	uc003mjw.2	-	18	2747	c.2747C>T	c.(2746-2748)CCA>CTA	p.P916L		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	916	TSP type-1 3.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CACTCACACTGGCTGGGAGCA	0.662													14	20					0	0	0.002450	0	0
MAPK9	5601	broad.mit.edu	37	5	179676046	179676046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:179676046C>T	uc003mls.3	-	6	814	c.543G>A	c.(541-543)ATG>ATA	p.M181I	MAPK9_uc003mlt.3_Missense_Mutation_p.M181I|MAPK9_uc010jlc.2_Missense_Mutation_p.M181I|MAPK9_uc003mlv.3_Missense_Mutation_p.M181I|MAPK9_uc011dgx.1_Missense_Mutation_p.M181I	NM_002752	NP_002743	P45984	MK09_HUMAN	mitogen-activated protein kinase 9 isoform JNK2	181	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|protein binding|protein binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)	4	all_cancers(89;6.54e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0236)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGGGGTCATCATGAAGTTAG	0.537													64	95					0	0	0.003610	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166434	180166434	+	Missense_Mutation	SNP	G	A	A	rs141289205		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:180166434G>A	uc003mmf.1	-	1	625	c.625C>T	c.(625-627)CCT>TCT	p.P209S		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGTGCTGCAGGAACAGCCACG	0.522													12	100					0	0	0.001368	0	0
OR2V2	285659	broad.mit.edu	37	5	180582567	180582567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr5:180582567C>T	uc011dhj.1	+	1	625	c.625C>T	c.(625-627)CTC>TTC	p.L209F		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTTCATGCTTCTCTTCCCATT	0.498													23	145					0	0	0.003954	0	0
GMDS	2762	broad.mit.edu	37	6	1742737	1742737	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:1742737G>A	uc003mtq.2	-	8	1045	c.855C>T	c.(853-855)GTC>GTT	p.V285V		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	285					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		ATGATTTCTCGACAAATTCCC	0.463													11	49					0	0	0.000673	0	0
GMDS	2762	broad.mit.edu	37	6	1742793	1742793	+	Missense_Mutation	SNP	C	T	T	rs146652291	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:1742793C>T	uc003mtq.2	-	8	989	c.799G>A	c.(799-801)GAG>AAG	p.E267K		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	267					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		TCCTCCGGCTCATCATTCTGC	0.443													9	59					0	0	0.000978	0	0
SERPINB1	1992	broad.mit.edu	37	6	2838904	2838904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:2838904G>A	uc003mub.2	-	3	229	c.185C>T	c.(184-186)ACG>ATG	p.T62M	SERPINB1_uc003muc.2_Translation_Start_Site	NM_030666	NP_109591	P30740	ILEU_HUMAN	serine (or cysteine) proteinase inhibitor, clade	62					regulation of proteolysis	cytoplasm|extracellular space	serine-type endopeptidase inhibitor activity			breast(4)|ovary(1)	5	Ovarian(93;0.0412)			OV - Ovarian serous cystadenocarcinoma(45;0.0717)		CTCTTCAACCGTGTTGAAATG	0.328													17	61					0	0	0.001216	0	0
BPHL	670	broad.mit.edu	37	6	3129332	3129332	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:3129332C>T	uc003mva.2	+	4	481	c.432C>T	c.(430-432)ACC>ACT	p.T144T	BPHL_uc003muz.2_RNA|BPHL_uc011dht.1_RNA|BPHL_uc003muy.2_Silent_p.T127T	NM_004332	NP_004323	Q86WA6	BPHL_HUMAN	biphenyl hydrolase-like precursor	144					cellular amino acid metabolic process|response to toxin	mitochondrion	hydrolase activity				0	Ovarian(93;0.0386)	all_hematologic(90;0.108)				GGGGCATAACCGCACTCATTG	0.498													38	80					0	0	0.001951	0	0
RREB1	6239	broad.mit.edu	37	6	7211126	7211126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:7211126G>A	uc003mxc.2	+	7	905	c.515G>A	c.(514-516)AGG>AAG	p.R172K	RREB1_uc010jnw.2_Missense_Mutation_p.R172K|RREB1_uc003mxb.2_Missense_Mutation_p.R172K|RREB1_uc010jnx.2_Missense_Mutation_p.R172K|RREB1_uc003mxd.2_Missense_Mutation_p.R172K	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	172					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				TCCTCCAAGAGGAAACTGAGT	0.522													19	90					0	0	0.001523	0	0
CAGE1	285782	broad.mit.edu	37	6	7374301	7374301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:7374301C>T	uc003mxi.2	-	4	1064	c.343G>A	c.(343-345)GAA>AAA	p.E115K	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.E6K|CAGE1_uc003mxk.1_Missense_Mutation_p.E6K	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	251											0	Ovarian(93;0.0418)					ACTTCCTTTTCATAACTGACT	0.408													38	157					0	0	0.001706	0	0
DSP	1832	broad.mit.edu	37	6	7580111	7580111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:7580111G>A	uc003mxp.1	+	23	3967	c.3688G>A	c.(3688-3690)GAT>AAT	p.D1230N	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1230	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCAAAAAGAGGATGATTCCAA	0.378													15	44					0	0	0.004990	0	0
DSP	1832	broad.mit.edu	37	6	7583091	7583091	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:7583091C>T	uc003mxp.1	+	24	5875	c.5596C>T	c.(5596-5598)CAG>TAG	p.Q1866*	DSP_uc003mxq.1_Nonsense_Mutation_p.Q1267*	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1866	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGACCTGAATCAGTGGAAGAC	0.453													9	61					0	0	0.004482	0	0
TFAP2A	7020	broad.mit.edu	37	6	10419659	10419659	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:10419659C>A	uc003myt.2	-	1	139	c.25G>T	c.(25-27)GAC>TAC	p.D9Y	TFAP2A_uc011dii.1_Missense_Mutation_p.D9Y	NM_001042425	NP_001035890	P05549	AP2A_HUMAN	transcription factor AP-2 alpha isoform c	13					ectoderm development|positive regulation of bone mineralization|positive regulation of tooth mineralization|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	centrosome|Golgi apparatus|nucleus	chromatin binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.0991)	all_hematologic(90;0.107)				ACCTGCCAGTCCCCCATTTTG	0.697													28	33					2.20262e-25	4.36004e-25	0.002836	1	0
HIVEP1	3096	broad.mit.edu	37	6	12123120	12123120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:12123120G>A	uc003nac.2	+	4	3271	c.3092G>A	c.(3091-3093)AGG>AAG	p.R1031K	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1031					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ATAAGAAAAAGGAGGAAAATG	0.498													44	78					0	0	0.003214	0	0
ATXN1	6310	broad.mit.edu	37	6	16327052	16327052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:16327052G>A	uc003nbt.2	-	8	2461	c.1490C>T	c.(1489-1491)ACT>ATT	p.T497I	ATXN1_uc010jpi.2_Missense_Mutation_p.T497I|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	497	Self-association.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				TTCCATGTCAGTGCTGCCGAC	0.662													70	77					0	0	0.003610	0	0
ATXN1	6310	broad.mit.edu	37	6	16328278	16328278	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:16328278G>A	uc003nbt.2	-	8	1235	c.264C>T	c.(262-264)TCC>TCT	p.S88S	ATXN1_uc010jpi.2_Silent_p.S88S|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	88					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CGCTGGGCGGGGAGTAGTCCA	0.677													34	53					0	0	0.003755	0	0
KIF13A	63971	broad.mit.edu	37	6	17772153	17772153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:17772153G>A	uc003ncg.3	-	37	4567	c.4462C>T	c.(4462-4464)CTT>TTT	p.L1488F	KIF13A_uc003ncf.2_Missense_Mutation_p.L1475F|KIF13A_uc003nch.3_Missense_Mutation_p.L1488F|KIF13A_uc003nci.3_Missense_Mutation_p.L1475F|KIF13A_uc003nce.1_Missense_Mutation_p.L74F	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1488					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TGGCTTAGAAGAGGCCTTGCT	0.458													110	152					0	0	0.003610	0	0
NRSN1	140767	broad.mit.edu	37	6	24146112	24146112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:24146112G>A	uc010jpq.1	+	4	763	c.526G>A	c.(526-528)GAA>AAA	p.E176K		NM_080723	NP_542454	Q8IZ57	NRSN1_HUMAN	neurensin 1	176					nervous system development	growth cone|integral to membrane|neuronal cell body|transport vesicle					0						AGGGCCAGGGGAAACAAAGAT	0.473													18	46					0	0	0.001216	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24533825	24533825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:24533825C>T	uc003neg.2	+	10	1521	c.1493C>T	c.(1492-1494)TCC>TTC	p.S498F	ALDH5A1_uc003nef.2_Missense_Mutation_p.S511F	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	498		Substrate.		S->A: Reduces catalytic activity to less than 15% of wild-type.	acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	GGATTAATTTCCTCTGTGGAG	0.517													36	117					0	0	0.001485	0	0
ZNF165	7718	broad.mit.edu	37	6	28056771	28056771	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:28056771G>A	uc003nkg.2	+	5	2065	c.981G>A	c.(979-981)AAG>AAA	p.K327K	ZNF165_uc003nkh.2_Silent_p.K327K|ZNF165_uc003nki.3_Silent_p.K327K|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	327					viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AATCTTTCAAGAGCCCAAAAC	0.368													15	31					0	0	0.002450	0	0
SCAND3	114821	broad.mit.edu	37	6	28543259	28543259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:28543259G>A	uc003nlo.2	-	3	1841	c.1223C>T	c.(1222-1224)TCA>TTA	p.S408L		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	408	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGACTTTAATGACCGCAAAAA	0.378													14	28					0	0	0.001855	0	0
HCG4	54435	broad.mit.edu	37	6	29760053	29760053	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:29760053G>A	uc003nns.2	-	1		c.798C>T			uc010jrm.1_Silent_p.G54G|uc003nnt.2_Missense_Mutation_p.G90E|uc011dma.1_5'Flank	NR_002139				Homo sapiens clone HCG IV.9 unknown mRNA.												0						CTGCTCTCGGGGGCCCTGGTC	0.692													4	17					0	0	0.001984	0	0
PPP1R10	5514	broad.mit.edu	37	6	30571928	30571928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:30571928C>T	uc003nqn.1	-	14	1917	c.1365G>A	c.(1363-1365)ATG>ATA	p.M455I	PPP1R10_uc010jsc.1_Missense_Mutation_p.M109I	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	455	Interaction with WDR82 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						CCTTCTCCTCCATGTTATCAT	0.557													57	94					0	0	0.003610	0	0
HLA-B	3106	broad.mit.edu	37	6	31322884	31322884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:31322884C>T	uc003nth.2	-	5	1066	c.1012G>A	c.(1012-1014)GGT>AGT	p.G338S	HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_RNA|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Missense_Mutation_p.G217S|HLA-B_uc003nti.1_Intron	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	338	Cytoplasmic (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						CCTTCCCTACCTGAACTCTTC	0.582									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				15	34					0	0	0.006122	0	0
CFB	629	broad.mit.edu	37	6	31918076	31918076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:31918076G>A	uc003nyj.3	+	12	1798	c.1520G>A	c.(1519-1521)GGA>GAA	p.G507E	CFB_uc011dor.1_Missense_Mutation_p.G1009E|CFB_uc003nyi.2_Missense_Mutation_p.G507E	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	507	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CCTTCAAAGGGACACGAGAGC	0.493													63	264					0	0	0.003610	0	0
STK19	8859	broad.mit.edu	37	6	31939975	31939975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:31939975C>T	uc003nyv.2	+	1	330	c.202C>T	c.(202-204)CCT>TCT	p.P68S	DOM3Z_uc003nyo.1_5'UTR|DOM3Z_uc003nyp.1_5'UTR|DOM3Z_uc003nyq.1_5'UTR|DOM3Z_uc003nyr.1_5'UTR|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'UTR|STK19_uc003nyt.2_5'UTR|DOM3Z_uc003nyu.1_5'UTR|STK19_uc011dow.1_Missense_Mutation_p.P68S|STK19_uc011dox.1_5'UTR|STK19_uc003nyw.2_Missense_Mutation_p.P68S|STK19_uc010jtn.1_5'Flank	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	68						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						TGGGGCCCGGCCTGGCGGAGG	0.706													8	19					0	0	0.003080	0	0
STK19	8859	broad.mit.edu	37	6	31940120	31940120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:31940120G>A	uc003nyv.2	+	2	390	c.262G>A	c.(262-264)GAA>AAA	p.E88K	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.E45K|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.E88K|STK19_uc011dox.1_Missense_Mutation_p.E45K|STK19_uc003nyw.2_Missense_Mutation_p.E88K|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	88						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						CTCTGCGCCGGAAGACCCTAT	0.582													16	64					0	0	0.006122	0	0
TNXB	7148	broad.mit.edu	37	6	32065145	32065145	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:32065145C>T	uc003nzl.2	-	3	687	c.485G>A	c.(484-486)TGG>TAG	p.W162*		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	162	EGF-like 1; incomplete.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGCCCACCCCAGCCTGGCTC	0.617													67	252					0	0	0.003610	0	0
NOTCH4	4855	broad.mit.edu	37	6	32190494	32190494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:32190494G>A	uc003obb.2	-	3	384	c.245C>T	c.(244-246)GCC>GTC	p.A82V	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.A82V	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	82	Extracellular (Potential).|EGF-like 2.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GGGAAGCAGGGCTTGGCAGCT	0.637													18	434					0	0	0.000958	0	0
KIFC1	3833	broad.mit.edu	37	6	33365810	33365810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:33365810C>T	uc003oef.3	+	2	467	c.17C>T	c.(16-18)TCC>TTC	p.S6F	KIFC1_uc011drf.1_Missense_Mutation_p.S6F|uc011drg.1_5'Flank	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	6					blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						CAACAGAGGTCCCCCCTATTG	0.522													36	57					0	0	0.001485	0	0
GRM4	2914	broad.mit.edu	37	6	34101214	34101214	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:34101214G>A	uc003oir.3	-	1	230	c.60C>T	c.(58-60)CTC>CTT	p.L20L	GRM4_uc011dsn.1_Silent_p.L20L|GRM4_uc010jvh.2_Silent_p.L20L|GRM4_uc010jvi.2_5'UTR|GRM4_uc010jvk.1_Intron	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	20					activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CGTAAAGGCTGAGGAGCAGGC	0.622													18	28					0	0	0.000958	0	0
TCP11	6954	broad.mit.edu	37	6	35086086	35086086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:35086086G>A	uc003okd.2	-	10	1692	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F	TCP11_uc003ojz.1_Missense_Mutation_p.S429F|TCP11_uc003oka.2_Missense_Mutation_p.S429F|TCP11_uc003okb.2_Missense_Mutation_p.S428F|TCP11_uc003okc.2_Missense_Mutation_p.S428F|TCP11_uc011dsu.1_Missense_Mutation_p.S486F|TCP11_uc011dsv.1_Missense_Mutation_p.S453F|TCP11_uc011dsw.1_Missense_Mutation_p.S458F	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	491					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						CTGGGCTGGGGAAATGAGGGT	0.512													31	132					0	0	0.004289	0	0
SRPK1	6732	broad.mit.edu	37	6	35838079	35838079	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:35838079T>C	uc003olj.2	-	10	1093	c.970A>G	c.(970-972)AAA>GAA	p.K324E	SRPK1_uc011dtg.1_Missense_Mutation_p.K308E|SRPK1_uc003olh.2_Missense_Mutation_p.K217E|SRPK1_uc003oli.2_Missense_Mutation_p.K217E	NM_003137	NP_003128	Q96SB4	SRPK1_HUMAN	SFRS protein kinase 1	324	Protein kinase.				cell differentiation|chromosome segregation|interspecies interaction between organisms|intracellular protein kinase cascade|mRNA processing|negative regulation of viral genome replication|positive regulation of viral genome replication|regulation of mRNA processing|RNA splicing	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						TGGGTCATTTTATTAGGTGGG	0.368													16	22					0	0	0.001216	0	0
MAPK13	5603	broad.mit.edu	37	6	36106731	36106731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:36106731C>T	uc003ols.2	+	11	1015	c.917C>T	c.(916-918)CCC>CTC	p.P306L	MAPK13_uc003olt.2_RNA	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13	306	Protein kinase.				cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						CTCACCCATCCCTTCTTTGAA	0.597													18	31					0	0	0.000958	0	0
MDGA1	266727	broad.mit.edu	37	6	37623535	37623535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:37623535C>T	uc003onu.1	-	4	1699	c.520G>A	c.(520-522)GAT>AAT	p.D174N		NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	174	Ig-like 2.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						GATAGGGTATCGGAACCCCGC	0.587													5	13					0	0	0.001984	0	0
BTBD9	114781	broad.mit.edu	37	6	38565854	38565854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:38565854G>A	uc003ooa.3	-	3	593	c.17C>T	c.(16-18)CCT>CTT	p.P6L	BTBD9_uc003ony.3_5'Flank|BTBD9_uc010jwv.2_5'Flank|BTBD9_uc010jww.2_5'Flank|BTBD9_uc010jwx.2_Missense_Mutation_p.P6L	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	6					cell adhesion						0						GGGGCGAAGAGGGTGGCTGTT	0.438													17	62					0	0	0.000958	0	0
DNAH8	1769	broad.mit.edu	37	6	38749134	38749134	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:38749134C>T	uc003ooe.1	+	14	2193	c.1593C>T	c.(1591-1593)CCC>CCT	p.P531P		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAAGTGAGCCCATCAATTATT	0.373													8	29					0	0	0.000443	0	0
DNAH8	1769	broad.mit.edu	37	6	38816444	38816444	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:38816444A>T	uc003ooe.1	+	35	5015	c.4415A>T	c.(4414-4416)AAA>ATA	p.K1472I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCATTTAAAAAAAATATCCAG	0.343													4	17					0	0	0.000602	0	0
DNAH8	1769	broad.mit.edu	37	6	38830154	38830154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:38830154G>A	uc003ooe.1	+	42	6179	c.5579G>A	c.(5578-5580)GGA>GAA	p.G1860E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAAGACATGGGAAGGTGTTTG	0.463													42	68					0	0	0.002852	0	0
DNAH8	1769	broad.mit.edu	37	6	38854674	38854674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:38854674G>A	uc003ooe.1	+	55	8316	c.7716G>A	c.(7714-7716)ATG>ATA	p.M2572I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAGCAGCAATGATCCACCCTG	0.398													32	35					0	0	0.002445	0	0
DNAH8	1769	broad.mit.edu	37	6	38881675	38881675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:38881675G>A	uc003ooe.1	+	65	9859	c.9259G>A	c.(9259-9261)GAT>AAT	p.D3087N	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACTCTCTCAGGATCTTGCAGT	0.373													8	17					0	0	0.000443	0	0
DNAH8	1769	broad.mit.edu	37	6	38905789	38905789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:38905789G>A	uc003ooe.1	+	76	11552	c.10952G>A	c.(10951-10953)CGA>CAA	p.R3651Q	DNAH8_uc003oog.1_Missense_Mutation_p.R100Q|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGTGTACTTCGAACTACCAAG	0.473													30	58					0	0	0.001786	0	0
KIF6	221458	broad.mit.edu	37	6	39513388	39513388	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:39513388T>C	uc003oot.2	-	11	1353	c.1258A>G	c.(1258-1260)AAA>GAA	p.K420E	KIF6_uc010jxa.1_Missense_Mutation_p.K211E|KIF6_uc011dua.1_Missense_Mutation_p.K420E|KIF6_uc010jxb.1_Missense_Mutation_p.K420E	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	420					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						TGATGAACTTTACGCATATCC	0.348													29	30					0	0	0.003755	0	0
MOCS1	4337	broad.mit.edu	37	6	39881527	39881527	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:39881527G>A	uc003opb.2	-	4	774	c.636C>T	c.(634-636)AAC>AAT	p.N212N	MOCS1_uc003opa.2_Silent_p.N212N|MOCS1_uc003opc.2_Silent_p.N212N|MOCS1_uc003opd.2_Silent_p.N212N|MOCS1_uc003ope.2_Silent_p.N125N	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	212	Molybdenum cofactor biosynthesis protein A.				Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					CCTTCACAGGGTTGTAGCCCA	0.612													28	49					0	0	0.002836	0	0
NCR2	9436	broad.mit.edu	37	6	41304152	41304152	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:41304152T>A	uc003oqh.2	+	2	467	c.380T>A	c.(379-381)CTG>CAG	p.L127Q	NCR2_uc003oqi.2_Missense_Mutation_p.L127Q|NCR2_uc003oqj.2_Missense_Mutation_p.L127Q	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2	127	Extracellular (Potential).				cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					AGATTCTATCTGGTGGTATCT	0.532													23	35					0	0	0.004656	0	0
KLC4	89953	broad.mit.edu	37	6	43040994	43040994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:43040994C>T	uc003otv.1	+	14	1740	c.1663C>T	c.(1663-1665)CTT>TTT	p.L555F	KLC4_uc003otr.1_RNA|KLC4_uc011dvd.1_Missense_Mutation_p.L478F|KLC4_uc003otw.1_Missense_Mutation_p.L573F|KLC4_uc003otx.1_Missense_Mutation_p.L555F|KLC4_uc003oty.1_Missense_Mutation_p.L555F|KLC4_uc003otz.1_Missense_Mutation_p.L555F	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	555						cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			GAGTGGCTCTCTTGGCAAGAT	0.557													7	33					0	0	0.000443	0	0
TTBK1	84630	broad.mit.edu	37	6	43214429	43214429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:43214429G>A	uc003ouq.1	+	2	310	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	11						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CCTTAAGGACGAAACCAACAT	0.667													21	18					0	0	0.002780	0	0
TTBK1	84630	broad.mit.edu	37	6	43225648	43225648	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:43225648C>T	uc003ouq.1	+	10	1239	c.960C>T	c.(958-960)TCC>TCT	p.S320S		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	320						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CCCTCCTGTCCACGAGCACCT	0.602													16	51					0	0	0.004990	0	0
ZNF318	24149	broad.mit.edu	37	6	43324955	43324955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:43324955G>A	uc003oux.2	-	3	1175	c.1097C>T	c.(1096-1098)TCT>TTT	p.S366F	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	366					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CCGATGCAAAGAATATCCTGG	0.512													13	53					0	0	0.001368	0	0
TJAP1	93643	broad.mit.edu	37	6	43472807	43472807	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:43472807T>C	uc003ovd.2	+	11	1264	c.888T>C	c.(886-888)ACT>ACC	p.T296T	TJAP1_uc003ovf.2_Silent_p.T286T|TJAP1_uc003ove.2_Silent_p.T286T|TJAP1_uc003ovc.2_Silent_p.T286T|TJAP1_uc010jyp.2_Silent_p.T255T|TJAP1_uc011dvh.1_Silent_p.T286T|TJAP1_uc003ovg.2_Silent_p.T162T|TJAP1_uc011dvi.1_Silent_p.T296T|TJAP1_uc011dvj.1_Silent_p.T96T|TJAP1_uc003ovi.2_Silent_p.T162T	NM_001146016	NP_001139488	Q5JTD0	TJAP1_HUMAN	tight junction associated protein 1 isoform a	296	Pro-rich.					Golgi apparatus|tight junction	protein binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0122)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CTCTGGGTACTGCCAGGGGCT	0.652													18	19					0	0	0.000958	0	0
GTPBP2	54676	broad.mit.edu	37	6	43596721	43596721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:43596721G>A	uc003ovs.2	-	1	216	c.179C>T	c.(178-180)CCC>CTC	p.P60L	GTPBP2_uc010jyv.2_5'Flank|GTPBP2_uc003ovt.1_Missense_Mutation_p.P60L|MAD2L1BP_uc003ovu.2_5'Flank	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	60							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			CACCTCGGGGGGCAAATACGG	0.622													4	21					0	0	0.001168	0	0
GPR116	221395	broad.mit.edu	37	6	46827023	46827023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:46827023G>A	uc003oyo.3	-	17	2906	c.2617C>T	c.(2617-2619)CCA>TCA	p.P873S	GPR116_uc011dwj.1_Missense_Mutation_p.P428S|GPR116_uc011dwk.1_Missense_Mutation_p.P302S|GPR116_uc003oyp.3_Missense_Mutation_p.P731S|GPR116_uc003oyq.3_Missense_Mutation_p.P873S|GPR116_uc010jzi.1_Missense_Mutation_p.P545S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	873	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TCAAAGTATGGGAAAACAAAC	0.463													15	44					0	0	0.004007	0	0
CRISP2	7180	broad.mit.edu	37	6	49676848	49676848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:49676848C>T	uc003ozq.2	-	4	318	c.62G>A	c.(61-63)GGA>GAA	p.G21E	CRISP2_uc003ozl.2_Missense_Mutation_p.G21E|CRISP2_uc003ozn.2_Missense_Mutation_p.G21E|CRISP2_uc003ozr.2_Missense_Mutation_p.G21E|CRISP2_uc003ozo.2_Missense_Mutation_p.G21E|CRISP2_uc003ozm.2_Missense_Mutation_p.G21E|CRISP2_uc003ozp.2_Missense_Mutation_p.G21E	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	21						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			CCTTACCTTTCCTTCTGCAGG	0.413													7	34					0	0	0.003080	0	0
DEFB110	245913	broad.mit.edu	37	6	49989596	49989596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:49989596G>A	uc003pac.2	-	1	99	c.53C>T	c.(52-54)CCA>CTA	p.P18L	DEFB110_uc011dwr.1_Missense_Mutation_p.P18L	NM_001037497	NP_001032586	Q30KQ9	DB110_HUMAN	beta-defensin 110 isoform a	18					defense response to bacterium	extracellular region				ovary(1)	1	Lung NSC(77;0.042)					CATATTACCTGGTAAAATTGT	0.303													6	21					0	0	0.001168	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039539	55039539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:55039539G>A	uc003pcl.2	+	1	469	c.154G>A	c.(154-156)GAA>AAA	p.E52K	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	52	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCACCCGAAAGAATATGAGTG	0.557													9	62					0	0	0.004482	0	0
HCRTR2	3062	broad.mit.edu	37	6	55120098	55120098	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:55120098C>T	uc003pcl.2	+	3	882	c.567C>T	c.(565-567)ATC>ATT	p.I189I	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Silent_p.I124I	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	189	Helical; Name=4; (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CTCAGGCCATCGTCATGGAGT	0.502													9	23					0	0	0.004482	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904392	73904392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:73904392C>T	uc003pgk.2	+	14	2401	c.2054C>T	c.(2053-2055)TCG>TTG	p.S685L	KCNQ5_uc011dyh.1_Missense_Mutation_p.S704L|KCNQ5_uc011dyi.1_Missense_Mutation_p.S695L|KCNQ5_uc010kat.2_Missense_Mutation_p.S676L|KCNQ5_uc011dyj.1_Missense_Mutation_p.S575L|KCNQ5_uc011dyk.1_Missense_Mutation_p.S435L	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	685					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GCCAACATCTCGAGAGGCCTG	0.488													53	73					0	0	0.003610	0	0
KHDC1	80759	broad.mit.edu	37	6	73919663	73919663	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:73919663G>A	uc011dyl.1	-	8		c.1430C>T						Q4VXA5	KHDC1_HUMAN	Homo sapiens cDNA FLJ30329 fis, clone BRACE2007201.							integral to membrane	RNA binding			skin(1)	1						AGGGGATGTGGGCAAAGGCCA	0.498													8	9					0	0	0.003080	0	0
DPPA5	340168	broad.mit.edu	37	6	74063871	74063871	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:74063871G>T	uc003pgs.1	-	1	83	c.78C>A	c.(76-78)TTC>TTA	p.F26L		NM_001025290	NP_001020461	A6NC42	DPPA5_HUMAN	developmental pluripotency associated 5	26	KH; atypical.				multicellular organismal development	cytoplasm	RNA binding				0						TCTGGACCTGGAACACCTCTG	0.602													14	35					3.41278e-10	6.68542e-10	0.004990	1	0
C6orf221	154288	broad.mit.edu	37	6	74072857	74072857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:74072857C>T	uc003pgt.3	+	2	262	c.209C>T	c.(208-210)TCC>TTC	p.S70F		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	70	KH; atypical.									skin(2)	2						CAGGGTATGTCCCAAATCTTG	0.592													47	45					0	0	0.003610	0	0
COL12A1	1303	broad.mit.edu	37	6	75797404	75797404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:75797404C>T	uc003phs.2	-	65	9236	c.9070G>A	c.(9070-9072)GGC>AGC	p.G3024S	COL12A1_uc003pht.2_Missense_Mutation_p.G1860S	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	3024	Triple-helical region (COL1) with 2 imperfections.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CCAGGGGGGCCAGGGGGACCT	0.542													44	70					0	0	0.003610	0	0
FILIP1	27145	broad.mit.edu	37	6	76022573	76022573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:76022573G>A	uc003pia.2	-	5	3348	c.2975C>T	c.(2974-2976)CCA>CTA	p.P992L	FILIP1_uc003phy.1_Missense_Mutation_p.P992L|FILIP1_uc003phz.2_Missense_Mutation_p.P893L|FILIP1_uc010kbe.2_Missense_Mutation_p.P995L|FILIP1_uc003pib.1_Missense_Mutation_p.P744L	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	992										skin(3)|ovary(1)	4						TCCACTTTCTGGAGTCTTCTC	0.473													18	63					0	0	0.001523	0	0
DOPEY1	23033	broad.mit.edu	37	6	83846981	83846981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:83846981C>T	uc003pjs.1	+	21	3480	c.3220C>T	c.(3220-3222)CCA>TCA	p.P1074S	DOPEY1_uc011dyy.1_Missense_Mutation_p.P1065S|DOPEY1_uc010kbl.1_Missense_Mutation_p.P1065S|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	1074					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		CACTGTGAATCCATTAAGTGA	0.388													5	16					0	0	0.000602	0	0
ME1	4199	broad.mit.edu	37	6	83947495	83947495	+	Missense_Mutation	SNP	G	A	A	rs142932433		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:83947495G>A	uc003pjy.2	-	9	1073	c.967C>T	c.(967-969)CCA>TCA	p.P323S	ME1_uc011dzb.1_Missense_Mutation_p.P248S|ME1_uc011dzc.1_Missense_Mutation_p.P157S	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	323					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TTCTCTTTTGGTAAACCTTCT	0.338													13	20					0	0	0.006122	0	0
SNAP91	9892	broad.mit.edu	37	6	84284828	84284828	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:84284828C>T	uc011dze.1	-	25	2660	c.2343G>A	c.(2341-2343)CAG>CAA	p.Q781Q	SNAP91_uc011dzd.1_Silent_p.Q279Q|SNAP91_uc003pkb.2_Silent_p.Q690Q|SNAP91_uc003pkc.2_Silent_p.Q751Q|SNAP91_uc003pkd.2_Silent_p.Q474Q|SNAP91_uc003pka.2_Silent_p.Q779Q	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	781					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		CAGCATTCCACTGAAGATCTC	0.428													4	9					0	0	0.000248	0	0
HTR1E	3354	broad.mit.edu	37	6	87725313	87725313	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:87725313C>T	uc003pli.2	+	2	964	c.261C>T	c.(259-261)CGC>CGT	p.R87R		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	87	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	TCATGGATCGCTGGAAGCTTG	0.567													59	55					0	0	0.003610	0	0
C6orf165	154313	broad.mit.edu	37	6	88173910	88173910	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:88173910A>G	uc003plv.2	+	13	1903	c.1811A>G	c.(1810-1812)AAG>AGG	p.K604R	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Missense_Mutation_p.K416R|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	604										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		CGTGGAGGAAAGAGCGAAATC	0.463													6	28					0	0	0.001984	0	0
MDN1	23195	broad.mit.edu	37	6	90387356	90387356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:90387356G>A	uc003pnn.1	-	76	12588	c.12472C>T	c.(12472-12474)CAT>TAT	p.H4158Y		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4158					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GGGTGAAGATGAAGCATCTCT	0.428													20	57					0	0	0.001216	0	0
MDN1	23195	broad.mit.edu	37	6	90402561	90402561	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:90402561G>A	uc003pnn.1	-	63	10304	c.10188C>T	c.(10186-10188)GCC>GCT	p.A3396A		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3396					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GTGGGCTCACGGCATCTGGAT	0.562													13	51					0	0	0.002450	0	0
MDN1	23195	broad.mit.edu	37	6	90402813	90402813	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:90402813C>T	uc003pnn.1	-	63	10052	c.9936G>A	c.(9934-9936)AAG>AAA	p.K3312K		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3312					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AGGCCTGTTTCTTCAACAGGT	0.512													12	45					0	0	0.002450	0	0
MDN1	23195	broad.mit.edu	37	6	90406124	90406124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:90406124G>A	uc003pnn.1	-	60	9454	c.9338C>T	c.(9337-9339)TCG>TTG	p.S3113L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3113					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CCAAAGCATCGAACTGATGTC	0.512													7	41					0	0	0.004482	0	0
BVES	11149	broad.mit.edu	37	6	105564670	105564670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:105564670G>A	uc003pqw.2	-	6	879	c.722C>T	c.(721-723)TCA>TTA	p.S241L	BVES_uc003pqx.2_Missense_Mutation_p.S241L|BVES_uc003pqy.2_Missense_Mutation_p.S241L	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	241	Cytoplasmic (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				GAAAGGTTCTGATTCCAGAAA	0.338													13	42					0	0	0.001855	0	0
DSE	29940	broad.mit.edu	37	6	116757777	116757777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:116757777C>T	uc003pws.2	+	6	2340	c.2146C>T	c.(2146-2148)CGT>TGT	p.R716C	DSE_uc011ebg.1_Missense_Mutation_p.R735C|DSE_uc003pwt.2_Missense_Mutation_p.R716C|DSE_uc003pwu.2_Missense_Mutation_p.R383C	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	716					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		CATTGCTGATCGTCACAAAAT	0.493													18	23					0	0	0.000958	0	0
RFX6	222546	broad.mit.edu	37	6	117201716	117201716	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:117201716G>A	uc003pxm.2	+	3	453	c.390G>A	c.(388-390)GAG>GAA	p.E130E		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	130	RFX-type winged-helix.				glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						GGCTTGAAGAGAATTACATTG	0.353													4	33					0	0	0.000248	0	0
RFX6	222546	broad.mit.edu	37	6	117246643	117246643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:117246643C>T	uc003pxm.2	+	16	1769	c.1706C>T	c.(1705-1707)TCT>TTT	p.S569F		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	569					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TTCACTGCTTCTCCGAGTTCA	0.433													25	84					0	0	0.001512	0	0
ROS1	6098	broad.mit.edu	37	6	117709098	117709098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:117709098G>A	uc003pxp.1	-	13	2058	c.1859C>T	c.(1858-1860)CCT>CTT	p.P620L	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	620	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		AGTGACTTCAGGAGGGTCTTG	0.433			T	GOPC|ROS1	glioblastoma|NSCLC								5	131					0	0	0.001168	0	0
GJA1	2697	broad.mit.edu	37	6	121768239	121768239	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:121768239C>T	uc003pyr.2	+	2	496	c.246C>T	c.(244-246)ATC>ATT	p.I82I	GJA1_uc011ebo.1_5'UTR|GJA1_uc011ebp.1_5'UTR	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	82	Helical; (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	TCCTGCAGATCATATTTGTGT	0.448													8	25					0	0	0.004482	0	0
HSF2	3298	broad.mit.edu	37	6	122733790	122733790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:122733790C>T	uc003pyu.2	+	3	398	c.211C>T	c.(211-213)CGT>TGT	p.R71C	HSF2_uc003pyt.3_Missense_Mutation_p.R71C|HSF2_uc003pyv.2_Missense_Mutation_p.R71C	NM_004506	NP_004497	Q03933	HSF2_HUMAN	heat shock transcription factor 2 isoform a	71	By similarity.				response to stress|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0				OV - Ovarian serous cystadenocarcinoma(136;0.00371)|all cancers(137;0.0299)|GBM - Glioblastoma multiforme(226;0.0586)		AGATGGTTTCCGTAAAGTAGT	0.343													12	27					0	0	0.001368	0	0
HSF2	3298	broad.mit.edu	37	6	122744791	122744791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:122744791C>T	uc003pyu.2	+	10	1323	c.1136C>T	c.(1135-1137)TCA>TTA	p.S379L	HSF2_uc003pyv.2_Missense_Mutation_p.S379L	NM_004506	NP_004497	Q03933	HSF2_HUMAN	heat shock transcription factor 2 isoform a	379	Hydrophobic repeat HR-C.				response to stress|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0				OV - Ovarian serous cystadenocarcinoma(136;0.00371)|all cancers(137;0.0299)|GBM - Glioblastoma multiforme(226;0.0586)		GCCATGCTATCAGGAAGACAA	0.343													13	14					0	0	0.004990	0	0
SAMD3	154075	broad.mit.edu	37	6	130465718	130465718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:130465718G>A	uc003qbv.2	-	13	1836	c.1510C>T	c.(1510-1512)CCT>TCT	p.P504S	SAMD3_uc003qbx.2_Missense_Mutation_p.P504S|SAMD3_uc003qbw.2_Missense_Mutation_p.P504S	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	504										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TTCAAAGAAGGAAAATAAGGA	0.388													28	49					0	0	0.001271	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762386	130762386	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:130762386G>A	uc003qca.2	+	3	1690	c.819G>A	c.(817-819)AAG>AAA	p.K273K	TMEM200A_uc010kfh.2_Silent_p.K273K|TMEM200A_uc010kfi.2_Silent_p.K273K|TMEM200A_uc003qcb.2_Silent_p.K273K	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	273	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GCGGCTCTAAGAAATGTGAAA	0.438													38	69					0	0	0.001951	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762728	130762728	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:130762728C>T	uc003qca.2	+	3	2032	c.1161C>T	c.(1159-1161)TCC>TCT	p.S387S	TMEM200A_uc010kfh.2_Silent_p.S387S|TMEM200A_uc010kfi.2_Silent_p.S387S|TMEM200A_uc003qcb.2_Silent_p.S387S	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	387	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		CCAATACATCCTTGCATTTGC	0.527													17	23					0	0	0.000958	0	0
EPB41L2	2037	broad.mit.edu	37	6	131188660	131188660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:131188660G>A	uc003qch.2	-	16	2851	c.2669C>T	c.(2668-2670)TCC>TTC	p.S890F	EPB41L2_uc003qce.1_Missense_Mutation_p.S268F|EPB41L2_uc003qcf.1_RNA|EPB41L2_uc003qcg.1_Missense_Mutation_p.S632F|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Missense_Mutation_p.S737F|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc003qcd.1_Missense_Mutation_p.S51F	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	890	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		TTCCTTGGTGGAGATTTCTGT	0.428													15	60					0	0	0.003163	0	0
EPB41L2	2037	broad.mit.edu	37	6	131190962	131190962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:131190962G>A	uc003qch.2	-	15	2530	c.2348C>T	c.(2347-2349)CCG>CTG	p.P783L	EPB41L2_uc003qce.1_Missense_Mutation_p.P161L|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Missense_Mutation_p.P713L|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_Missense_Mutation_p.P713L|EPB41L2_uc003qcd.1_5'Flank|EPB41L2_uc003qcj.1_Missense_Mutation_p.P180L	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	783					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CTTGGCTGCCGGGCGGGGTTC	0.582													51	68					0	0	0.003610	0	0
TAAR6	319100	broad.mit.edu	37	6	132891894	132891895	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:132891894_132891895CC>TT	uc011eck.1	+	1	434_435	c.434_435CC>TT	c.(433-435)ACC>ATT	p.T145I		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	145	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		ACCAAGTTCACCGTATCTGTGT	0.505													83	148					0	0	0.004672	0	0
PDE7B	27115	broad.mit.edu	37	6	136512877	136512877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:136512877C>T	uc003qgp.2	+	13	1555	c.1252C>T	c.(1252-1254)CCC>TCC	p.P418S	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.P470S	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	418					signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	GAGCCTGTTGCCCAGGCAGCA	0.642													3	9					0	0	0.004672	0	0
CCDC28A	25901	broad.mit.edu	37	6	139109522	139109522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:139109522C>T	uc003qie.2	+	5	922	c.767C>T	c.(766-768)TCC>TTC	p.S256F		NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	256	Potential.										0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		TTGAATTCTTCCATGTATCCT	0.199													12	41					0	0	0.002450	0	0
REPS1	85021	broad.mit.edu	37	6	139266400	139266400	+	Missense_Mutation	SNP	G	A	A	rs142283202		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:139266400G>A	uc003qii.2	-	4	1163	c.584C>T	c.(583-585)GCG>GTG	p.A195V	REPS1_uc003qig.3_Missense_Mutation_p.A195V|REPS1_uc011edr.1_Missense_Mutation_p.A195V|REPS1_uc003qij.2_Missense_Mutation_p.A195V|REPS1_uc003qik.2_5'UTR	NM_031922	NP_114128	Q96D71	REPS1_HUMAN	RALBP1 associated Eps domain containing 1	195						coated pit|plasma membrane	calcium ion binding|SH3 domain binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(68;0.000434)|OV - Ovarian serous cystadenocarcinoma(155;0.000548)		CCCAGGTCCCGCGAGAGGCCT	0.433													5	12					0	0	0.001168	0	0
HIVEP2	3097	broad.mit.edu	37	6	143091163	143091163	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:143091163G>A	uc003qjd.2	-	5	5456	c.4713C>T	c.(4711-4713)ATC>ATT	p.I1571I		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1571	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CCGTCTCATCGATATCTAATT	0.547													31	102					0	0	0.002836	0	0
GRM1	2911	broad.mit.edu	37	6	146720027	146720027	+	Silent	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:146720027C>A	uc010khw.1	+	8	2322	c.1852C>A	c.(1852-1854)CGG>AGG	p.R618R	GRM1_uc010khv.1_Silent_p.R618R|GRM1_uc003qll.2_Silent_p.R618R|GRM1_uc011edz.1_Silent_p.R618R|GRM1_uc011eea.1_Silent_p.R618R	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	618	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TGTACTGTACCGGGACACACC	0.478													6	146					0.00307968	0.00598428	0.003080	1	0
GRM1	2911	broad.mit.edu	37	6	146755485	146755485	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:146755485G>A	uc010khw.1	+	9	3608	c.3138G>A	c.(3136-3138)CCG>CCA	p.P1046P	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1046	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCGCGATCCCGGATTTTCACG	0.677													8	32					0	0	0.003080	0	0
RAET1K	646024	broad.mit.edu	37	6	150322188	150322188	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:150322188G>A	uc003qnq.2	-	2		c.689C>T				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						GTCCATTGAAGAGGAACTGCC	0.502													17	19					0	0	0.006122	0	0
IYD	389434	broad.mit.edu	37	6	150690288	150690288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:150690288C>T	uc003qnu.1	+	1	261	c.121C>T	c.(121-123)CGC>TGC	p.R41C	IYD_uc003qnv.1_Missense_Mutation_p.R41C|IYD_uc003qnw.1_RNA|IYD_uc003qnx.1_Missense_Mutation_p.R41C|IYD_uc010kik.1_5'UTR	NM_203395	NP_981932	Q6PHW0	IYD1_HUMAN	iodotyrosine dehalogenase 1 isoform 2	41	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	integral to membrane|plasma membrane				ovary(2)	2		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;4.16e-12)		GGCCGAAGCTCGCCCCTGGGT	0.498													36	65					0	0	0.003755	0	0
SYNE1	23345	broad.mit.edu	37	6	152563399	152563399	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:152563399G>A	uc010kiw.2	-	107	20471	c.19869C>T	c.(19867-19869)ATC>ATT	p.I6623I	SYNE1_uc010kiv.2_Silent_p.I1147I|SYNE1_uc003qos.3_Silent_p.I1147I|SYNE1_uc003qot.3_Silent_p.I6552I|SYNE1_uc003qou.3_Silent_p.I6623I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6623	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GTAGTTGCTGGATTTCCTCTT	0.403										HNSCC(10;0.0054)			17	68					0	0	0.001882	0	0
SYNE1	23345	broad.mit.edu	37	6	152646290	152646290	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:152646290G>A	uc010kiw.2	-	81	16188	c.15586C>T	c.(15586-15588)CGA>TGA	p.R5196*	SYNE1_uc003qot.3_Nonsense_Mutation_p.R5125*|SYNE1_uc003qou.3_Nonsense_Mutation_p.R5196*|SYNE1_uc010kiz.2_Nonsense_Mutation_p.R951*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5196	Spectrin 16.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCCACAGCTCGAAGGCGTGTC	0.542										HNSCC(10;0.0054)			8	147					0	0	0.001368	0	0
SYNE1	23345	broad.mit.edu	37	6	152647549	152647549	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:152647549G>C	uc010kiw.2	-	79	15777	c.15175C>G	c.(15175-15177)CTG>GTG	p.L5059V	SYNE1_uc003qot.3_Missense_Mutation_p.L4988V|SYNE1_uc003qou.3_Missense_Mutation_p.L5059V|SYNE1_uc010kiz.2_Missense_Mutation_p.L814V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5059	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGTGGGTCCAGGGTGGCTACC	0.532										HNSCC(10;0.0054)			4	86					0	0	0.000248	0	0
SYNE1	23345	broad.mit.edu	37	6	152708267	152708267	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:152708267G>A	uc010kiw.2	-	54	9029	c.8427C>T	c.(8425-8427)TTC>TTT	p.F2809F	SYNE1_uc003qot.3_Silent_p.F2816F|SYNE1_uc003qou.3_Silent_p.F2809F|SYNE1_uc010kjb.1_Silent_p.F2792F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2809	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGTGTCCTTGAAAGACTCAT	0.423										HNSCC(10;0.0054)			20	65					0	0	0.001882	0	0
SYNE1	23345	broad.mit.edu	37	6	152763308	152763308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:152763308C>T	uc010kiw.2	-	31	4512	c.3910G>A	c.(3910-3912)GGG>AGG	p.G1304R	SYNE1_uc003qot.3_Missense_Mutation_p.G1311R|SYNE1_uc003qou.3_Missense_Mutation_p.G1304R|SYNE1_uc010kjb.1_Missense_Mutation_p.G1287R|SYNE1_uc003qow.2_Missense_Mutation_p.G599R|SYNE1_uc003qox.1_Missense_Mutation_p.G820R	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1304	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GGCAGCCCCCCTTCTCCCTGC	0.592										HNSCC(10;0.0054)			33	29					0	0	0.002836	0	0
SYNE1	23345	broad.mit.edu	37	6	152826341	152826341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:152826341G>A	uc010kiw.2	-	9	1375	c.773C>T	c.(772-774)CCT>CTT	p.P258L	SYNE1_uc003qot.3_Missense_Mutation_p.P265L|SYNE1_uc003qou.3_Missense_Mutation_p.P258L|SYNE1_uc010kjb.1_Missense_Mutation_p.P258L|SYNE1_uc003qpa.1_Missense_Mutation_p.P258L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	258	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCTACCTTCAGGATCTAGCAG	0.428										HNSCC(10;0.0054)			18	29					0	0	0.000958	0	0
SYNE1	23345	broad.mit.edu	37	6	152841605	152841605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:152841605C>T	uc010kiw.2	-	6	900	c.298G>A	c.(298-300)GAA>AAA	p.E100K	SYNE1_uc003qot.3_Missense_Mutation_p.E100K|SYNE1_uc003qou.3_Missense_Mutation_p.E100K|SYNE1_uc010kjb.1_Missense_Mutation_p.E100K|SYNE1_uc003qpa.1_Missense_Mutation_p.E100K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	100	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTTCTTCCTTCGAGGAACTTG	0.443										HNSCC(10;0.0054)			25	50					0	0	0.001061	0	0
TIAM2	26230	broad.mit.edu	37	6	155485721	155485721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:155485721C>T	uc003qqb.2	+	10	3474	c.2201C>T	c.(2200-2202)TCT>TTT	p.S734F	TIAM2_uc003qqe.2_Missense_Mutation_p.S734F|TIAM2_uc010kjj.2_Missense_Mutation_p.S267F|TIAM2_uc003qqf.2_Missense_Mutation_p.S86F|TIAM2_uc011efl.1_Missense_Mutation_p.S46F|TIAM2_uc003qqg.2_Missense_Mutation_p.S46F	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	734					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TCTGTTTCCTCTTTCCATGCT	0.587													70	95					0	0	0.003610	0	0
ARID1B	57492	broad.mit.edu	37	6	157522414	157522414	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:157522414C>T	uc003qqn.2	+	18	4784	c.4632C>T	c.(4630-4632)TCC>TCT	p.S1544S	ARID1B_uc003qqo.2_Silent_p.S1504S|ARID1B_uc003qqp.2_Silent_p.S1491S	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1549	Pro-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		TCCAGCGCTCCCTGGAGAACC	0.622													23	86					0	0	0.002299	0	0
FNDC1	84624	broad.mit.edu	37	6	159682275	159682275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:159682275C>T	uc010kjv.2	+	19	5428	c.5228C>T	c.(5227-5229)CCT>CTT	p.P1743L		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1743	Fibronectin type-III 5.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CCTATCAGCCCTTCGGTCTCA	0.348													46	72					0	0	0.003610	0	0
PDE10A	10846	broad.mit.edu	37	6	165957014	165957014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:165957014G>A	uc003qun.2	-	3	321	c.80C>T	c.(79-81)CCC>CTC	p.P27L	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_5'UTR|PDE10A_uc003quo.2_Missense_Mutation_p.P37L	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	27					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	TAATACCTGGGGGTGAAGAGA	0.353													22	38					0	0	0.001882	0	0
T	6862	broad.mit.edu	37	6	166571865	166571865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:166571865C>T	uc003quu.1	-	9	1739	c.1246G>A	c.(1246-1248)GAC>AAC	p.D416N	T_uc003qut.1_Missense_Mutation_p.D417N|T_uc003quv.1_Missense_Mutation_p.D358N	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	416					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		GCTGCGGCGTCGTACTGGCTG	0.637									Chordoma_Familial_Clustering_of				56	96					0	0	0.003610	0	0
CCR6	1235	broad.mit.edu	37	6	167549829	167549829	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:167549829C>T	uc003qvl.2	+	13	2587	c.111C>T	c.(109-111)TCC>TCT	p.S37S	CCR6_uc010kkm.2_Silent_p.S37S|CCR6_uc003qvn.3_Silent_p.S37S|CCR6_uc003qvm.3_Silent_p.S37S	NM_031409	NP_113597	P51684	CCR6_HUMAN	chemokine (C-C motif) receptor 6	37	Extracellular (Potential).				cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|humoral immune response	integral to plasma membrane	C-C chemokine receptor activity			ovary(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;8.21e-20)|BRCA - Breast invasive adenocarcinoma(81;4.55e-06)|GBM - Glioblastoma multiforme(31;0.00507)		TACTGTGCTCCTTGCAGGAGG	0.433													35	93					0	0	0.004289	0	0
FRMD1	79981	broad.mit.edu	37	6	168475947	168475947	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:168475947G>A	uc003qwo.3	-	2	347	c.282C>T	c.(280-282)TTC>TTT	p.F94F	FRMD1_uc003qwn.3_Silent_p.F26F	NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	94	FERM.					cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		AGAGGCCAAAGAACTGCGCGT	0.612													19	41					0	0	0.003330	0	0
THBS2	7058	broad.mit.edu	37	6	169648950	169648950	+	Silent	SNP	G	A	A	rs139930955	by1000genomes	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:169648950G>A	uc003qwt.2	-	4	419	c.171C>T	c.(169-171)TTC>TTT	p.F57F		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	57	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CAAAGCGCACGAAGCGGTAAG	0.592													23	32					0	0	0.002299	0	0
DLL1	28514	broad.mit.edu	37	6	170592532	170592532	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:170592532A>G	uc003qxm.2	-	9	2305	c.1835T>C	c.(1834-1836)ATC>ACC	p.I612T		NM_005618	NP_005609	O00548	DLL1_HUMAN	delta-like 1 precursor	612	Cytoplasmic (Potential).				cell communication|cell fate determination|hemopoiesis|Notch receptor processing|Notch signaling pathway|regulation of cell adhesion	extracellular region|integral to plasma membrane	calcium ion binding|Notch binding			lung(4)|ovary(1)	5		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.71e-23)|BRCA - Breast invasive adenocarcinoma(81;4.81e-06)|GBM - Glioblastoma multiforme(31;0.0584)		GGTGTTCTTGATCTGCGTGGC	0.612													21	88					0	0	0.003330	0	0
SUN1	23353	broad.mit.edu	37	7	895996	895996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:895996C>T	uc011jvp.1	+	13	1431	c.1352C>T	c.(1351-1353)GCC>GTC	p.A451V	GET4_uc003sjj.1_RNA|SUN1_uc003sjf.2_Missense_Mutation_p.A368V|SUN1_uc011jvq.1_Missense_Mutation_p.A348V|SUN1_uc003sjg.2_Missense_Mutation_p.A356V|SUN1_uc011jvr.1_Missense_Mutation_p.A249V|SUN1_uc003sji.2_Missense_Mutation_p.A289V|SUN1_uc003sjk.2_Missense_Mutation_p.A90V	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	478	Perinuclear space.|Potential.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						ACTTTTTAGGCCATCCAGAAG	0.348													20	55					0	0	0.001882	0	0
CARD11	84433	broad.mit.edu	37	7	2959017	2959017	+	Silent	SNP	G	A	A	rs150171618		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:2959017G>A	uc003smv.2	-	18	2903	c.2499C>T	c.(2497-2499)CCC>CCT	p.P833P		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	833					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GGCTGTAGCTGGGTATGGTGC	0.612			Mis		DLBCL								26	41					0	0	0.001271	0	0
CARD11	84433	broad.mit.edu	37	7	2959206	2959206	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:2959206G>A	uc003smv.2	-	18	2714	c.2310C>T	c.(2308-2310)ATC>ATT	p.I770I		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	770					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CCCCCGATGTGATCAGGCCGT	0.587			Mis		DLBCL								4	15					0	0	0.000602	0	0
PMS2	5395	broad.mit.edu	37	7	6042170	6042170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:6042170G>A	uc003spl.2	-	5	538	c.451C>T	c.(451-453)CGC>TGC	p.R151C	PMS2_uc003spj.2_Missense_Mutation_p.R45C|PMS2_uc003spk.2_Missense_Mutation_p.R16C|PMS2_uc011jwl.1_Missense_Mutation_p.R16C|PMS2_uc010ktg.2_5'UTR|PMS2_uc010kte.2_Missense_Mutation_p.R151C|PMS2_uc010ktf.1_Missense_Mutation_p.R151C	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	151					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		CCTCTGGGGCGGGGGTAGGGG	0.473			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				52	112					0	0	0.003610	0	0
COL28A1	340267	broad.mit.edu	37	7	7495724	7495724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:7495724C>T	uc003src.1	-	16	1439	c.1322G>A	c.(1321-1323)GGA>GAA	p.G441E	COL28A1_uc011jxe.1_Missense_Mutation_p.G124E|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	441					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TCCTTGGGGTCCCACAGGTCC	0.428													16	58					0	0	0.001216	0	0
COL28A1	340267	broad.mit.edu	37	7	7530255	7530255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:7530255G>A	uc003src.1	-	12	1166	c.1049C>T	c.(1048-1050)CCT>CTT	p.P350L	COL28A1_uc011jxe.1_Missense_Mutation_p.L36F|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	350	Collagen-like 2.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		AGAACCATAAGGACCAGGAGG	0.433													6	20					0	0	0.003080	0	0
THSD7A	221981	broad.mit.edu	37	7	11485934	11485934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:11485934C>T	uc003ssf.3	-	13	3070	c.2818G>A	c.(2818-2820)GAA>AAA	p.E940K		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	940	TSP type-1 9.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TTACATTTTTCCTTCTTTTTA	0.353										HNSCC(18;0.044)			9	28					0	0	0.000673	0	0
MACC1	346389	broad.mit.edu	37	7	20199187	20199187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:20199187G>A	uc003sus.3	-	5	1106	c.797C>T	c.(796-798)TCG>TTG	p.S266L	MACC1_uc010kug.2_Missense_Mutation_p.S266L	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	266					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						CACAGTGCACGAAAGATCATG	0.473													21	37					0	0	0.002780	0	0
ABCB5	340273	broad.mit.edu	37	7	20766722	20766722	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:20766722C>T	uc003suw.3	+	13	1896	c.1350C>T	c.(1348-1350)GCC>GCT	p.A450A	ABCB5_uc010kuh.2_Silent_p.A895A|ABCB5_uc003sux.1_Silent_p.A73A	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	450	Cytoplasmic (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GGGAAAAAGCCTTCGAGCAAA	0.323													25	54					0	0	0.005443	0	0
STK31	56164	broad.mit.edu	37	7	23871957	23871957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:23871957G>A	uc003sws.3	+	24	3099	c.3032G>A	c.(3031-3033)AGA>AAA	p.R1011K	STK31_uc003swt.3_Missense_Mutation_p.R988K|STK31_uc011jze.1_Missense_Mutation_p.R988K|STK31_uc010kuq.2_Missense_Mutation_p.R988K|STK31_uc003swv.1_Missense_Mutation_p.R177K	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	1011	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GAGAAGACAAGAAATGGTGAA	0.313													60	118					0	0	0.003610	0	0
MPP6	51678	broad.mit.edu	37	7	24703293	24703293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:24703293G>A	uc003swx.2	+	7	1035	c.736G>A	c.(736-738)GGA>AGA	p.G246R	MPP6_uc003swy.2_Missense_Mutation_p.G246R|MPP6_uc010kur.2_5'Flank	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	246	SH3.				protein complex assembly		protein binding				0						GTTTTCCAAAGGAGAGATTCT	0.343													23	65					0	0	0.004656	0	0
SNX10	29887	broad.mit.edu	37	7	26404214	26404214	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:26404214C>T	uc003sxx.2	+	4	386	c.171C>T	c.(169-171)TTC>TTT	p.F57F	SNX10_uc011jzg.1_Silent_p.F80F|SNX10_uc010kuu.2_Silent_p.F57F|SNX10_uc010kuv.2_Silent_p.F53F|SNX10_uc010kuw.2_Intron	NM_013322	NP_037454	Q9Y5X0	SNX10_HUMAN	sorting nexin 10	57	PX.				cell communication|endosome organization|protein transport	extrinsic to endosome membrane	1-phosphatidylinositol binding				0						ATAGAGAATTCGTGTGGCTGA	0.358													22	29					0	0	0.004656	0	0
SKAP2	8935	broad.mit.edu	37	7	26883666	26883666	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:26883666T>C	uc003syc.2	-	4	583	c.290A>G	c.(289-291)GAT>GGT	p.D97G	SKAP2_uc011jzi.1_5'UTR|SKAP2_uc011jzj.1_Missense_Mutation_p.D82G	NM_003930	NP_003921	O75563	SKAP2_HUMAN	src kinase associated phosphoprotein 2	97					B cell activation|cell junction assembly|protein complex assembly|signal transduction	cytosol|plasma membrane	SH3/SH2 adaptor activity			pancreas(1)	1						GGGGGCTTCATCGTCTTTATC	0.413													43	123					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	7	29771646	29771646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:29771646G>A	uc003tai.2	+	3	184	c.64G>A	c.(64-66)GAA>AAA	p.E22K						Homo sapiens DPY-19-like 2 pseudogene 3 (DPY19L2P3) pseudogene mRNA, complete sequence.																		TCCACATTACGAAGATGCAGA	0.353													10	40					0	0	0.001368	0	0
NOD1	10392	broad.mit.edu	37	7	30492007	30492007	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:30492007G>A	uc003tav.2	-	6	1549	c.1026C>T	c.(1024-1026)TTC>TTT	p.F342F	NOD1_uc010kvs.2_3'UTR	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	342	NACHT.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						TCTTCCGCAGGAACTGGCGCG	0.672													27	43					0	0	0.001512	0	0
PDE1C	5137	broad.mit.edu	37	7	31864483	31864483	+	Silent	SNP	C	T	T	rs140362011		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:31864483C>T	uc003tcm.1	-	13	1873	c.1404G>A	c.(1402-1404)TCG>TCA	p.S468S	PDE1C_uc003tcn.1_Silent_p.S468S|PDE1C_uc003tco.1_Silent_p.S528S|PDE1C_uc003tcr.2_Silent_p.S468S|PDE1C_uc003tcs.2_Silent_p.S468S	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	468	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding	p.S468S(1)		skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CCACTGACCTCGAACGCCTCT	0.507													15	21					0	0	0.002450	0	0
NPSR1	387129	broad.mit.edu	37	7	34874056	34874056	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:34874056G>A	uc003teg.1	+	6	869	c.741G>A	c.(739-741)GTG>GTA	p.V247V	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.V247V|NPSR1_uc010kwt.1_Silent_p.V94V|NPSR1_uc010kwu.1_Silent_p.V37V|NPSR1_uc010kwv.1_Silent_p.V181V|NPSR1_uc003tei.1_Silent_p.V247V|NPSR1_uc010kww.1_Silent_p.V236V|NPSR1_uc011kar.1_Silent_p.V181V|AAA1_uc010kwy.2_5'Flank|AAA1_uc003tek.3_5'Flank	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	247	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	ACGAAACAGTGATTTCCAACT	0.423													18	22					0	0	0.001882	0	0
KIAA0895	23366	broad.mit.edu	37	7	36370647	36370647	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:36370647G>A	uc003tfd.2	-	6	1399	c.1348C>T	c.(1348-1350)CAA>TAA	p.Q450*	KIAA0895_uc003tfc.2_Nonsense_Mutation_p.Q437*|KIAA0895_uc011kaw.1_Nonsense_Mutation_p.Q347*|KIAA0895_uc003tfb.2_Nonsense_Mutation_p.Q399*|KIAA0895_uc011kax.1_Nonsense_Mutation_p.Q447*	NM_001100425	NP_001093895	Q8NCT3	K0895_HUMAN	hypothetical protein LOC23366 isoform 1	450											0						CGGAGGATTTGAAGAATTCCA	0.428													26	75					0	0	0.001512	0	0
ANLN	54443	broad.mit.edu	37	7	36455450	36455450	+	Silent	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:36455450C>A	uc003tff.2	+	8	1683	c.1479C>A	c.(1477-1479)ACC>ACA	p.T493T	ANLN_uc011kaz.1_Silent_p.T405T|ANLN_uc003tfg.2_Silent_p.T493T|ANLN_uc010kxe.2_Silent_p.T493T	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	493	Interaction with F-actin.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						AAAAGGTGACCGAAAACCAGA	0.318													6	142					0.00198382	0.00385831	0.001984	1	0
ANLN	54443	broad.mit.edu	37	7	36458935	36458936	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:36458935_36458936CC>TT	uc003tff.2	+	10	1920_1921	c.1716_1717CC>TT	c.(1714-1719)GTCCTA>GTTTTA	p.572_573VL>VL	ANLN_uc011kaz.1_Silent_p.484_485VL>VL|ANLN_uc003tfg.2_Silent_p.535_536VL>VL|ANLN_uc010kxe.2_Silent_p.534_535VL>VL	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	572_573	Interaction with F-actin.|Potential.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						TCAGTGATGTCCTAGAGGAAGG	0.386													20	47					0	0	0.004672	0	0
ANLN	54443	broad.mit.edu	37	7	36478869	36478869	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:36478869G>A	uc003tff.2	+	21	3144	c.2940G>A	c.(2938-2940)GTG>GTA	p.V980V	ANLN_uc011kaz.1_Silent_p.V892V|ANLN_uc003tfg.2_Silent_p.V943V|ANLN_uc010kxe.2_Silent_p.V942V	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	980	Localization to the cleavage furrow.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						aatGTCAAGTGAATTCCAGTG	0.313													16	30					0	0	0.003163	0	0
ELMO1	9844	broad.mit.edu	37	7	37382274	37382274	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:37382274G>A	uc003tfk.1	-	2	328	c.21C>T	c.(19-21)ATC>ATT	p.I7I	ELMO1_uc010kxg.1_Silent_p.I7I	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	7					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						CCACCTTGACGATGTCCGCGG	0.498													58	130					0	0	0.003610	0	0
C7orf10	79783	broad.mit.edu	37	7	40228112	40228112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:40228112G>A	uc003thn.1	+	4	290	c.245G>A	c.(244-246)CGA>CAA	p.R82Q	C7orf10_uc003thm.1_Missense_Mutation_p.R89Q|C7orf10_uc003tho.1_Missense_Mutation_p.R82Q	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	89							transferase activity			ovary(2)	2						GATGATACACGAACTTGGGGG	0.279													16	35					0	0	0.002299	0	0
GLI3	2737	broad.mit.edu	37	7	42005140	42005140	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:42005140G>A	uc011kbh.1	-	15	3622	c.3531C>T	c.(3529-3531)CTC>CTT	p.L1177L	GLI3_uc011kbg.1_Silent_p.L1118L	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1177					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GCCCACACTTGAGCTTGGAGG	0.667									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				58	98					0	0	0.003610	0	0
HECW1	23072	broad.mit.edu	37	7	43547680	43547680	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:43547680G>A	uc003tid.1	+	23	4421	c.3816G>A	c.(3814-3816)CGG>CGA	p.R1272R	HECW1_uc011kbi.1_Silent_p.R1238R	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1272	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CCTATTCGCGGAAAGAGCTCC	0.542													17	29					0	0	0.001523	0	0
POLM	27434	broad.mit.edu	37	7	44119559	44119559	+	Splice_Site	SNP	C	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:44119559C>G	uc003tjt.2	-	3	465	c.373_splice	c.e3-1	p.V125_splice	POLM_uc003tju.2_Splice_Site_p.V125_splice|POLM_uc003tjx.2_Splice_Site_p.V125_splice|POLM_uc003tjv.2_Splice_Site|POLM_uc011kbt.1_Intron|POLM_uc003tka.1_5'Flank|POLM_uc003tjz.3_Splice_Site_p.V125_splice|POLM_uc011kbu.1_Intron|POLM_uc010kxy.2_Splice_Site_p.V125_splice	NM_013284	NP_037416	Q9NP87	DPOLM_HUMAN	DNA-directed DNA polymerase mu						DNA recombination|DNA repair	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3						GCCCAGCCACCTGGGGATGGG	0.642								DNA_polymerases_(catalytic_subunits)					18	20					0	0	0.006122	0	0
GCK	2645	broad.mit.edu	37	7	44189570	44189570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:44189570C>T	uc003tkl.2	-	5	1047	c.577G>A	c.(577-579)GGG>AGG	p.G193R	GCK_uc003tkj.1_Missense_Mutation_p.G192R|GCK_uc003tkk.1_Missense_Mutation_p.G194R	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	193					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						CCCCTCACCCCTCTCCGTTTG	0.632													73	152					0	0	0.003610	0	0
NPC1L1	29881	broad.mit.edu	37	7	44571751	44571751	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:44571751C>T	uc003tlb.2	-	9	2531	c.2475G>A	c.(2473-2475)GAG>GAA	p.E825E	NPC1L1_uc003tlc.2_Silent_p.E825E|NPC1L1_uc011kbw.1_Silent_p.E825E	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	825	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GCAGGAGCCCCTCTCCCTGGC	0.642													4	85					0	0	0.000602	0	0
PKD1L1	168507	broad.mit.edu	37	7	47866967	47866967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:47866967G>A	uc003tny.1	-	45	6835	c.6835C>T	c.(6835-6837)CGC>TGC	p.R2279C	C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Missense_Mutation_p.R6C	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2279	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GCCCGTGTGCGACTCTCTCTC	0.667													17	32					0	0	0.001523	0	0
PKD1L1	168507	broad.mit.edu	37	7	47874589	47874589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:47874589C>T	uc003tny.1	-	39	6103	c.6103G>A	c.(6103-6105)GGA>AGA	p.G2035R		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2035	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GTCTGTGCTCCTCCTCTAAGT	0.498													29	74					0	0	0.003271	0	0
ABCA13	154664	broad.mit.edu	37	7	48312795	48312795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:48312795G>A	uc003toq.2	+	17	3557	c.3532G>A	c.(3532-3534)GGT>AGT	p.G1178S	ABCA13_uc010kyr.2_Missense_Mutation_p.G681S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1178					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TCTTCATCATGGTTTCACTCA	0.373													22	43					0	0	0.001523	0	0
ABCA13	154664	broad.mit.edu	37	7	48313338	48313338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:48313338G>A	uc003toq.2	+	17	4100	c.4075G>A	c.(4075-4077)GAA>AAA	p.E1359K	ABCA13_uc010kyr.2_Missense_Mutation_p.E862K	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1359					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GTGTATTTTAGAAGATGGCTT	0.333													11	24					0	0	0.000978	0	0
CDC14C	168448	broad.mit.edu	37	7	48964610	48964610	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:48964610G>A	uc010kyv.1	+	1	454	c.342G>A	c.(340-342)TTG>TTA	p.L114L		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						TTATATACTTGGGGAGAACCC	0.378													23	42					0	0	0.001951	0	0
LANCL2	55915	broad.mit.edu	37	7	55496114	55496114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:55496114C>T	uc003tqp.2	+	8	1810	c.1232C>T	c.(1231-1233)CCT>CTT	p.P411L		NM_018697	NP_061167	Q9NS86	LANC2_HUMAN	LanC lantibiotic synthetase component C-like 2	411					negative regulation of transcription, DNA-dependent|positive regulation of abscisic acid mediated signaling pathway	cortical actin cytoskeleton|cytosol|nucleus|plasma membrane	ATP binding|catalytic activity|GTP binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding			ovary(1)|skin(1)	2	Breast(14;0.0379)		Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00128)|Epithelial(13;0.0706)			TGCCGCATTCCTGACAGACCC	0.448													20	58					0	0	0.001523	0	0
LOC442308	442308	broad.mit.edu	37	7	55714124	55714124	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:55714124C>T	uc010kzj.2	+	1		c.813C>T				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						TGGCTTTGCCCCTTTCACCAG	0.547													10	18					0	0	0.000978	0	0
ZNF479	90827	broad.mit.edu	37	7	57188460	57188460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:57188460G>A	uc010kzo.2	-	5	933	c.662C>T	c.(661-663)TCC>TTC	p.S221F		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	221	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			GCAGTTAAAGGATTTGCCACA	0.373													4	16					0	0	0.000248	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334433	72334433	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:72334433C>T	uc010lal.1	-	1		c.5223G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						TTCTCTCAGGCCGATGACCTC	0.547													26	41					0	0	0.005443	0	0
UPK3B	80761	broad.mit.edu	37	7	76140982	76140982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:76140982G>A	uc003ufq.2	+	2	634	c.409G>A	c.(409-411)GGC>AGC	p.G137S	UPK3B_uc003ufo.2_Missense_Mutation_p.G82S|UPK3B_uc010ldk.1_Missense_Mutation_p.G82S	NM_030570	NP_085047	Q9BT76	UPK3B_HUMAN	uroplakin 3B isoform a	137	Lumenal (Potential).				negative regulation of gene expression	integral to membrane|plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(862;0.204)				AGCCTCCAGGGGCTTCCAGAA	0.622													8	8					0	0	0.000673	0	0
CCDC146	57639	broad.mit.edu	37	7	76889394	76889394	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:76889394T>C	uc003uga.2	+	8	954	c.827T>C	c.(826-828)GTT>GCT	p.V276A	CCDC146_uc010ldp.2_Missense_Mutation_p.V22A	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	276	Potential.									ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				CTAAAGAAAGTTGAAAACAAG	0.318													65	97					0	0	0.003610	0	0
PION	54103	broad.mit.edu	37	7	77010657	77010657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:77010657G>A	uc003ugf.2	-	8	620	c.541C>T	c.(541-543)CGT>TGT	p.R181C	PION_uc003ugg.1_5'UTR	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	181					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						ACATGGATACGAAATTGTTCA	0.294													13	37					0	0	0.004990	0	0
CD36	948	broad.mit.edu	37	7	80293749	80293749	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:80293749A>G	uc003uhc.2	+	10	1321	c.637A>G	c.(637-639)AAA>GAA	p.K213E	CD36_uc003uhd.3_Missense_Mutation_p.K213E|CD36_uc011kgv.1_Missense_Mutation_p.K137E|CD36_uc003uhe.3_Missense_Mutation_p.K213E|CD36_uc003uhf.3_Missense_Mutation_p.K213E|CD36_uc003uhg.3_Missense_Mutation_p.K213E|CD36_uc003uhh.3_Missense_Mutation_p.K213E	NM_001127444	NP_001120916	P16671	CD36_HUMAN	CD36 antigen	213	Extracellular (Potential).				cell adhesion|cGMP-mediated signaling|cholesterol transport|lipid metabolic process|lipid storage|lipoprotein transport|low-density lipoprotein particle clearance|nitric oxide mediated signal transduction|plasma membrane long-chain fatty acid transport|platelet activation|platelet degranulation|positive regulation of cell-matrix adhesion|positive regulation of macrophage derived foam cell differentiation	integral to plasma membrane|membrane fraction|platelet alpha granule membrane	lipid binding|low-density lipoprotein receptor activity|thrombospondin receptor activity|transforming growth factor beta binding			ovary(1)	1						TGGAGTTTATAAAGTTTTCAA	0.289													53	113					0	0	0.003610	0	0
HGF	3082	broad.mit.edu	37	7	81334775	81334775	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:81334775T>C	uc003uhl.2	-	17	2106	c.1941A>G	c.(1939-1941)CGA>CGG	p.R647R	HGF_uc003uhm.2_Silent_p.R642R	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	647	Peptidase S1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TCACCTTCCCTCGATGATGCT	0.403													9	11					0	0	0.004482	0	0
PCLO	27445	broad.mit.edu	37	7	82583985	82583985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:82583985G>A	uc003uhx.2	-	5	6573	c.6284C>T	c.(6283-6285)ACC>ATC	p.T2095I	PCLO_uc003uhv.2_Missense_Mutation_p.T2095I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2026					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAAGTCCATGGTGGACTCTGT	0.488													10	32					0	0	0.001368	0	0
GRM3	2913	broad.mit.edu	37	7	86394533	86394533	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:86394533G>A	uc003uid.2	+	2	1171	c.72G>A	c.(70-72)GGG>GGA	p.G24G	GRM3_uc010lef.2_Silent_p.G22G|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	24	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCTCTTTAGGGGACCATAACT	0.393													7	14					0	0	0.001984	0	0
DMTF1	9988	broad.mit.edu	37	7	86824126	86824126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:86824126C>T	uc003uih.2	+	17	2481	c.2155C>T	c.(2155-2157)CCT>TCT	p.P719S	DMTF1_uc003uii.2_Missense_Mutation_p.P453S|DMTF1_uc003uij.2_Missense_Mutation_p.P453S|DMTF1_uc011khb.1_Missense_Mutation_p.P631S|DMTF1_uc003uik.2_RNA|DMTF1_uc003uil.2_Missense_Mutation_p.P719S|DMTF1_uc003uin.2_Missense_Mutation_p.P453S	NM_001142327	NP_001135799	Q9Y222	DMTF1_HUMAN	cyclin D binding myb-like transcription factor 1	719	Interaction with CCND1, CCND2 and CCND3 (By similarity).|Required for transcriptional activation (By similarity).				cell cycle	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(14;0.0058)					ATCTGTCTTGCCTTTGACAAC	0.323													6	9					0	0	0.004482	0	0
ADAM22	53616	broad.mit.edu	37	7	87810903	87810903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:87810903G>A	uc003ujn.2	+	28	2571	c.2492G>A	c.(2491-2493)CGA>CAA	p.R831Q	ADAM22_uc003ujk.1_Missense_Mutation_p.R831Q|ADAM22_uc003ujl.1_Missense_Mutation_p.R795Q|ADAM22_uc003ujm.2_Missense_Mutation_p.R795Q|ADAM22_uc003ujo.2_Missense_Mutation_p.R795Q|ADAM22_uc003ujp.1_Missense_Mutation_p.R883Q	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	831	Cytoplasmic (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			GGGCGACCTCGAAGTAACTCT	0.403													17	18					0	0	0.006122	0	0
AKAP9	10142	broad.mit.edu	37	7	91712761	91712761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:91712761C>T	uc003ulg.2	+	33	8663	c.8438C>T	c.(8437-8439)TCC>TTC	p.S2813F	AKAP9_uc003ulf.2_Missense_Mutation_p.S2805F|AKAP9_uc003uli.2_Missense_Mutation_p.S2436F|AKAP9_uc003ulj.2_Missense_Mutation_p.S583F|AKAP9_uc003ulk.2_Missense_Mutation_p.S88F	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2825					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGTGAATGTTCCTCAGAAGAA	0.363			T	BRAF	papillary thyroid								10	25					0	0	0.000443	0	0
SAMD9	54809	broad.mit.edu	37	7	92731710	92731710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:92731710C>T	uc003umf.2	-	3	3957	c.3701G>A	c.(3700-3702)GGA>GAA	p.G1234E	SAMD9_uc003umg.2_Missense_Mutation_p.G1234E	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1234						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			ATCACTACTTCCTGATACAAA	0.294													42	100					0	0	0.002852	0	0
SAMD9L	219285	broad.mit.edu	37	7	92762117	92762118	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:92762117_92762118GG>AA	uc003umh.1	-	5	4383_4384	c.3167_3168CC>TT	c.(3166-3168)TCC>TTT	p.S1056F	SAMD9L_uc003umj.1_Missense_Mutation_p.S1056F|SAMD9L_uc003umi.1_Missense_Mutation_p.S1056F|SAMD9L_uc010lfb.1_Missense_Mutation_p.S1056F|SAMD9L_uc003umk.1_Missense_Mutation_p.S1056F|SAMD9L_uc010lfc.1_Missense_Mutation_p.S1056F|SAMD9L_uc010lfd.1_Missense_Mutation_p.S1056F|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1056										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CCATTAATGGGGAAAACAGAGT	0.391													14	37					0	0	0.004672	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763495	92763495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:92763495C>T	uc003umh.1	-	5	3006	c.1790G>A	c.(1789-1791)AGA>AAA	p.R597K	SAMD9L_uc003umj.1_Missense_Mutation_p.R597K|SAMD9L_uc003umi.1_Missense_Mutation_p.R597K|SAMD9L_uc010lfb.1_Missense_Mutation_p.R597K|SAMD9L_uc003umk.1_Missense_Mutation_p.R597K|SAMD9L_uc010lfc.1_Missense_Mutation_p.R597K|SAMD9L_uc010lfd.1_Missense_Mutation_p.R597K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	597										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CATCTTCATTCTTGTTTGTAG	0.348													28	54					0	0	0.005443	0	0
LMTK2	22853	broad.mit.edu	37	7	97833295	97833295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:97833295C>T	uc003upd.1	+	13	4573	c.4280C>T	c.(4279-4281)CCT>CTT	p.P1427L		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1427					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					TCCCCAGATCCTTTTATGTCA	0.507													80	113					0	0	0.003610	0	0
TECPR1	25851	broad.mit.edu	37	7	97852324	97852324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:97852324C>T	uc003upg.2	-	21	3111	c.2906G>A	c.(2905-2907)GGC>GAC	p.G969D		NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	969	TECPR 6.					integral to membrane	protein binding			pancreas(1)	1						CTCCGACACGCCCAGGCGGCA	0.652													6	13					0	0	0.003080	0	0
FAM200A	221786	broad.mit.edu	37	7	99145993	99145994	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:99145993_99145994GG>AA	uc003ura.2	-	2	376_377	c.37_38CC>TT	c.(37-39)CCA>TTA	p.P13L	FAM200A_uc003urb.2_Missense_Mutation_p.P13L	NM_145111	NP_659802	Q8TCP9	F200A_HUMAN	hypothetical protein LOC221786	13	Extracellular (Potential).					integral to membrane	nucleic acid binding				0						GGTACCCCCTGGAGACAAATCT	0.401													36	70					0	0	0.004672	0	0
CYP3A4	1576	broad.mit.edu	37	7	99359815	99359815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:99359815G>A	uc003urv.1	-	11	1206	c.1102C>T	c.(1102-1104)CCA>TCA	p.P368S	CYP3A4_uc003urw.1_Missense_Mutation_p.P367S|CYP3A4_uc011kiz.1_Missense_Mutation_p.P327S|CYP3A4_uc011kja.1_Missense_Mutation_p.P319S|CYP3A4_uc011kjb.1_Missense_Mutation_p.P218S	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	368					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	ATAGCAATTGGGAATAATCTG	0.443													16	45					0	0	0.004007	0	0
CYP3A4	1576	broad.mit.edu	37	7	99367468	99367468	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:99367468G>A	uc003urv.1	-	6	548	c.444C>T	c.(442-444)ATC>ATT	p.I148I	CYP3A4_uc003urw.1_Silent_p.I148I|CYP3A4_uc011kiz.1_Intron|CYP3A4_uc011kja.1_Silent_p.I99I|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	148					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	ACTGGGCAATGATAGGGACCA	0.498													14	50					0	0	0.002780	0	0
ZCWPW1	55063	broad.mit.edu	37	7	99998722	99998722	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:99998722A>G	uc003uut.2	-	18	2110	c.1862T>C	c.(1861-1863)GTT>GCT	p.V621A	ZCWPW1_uc011kjq.1_Missense_Mutation_p.V501A|ZCWPW1_uc003uur.2_3'UTR|ZCWPW1_uc003uus.2_Missense_Mutation_p.V450A|ZCWPW1_uc011kjr.1_3'UTR|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	621							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTCTCTCCCAACATCTTCCAT	0.627													14	30					0	0	0.003163	0	0
ACTL6B	51412	broad.mit.edu	37	7	100245114	100245114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:100245114C>T	uc003uvy.2	-	8	819	c.712G>A	c.(712-714)GAG>AAG	p.E238K	ACTL6B_uc003uvx.1_Missense_Mutation_p.E29K|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	238					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GGTAGCTTCTCCTTCTTCTTC	0.612													32	63					0	0	0.001287	0	0
ZAN	7455	broad.mit.edu	37	7	100333359	100333359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:100333359G>A	uc003uwj.2	+	3	235	c.70G>A	c.(70-72)GAC>AAC	p.D24N	ZAN_uc003uwk.2_Missense_Mutation_p.D24N|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	24	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GAAGCCTCCGGACCAGAAGCT	0.478													10	12					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	7	100552275	100552275	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:100552275G>A	uc003uxk.1	+	1		c.1526G>A			uc003uxl.1_Missense_Mutation_p.M242I					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		GTGTTGAAATGGATCCCAGCA	0.483													80	287					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100680237	100680237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:100680237C>T	uc003uxp.1	+	3	5593	c.5540C>T	c.(5539-5541)TCA>TTA	p.S1847L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1847	Extracellular (Potential).|Ser-rich.|29.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCAGTCAGTTCATCTCCTACA	0.512													59	158					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100683297	100683297	+	Missense_Mutation	SNP	G	A	A	rs141281393	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:100683297G>A	uc003uxp.1	+	3	8653	c.8600G>A	c.(8599-8601)GGA>GAA	p.G2867E	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2867	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|46.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCTAGTGAAGGAAGTACTCTA	0.493													105	226					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100693850	100693850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:100693850G>A	uc003uxp.1	+	7	12861	c.12808G>A	c.(12808-12810)GAA>AAA	p.E4270K	MUC17_uc010lho.1_Intron	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4270	Extracellular (Potential).|SEA.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAATGCCACCGAAGTAGTGAA	0.463													30	45					0	0	0.001271	0	0
CUX1	1523	broad.mit.edu	37	7	101840399	101840399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:101840399G>A	uc003uyx.3	+	15	1746	c.1708G>A	c.(1708-1710)GGA>AGA	p.G570R	CUX1_uc003uys.3_Missense_Mutation_p.G581R|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	570	CUT 1.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GCACAATATCGGACAACGTAT	0.542													46	108					0	0	0.003610	0	0
CUX1	1523	broad.mit.edu	37	7	101840438	101840438	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:101840438C>T	uc003uyx.3	+	15	1785	c.1747C>T	c.(1747-1749)CAA>TAA	p.Q583*	CUX1_uc003uys.3_Nonsense_Mutation_p.Q594*|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	583	CUT 1.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GGGACTGTCTCAAGGGTCCGT	0.507													36	92					0	0	0.004878	0	0
LRRC17	10234	broad.mit.edu	37	7	102584731	102584731	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:102584731G>C	uc003vau.2	+	4	1392	c.1003G>C	c.(1003-1005)GTA>CTA	p.V335L	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_3'UTR	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	335	LRR 6.				bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						TGACTATGGCGTATTAGAAGA	0.368													51	101					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103301924	103301924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:103301924G>A	uc003vca.2	-	12	1500	c.1340C>T	c.(1339-1341)TCA>TTA	p.S447L	RELN_uc010liz.2_Missense_Mutation_p.S447L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	447					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TGATAAGCCTGATTCTATCGT	0.408													13	31					0	0	0.001855	0	0
CDHR3	222256	broad.mit.edu	37	7	105624729	105624729	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:105624729C>T	uc003vdl.3	+	4	615	c.507C>T	c.(505-507)CCC>CCT	p.P169P	CDHR3_uc003vdk.2_5'UTR|CDHR3_uc011kls.1_Intron|CDHR3_uc003vdm.3_Silent_p.P156P|CDHR3_uc011klt.1_Silent_p.P81P	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	169	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GAAACATTCCCCTCAGTGTAA	0.502													9	20					0	0	0.004482	0	0
PIK3CG	5294	broad.mit.edu	37	7	106509677	106509677	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:106509677G>A	uc003vdv.3	+	2	1756	c.1671G>A	c.(1669-1671)GCG>GCA	p.A557A	PIK3CG_uc003vdu.2_Silent_p.A557A|PIK3CG_uc003vdw.2_Silent_p.A557A	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	557					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding	p.A557A(2)		lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						AATTGGAGGCGATCATAGCCA	0.532													22	36					0	0	0.001882	0	0
PNPLA8	50640	broad.mit.edu	37	7	108154646	108154646	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:108154646A>T	uc003vff.1	-	5	1555	c.1148T>A	c.(1147-1149)GTT>GAT	p.V383D	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Missense_Mutation_p.V383D|PNPLA8_uc003vfi.1_Missense_Mutation_p.V283D|PNPLA8_uc003vfj.1_Missense_Mutation_p.V383D|PNPLA8_uc003vfk.1_Missense_Mutation_p.V283D	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	383					fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						CAGTTCTTCAACCCTAGTAAT	0.378													138	233					0	0	0.003610	0	0
WNT2	7472	broad.mit.edu	37	7	116937720	116937720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:116937720C>T	uc003viz.2	-	4	1099	c.799G>A	c.(799-801)GAC>AAC	p.D267N	WNT2_uc003vja.2_Missense_Mutation_p.D171N	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	267					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		TACACGAGGTCATTTTTCGTT	0.438													28	67					0	0	0.001786	0	0
ASB15	142685	broad.mit.edu	37	7	123264718	123264718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:123264718G>A	uc003vku.1	+	8	839	c.547G>A	c.(547-549)GAA>AAA	p.E183K	ASB15_uc003vkv.1_Missense_Mutation_p.E183K|ASB15_uc003vkw.1_Missense_Mutation_p.E183K	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	183	ANK 3.				intracellular signal transduction					skin(2)|lung(1)	3						AGCAATGCATGAAGCAGCCAA	0.498											OREG0018282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	71					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	7	124116578	124116578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:124116578C>T	uc011kod.1	+	1	154	c.154C>T	c.(154-156)CCT>TCT	p.P52S		NM_001085395	NP_001078864			RecName: Full=Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2;          Short=CTD phosphatase SSU72-like protein 2;          EC=3.1.3.16;																		ACCCAATCATCCTGTAGTTTA	0.458													87	123					0	0	0.003610	0	0
ZNF800	168850	broad.mit.edu	37	7	127013565	127013565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:127013565C>T	uc003vlx.1	-	5	2088	c.1825G>A	c.(1825-1827)GTA>ATA	p.V609I	ZNF800_uc003vlw.1_Missense_Mutation_p.V512I|ZNF800_uc003vly.1_Missense_Mutation_p.V609I|ZNF800_uc010lla.2_Missense_Mutation_p.V609I	NM_176814	NP_789784	Q2TB10	ZN800_HUMAN	zinc finger protein 800	609					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GTGACTTTTACTTCAATACCG	0.373													29	49					0	0	0.001512	0	0
TNPO3	23534	broad.mit.edu	37	7	128630095	128630095	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:128630095A>G	uc003vol.1	-	11	1792	c.1418T>C	c.(1417-1419)GTA>GCA	p.V473A	TNPO3_uc003vom.1_Missense_Mutation_p.V407A|TNPO3_uc010lly.1_Missense_Mutation_p.V507A|TNPO3_uc010llz.1_Missense_Mutation_p.V473A	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	473					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						AGCCGTATGTACGGTCTCCGG	0.473													34	52					0	0	0.003755	0	0
AHCYL2	23382	broad.mit.edu	37	7	129046259	129046259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:129046259C>T	uc011kov.1	+	10	1301	c.1247C>T	c.(1246-1248)TCC>TTC	p.S416F	AHCYL2_uc003vot.2_Missense_Mutation_p.S415F|AHCYL2_uc003vov.2_Missense_Mutation_p.S313F|AHCYL2_uc011kow.1_Missense_Mutation_p.S314F|AHCYL2_uc011kox.1_Missense_Mutation_p.S313F	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	416					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						GCCATGGGCTCCATTGTGTAT	0.498													40	72					0	0	0.003214	0	0
KLHDC10	23008	broad.mit.edu	37	7	129710498	129710498	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:129710498G>A	uc003vpj.1	+	1	150	c.15G>A	c.(13-15)CAG>CAA	p.Q5Q	KLHDC10_uc003vpk.1_Silent_p.Q5Q|KLHDC10_uc010lmb.1_Silent_p.Q5Q	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	5											0						CGGCCGCCCAgggctgggaca	0.348													4	9					0	0	0.001168	0	0
TSGA13	114960	broad.mit.edu	37	7	130368484	130368484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:130368484G>A	uc003vqi.2	-	3	507	c.50C>T	c.(49-51)TCA>TTA	p.S17L	TSGA13_uc003vqj.2_Missense_Mutation_p.S17L	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	17										ovary(2)	2	Melanoma(18;0.0435)					GCTATTTTCTGAAGTCTTTGA	0.413													191	425					0	0	0.003610	0	0
KIAA1549	57670	broad.mit.edu	37	7	138601809	138601809	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:138601809T>C	uc011kql.1	-	2	2612	c.2563A>G	c.(2563-2565)ACC>GCC	p.T855A	KIAA1549_uc003vuk.3_Missense_Mutation_p.T805A|KIAA1549_uc011kqj.1_Missense_Mutation_p.T855A	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	855						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGGAAGGGGGTTGCTTCAGAA	0.577			O	BRAF	pilocytic astrocytoma								15	17					0	0	0.004990	0	0
CLEC5A	23601	broad.mit.edu	37	7	141631543	141631543	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:141631543G>A	uc003vwv.1	-	6	626	c.429C>T	c.(427-429)ATC>ATT	p.I143I	CLEC5A_uc011krm.1_Silent_p.I120I|CLEC5A_uc003vww.1_Silent_p.I142I|CLEC5A_uc010lnq.1_Silent_p.I120I|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	143	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					CAGAGTTGTTGATCCAACGCC	0.408													29	64					0	0	0.003755	0	0
CLEC5A	23601	broad.mit.edu	37	7	141631588	141631588	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:141631588A>G	uc003vwv.1	-	6	581	c.384T>C	c.(382-384)TTT>TTC	p.F128F	CLEC5A_uc011krm.1_Silent_p.F105F|CLEC5A_uc003vww.1_Silent_p.F127F|CLEC5A_uc010lnq.1_Silent_p.F105F|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	128	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TTAAGCCAATAAAATACTTCT	0.388													25	79					0	0	0.005443	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673402	141673402	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:141673402A>T	uc003vwx.1	-	1	172	c.88T>A	c.(88-90)TTT>ATT	p.F30I		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	30	Helical; Name=1; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					TTGGTCAGAAACCCCACTGCA	0.468													20	44					0	0	0.001216	0	0
MGAM	8972	broad.mit.edu	37	7	141758027	141758027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:141758027C>T	uc003vwy.2	+	31	3772	c.3718C>T	c.(3718-3720)CCT>TCT	p.P1240S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1240	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGTGATGGTACCTTACTGGTC	0.443													128	260					0	0	0.003610	0	0
MGAM	8972	broad.mit.edu	37	7	141803166	141803166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:141803166C>T	uc003vwy.2	+	47	5477	c.5423C>T	c.(5422-5424)CCC>CTC	p.P1808L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1808	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGCAGTGTCCCCGTTACCAGT	0.458													11	20					0	0	0.001368	0	0
EPHB6	2051	broad.mit.edu	37	7	142563955	142563955	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:142563955G>C	uc011kst.1	+	9	2130	c.1343G>C	c.(1342-1344)GGG>GCG	p.G448A	EPHB6_uc011ksu.1_Missense_Mutation_p.G448A|EPHB6_uc003wbs.2_Missense_Mutation_p.G156A|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Missense_Mutation_p.G156A|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	448	Extracellular (Potential).|Fibronectin type-III 1.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GTGTTAGTGGGGGGACTCCGG	0.617													5	26					0	0	0.000443	0	0
TRPV6	55503	broad.mit.edu	37	7	142574331	142574331	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:142574331T>A	uc003wbx.1	-	6	808	c.592A>T	c.(592-594)ACA>TCA	p.T198S	TRPV6_uc003wbw.1_5'UTR|TRPV6_uc010lou.1_Missense_Mutation_p.T69S	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	198	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					TGTAACACTGTGTTTCCTGGG	0.567													33	62					0	0	0.005524	0	0
KEL	3792	broad.mit.edu	37	7	142651377	142651377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:142651377G>A	uc003wcb.2	-	8	1028	c.818C>T	c.(817-819)TCC>TTC	p.S273F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	273	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GATTGACAAGGAAGAGTGTTC	0.542													24	48					0	0	0.002780	0	0
CLCN1	1180	broad.mit.edu	37	7	143048913	143048913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:143048913C>T	uc003wcr.1	+	23	2909	c.2822C>T	c.(2821-2823)TCC>TTC	p.S941F	CLCN1_uc011ktc.1_Missense_Mutation_p.S553F	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	941	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CCCCCTCTCTCCCTGGCCCCA	0.657													18	33					0	0	0.004990	0	0
FAM131B	9715	broad.mit.edu	37	7	143053712	143053712	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:143053712C>T	uc003wct.2	-	6	2636	c.930G>A	c.(928-930)CGG>CGA	p.R310R	FAM131B_uc010loz.2_Silent_p.R278R|FAM131B_uc003wcu.3_Silent_p.R310R|FAM131B_uc010lpa.2_Silent_p.R338R	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	310											0	Melanoma(164;0.205)					CAGACACCTTCCGGCTGAGAG	0.587													54	114					0	0	0.003610	0	0
LOC441294	441294	broad.mit.edu	37	7	143270136	143270136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:143270136G>A	uc011kth.1	+	1	1247	c.1226G>A	c.(1225-1227)CGA>CAA	p.R409Q		NM_001008747	NP_001008747	A4D2H0	A4D2H0_HUMAN	hypothetical protein LOC441294	409											0	Melanoma(164;0.0903)					GAAAATTACCGAATAGAGGAA	0.378													20	73					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	7	143510154	143510154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:143510154G>A	uc011ktn.1	+	4	1825	c.1811G>A	c.(1810-1812)CGG>CAG	p.R604Q	uc011kto.1_RNA|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron|LOC154761_uc003wdl.2_3'UTR|LOC154761_uc003wdm.2_3'UTR	NM_001130026	NP_001123498			hypothetical protein LOC285966 isoform B																		AGGACTGAGCGGTCAGTCTCC	0.617													11	45					0	0	0.003163	0	0
OR6B1	135946	broad.mit.edu	37	7	143701556	143701556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:143701556C>T	uc003wdt.1	+	1	467	c.467C>T	c.(466-468)TCC>TTC	p.S156F		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TTTGGCATCTCCCTGGCGAAG	0.532													19	28					0	0	0.001216	0	0
OR2A5	393046	broad.mit.edu	37	7	143747760	143747760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:143747760G>A	uc011ktw.1	+	1	266	c.266G>A	c.(265-267)AGA>AAA	p.R89K		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					TTGAACAAGAGAAAAACAATC	0.438													36	109					0	0	0.001287	0	0
OR2A12	346525	broad.mit.edu	37	7	143793115	143793115	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:143793115G>A	uc011kty.1	+	1	915	c.915G>A	c.(913-915)TGG>TGA	p.W305*		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					GAGTCCTTTGGAAACAGAGAT	0.423													64	120					0	0	0.003610	0	0
OR2A2	442361	broad.mit.edu	37	7	143807210	143807210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:143807210G>A	uc011ktz.1	+	1	535	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CCTCTTCTGTGAAATTCTGTC	0.517													9	26					0	0	0.000443	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144059832	144059832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:144059832C>T	uc003wel.2	+	2	188	c.70C>T	c.(70-72)CCT>TCT	p.P24S	ARHGEF5_uc003wek.2_Missense_Mutation_p.P24S	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	24					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					CAGCATTATCCCTGAGGCTCC	0.547													21	201					0	0	0.002852	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144060386	144060387	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:144060386_144060387AG>TA	uc003wel.2	+	2	742_743	c.624_625AG>TA	c.(622-627)GAAGAG>GATAAG	p.208_209EE>DK	ARHGEF5_uc003wek.2_Missense_Mutation_p.208_209EE>DK	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	208_209					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					GGCAGGGGGAAGAGCTGCCACC	0.55													60	362					0	0	0.004672	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144061029	144061029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:144061029C>T	uc003wel.2	+	2	1385	c.1267C>T	c.(1267-1269)CCA>TCA	p.P423S	ARHGEF5_uc003wek.2_Missense_Mutation_p.P423S	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	423					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					TGACCTGTTTCCAGGTGCCTC	0.577													15	9					0	0	0.000958	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147926772	147926772	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:147926772C>T	uc003weu.1	+	20	3798	c.3282C>T	c.(3280-3282)ACC>ACT	p.T1094T		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1094	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGGGTGGCACCCGAGAGCCAT	0.453										HNSCC(39;0.1)			17	27					0	0	0.004990	0	0
C7orf33	202865	broad.mit.edu	37	7	148288132	148288132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:148288132C>T	uc003wew.2	+	1	476	c.115C>T	c.(115-117)CGC>TGC	p.R39C		NM_145304	NP_660347	Q8WU49	CG033_HUMAN	hypothetical protein LOC202865	39										central_nervous_system(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			GATTGACCTTCGCCTGAGTGG	0.557													24	58					0	0	0.002780	0	0
KRBA1	84626	broad.mit.edu	37	7	149420913	149420913	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:149420913C>T	uc003wfz.2	+	8	1260	c.861C>T	c.(859-861)CCC>CCT	p.P287P	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_5'UTR	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	287										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ACAGGCATCCCAGTCCCTCAG	0.612													23	41					0	0	0.002780	0	0
SSPO	23145	broad.mit.edu	37	7	149482056	149482056	+	Silent	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:149482056T>C	uc010lpk.2	+	20	2844	c.2844T>C	c.(2842-2844)CCT>CCC	p.P948P	SSPO_uc010lpl.1_Missense_Mutation_p.L284P	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	948					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ACTCCTGCCCTGCAGGCAGTA	0.617													5	16					0	0	0.000602	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389905	150389905	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:150389905G>A	uc003who.2	+	3	619	c.531G>A	c.(529-531)GGG>GGA	p.G177G	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	177						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CATGTGGTGGGCGAATCTGTG	0.473													27	40					0	0	0.001061	0	0
TMEM176B	28959	broad.mit.edu	37	7	150488648	150488649	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:150488648_150488649CC>TT	uc003wht.3	-	7	949_950	c.783_784GG>AA	c.(781-786)AGGGAG>AGAAAG	p.E262K	TMEM176B_uc003whu.3_Missense_Mutation_p.E262K|TMEM176B_uc003whv.3_Missense_Mutation_p.E225K|TMEM176B_uc003whw.3_Missense_Mutation_p.E262K	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	262					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGGTCTGCTCCCTAGAGGGCG	0.569													17	49					0	0	0.004672	0	0
NOS3	4846	broad.mit.edu	37	7	150698458	150698458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:150698458C>T	uc003wif.2	+	11	1669	c.1373C>T	c.(1372-1374)CCT>CTT	p.P458L	NOS3_uc011kuy.1_Missense_Mutation_p.P252L|NOS3_uc011kuz.1_Missense_Mutation_p.P458L|NOS3_uc011kva.1_Missense_Mutation_p.P458L|NOS3_uc011kvb.1_Missense_Mutation_p.P458L	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	458	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	AGCCTCACTCCTGTTTTCCAT	0.612													20	49					0	0	0.001523	0	0
CHPF2	54480	broad.mit.edu	37	7	150932643	150932643	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:150932643G>A	uc003wjr.1	+	2	2286	c.773G>A	c.(772-774)TGG>TAG	p.W258*	CHPF2_uc003wjq.1_Nonsense_Mutation_p.W250*|MIR671_hsa-mir-671|MI0003760_5'Flank	NM_019015	NP_061888	Q9P2E5	CHPF2_HUMAN	chondroitin polymerizing factor 2	258	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(1)	1						CCTGACGAGTGGCTTGGACGC	0.592													34	58					0	0	0.002836	0	0
ACTR3B	57180	broad.mit.edu	37	7	152520574	152520574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:152520574G>A	uc003wle.1	+	8	949	c.832G>A	c.(832-834)GGA>AGA	p.G278R	ACTR3B_uc003wlf.1_Missense_Mutation_p.G278R|ACTR3B_uc003wlg.1_Missense_Mutation_p.G190R|ACTR3B_uc011kvp.1_Missense_Mutation_p.G190R	NM_020445	NP_065178	Q9P1U1	ARP3B_HUMAN	actin-related protein 3-beta isoform 1	278					regulation of actin filament polymerization	cell projection|cytoplasm|cytoskeleton	actin binding|ATP binding				0		all_hematologic(28;0.0592)|Prostate(32;0.191)	OV - Ovarian serous cystadenocarcinoma(82;0.0287)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0434)		AAGATTCCTGGGACCTGAAAT	0.463													37	126					0	0	0.002522	0	0
ACTR3B	57180	broad.mit.edu	37	7	152551617	152551617	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:152551617C>T	uc003wle.1	+	12	1353	c.1236C>T	c.(1234-1236)CCC>CCT	p.P412P	ACTR3B_uc003wlf.1_Silent_p.P342P|ACTR3B_uc003wlg.1_Silent_p.P324P|ACTR3B_uc011kvp.1_Silent_p.P324P	NM_020445	NP_065178	Q9P1U1	ARP3B_HUMAN	actin-related protein 3-beta isoform 1	412					regulation of actin filament polymerization	cell projection|cytoplasm|cytoskeleton	actin binding|ATP binding				0		all_hematologic(28;0.0592)|Prostate(32;0.191)	OV - Ovarian serous cystadenocarcinoma(82;0.0287)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0434)		GCCACAACCCCGTCTTTGGAG	0.562													32	66					0	0	0.001485	0	0
PTPRN2	5799	broad.mit.edu	37	7	157926593	157926593	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:157926593C>T	uc003wno.2	-	9	1453	c.1332G>A	c.(1330-1332)GTG>GTA	p.V444V	PTPRN2_uc003wnp.2_Silent_p.V427V|PTPRN2_uc003wnq.2_Silent_p.V444V|PTPRN2_uc003wnr.2_Silent_p.V406V|PTPRN2_uc011kwa.1_Silent_p.V467V	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	444	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TGACGTTCTCCACTCCGGCAG	0.602													28	73					0	0	0.002096	0	0
PTPRN2	5799	broad.mit.edu	37	7	157985113	157985113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:157985113C>T	uc003wno.2	-	5	576	c.455G>A	c.(454-456)CGA>CAA	p.R152Q	PTPRN2_uc003wnp.2_Missense_Mutation_p.R135Q|PTPRN2_uc003wnq.2_Missense_Mutation_p.R152Q|PTPRN2_uc003wnr.2_Missense_Mutation_p.R114Q|PTPRN2_uc011kwa.1_Missense_Mutation_p.R175Q	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	152	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CAGGTGGCGTCGGAGGGCGTT	0.652													40	65					0	0	0.001951	0	0
VIPR2	7434	broad.mit.edu	37	7	158896490	158896490	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:158896490G>A	uc003woh.2	-	4	501	c.315C>T	c.(313-315)TTC>TTT	p.F105F	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	105	Extracellular (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		AGGCATCGACGAAATCTGGGA	0.498													25	48					0	0	0.005443	0	0
DLGAP2	9228	broad.mit.edu	37	8	1626440	1626440	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:1626440G>A	uc003wpl.2	+	9	2206	c.2109G>A	c.(2107-2109)CTG>CTA	p.L703L	DLGAP2_uc003wpm.2_Silent_p.L689L	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	782					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		ACCTGGAGCTGGAGGGGTTCC	0.602													17	33					0	0	0.004990	0	0
CSMD1	64478	broad.mit.edu	37	8	3200950	3200950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:3200950G>A	uc011kwk.1	-	23	3890	c.3500C>T	c.(3499-3501)TCC>TTC	p.S1167F	CSMD1_uc011kwj.1_Missense_Mutation_p.S559F|CSMD1_uc003wqe.2_Missense_Mutation_p.S323F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1167	Extracellular (Potential).|CUB 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGGACGTGAGGAACTGTCTTT	0.423													6	10					0	0	0.003080	0	0
DEFA6	1671	broad.mit.edu	37	8	6782385	6782385	+	Silent	SNP	C	T	T	rs61745836	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:6782385C>T	uc003wqt.2	-	2	299	c.258G>A	c.(256-258)GGG>GGA	p.G86G		NM_001926	NP_001917	Q01524	DEF6_HUMAN	defensin, alpha 6 preproprotein	86					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0			STAD - Stomach adenocarcinoma(24;0.0322)	COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		CAGTGCAGGTCCCATAGGAAT	0.428													32	45					0	0	0.003271	0	0
DEFA5	1670	broad.mit.edu	37	8	6914111	6914111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:6914111C>T	uc003wra.1	-	1	149	c.109G>A	c.(109-111)GAA>AAA	p.E37K		NM_021010	NP_066290	Q01523	DEF5_HUMAN	defensin, alpha 5 preproprotein	37					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		TGGTTGTCTTCCCCAGACTGC	0.527													18	56					0	0	0.001216	0	0
MSRA	4482	broad.mit.edu	37	8	10159066	10159066	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:10159066C>T	uc003wsx.2	+	4	551	c.354C>T	c.(352-354)GTC>GTT	p.V118V	MSRA_uc011kwx.1_Silent_p.V78V|MSRA_uc011kwy.1_Silent_p.V75V|MSRA_uc003wsz.2_Silent_p.V75V|MSRA_uc003wsy.2_Silent_p.V52V	NM_012331	NP_036463	Q9UJ68	MSRA_HUMAN	methionine sulfoxide reductase A isoform a	118					methionine metabolic process|protein modification process|response to oxidative stress	mitochondrion|nucleus	peptide-methionine-(S)-S-oxide reductase activity				0		Myeloproliferative disorder(644;0.178)			L-Methionine(DB00134)	ATGCAGAAGTCGTCCGAGTGG	0.428													25	57					0	0	0.001271	0	0
RP1L1	94137	broad.mit.edu	37	8	10466429	10466429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:10466429C>T	uc003wtc.2	-	4	5408	c.5179G>A	c.(5179-5181)GAG>AAG	p.E1727K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1727					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AGCCCTCCCTCAGCTCCCTGG	0.647													21	73					0	0	0.001523	0	0
RP1L1	94137	broad.mit.edu	37	8	10466652	10466652	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:10466652C>T	uc003wtc.2	-	4	5185	c.4956G>A	c.(4954-4956)GAG>GAA	p.E1652E		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1652					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACTCCTCCCCCTCCGCCTCCT	0.667													10	13					0	0	0.001855	0	0
USP17L2	377630	broad.mit.edu	37	8	11994778	11994778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:11994778C>T	uc003wvc.1	-	1	1492	c.1492G>A	c.(1492-1494)GAG>AAG	p.E498K	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	498					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						TTCACGGACTCCTGATCTGTC	0.512													6	103					0	0	0.001168	0	0
MSR1	4481	broad.mit.edu	37	8	16026222	16026222	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:16026222G>A	uc003wwz.2	-	4	573	c.375C>T	c.(373-375)ATC>ATT	p.I125I	MSR1_uc010lsu.2_Silent_p.I143I|MSR1_uc003wxa.2_Silent_p.I125I|MSR1_uc003wxb.2_Silent_p.I125I|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	125	Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		AAATATGCTGGATTCTCTTCT	0.388													39	98					0	0	0.001706	0	0
MTMR7	9108	broad.mit.edu	37	8	17188682	17188682	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:17188682T>C	uc003wxm.2	-	7	1081	c.842A>G	c.(841-843)AAC>AGC	p.N281S	MTMR7_uc003wxn.2_Missense_Mutation_p.N60S	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	281	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		CTGCAGACTGTTCCTCATGAC	0.378													20	45					0	0	0.002780	0	0
PDGFRL	5157	broad.mit.edu	37	8	17447010	17447010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:17447010C>T	uc003wxr.2	+	2	150	c.89C>T	c.(88-90)CCA>CTA	p.P30L		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	30						extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		AACAAGCGTCCAAAAGAACCA	0.423													50	93					0	0	0.003610	0	0
LPL	4023	broad.mit.edu	37	8	19805791	19805791	+	Silent	SNP	C	T	T	rs114726797	by1000genomes	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:19805791C>T	uc003wzk.3	+	2	559	c.189C>T	c.(187-189)TCC>TCT	p.S63S		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	63					fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	TAGCAGAGTCCGTGGCTACCT	0.502													14	39					0	0	0.002450	0	0
RHOBTB2	23221	broad.mit.edu	37	8	22864281	22864282	+	Missense_Mutation	DNP	CG	TT	TT	rs143117271		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:22864281_22864282CG>TT	uc003xcq.2	+	5	1060_1061	c.523_524CG>TT	c.(523-525)CGG>TTG	p.R175L	RHOBTB2_uc003xcp.2_Missense_Mutation_p.R197L|RHOBTB2_uc011kzp.1_Missense_Mutation_p.R182L|uc003xcr.2_RNA	NM_015178	NP_055993	Q9BYZ6	RHBT2_HUMAN	Rho-related BTB domain containing 2 isoform 3	175	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			ovary(1)|lung(1)	2		Prostate(55;0.0513)|Breast(100;0.214)		Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		AGAGAAGGGTCGGGAGGTGGCC	0.574													15	45					0	0	0.004672	0	0
ADAM28	10863	broad.mit.edu	37	8	24181423	24181424	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:24181423_24181424CC>TT	uc003xdy.2	+	9	880_881	c.797_798CC>TT	c.(796-798)ACC>ATT	p.T266I	ADAM28_uc003xdx.2_Missense_Mutation_p.T266I|ADAM28_uc011kzz.1_Missense_Mutation_p.T33I|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_5'Flank	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	266	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATAAAGATAACCCCAAATGCAA	0.381													4	6					0	0	0.004672	0	0
ADAM28	10863	broad.mit.edu	37	8	24193127	24193127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:24193127G>A	uc003xdy.2	+	14	1623	c.1540G>A	c.(1540-1542)GAG>AAG	p.E514K	ADAM28_uc003xdx.2_Missense_Mutation_p.E514K|ADAM28_uc011kzz.1_Missense_Mutation_p.E281K|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.E201K	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	514	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CACACTGCAGGAGCAGTGCAC	0.502													3	6					0	0	0.004672	0	0
ADAM7	8756	broad.mit.edu	37	8	24350607	24350607	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:24350607C>T	uc003xeb.2	+	16	1820	c.1707C>T	c.(1705-1707)CTC>CTT	p.L569L	ADAM7_uc003xec.2_Silent_p.L341L	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	569	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		TTTCCTCTCTCCTTGGAGAAG	0.398													21	35					0	0	0.005443	0	0
NEFM	4741	broad.mit.edu	37	8	24776021	24776021	+	Missense_Mutation	SNP	G	A	A	rs150229714		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:24776021G>A	uc003xed.3	+	3	2686	c.2653G>A	c.(2653-2655)GAG>AAG	p.E885K	NEFM_uc011lac.1_Missense_Mutation_p.E667K|NEFM_uc010lue.2_Missense_Mutation_p.E509K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	885	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		AAAGGTTGAAGAGCATGAAGA	0.428													35	88					0	0	0.003271	0	0
NEFL	4747	broad.mit.edu	37	8	24813304	24813304	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:24813304C>T	uc003xee.2	-	1	828	c.726G>A	c.(724-726)CAG>CAA	p.Q242Q		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	242	Rod.|Linker 12.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CCACGGAGATCTGCGCGTACT	0.577													11	24					0	0	0.001368	0	0
DOCK5	80005	broad.mit.edu	37	8	25240208	25240208	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:25240208T>C	uc003xeg.2	+	40	4182	c.4045T>C	c.(4045-4047)TAT>CAT	p.Y1349H	PPP2R2A_uc003xek.2_Missense_Mutation_p.Y138H|DOCK5_uc003xei.2_Missense_Mutation_p.Y919H|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	1349	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		GGCCTCATTTTATGAGAACAT	0.403													7	13					0	0	0.001984	0	0
EBF2	64641	broad.mit.edu	37	8	25708231	25708231	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:25708231G>A	uc003xes.1	-	15	1592	c.1575C>T	c.(1573-1575)ATC>ATT	p.I525I	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	525	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AAAATGGGAGGATGGAGGATG	0.493													9	39					0	0	0.000443	0	0
STMN4	81551	broad.mit.edu	37	8	27097515	27097515	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:27097515G>A	uc003xfk.2	-	5	597	c.483C>T	c.(481-483)GCC>GCT	p.A161A	STMN4_uc003xfj.2_Silent_p.A188A|STMN4_uc011lai.1_Silent_p.A188A|STMN4_uc011laj.1_Silent_p.A152A|STMN4_uc011lak.1_Silent_p.A188A|STMN4_uc010luo.2_Silent_p.A161A			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;	161	Potential.				intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		CCAACATGGCGGCGAGGTGGG	0.527													19	52					0	0	0.001882	0	0
PTK2B	2185	broad.mit.edu	37	8	27255255	27255255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:27255255C>T	uc003xfn.1	+	7	962	c.154C>T	c.(154-156)CCT>TCT	p.P52S	PTK2B_uc003xfo.1_Missense_Mutation_p.P52S|PTK2B_uc003xfp.1_Missense_Mutation_p.P52S|PTK2B_uc003xfq.1_Missense_Mutation_p.P52S	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	52	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		CAGCTTCAATCCTGGGAAAAA	0.517													17	54					0	0	0.004007	0	0
RBPMS	11030	broad.mit.edu	37	8	30332344	30332344	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:30332344A>G	uc003xic.1	+	2	781	c.116A>G	c.(115-117)GAG>GGG	p.E39G	RBPMS_uc003xid.1_Missense_Mutation_p.E39G|RBPMS_uc003xie.1_Missense_Mutation_p.E39G|RBPMS_uc003xif.1_5'Flank|RBPMS_uc011lba.1_Missense_Mutation_p.E39G|RBPMS_uc003xib.2_Missense_Mutation_p.E39G|RBPMS_uc010lvh.1_5'UTR	NM_006867	NP_006858	Q93062	RBPMS_HUMAN	RNA-binding protein with multiple splicing	39	RRM.				positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|nucleus	nucleotide binding|poly(A) RNA binding|protein binding|transcription coactivator activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.144)|Kidney(114;0.172)		AAACCTCGGGAGCTCTATCTG	0.403													39	111					0	0	0.003610	0	0
ADAM32	203102	broad.mit.edu	37	8	39027493	39027493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:39027493C>T	uc003xmt.3	+	10	1137	c.892C>T	c.(892-894)CGT>TGT	p.R298C	ADAM32_uc011lch.1_Missense_Mutation_p.R305C|ADAM32_uc003xmu.3_Missense_Mutation_p.R298C	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	298	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			GTGTATTACTCGTTATTCTGC	0.244													12	42					0	0	0.006122	0	0
ADAM32	203102	broad.mit.edu	37	8	39103614	39103614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:39103614C>T	uc003xmt.3	+	17	2076	c.1831C>T	c.(1831-1833)CGT>TGT	p.R611C	ADAM32_uc011lch.1_Missense_Mutation_p.R512C|ADAM32_uc003xmu.3_Missense_Mutation_p.R505C|ADAM32_uc003xmv.2_Missense_Mutation_p.R35C	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	611	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TTGTGTAAATCGTGAATGTGT	0.343													17	43					0	0	0.000958	0	0
ADAM18	8749	broad.mit.edu	37	8	39468132	39468132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:39468132G>A	uc003xni.2	+	6	429	c.429G>A	c.(427-429)ATG>ATA	p.M143I	ADAM18_uc003xnh.2_Missense_Mutation_p.M143I|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Missense_Mutation_p.M143I	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	143					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TTTATCAAATGAAAAATAATG	0.333													11	29					0	0	0.000673	0	0
ADAM18	8749	broad.mit.edu	37	8	39495126	39495126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:39495126C>T	uc003xni.2	+	9	731	c.731C>T	c.(730-732)TCC>TTC	p.S244F	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.S220F	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	244	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AACCAGATTTCCACCAGTGGG	0.363													4	18					0	0	0.001168	0	0
ADAM18	8749	broad.mit.edu	37	8	39525702	39525702	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:39525702G>A	uc003xni.2	+	14	1512	c.1512G>A	c.(1510-1512)AAG>AAA	p.K504K	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.K480K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	504	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AGTGTGCCAAGATATTTGGAA	0.388													15	52					0	0	0.003163	0	0
GINS4	84296	broad.mit.edu	37	8	41394708	41394708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:41394708C>T	uc003xnx.2	+	4	403	c.193C>T	c.(193-195)CTC>TTC	p.L65F	GINS4_uc003xny.2_Missense_Mutation_p.L65F	NM_032336	NP_115712	Q9BRT9	SLD5_HUMAN	GINS complex subunit 4	65					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	cytoplasm|nucleoplasm				skin(1)	1	Ovarian(28;0.014)|Colorectal(14;0.0202)|Lung SC(25;0.211)	all_lung(54;0.00732)|Lung NSC(58;0.0207)|Hepatocellular(245;0.0462)|Esophageal squamous(32;0.0844)	Colorectal(10;0.0014)|OV - Ovarian serous cystadenocarcinoma(14;0.00329)|LUSC - Lung squamous cell carcinoma(45;0.0137)|COAD - Colon adenocarcinoma(11;0.0147)			GGAAGAAAATCTCAGGAGAGC	0.458													10	18					0	0	0.000978	0	0
ANK1	286	broad.mit.edu	37	8	41577278	41577278	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:41577278C>T	uc003xok.2	-	10	1092	c.1008G>A	c.(1006-1008)CTG>CTA	p.L336L	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Silent_p.L336L|ANK1_uc003xoj.2_Silent_p.L336L|ANK1_uc003xol.2_Silent_p.L336L|ANK1_uc003xom.2_Silent_p.L369L	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	336	89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TCAGGTGGTCCAGGGTGATGT	0.602													37	81					0	0	0.004878	0	0
PCMTD1	115294	broad.mit.edu	37	8	52733157	52733157	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:52733157C>A	uc003xqx.3	-	6	1169	c.828G>T	c.(826-828)AGG>AGT	p.R276S	PCMTD1_uc011ldm.1_Missense_Mutation_p.R146S|PCMTD1_uc003xqw.3_Missense_Mutation_p.R276S|PCMTD1_uc011ldn.1_Missense_Mutation_p.R88S|PCMTD1_uc010lya.2_Missense_Mutation_p.R200S	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	276						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				TCTTTCTTTTCCTTTTGGGTG	0.368													11	178					4.93089e-13	9.69429e-13	0.002450	1	0
RP1	6101	broad.mit.edu	37	8	55537893	55537893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:55537893C>T	uc003xsd.1	+	4	1599	c.1451C>T	c.(1450-1452)TCA>TTA	p.S484L	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	484					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGACAGTTTTCATATAGTGAA	0.373													6	38					0	0	0.001168	0	0
RP1	6101	broad.mit.edu	37	8	55538703	55538703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:55538703C>T	uc003xsd.1	+	4	2409	c.2261C>T	c.(2260-2262)TCC>TTC	p.S754F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	754					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCCACGATTTCCAAGAATTTC	0.299													16	42					0	0	0.003163	0	0
RP1	6101	broad.mit.edu	37	8	55541724	55541724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:55541724C>T	uc003xsd.1	+	4	5430	c.5282C>T	c.(5281-5283)CCT>CTT	p.P1761L	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1761					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCTGAAAATCCTGGCATGTGT	0.433													8	24					0	0	0.003080	0	0
RP1	6101	broad.mit.edu	37	8	55542164	55542164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:55542164G>A	uc003xsd.1	+	4	5870	c.5722G>A	c.(5722-5724)GAT>AAT	p.D1908N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1908					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGACTCTTTGGATAAACTGTA	0.403													30	50					0	0	0.001786	0	0
MOS	4342	broad.mit.edu	37	8	57026421	57026421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:57026421G>A	uc011leb.1	-	1	121	c.121C>T	c.(121-123)CCT>TCT	p.P41S		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	41							ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			GGGGCCCGAGGAAGAGTGGCC	0.687													8	9					0	0	0.003080	0	0
TTPA	7274	broad.mit.edu	37	8	63973924	63973924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:63973924G>A	uc003xux.1	-	5	756	c.724C>T	c.(724-726)CCT>TCT	p.P242S		NM_000370	NP_000361	P49638	TTPA_HUMAN	tocopherol (alpha) transfer protein	242	CRAL-TRIO.				lipid metabolic process		transporter activity|vitamin E binding				0	Breast(64;0.0716)	all_cancers(86;0.145)|Lung NSC(129;0.0324)|all_lung(136;0.0593)|all_epithelial(80;0.123)			Vitamin E(DB00163)	TATTCCAGAGGAAGAATGTCT	0.388													19	40					0	0	0.001216	0	0
VCPIP1	80124	broad.mit.edu	37	8	67578269	67578269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:67578269G>A	uc003xwn.2	-	1	1184	c.925C>T	c.(925-927)CTC>TTC	p.L309F	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	309	OTU.				protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			ATGCCACTGAGGGAATCTAAC	0.473													30	74					0	0	0.002445	0	0
PREX2	80243	broad.mit.edu	37	8	69020509	69020509	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:69020509C>T	uc003xxv.1	+	24	2908	c.2881C>T	c.(2881-2883)CAG>TAG	p.Q961*	PREX2_uc011lez.1_Nonsense_Mutation_p.Q896*	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	961					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATTTGGTGTTCAGTTGGATAG	0.393													8	14					0	0	0.004482	0	0
SULF1	23213	broad.mit.edu	37	8	70570767	70570767	+	Silent	SNP	T	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:70570767T>G	uc010lza.1	+	23	3330	c.2613T>G	c.(2611-2613)GGT>GGG	p.G871G	SULF1_uc003xyd.2_Silent_p.G871G|SULF1_uc003xye.2_Silent_p.G871G|SULF1_uc003xyf.2_Silent_p.G871G|SULF1_uc003xyg.2_Silent_p.G871G|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_Missense_Mutation_p.V18G|SULF1_uc003xyj.1_Missense_Mutation_p.V18G	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	871					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GATGGGAAGGTTAATCAGCCC	0.438													21	41					0	0	0.003954	0	0
KCNB2	9312	broad.mit.edu	37	8	73480509	73480509	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:73480509G>A	uc003xzb.2	+	2	1128	c.540G>A	c.(538-540)TGG>TGA	p.W180*		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	180	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AGAAACTGTGGGACTTGCTGG	0.458													7	127					0	0	0.003080	0	0
HNF4G	3174	broad.mit.edu	37	8	76465357	76465357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:76465357G>A	uc003yaq.2	+	6	699	c.429G>A	c.(427-429)ATG>ATA	p.M143I	HNF4G_uc003yar.2_Missense_Mutation_p.M180I	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	143					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			GTGAATCTATGAAACAGCAGC	0.368													5	21					0	0	0.000602	0	0
CA2	760	broad.mit.edu	37	8	86385958	86385958	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:86385958T>C	uc003ydk.2	+	3	449	c.269T>C	c.(268-270)TTG>TCG	p.L90S		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	90					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	ACTTACAGATTGATTCAGTTT	0.284													17	34					0	0	0.001216	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87125949	87125949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:87125949C>T	uc003ydp.1	+	2	211	c.142C>T	c.(142-144)CAT>TAT	p.H48Y		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	48					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						CCTGAAAATTCATCTCCAGAC	0.323													35	106					0	0	0.005524	0	0
SLC26A7	115111	broad.mit.edu	37	8	92301414	92301414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:92301414G>A	uc003yex.2	+	4	522	c.244G>A	c.(244-246)GGG>AGG	p.G82R	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.G82R|SLC26A7_uc003yfa.2_Missense_Mutation_p.G82R	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	82	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TGGTTTATATGGGTCTCTGTT	0.403													54	96					0	0	0.003610	0	0
RUNX1T1	862	broad.mit.edu	37	8	93003996	93003996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:93003996C>T	uc003yfd.2	-	6	946	c.862G>A	c.(862-864)GGC>AGC	p.G288S	RUNX1T1_uc003yfc.1_Missense_Mutation_p.G261S|RUNX1T1_uc003yfe.1_Missense_Mutation_p.G251S|RUNX1T1_uc010mao.2_Missense_Mutation_p.G261S|RUNX1T1_uc011lgi.1_Missense_Mutation_p.G299S|RUNX1T1_uc010man.1_5'UTR|RUNX1T1_uc003yfb.1_Missense_Mutation_p.G251S	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	288					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TGAGGCAGGCCATTGGGCTGG	0.557													13	40					0	0	0.001855	0	0
KIAA1429	25962	broad.mit.edu	37	8	95518884	95518884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:95518884G>A	uc003ygo.1	-	16	3954	c.3941C>T	c.(3940-3942)TCC>TTC	p.S1314F	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1314					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TAGAGAATTGGAGAGCTGCTC	0.398													37	56					0	0	0.001485	0	0
INTS8	55656	broad.mit.edu	37	8	95850803	95850803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:95850803C>T	uc003yhb.2	+	8	1100	c.974C>T	c.(973-975)CCA>CTA	p.P325L	INTS8_uc003yha.1_Missense_Mutation_p.P325L|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.P152L	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	325	TPR 2.				snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					CAGTTGACTCCATATAGTCAA	0.303													196	432					0	0	0.003610	0	0
INTS8	55656	broad.mit.edu	37	8	95866068	95866068	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:95866068G>A	uc003yhb.2	+	14	1803	c.1677G>A	c.(1675-1677)CTG>CTA	p.L559L	INTS8_uc003yha.1_Silent_p.L559L|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Silent_p.L386L	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	559					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					GTGTTATCCTGGGAATTAAAG	0.338													197	364					0	0	0.003610	0	0
POP1	10940	broad.mit.edu	37	8	99170302	99170302	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:99170302T>A	uc003yij.3	+	16	2978	c.2878T>A	c.(2878-2880)TCC>ACC	p.S960T	POP1_uc011lgv.1_Missense_Mutation_p.S960T|POP1_uc003yik.2_Missense_Mutation_p.S960T	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	960					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			GTTGCACTGCTCCAGAACTCT	0.587													43	96					0	0	0.003610	0	0
VPS13B	157680	broad.mit.edu	37	8	100865745	100865745	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:100865745C>T	uc003yiv.2	+	56	10314	c.10203C>T	c.(10201-10203)GAC>GAT	p.D3401D	VPS13B_uc003yiw.2_Silent_p.D3376D	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3401					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TGTTTGATGACCTCACCCACC	0.507													22	66					0	0	0.003954	0	0
RGS22	26166	broad.mit.edu	37	8	101075804	101075805	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:101075804_101075805CC>TT	uc003yjb.1	-	8	1386_1387	c.1191_1192GG>AA	c.(1189-1194)AGGGCG>AGAACG	p.A398T	RGS22_uc003yja.1_Missense_Mutation_p.A217T|RGS22_uc003yjc.1_Missense_Mutation_p.A386T|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	398					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CACCAGTCCGCCCTGCTCTCTG	0.361													25	68					0	0	0.004672	0	0
ODF1	4956	broad.mit.edu	37	8	103573083	103573083	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:103573083C>T	uc003ykt.2	+	2	832	c.724C>T	c.(724-726)CGA>TGA	p.R242*		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	242					cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			CTGTGGAAGCCGATTTTCCTG	0.308													7	122					0	0	0.003080	0	0
DCAF13	25879	broad.mit.edu	37	8	104427482	104427482	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:104427482A>G	uc003yln.2	+	1	541	c.264A>G	c.(262-264)GAA>GAG	p.E88E	SLC25A32_uc003yll.2_5'Flank|SLC25A32_uc011lhr.1_5'Flank|DCAF13_uc003ylm.1_5'UTR|DCAF13_uc003ylo.2_5'UTR	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						CAGCTAAAGAACCGCCCCTTG	0.652													24	83					0	0	0.003330	0	0
LRP12	29967	broad.mit.edu	37	8	105503244	105503244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:105503244C>T	uc003yma.2	-	7	2332	c.2237G>A	c.(2236-2238)CGA>CAA	p.R746Q	LRP12_uc003ymb.2_Missense_Mutation_p.R727Q|LRP12_uc003ylz.2_Missense_Mutation_p.R152Q	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	746	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GGAACTTGATCGTCCTAATGT	0.458													17	48					0	0	0.001882	0	0
ABRA	137735	broad.mit.edu	37	8	107782250	107782250	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:107782250G>A	uc003ymm.3	-	1	223	c.169C>T	c.(169-171)CAG>TAG	p.Q57*		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	57					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			GGTGAGTCCTGGGTCCCTCCC	0.617													21	64					0	0	0.003954	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110456087	110456087	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:110456087A>G	uc003yne.2	+	37	4851	c.4747A>G	c.(4747-4749)ACA>GCA	p.T1583A		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1583	Extracellular (Potential).|IPT/TIG 8.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGAACTAATAACAATTATTGG	0.313										HNSCC(38;0.096)			18	47					0	0	0.001882	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110498933	110498933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:110498933G>A	uc003yne.2	+	59	9867	c.9763G>A	c.(9763-9765)GGG>AGG	p.G3255R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3255	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGCTGATGTTGGGATACTGAG	0.453										HNSCC(38;0.096)			7	14					0	0	0.001984	0	0
CSMD3	114788	broad.mit.edu	37	8	113267561	113267561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:113267561G>A	uc003ynu.2	-	62	10117	c.9958C>T	c.(9958-9960)CCT>TCT	p.P3320S	CSMD3_uc003yns.2_Missense_Mutation_p.P2522S|CSMD3_uc003ynt.2_Missense_Mutation_p.P3280S|CSMD3_uc011lhx.1_Missense_Mutation_p.P3151S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3320	Extracellular (Potential).|Sushi 26.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AATATGAAAGGAAAATTGCAG	0.413										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			10	19					0	0	0.000673	0	0
CSMD3	114788	broad.mit.edu	37	8	113323360	113323360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:113323360C>T	uc003ynu.2	-	50	7891	c.7732G>A	c.(7732-7734)GGA>AGA	p.G2578R	CSMD3_uc003yns.2_Missense_Mutation_p.G1780R|CSMD3_uc003ynt.2_Missense_Mutation_p.G2538R|CSMD3_uc011lhx.1_Missense_Mutation_p.G2474R|CSMD3_uc003ynw.1_Missense_Mutation_p.G289R	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2578	Extracellular (Potential).|Sushi 14.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATAATATATCCATGAGGTGGG	0.408										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	37					0	0	0.001855	0	0
CSMD3	114788	broad.mit.edu	37	8	113697886	113697886	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:113697886T>A	uc003ynu.2	-	15	2390	c.2231A>T	c.(2230-2232)AAT>ATT	p.N744I	CSMD3_uc003yns.2_Missense_Mutation_p.N16I|CSMD3_uc003ynt.2_Missense_Mutation_p.N704I|CSMD3_uc011lhx.1_Missense_Mutation_p.N640I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	744	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GCAATTTAAATTATTTCCATA	0.413										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			18	75					0	0	0.000958	0	0
Unknown	0	broad.mit.edu	37	8	125934332	125934332	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:125934332C>T	uc003yrn.1	-	1		c.24G>A								DQ572100																		TAGGAACAACCCCATGGATAC	0.398													4	6					0	0	0.000248	0	0
KIAA0196	9897	broad.mit.edu	37	8	126061263	126061263	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:126061263G>T	uc003yrt.2	-	19	2693	c.2364C>A	c.(2362-2364)AAC>AAA	p.N788K	KIAA0196_uc011lir.1_Missense_Mutation_p.N640K|KIAA0196_uc003yru.1_Missense_Mutation_p.N362K	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	788					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			TTCTTAGAAAGTTATTACACT	0.318													10	20					1.58986e-06	3.10463e-06	0.000673	1	0
ASAP1	50807	broad.mit.edu	37	8	131104224	131104224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:131104224G>A	uc003yta.1	-	24	2595	c.2567C>T	c.(2566-2568)CCT>CTT	p.P856L	ASAP1_uc003ysz.1_Missense_Mutation_p.P667L|ASAP1_uc011liw.1_Missense_Mutation_p.P849L	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	856	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						CTTACCCCAAGGAACTGCGCC	0.597													38	104					0	0	0.001706	0	0
ADCY8	114	broad.mit.edu	37	8	131792904	131792904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:131792904C>T	uc003ytd.3	-	18	3744	c.3488G>A	c.(3487-3489)GGA>GAA	p.G1163E	ADCY8_uc010mds.2_Missense_Mutation_p.G1032E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1163	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TTTGATTTTTCCTTCCTGTTC	0.512										HNSCC(32;0.087)			30	56					0	0	0.002836	0	0
TG	7038	broad.mit.edu	37	8	133885424	133885424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:133885424C>T	uc003ytw.2	+	5	637	c.596C>T	c.(595-597)ACC>ATC	p.T199I		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	199	Thyroglobulin type-1 3.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TTTGTCAACACCACAGACATG	0.527													5	30					0	0	0.000602	0	0
FAM135B	51059	broad.mit.edu	37	8	139145022	139145022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:139145022C>T	uc003yuy.2	-	20	4206	c.4035G>A	c.(4033-4035)ATG>ATA	p.M1345I	FAM135B_uc003yux.2_Missense_Mutation_p.M1246I|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1345										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GGTTGTTGATCATTTCTGCAT	0.502										HNSCC(54;0.14)			60	136					0	0	0.003610	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141460944	141460944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:141460944G>A	uc003yvj.2	-	2	663	c.529C>T	c.(529-531)CTT>TTT	p.L177F	TRAPPC9_uc003yvh.2_Missense_Mutation_p.L275F|TRAPPC9_uc003yvi.1_Missense_Mutation_p.L177F	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	177					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						ACACAGAGAAGGGGGATCTTA	0.532													7	23					0	0	0.001984	0	0
DENND3	22898	broad.mit.edu	37	8	142154307	142154307	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:142154307C>T	uc003yvy.2	+	5	722	c.444C>T	c.(442-444)TTC>TTT	p.F148F	DENND3_uc010mep.2_Silent_p.F161F	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	148	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TAAAAGATTTCGCTGCGAAGC	0.368													25	37					0	0	0.001061	0	0
FLJ43860	389690	broad.mit.edu	37	8	142482967	142482967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:142482967G>A	uc003ywi.2	-	15	1933	c.1852C>T	c.(1852-1854)CAC>TAC	p.H618Y	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	618							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TAGCCATTGTGGTTCAGGAAT	0.662													6	15					0	0	0.001984	0	0
ZC3H3	23144	broad.mit.edu	37	8	144620279	144620279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:144620279G>A	uc003yyd.2	-	2	1287	c.1258C>T	c.(1258-1260)CCA>TCA	p.P420S		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	420					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CCTACTGCTGGTCTGTCCCCC	0.627													17	47					0	0	0.000958	0	0
EPPK1	83481	broad.mit.edu	37	8	144942663	144942663	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:144942663T>C	uc003zaa.1	-	1	4772	c.4759A>G	c.(4759-4761)ATC>GTC	p.I1587V		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1587	Plectin 26.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCCTCTGGGATGCTCATCCTC	0.637													4	13					0	0	0.000248	0	0
EPPK1	83481	broad.mit.edu	37	8	144945385	144945385	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:144945385C>T	uc003zaa.1	-	1	2050	c.2037G>A	c.(2035-2037)GCG>GCA	p.A679A		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	679	Plectin 13.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACAGCAGCTTCGCGAACACAT	0.602													11	19					0	0	0.000978	0	0
PLEC	5339	broad.mit.edu	37	8	144995943	144995943	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:144995943G>A	uc003zaf.1	-	32	8627	c.8457C>T	c.(8455-8457)CTC>CTT	p.L2819L	PLEC_uc003zab.1_Silent_p.L2682L|PLEC_uc003zac.1_Silent_p.L2686L|PLEC_uc003zad.2_Silent_p.L2682L|PLEC_uc003zae.1_Silent_p.L2650L|PLEC_uc003zag.1_Silent_p.L2660L|PLEC_uc003zah.2_Silent_p.L2668L|PLEC_uc003zaj.2_Silent_p.L2709L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2819	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCCGCCGTGCGAGCTCGTCCA	0.667													15	26					0	0	0.006122	0	0
SPATC1	375686	broad.mit.edu	37	8	145095479	145095479	+	Silent	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:145095479C>A	uc011lkw.1	+	3	879	c.777C>A	c.(775-777)TCC>TCA	p.S259S	SPATC1_uc011lkx.1_Silent_p.S259S	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	259										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCCCACTCTCCACTGAGCCCC	0.622													15	46					1.00905e-13	1.98562e-13	0.001216	1	0
SPATC1	375686	broad.mit.edu	37	8	145095815	145095815	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:145095815C>T	uc011lkw.1	+	3	1215	c.1113C>T	c.(1111-1113)TCC>TCT	p.S371S	SPATC1_uc011lkx.1_Silent_p.S371S	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	371										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCATAATTCCCCAACCCAGA	0.567													13	23					0	0	0.002450	0	0
VPS28	51160	broad.mit.edu	37	8	145652322	145652322	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:145652322G>T	uc003zcr.1	-	1	60	c.7C>A	c.(7-9)CAT>AAT	p.H3N	VPS28_uc003zcs.1_Missense_Mutation_p.H3N|VPS28_uc003zct.1_Missense_Mutation_p.H3N	NM_016208	NP_057292	Q9UK41	VPS28_HUMAN	vacuolar protein sorting 28 isoform 1	3					cellular membrane organization|endosome transport|negative regulation of protein ubiquitination|protein transport	cytosol|late endosome membrane|plasma membrane	protein binding				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GGGATCCCATGAAACATCCTC	0.567													4	11					3.59834e-05	7.01724e-05	0.001168	1	0
GPT	2875	broad.mit.edu	37	8	145731980	145731981	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr8:145731980_145731981GG>AA	uc011lli.1	+	10	1385_1386	c.1228_1229GG>AA	c.(1228-1230)GGC>AAC	p.G410N	GPT_uc003zdh.3_Missense_Mutation_p.G410N|MFSD3_uc003zdi.1_5'Flank	NM_005309	NP_005300	P24298	ALAT1_HUMAN	glutamic pyruvate transaminase	410					gluconeogenesis	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|central_nervous_system(1)	2	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)		L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CCCAGTGCAGGGCGCCATGTAC	0.718													4	4					0	0	0.004672	0	0
VLDLR	7436	broad.mit.edu	37	9	2647525	2647525	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:2647525A>G	uc003zhk.1	+	12	2152	c.1755A>G	c.(1753-1755)GGA>GGG	p.G585G	VLDLR_uc003zhl.1_Silent_p.G585G|VLDLR_uc003zhm.1_RNA|VLDLR_uc003zhn.1_Silent_p.G544G	NM_003383	NP_003374	P98155	VLDLR_HUMAN	very low density lipoprotein receptor isoform a	585	Extracellular (Potential).|LDL-receptor class B 4.				cholesterol metabolic process|endocytosis|lipid transport|memory|very-low-density lipoprotein particle clearance	coated pit|integral to membrane|membrane fraction|plasma membrane|very-low-density lipoprotein particle	apolipoprotein binding|calcium ion binding|low-density lipoprotein receptor activity|very-low-density lipoprotein particle receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(50;0.0668)|Lung(218;0.123)		AAAAAGCAGGAATGAATGGAT	0.423													12	13					0	0	0.001368	0	0
GLIS3	169792	broad.mit.edu	37	9	3829391	3829391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:3829391C>T	uc003zhw.1	-	9	2304	c.2110G>A	c.(2110-2112)GAC>AAC	p.D704N	GLIS3_uc003zhx.1_Missense_Mutation_p.D859N|GLIS3_uc010mhf.1_Missense_Mutation_p.D253N|GLIS3_uc003zhv.1_RNA	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	704					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		ACTAGGCAGTCCTCAAACGAA	0.537													12	9					0	0	0.001368	0	0
FREM1	158326	broad.mit.edu	37	9	14770702	14770703	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:14770702_14770703GG>AA	uc003zlm.2	-	26	5549_5550	c.4959_4960CC>TT	c.(4957-4962)TCCCGC>TCTTGC	p.R1654C	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.R190C	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1654	CSPG 12.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TTCAACACGCGGGAAGTGATGT	0.47													12	5					0	0	0.004672	0	0
FREM1	158326	broad.mit.edu	37	9	14859208	14859208	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:14859208G>A	uc003zlm.2	-	4	1194	c.604C>T	c.(604-606)CAG>TAG	p.Q202*	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	202					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTGTGTGGCTGATCTCCACGA	0.517													16	21					0	0	0.006122	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971187	21971187	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:21971187G>A	uc003zpk.2	-	2	383	c.171C>T	c.(169-171)GCC>GCT	p.A57A	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.P113S	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	57	ANK 2.		A -> V (in pancreas carcinoma; somatic mutation; partial loss of CDK4 binding).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(14)|p.A57V(5)|p.A57P(4)|p.R58*(4)|p.M53_R58del(3)|p.M54fs*61(2)|p.R58fs*59(1)|p.R58fs*89(1)|p.V28_V51del(1)|p.A57_R58>V*(1)|p.R58fs*61(1)|p.A57fs*63(1)|p.G55fs*86(1)|p.A57A(1)|p.A57fs*62(1)|p.A57fs*85(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CCGCCACTCGGGCGCTGCCCA	0.682		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			33	18					0	0	0.002445	0	0
TAF1L	138474	broad.mit.edu	37	9	32632987	32632987	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:32632987C>A	uc003zrg.1	-	1	2681	c.2591G>T	c.(2590-2592)AGG>ATG	p.R864M	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	864					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GAGCTTTAGCCTCTTCCGGAT	0.463													44	107					1.83081e-24	3.6224e-24	0.003610	1	0
ARID3C	138715	broad.mit.edu	37	9	34622505	34622505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:34622505G>A	uc011lon.1	-	5	887	c.887C>T	c.(886-888)CCT>CTT	p.P296L	DCTN3_uc003zuw.1_5'Flank|DCTN3_uc003zux.1_5'Flank	NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	296	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		TGCCAGACAAGGGTTTGGAAT	0.572													31	55					0	0	0.004878	0	0
VCP	7415	broad.mit.edu	37	9	35065361	35065361	+	Missense_Mutation	SNP	G	A	A	rs121909330		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:35065361G>A	uc003zvy.2	-	5	852	c.463C>T	c.(463-465)CGT>TGT	p.R155C	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_5'UTR|VCP_uc010mki.1_Missense_Mutation_p.R110C	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	155			R -> C (in IBMPFD; also in one patient without evidence of Paget disease of the bone).|R -> H (in IBMPFD; strongly reduced affinity for ADP and increased affinity for ATP).|R -> P (in IBMPFD).		activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			ATCCCACCACGGACAAGAAAA	0.493													12	31					0	0	0.001855	0	0
STOML2	30968	broad.mit.edu	37	9	35100991	35100991	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:35100991G>A	uc003zwi.2	-	8	805	c.742C>T	c.(742-744)CTG>TTG	p.L248L	STOML2_uc003zwh.2_Silent_p.L139L|STOML2_uc003zwj.2_Silent_p.L139L|STOML2_uc011lou.1_Silent_p.L203L|STOML2_uc003zwk.2_Silent_p.L197L	NM_013442	NP_038470	Q9UJZ1	STML2_HUMAN	stomatin (EPB72)-like 2	248						cytoskeleton	receptor binding				0			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GCCTTCGCCAGAACTGCACTG	0.542													67	130					0	0	0.003610	0	0
TLN1	7094	broad.mit.edu	37	9	35706001	35706001	+	Silent	SNP	G	A	A	rs149087654		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:35706001G>A	uc003zxt.2	-	41	5823	c.5469C>T	c.(5467-5469)GTC>GTT	p.V1823V		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1823	Interaction with SYNM.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TGCCACCCACGACCCCAGCAG	0.617													33	54					0	0	0.002836	0	0
OR2S2	56656	broad.mit.edu	37	9	35958057	35958057	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:35958057G>A	uc011lpi.1	-	1	95	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_019897	NP_063950	Q9NQN1	OR2S1_HUMAN	olfactory receptor, family 2, subfamily S,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00613)|STAD - Stomach adenocarcinoma(86;0.194)			TCAGGAGAACGAACCCCATCA	0.537													19	30					0	0	0.001882	0	0
RNF38	152006	broad.mit.edu	37	9	36390535	36390535	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:36390535G>A	uc003zzh.2	-	2	282	c.91C>T	c.(91-93)CTG>TTG	p.L31L	RNF38_uc003zzi.2_Intron|RNF38_uc003zzj.2_5'UTR|RNF38_uc003zzk.2_Intron|RNF38_uc003zzl.2_Intron|RNF38_uc003zzm.2_5'UTR	NM_022781	NP_073618	Q9H0F5	RNF38_HUMAN	ring finger protein 38 isoform 1	31							zinc ion binding			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			AGAGGGAACAGGCTCTGAAGT	0.458													52	91					0	0	0.003610	0	0
PAX5	5079	broad.mit.edu	37	9	37015113	37015113	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:37015113T>A	uc003zzo.1	-	3	739	c.291A>T	c.(289-291)GAA>GAT	p.E97D	PAX5_uc011lpw.1_Missense_Mutation_p.E97D|PAX5_uc011lpx.1_Intron|PAX5_uc011lpy.1_5'UTR|PAX5_uc010mls.1_Missense_Mutation_p.E97D|PAX5_uc011lpz.1_Missense_Mutation_p.E97D|PAX5_uc011lqa.1_5'UTR|PAX5_uc010mlq.1_RNA|PAX5_uc011lqb.1_RNA|PAX5_uc010mlo.1_Missense_Mutation_p.E97D|PAX5_uc010mlp.1_Missense_Mutation_p.E97D|PAX5_uc011lqc.1_Missense_Mutation_p.E97D|PAX5_uc010mlr.1_Missense_Mutation_p.E97D|PAX5_uc011lqd.1_Intron|PAX5_uc011lqe.1_RNA|PAX5_uc011lqf.1_Intron|PAX5_uc011lqg.1_RNA	NM_016734	NP_057953	Q02548	PAX5_HUMAN	paired box 5	97	Paired.				cell differentiation|humoral immune response|nervous system development|organ morphogenesis|spermatogenesis|transcription from RNA polymerase II promoter	nucleus	DNA binding	p.?(32)	PAX5/JAK2(18)	haematopoietic_and_lymphoid_tissue(142)|lung(3)|central_nervous_system(2)	147		all_cancers(2;3.46e-10)|Acute lymphoblastic leukemia(2;7.09e-56)|all_hematologic(2;6.65e-44)		GBM - Glioblastoma multiforme(29;0.0108)		CAGCGATTTTTTCCACCACTT	0.507			T|Mis|D|F|S	IGH@|ETV6|PML|FOXP1|ZNF521|ELN	NHL|ALL|B-ALL								121	210					0	0	0.003610	0	0
ALDH1B1	219	broad.mit.edu	37	9	38396624	38396624	+	Silent	SNP	C	T	T	rs141592792		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:38396624C>T	uc004aay.2	+	2	991	c.879C>T	c.(877-879)ATC>ATT	p.I293I		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	293					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	GCCCCAGCATCGTGCTGGCCG	0.617													25	38					0	0	0.001512	0	0
Unknown	0	broad.mit.edu	37	9	38572032	38572032	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:38572032G>A	uc004abb.1	-	4		c.506C>T			uc010mmc.1_RNA|uc010mmd.1_Missense_Mutation_p.S133F|uc004abf.1_3'UTR|uc004abg.3_3'UTR					Homo sapiens mRNA for KIAA2015 protein.																		AAGTAGACGGGAGCAAGTGCT	0.323													22	33					0	0	0.003330	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627581	43627581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:43627581G>A	uc011lrb.1	-	4	1135	c.1106C>T	c.(1105-1107)TCA>TTA	p.S369L		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	369						integral to membrane					0						AGCATCCAATGATTTAGCCAA	0.443													10	343					0	0	0.000978	0	0
TRPM6	140803	broad.mit.edu	37	9	77343241	77343241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:77343241C>T	uc004ajl.1	-	38	6087	c.5849G>A	c.(5848-5850)GGA>GAA	p.G1950E	TRPM6_uc004ajk.1_Missense_Mutation_p.G1945E|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.G901E|TRPM6_uc010mpd.1_Missense_Mutation_p.G783E|TRPM6_uc010mpe.1_Missense_Mutation_p.G497E|TRPM6_uc004ajj.1_Missense_Mutation_p.G906E	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1950	ATP (By similarity).|Alpha-type protein kinase.|Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ATTGGCCGGTCCAAACACCAT	0.433													18	15					0	0	0.004990	0	0
VPS13A	23230	broad.mit.edu	37	9	79936480	79936480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:79936480C>T	uc004akr.2	+	44	5908	c.5648C>T	c.(5647-5649)TCC>TTC	p.S1883F	VPS13A_uc004akp.3_Missense_Mutation_p.S1883F|VPS13A_uc004akq.3_Missense_Mutation_p.S1883F|VPS13A_uc004aks.2_Missense_Mutation_p.S1844F|VPS13A_uc004akt.2_Missense_Mutation_p.S223F	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1883					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						ATTTTAAATTCCCTTGGACTT	0.338													18	13					0	0	0.006122	0	0
GKAP1	80318	broad.mit.edu	37	9	86414158	86414159	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:86414158_86414159GG>TT	uc004amy.2	-	4	797_798	c.301_302CC>AA	c.(301-303)CCA>AAA	p.P101K	GKAP1_uc004amz.2_Missense_Mutation_p.P101K|GKAP1_uc011lsu.1_RNA	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	101					signal transduction	Golgi apparatus					0						CTTCTGTACTGGGTTTGACAAT	0.361													8	155					0	0	0.004672	0	0
KIF27	55582	broad.mit.edu	37	9	86465139	86465139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:86465139C>T	uc004ana.2	-	16	3575	c.3431G>A	c.(3430-3432)CGG>CAG	p.R1144Q	KIF27_uc010mpw.2_Missense_Mutation_p.R1078Q|KIF27_uc010mpx.2_Missense_Mutation_p.R1047Q	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	1144	Potential.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						CATATTATCCCGTTCCAGAAC	0.388													40	29					0	0	0.005524	0	0
HNRNPK	3190	broad.mit.edu	37	9	86586929	86586929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:86586929G>A	uc004ang.3	-	11	1045	c.821C>T	c.(820-822)CCT>CTT	p.P274L	HNRNPK_uc011lsw.1_Missense_Mutation_p.P34L|HNRNPK_uc004and.3_Missense_Mutation_p.P34L|HNRNPK_uc004ank.3_Missense_Mutation_p.P274L|HNRNPK_uc004anf.3_Missense_Mutation_p.P274L|HNRNPK_uc004anh.3_Missense_Mutation_p.P250L|HNRNPK_uc011lsx.1_Missense_Mutation_p.P250L|HNRNPK_uc004ani.3_Missense_Mutation_p.P274L|HNRNPK_uc004anj.3_Missense_Mutation_p.P274L|HNRNPK_uc004ann.3_Missense_Mutation_p.P250L|HNRNPK_uc004anl.3_Missense_Mutation_p.P274L|HNRNPK_uc004anm.3_Missense_Mutation_p.P274L|uc004ano.1_5'Flank|MIR7-1_hsa-mir-7-1|MI0000263_5'Flank	NM_031262	NP_112552	P61978	HNRPK_HUMAN	heterogeneous nuclear ribonucleoprotein K	274	5 X 4 AA repeats of G-X-G-G.|2 X 6 AA approximate repeats.|Necessary for interaction with DDX1.|2 X 22 AA approximate repeats.|Interaction with ZIK1 (By similarity).				interspecies interaction between organisms|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of receptor-mediated endocytosis|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of low-density lipoprotein particle clearance|signal transduction	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nuclear chromatin|nucleoplasm	protein binding|RNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|single-stranded DNA binding			skin(1)	1						TCTAGATGGAGGCATGGGACG	0.597													30	32					0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	9	90746939	90746939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:90746939G>A	uc011lti.1	-	4	1042	c.1013C>T	c.(1012-1014)TCA>TTA	p.S338L						SubName: Full=cDNA FLJ59639;																		GGGTGTGGATGAAATAAAGGG	0.552													104	75					0	0	0.003610	0	0
ROR2	4920	broad.mit.edu	37	9	94486784	94486784	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:94486784G>A	uc004arj.1	-	9	2191	c.1992C>T	c.(1990-1992)ATC>ATT	p.I664I	ROR2_uc004ari.1_Silent_p.I524I	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	664	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						TGCCGTACATGATGGCCTCTG	0.592													16	17					0	0	0.004990	0	0
ROR2	4920	broad.mit.edu	37	9	94486827	94486827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:94486827C>T	uc004arj.1	-	9	2148	c.1949G>A	c.(1948-1950)GGG>GAG	p.G650E	ROR2_uc004ari.1_Missense_Mutation_p.G510E	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	650	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CAGCGAGTTCCCCAGCAGCTT	0.572													17	21					0	0	0.000958	0	0
ROR2	4920	broad.mit.edu	37	9	94487000	94487000	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:94487000G>A	uc004arj.1	-	9	1975	c.1776C>T	c.(1774-1776)TTC>TTT	p.F592F	ROR2_uc004ari.1_Silent_p.F452F	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	592	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CAAGGTGCACGAAGTCGGGGG	0.637													22	8					0	0	0.001523	0	0
FBP2	8789	broad.mit.edu	37	9	97321385	97321385	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:97321385C>T	uc004auv.2	-	7	922	c.855G>A	c.(853-855)GTG>GTA	p.V285V	uc004aus.1_RNA|uc004aut.1_RNA|uc004auu.2_RNA	NM_003837	NP_003828	O00757	F16P2_HUMAN	fructose-1,6-bisphosphatase 2	285					fructose metabolic process|gluconeogenesis	cytosol	fructose 1,6-bisphosphate 1-phosphatase activity|fructose-2,6-bisphosphate 2-phosphatase activity|metal ion binding				0		Acute lymphoblastic leukemia(62;0.136)				TGATGTAGGCCACGGGATTGC	0.587													23	21					0	0	0.003330	0	0
OR13C2	392376	broad.mit.edu	37	9	107367647	107367647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:107367647C>T	uc011lvq.1	-	1	262	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTCTTTCTTTCTGAAAGGAAG	0.517													19	15					0	0	0.004656	0	0
SVEP1	79987	broad.mit.edu	37	9	113173840	113173840	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:113173840A>C	uc010mtz.2	-	37	6488	c.6151T>G	c.(6151-6153)TAC>GAC	p.Y2051D	SVEP1_uc010mty.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2051	Sushi 11.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GCTAGGCTGTAACCATCAGAG	0.537													10	13					0	0	0.000443	0	0
RNF183	138065	broad.mit.edu	37	9	116060012	116060012	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:116060012C>T	uc004bgz.2	-	2	571	c.453G>A	c.(451-453)TTG>TTA	p.L151L	RNF183_uc004bha.2_Silent_p.L151L	NM_145051	NP_659488	Q96D59	RN183_HUMAN	ring finger protein 183	151						integral to membrane	zinc ion binding				0						AACACTCCCTCAAAGAGTGGT	0.602													26	20					0	0	0.001512	0	0
RGS3	5998	broad.mit.edu	37	9	116246496	116246496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:116246496C>T	uc004bhq.2	+	7	813	c.604C>T	c.(604-606)CAC>TAC	p.H202Y	RGS3_uc004bhr.2_Missense_Mutation_p.H90Y|RGS3_uc004bhs.2_Missense_Mutation_p.H92Y	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	202	C2.				inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						CCCGGCTTTCCACGAGCACTT	0.483													42	36					0	0	0.003610	0	0
TNFSF15	9966	broad.mit.edu	37	9	117553092	117553092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:117553092C>T	uc004bjh.2	-	4	512	c.396G>A	c.(394-396)ATG>ATA	p.M132I	TNFSF15_uc004bjg.2_Missense_Mutation_p.M73I	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	132	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						TGGTATAGTTCATTCGGTTCT	0.478													21	23					0	0	0.001882	0	0
TNFSF8	944	broad.mit.edu	37	9	117666403	117666403	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:117666403C>T	uc004bji.1	-	4	700	c.513G>A	c.(511-513)CAG>CAA	p.Q171Q		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	171	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						TCACCAGGGCCTGTTTTTTGA	0.423													32	34					0	0	0.002096	0	0
TNC	3371	broad.mit.edu	37	9	117808887	117808887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:117808887C>T	uc004bjj.3	-	17	5289	c.4927G>A	c.(4927-4929)GAT>AAT	p.D1643N	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1643	Fibronectin type-III 12.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						ACCCCTTCATCAGCTGTCCAG	0.502													28	22					0	0	0.001271	0	0
PAPPA	5069	broad.mit.edu	37	9	118949766	118949766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:118949766G>A	uc004bjn.2	+	2	1130	c.749G>A	c.(748-750)CGG>CAG	p.R250Q	PAPPA_uc011lxp.1_Missense_Mutation_p.R43Q|PAPPA_uc011lxq.1_Missense_Mutation_p.R43Q	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	250					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CACAACTACCGGGGCTACATC	0.572													38	35					0	0	0.001485	0	0
TLR4	7099	broad.mit.edu	37	9	120476461	120476461	+	Silent	SNP	G	A	A	rs141222130		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:120476461G>A	uc004bjz.2	+	3	2346	c.2055G>A	c.(2053-2055)GAG>GAA	p.E685E	TLR4_uc004bka.2_Silent_p.E645E|TLR4_uc004bkb.2_Silent_p.E485E	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	685	Cytoplasmic (Potential).|TIR.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GCCAGGATGAGGACTGGGTAA	0.433													14	9					0	0	0.002450	0	0
OR1N1	138883	broad.mit.edu	37	9	125289540	125289540	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:125289540G>A	uc004bmn.1	-	1	33	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						TTCCTCGGAGGAAAAATTCAG	0.473													7	7					0	0	0.001984	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377496	125377496	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:125377496C>T	uc011lyy.1	+	1	480	c.480C>T	c.(478-480)ACC>ACT	p.T160T		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGCTGCATACCTTTCTCATAG	0.498													26	18					0	0	0.005443	0	0
OR1K1	392392	broad.mit.edu	37	9	125562894	125562894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:125562894G>A	uc011lze.1	+	1	493	c.493G>A	c.(493-495)GCT>ACT	p.A165T		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCTGCTCATGGCTCGCTTGTC	0.602													26	24					0	0	0.001786	0	0
CERCAM	51148	broad.mit.edu	37	9	131186786	131186786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:131186786C>T	uc004buz.3	+	5	1057	c.659C>T	c.(658-660)TCC>TTC	p.S220F	CERCAM_uc004buy.1_Missense_Mutation_p.S142F|CERCAM_uc010mxz.2_Missense_Mutation_p.S142F|CERCAM_uc010mya.1_Missense_Mutation_p.S61F	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1	220					cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane				pancreas(1)	1						TTCCTTGCATCCCTGCGGGCT	0.622													29	16					0	0	0.005443	0	0
WDR34	89891	broad.mit.edu	37	9	131396564	131396564	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:131396564A>T	uc004bvq.1	-	8	1437	c.1313T>A	c.(1312-1314)CTG>CAG	p.L438Q	WDR34_uc004bvs.1_Missense_Mutation_p.L429Q|WDR34_uc004bvr.1_Missense_Mutation_p.L410Q	NM_052844	NP_443076	Q96EX3	WDR34_HUMAN	WD repeat domain 34	438	WD 4.					cytoplasm				central_nervous_system(2)|skin(1)	3						CACAGCAAACAGATACTTGAG	0.597													39	29					0	0	0.002522	0	0
BAT2L1	84726	broad.mit.edu	37	9	134321958	134321958	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:134321958C>G	uc004can.3	+	6	839	c.784C>G	c.(784-786)CGA>GGA	p.R262G	BAT2L1_uc010mzj.1_5'Flank|BAT2L1_uc004cam.1_Missense_Mutation_p.R262G	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	262							protein binding				0						TCAGCCTGTCCGAAAAGGGGC	0.537													10	12					0	0	0.000673	0	0
TSC1	7248	broad.mit.edu	37	9	135804225	135804225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:135804225G>A	uc004cca.2	-	3	269	c.35C>T	c.(34-36)GCC>GTC	p.A12V	TSC1_uc004ccb.3_Missense_Mutation_p.A12V|TSC1_uc011mcq.1_Missense_Mutation_p.A12V|TSC1_uc011mcr.1_Intron|TSC1_uc011mcs.1_5'UTR|TSC1_uc004ccc.1_Missense_Mutation_p.A12V|TSC1_uc004ccd.2_Missense_Mutation_p.A12V|TSC1_uc004cce.1_Missense_Mutation_p.A12V	NM_000368	NP_000359	Q92574	TSC1_HUMAN	tuberous sclerosis 1 protein isoform 1	12					activation of Rho GTPase activity|cell cycle arrest|cell-matrix adhesion|insulin receptor signaling pathway|negative regulation of cell proliferation|negative regulation of protein ubiquitination|negative regulation of TOR signaling cascade|negative regulation of translation|positive regulation of focal adhesion assembly|regulation of phosphoprotein phosphatase activity|regulation of stress fiber assembly|rRNA export from nucleus	cell cortex|lamellipodium|membrane|TSC1-TSC2 complex	chaperone binding|protein N-terminus binding	p.A12A(1)		lung(4)|central_nervous_system(3)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|urinary_tract(1)|skin(1)|ovary(1)|bone(1)	14				OV - Ovarian serous cystadenocarcinoma(145;4.32e-08)|Epithelial(140;2.72e-06)		GTCCAGCATGGCAAGAAGCTC	0.507			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				28	17					0	0	0.001512	0	0
GFI1B	8328	broad.mit.edu	37	9	135862084	135862084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:135862084G>A	uc004ccg.2	+	2	170	c.19G>A	c.(19-21)GTG>ATG	p.V7M	GFI1B_uc010mzy.2_Missense_Mutation_p.V7M	NM_004188	NP_004179	Q5VTD9	GFI1B_HUMAN	growth factor independent 1B transcription	7	Mediates repression of transcription.				cell proliferation|chromatin modification|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;9.04e-07)|Epithelial(140;1.17e-05)		CTCCTTCCTGGTGAAGAGCAA	0.597													5	5					0	0	0.001984	0	0
GPSM1	26086	broad.mit.edu	37	9	139252515	139252516	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:139252515_139252516GG>AT	uc004chd.2	+	14	2091_2092	c.1871_1872GG>AT	c.(1870-1872)CGG>CAT	p.R624H	GPSM1_uc011mdu.1_Missense_Mutation_p.R115H|GPSM1_uc004che.2_Missense_Mutation_p.R115H	NM_001145638	NP_001139110	Q86YR5	GPSM1_HUMAN	G-protein signaling modulator 1 (AGS3-like, C.	624					cell differentiation|nervous system development|signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|plasma membrane	binding|GTPase activator activity				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.39e-06)|Epithelial(140;3.24e-06)		GTACTGCCCCGGGGCCCTACCA	0.688													16	15					0	0	0.004672	0	0
SEC16A	9919	broad.mit.edu	37	9	139371701	139371701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:139371701G>A	uc004chx.2	-	3	676	c.367C>T	c.(367-369)CCG>TCG	p.P123S	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Missense_Mutation_p.P123S|SEC16A_uc010nbn.2_Missense_Mutation_p.P123S|SEC16A_uc010nbo.1_Missense_Mutation_p.P123S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CCAGAAAACGGACTGGCATGT	0.582													41	40					0	0	0.001485	0	0
FAM166A	401565	broad.mit.edu	37	9	140139814	140139814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:140139814C>T	uc004cmi.1	-	3	522	c.467G>A	c.(466-468)GGG>GAG	p.G156E		NM_001001710	NP_001001710	Q6J272	F166A_HUMAN	hypothetical protein LOC401565	156										ovary(1)	1						GGCCTCTTCCCCGTATACTGG	0.662													35	22					0	0	0.003271	0	0
EXD3	54932	broad.mit.edu	37	9	140267934	140267934	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:140267934T>A	uc004cmp.2	-	4	434	c.238A>T	c.(238-240)ATC>TTC	p.I80F	C9orf167_uc011mew.1_Intron|EXD3_uc010ncg.1_Missense_Mutation_p.I19F|EXD3_uc004cmr.2_Missense_Mutation_p.I19F|EXD3_uc004cms.2_Missense_Mutation_p.I80F	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	80					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						TGGTGGGAGATCCAGGCCGCC	0.697													7	6					0	0	0.001984	0	0
CACNA1B	774	broad.mit.edu	37	9	140967990	140967990	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:140967990G>A	uc004cog.2	+	32	4870	c.4725G>A	c.(4723-4725)CTG>CTA	p.L1575L	CACNA1B_uc004coi.2_Silent_p.L787L|CACNA1B_uc004cok.1_5'Flank|CACNA1B_uc010ncp.1_5'Flank	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1575	Helical; Name=S4 of repeat IV; (Potential).|IV.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CTGCGCGGCTGATCAAGCTGC	0.577													7	75					0	0	0.000443	0	0
CSF2RA	1438	broad.mit.edu	37	X	1404810	1404810	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:1404810C>T	uc010nct.2	+	5	538	c.216C>T	c.(214-216)CCC>CCT	p.P72P	CSF2RA_uc011mhb.1_Silent_p.P72P|CSF2RA_uc004cpq.2_Silent_p.P72P|CSF2RA_uc004cpn.2_Silent_p.P72P|CSF2RA_uc004cpo.2_Silent_p.P72P|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Silent_p.P72P|CSF2RA_uc010ncv.2_Silent_p.P72P|CSF2RA_uc004cpr.2_Silent_p.P72P	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	72	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	TCGTGGAACCCAGGGTGAGAC	0.408													77	175					0	0	0.003610	0	0
CSF2RA	1438	broad.mit.edu	37	X	1424358	1424358	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:1424358C>T	uc010nct.2	+	13	1385	c.1063C>T	c.(1063-1065)CTG>TTG	p.L355L	CSF2RA_uc011mhb.1_Silent_p.L355L|CSF2RA_uc004cpq.2_Silent_p.G222G|CSF2RA_uc004cpn.2_Silent_p.L355L|CSF2RA_uc004cpo.2_Silent_p.L355L|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Silent_p.L222L|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_Silent_p.L389L|CSF2RA_uc004cpr.2_Silent_p.G322G	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	355	Cytoplasmic (Potential).|Box 1 motif.					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GATACAGCGGCTGTTCCCGCC	0.537													40	78					0	0	0.001951	0	0
ARSF	416	broad.mit.edu	37	X	3030424	3030424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:3030424G>A	uc004cre.1	+	11	1821	c.1600G>A	c.(1600-1602)GTG>ATG	p.V534M	ARSF_uc004crf.1_Missense_Mutation_p.V534M	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	534						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GATTAAAAAGGTGGCCAACGC	0.567													24	16					0	0	0.003330	0	0
MXRA5	25878	broad.mit.edu	37	X	3229527	3229527	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:3229527C>T	uc004crg.3	-	7	6874	c.6717G>A	c.(6715-6717)GTG>GTA	p.V2239V		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2239	Ig-like C2-type 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CCGGTTTCATCACCACATCCA	0.517													46	19					0	0	0.003610	0	0
MXRA5	25878	broad.mit.edu	37	X	3241350	3241350	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:3241350C>T	uc004crg.3	-	5	2533	c.2376G>A	c.(2374-2376)GGG>GGA	p.G792G		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	792						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGAGATTTTTCCCACGGACTT	0.453													19	12					0	0	0.001216	0	0
MXRA5	25878	broad.mit.edu	37	X	3242170	3242170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:3242170G>A	uc004crg.3	-	5	1713	c.1556C>T	c.(1555-1557)TCC>TTC	p.S519F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	519	Ig-like C2-type 1.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TTTCAGGATGGAGCCATCTGG	0.537													14	15					0	0	0.003163	0	0
MXRA5	25878	broad.mit.edu	37	X	3248158	3248158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:3248158G>A	uc004crg.3	-	4	767	c.610C>T	c.(610-612)CGG>TGG	p.R204W		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	204	LRR 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGCATGTTCCGAAGCATGCTG	0.463													12	6					0	0	0.001368	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811248	5811248	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:5811248G>A	uc010ndh.2	-	6	2562	c.2061C>T	c.(2059-2061)TTC>TTT	p.F687F	NLGN4X_uc004crp.2_Silent_p.F707F|NLGN4X_uc004crq.2_Silent_p.F687F|NLGN4X_uc010ndi.2_Silent_p.F724F|NLGN4X_uc004crr.2_Silent_p.F687F|NLGN4X_uc010ndj.2_Silent_p.F687F	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	687	Helical; (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AGATGTTGAGGAAGAGGAGCG	0.507													47	27					0	0	0.003610	0	0
ARHGAP6	395	broad.mit.edu	37	X	11204449	11204449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:11204449C>T	uc004cup.1	-	5	2053	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.E394K|ARHGAP6_uc004cum.1_Missense_Mutation_p.E191K|ARHGAP6_uc004cun.1_Missense_Mutation_p.E214K|ARHGAP6_uc010neb.1_Missense_Mutation_p.E216K|ARHGAP6_uc011mif.1_Missense_Mutation_p.E191K	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	394					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						CTGGCTTTTTCCTTTTTACTT	0.438													53	23					0	0	0.003610	0	0
NHS	4810	broad.mit.edu	37	X	17710468	17710468	+	Silent	SNP	G	A	A	rs139131486		TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:17710468G>A	uc004cxx.2	+	3	1070	c.732G>A	c.(730-732)CGG>CGA	p.R244R	NHS_uc011mix.1_Silent_p.R244R|NHS_uc004cxy.2_Silent_p.R67R|NHS_uc004cxz.2_Silent_p.R67R|NHS_uc004cya.2_5'UTR	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	244						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					ACCGGAGCCGGAGCGATCGCC	0.522													52	17					0	0	0.003610	0	0
RPS6KA3	6197	broad.mit.edu	37	X	20252888	20252888	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:20252888A>G	uc004czu.2	-	2	114	c.114T>C	c.(112-114)ATT>ATC	p.I38I	RPS6KA3_uc004czv.2_Silent_p.I26I|RPS6KA3_uc011mjl.1_Silent_p.I10I|RPS6KA3_uc011mjm.1_Silent_p.I10I	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	38					axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						TTTGTGGGTTAATCTCCTCCT	0.343													36	15					0	0	0.002222	0	0
HDAC6	10013	broad.mit.edu	37	X	48681152	48681152	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:48681152C>T	uc011mmi.1	+	24	2555	c.2460C>T	c.(2458-2460)ATC>ATT	p.I820I	HDAC6_uc004dks.1_Silent_p.I820I|HDAC6_uc010nig.1_Silent_p.I668I|HDAC6_uc004dkt.1_Silent_p.I820I|HDAC6_uc011mmk.1_Silent_p.I801I|HDAC6_uc004dkv.1_Silent_p.I468I|HDAC6_uc004dkw.1_Silent_p.I468I|HDAC6_uc004dkx.1_Silent_p.I183I	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	820					aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	TGGCCTCAATCACTGAGACCA	0.627													20	9					0	0	0.001216	0	0
CCNB3	85417	broad.mit.edu	37	X	50053951	50053951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:50053951G>A	uc004dox.3	+	6	3080	c.2782G>A	c.(2782-2784)GAA>AAA	p.E928K	CCNB3_uc004doy.2_Missense_Mutation_p.E928K|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	928					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AGTCCTCTTCGAAGATATGAT	0.468													13	10					0	0	0.004007	0	0
SSX8	280659	broad.mit.edu	37	X	52654604	52654604	+	RNA	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:52654604A>G	uc011moa.1	+	3		c.406A>G			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GAAAAGATGAAATACTCGGAG	0.378													31	5					0	0	0.003271	0	0
SSX8	280659	broad.mit.edu	37	X	52659323	52659323	+	RNA	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:52659323C>T	uc011moa.1	+	7		c.820C>T			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						TTATAAAGATCATGCCCAAGA	0.348													87	47					0	0	0.003610	0	0
SSX8	280659	broad.mit.edu	37	X	52659354	52659354	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:52659354G>A	uc011moa.1	+	7		c.851G>A			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GGAAGGAAATGATTCGAAGGG	0.393													79	42					0	0	0.003610	0	0
SSX7	280658	broad.mit.edu	37	X	52681933	52681933	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:52681933G>A	uc004dqx.1	-	3	330	c.171C>T	c.(169-171)GCC>GCT	p.A57A		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	57	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					GTTTAGTCATGGCCTCATACT	0.408													39	22					0	0	0.004878	0	0
FAM120C	54954	broad.mit.edu	37	X	54177717	54177717	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:54177717G>A	uc004dsz.3	-	4	1202	c.1119C>T	c.(1117-1119)AAC>AAT	p.N373N	FAM120C_uc011moh.1_Silent_p.N373N	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	373										ovary(1)|central_nervous_system(1)	2						CTACATCCAGGTTTGAGGGAT	0.468													35	13					0	0	0.005524	0	0
ITIH5L	347365	broad.mit.edu	37	X	54783974	54783974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:54783974G>A	uc004dtj.2	-	8	2563	c.2533C>T	c.(2533-2535)CTC>TTC	p.L845F		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	845	Pro-rich.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TTGGACAAGAGGATTCCAGGC	0.498													31	17					0	0	0.002096	0	0
KLF8	11279	broad.mit.edu	37	X	56291640	56291640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:56291640C>T	uc004dur.2	+	3	1055	c.109C>T	c.(109-111)CCC>TCC	p.P37S	KLF8_uc010nkg.2_Missense_Mutation_p.P32S|KLF8_uc011mop.1_Missense_Mutation_p.P37S|KLF8_uc010nkh.2_RNA	NM_007250	NP_009181	O95600	KLF8_HUMAN	Kruppel-like factor 8 isoform 1	37					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAACAGAGATCCCCCTGAGAT	0.418													4	1					0	0	0.000248	0	0
HEPH	9843	broad.mit.edu	37	X	65413379	65413379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:65413379G>A	uc011moz.1	+	8	1337	c.1277G>A	c.(1276-1278)CGA>CAA	p.R426Q	HEPH_uc004dwn.2_Missense_Mutation_p.R426Q|HEPH_uc004dwo.2_Missense_Mutation_p.R156Q|HEPH_uc010nkr.2_Missense_Mutation_p.R426Q|HEPH_uc011mpa.1_Missense_Mutation_p.R426Q	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	423	Extracellular (Potential).|Plastocyanin-like 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						AGCTCCAGCCGAATTGGGGGC	0.398													13	9					0	0	0.002450	0	0
HEPH	9843	broad.mit.edu	37	X	65480098	65480098	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:65480098C>T	uc011moz.1	+	19	3262	c.3202C>T	c.(3202-3204)CGA>TGA	p.R1068*	HEPH_uc004dwn.2_Nonsense_Mutation_p.R1068*|HEPH_uc004dwo.2_Nonsense_Mutation_p.R798*|HEPH_uc010nkr.2_Nonsense_Mutation_p.R876*|HEPH_uc011mpa.1_Nonsense_Mutation_p.R1068*	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	1065	Extracellular (Potential).|Plastocyanin-like 6.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TGTTTTTTCTCGAACAGGTAA	0.468													3	2					0	0	0.000248	0	0
STARD8	9754	broad.mit.edu	37	X	67937433	67937434	+	Missense_Mutation	DNP	AA	TG	TG			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:67937433_67937434AA>TG	uc004dxa.2	+	5	809_810	c.437_438AA>TG	c.(436-438)CAA>CTG	p.Q146L	STARD8_uc004dxb.2_Missense_Mutation_p.Q226L|STARD8_uc004dxc.3_Missense_Mutation_p.Q146L	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	146					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						GGCAGCCAGCAAGCAGAGCCCA	0.554													20	8					0	0	0.004672	0	0
TEX11	56159	broad.mit.edu	37	X	69849514	69849514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:69849514C>T	uc004dyl.2	-	19	1762	c.1600G>A	c.(1600-1602)GAG>AAG	p.E534K	TEX11_uc004dyk.2_Missense_Mutation_p.E209K|TEX11_uc004dym.2_Missense_Mutation_p.E519K	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	534							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					GAACCTCTCTCTGCAACTAGA	0.328													49	27					0	0	0.003610	0	0
TSIX	9383	broad.mit.edu	37	X	73045103	73045103	+	RNA	SNP	C	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:73045103C>A	uc004ebn.2	+	1		c.33064C>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GCAGCAAACACAAATTGGCCT	0.299													22	13					5.26018e-13	1.0337e-12	0.001882	1	0
XIST	7503	broad.mit.edu	37	X	73066284	73066284	+	RNA	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:73066284A>G	uc004ebm.1	-	1		c.6305T>C				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGACGATTATAATCACACACA	0.488													17	8					0	0	0.006122	0	0
XIST	7503	broad.mit.edu	37	X	73070206	73070206	+	RNA	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:73070206G>A	uc004ebm.1	-	1		c.2383C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TAATTAAAGTGAATTCTACAA	0.279													14	5					0	0	0.001855	0	0
GPR174	84636	broad.mit.edu	37	X	78427485	78427485	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:78427485C>T	uc004edg.1	+	1	1017	c.981C>T	c.(979-981)ACC>ACT	p.T327T		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	327	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						CAGCTTCCACCATGACACCTG	0.408										HNSCC(63;0.18)			12	8					0	0	0.001368	0	0
CHM	1121	broad.mit.edu	37	X	85212875	85212875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:85212875G>A	uc004eet.2	-	7	955	c.925C>T	c.(925-927)CCT>TCT	p.P309S	CHM_uc011mqz.1_Missense_Mutation_p.P161S	NM_000390	NP_000381	P24386	RAE1_HUMAN	choroideremia isoform a	309					intracellular protein transport|protein geranylgeranylation|response to stimulus|visual perception	Rab-protein geranylgeranyltransferase complex	GTPase activator activity|Rab geranylgeranyltransferase activity			ovary(1)	1		all_lung(315;5.41e-06)				TATTCATCAGGATATTTCTCA	0.303													19	10					0	0	0.002780	0	0
NAP1L3	4675	broad.mit.edu	37	X	92927395	92927395	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:92927395A>G	uc004efq.2	-	1	1214	c.909T>C	c.(907-909)CCT>CCC	p.P303P	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	303					nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						CTTCTCTTTTAGGCTTTCCCT	0.438													28	20					0	0	0.001061	0	0
PCDH19	57526	broad.mit.edu	37	X	99605699	99605699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:99605699C>T	uc010nmz.2	-	4	4296	c.2620G>A	c.(2620-2622)GAA>AAA	p.E874K	PCDH19_uc004efw.3_Missense_Mutation_p.E827K|PCDH19_uc004efx.3_Missense_Mutation_p.E827K	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	874	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						GAATAGTTTTCAGTCTGCAAT	0.358													18	7					0	0	0.001882	0	0
SYTL4	94121	broad.mit.edu	37	X	99942167	99942168	+	Missense_Mutation	DNP	CA	TT	TT			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:99942167_99942168CA>TT	uc004egd.3	-	13	1436_1437	c.1080_1081TG>AA	c.(1078-1083)ATTGCC>ATAACC	p.A361T	SYTL4_uc010nnb.2_Missense_Mutation_p.A33T|SYTL4_uc010nnc.2_Missense_Mutation_p.A361T|SYTL4_uc004ege.3_Missense_Mutation_p.A361T|SYTL4_uc004egf.3_Missense_Mutation_p.A361T|SYTL4_uc004egg.3_3'UTR	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	361	C2 1.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AGGGAAAAGGCAATCCTGCCAG	0.495													35	13					0	0	0.004672	0	0
SYTL4	94121	broad.mit.edu	37	X	99944877	99944877	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:99944877G>A	uc004egd.3	-	11	1244	c.888C>T	c.(886-888)TCC>TCT	p.S296S	SYTL4_uc010nnb.2_5'UTR|SYTL4_uc010nnc.2_Silent_p.S296S|SYTL4_uc004ege.3_Silent_p.S296S|SYTL4_uc004egf.3_Silent_p.S296S|SYTL4_uc004egg.3_Silent_p.S296S	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	296					exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGCCTGGGACGGATTTGCTTC	0.423													20	12					0	0	0.002299	0	0
ARMCX5	64860	broad.mit.edu	37	X	101858321	101858321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:101858321G>A	uc004ejg.2	+	6	2133	c.1252G>A	c.(1252-1254)GGG>AGG	p.G418R	ARMCX5_uc004ejh.2_Missense_Mutation_p.G418R	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	418							binding			ovary(1)	1						GAAATTACTAGGGCACTTGAG	0.388													18	11					0	0	0.000958	0	0
MCART6	401612	broad.mit.edu	37	X	103349343	103349343	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:103349343G>A	uc004elu.2	-	2	779	c.598C>T	c.(598-600)CAG>TAG	p.Q200*		NM_001012755	NP_001012773	Q5H9E4	MCAR6_HUMAN	mitochondrial carrier triple repeat 6	200	Helical; Name=4; (Potential).|Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0						AGGCCATCCTGGATGGGGTCC	0.557													65	19					0	0	0.003610	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011267	105011267	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:105011267C>T	uc004elz.1	+	11	2430	c.1674C>T	c.(1672-1674)ATC>ATT	p.I558I		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	558	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						AAATGCCCATCAAGAAAAAAG	0.428													37	25					0	0	0.004878	0	0
MID2	11043	broad.mit.edu	37	X	107084038	107084038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:107084038G>A	uc004enl.2	+	2	716	c.143G>A	c.(142-144)AGC>AAC	p.S48N	MID2_uc004enk.2_Missense_Mutation_p.S48N	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	48	RING-type.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						TGTGCTCACAGCCTCTGCTTC	0.483													8	106					0	0	0.004482	0	0
GUCY2F	2986	broad.mit.edu	37	X	108673541	108673541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:108673541C>T	uc004eod.3	-	8	2062	c.1786G>A	c.(1786-1788)GAA>AAA	p.E596K	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	596	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CATACCATTTCGAACACATCA	0.383													136	63					0	0	0.003610	0	0
TRPC5	7224	broad.mit.edu	37	X	111097263	111097263	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:111097263C>T	uc004epl.1	-	4	1891	c.972G>A	c.(970-972)CGG>CGA	p.R324R	TRPC5_uc004epm.1_Silent_p.R324R	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	324	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CCCAGTGTTTCCGCCGCCATC	0.517													14	2					0	0	0.004007	0	0
ODZ1	10178	broad.mit.edu	37	X	123699397	123699397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:123699397C>T	uc004euj.2	-	12	2155	c.2091G>A	c.(2089-2091)ATG>ATA	p.M697I	ODZ1_uc011muj.1_Missense_Mutation_p.M696I|ODZ1_uc010nqy.2_Missense_Mutation_p.M697I	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	697	Extracellular (Potential).|EGF-like 6.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TACCACACTCCATGGTACACA	0.408													5	1					0	0	0.000602	0	0
SAGE1	55511	broad.mit.edu	37	X	134994548	134994548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:134994548G>A	uc004ezh.2	+	19	2757	c.2590G>A	c.(2590-2592)GAA>AAA	p.E864K	SAGE1_uc010nry.1_3'UTR|SAGE1_uc011mvv.1_Missense_Mutation_p.E488K	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	864										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					ACAATTTGTTGAATTTACCAT	0.348													70	23					0	0	0.003610	0	0
GPR112	139378	broad.mit.edu	37	X	135430934	135430934	+	Missense_Mutation	SNP	C	T	T	rs141778568	byFrequency	TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:135430934C>T	uc004ezu.1	+	6	5360	c.5069C>T	c.(5068-5070)TCC>TTC	p.S1690F	GPR112_uc010nsb.1_Missense_Mutation_p.S1485F|GPR112_uc010nsc.1_Missense_Mutation_p.S1457F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1690	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GCTATTTCCTCCATTCCAAAG	0.448													14	10					0	0	0.002450	0	0
MAGEA8	4107	broad.mit.edu	37	X	149013189	149013189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:149013189G>A	uc004fdw.1	+	3	358	c.143G>A	c.(142-144)GGA>GAA	p.G48E		NM_005364	NP_005355	P43361	MAGA8_HUMAN	melanoma antigen family A, 8	48											0	Acute lymphoblastic leukemia(192;6.56e-05)					CTGATCATGGGAACCCTTGAG	0.587													16	4					0	0	0.004990	0	0
PASD1	139135	broad.mit.edu	37	X	150840952	150840952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:150840952G>A	uc004fev.3	+	14	2067	c.1735G>A	c.(1735-1737)GGG>AGG	p.G579R		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	579						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGTCATCGTGGGGAATGAGAG	0.284													27	10					0	0	0.001271	0	0
PRRG3	79057	broad.mit.edu	37	X	150868980	150868980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:150868980G>A	uc004few.1	+	4	561	c.171G>A	c.(169-171)ATG>ATA	p.M57I		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	57	Gla.|Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTTGCAGATGGAGTTCTGGA	0.532													11	89					0	0	0.000978	0	0
GABRQ	55879	broad.mit.edu	37	X	151821304	151821304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:151821304G>A	uc004ffp.1	+	9	1479	c.1459G>A	c.(1459-1461)GAA>AAA	p.E487K		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	487						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAACCGTGTCGAAGCCCATGG	0.557													78	24					0	0	0.003610	0	0
PNMA5	114824	broad.mit.edu	37	X	152158808	152158808	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:152158808G>A	uc010ntw.2	-	3	1674	c.1335C>T	c.(1333-1335)CCC>CCT	p.P445P	PNMA5_uc004fha.3_Silent_p.P445P|PNMA5_uc010ntx.2_Silent_p.P445P|PNMA5_uc004fgy.3_Silent_p.P445P	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	445					apoptosis					ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ATGTTTCCCAGGGCTTGGGAT	0.597													31	18					0	0	0.003755	0	0
ATP2B3	492	broad.mit.edu	37	X	152821606	152821606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:152821606G>A	uc004fht.1	+	12	2284	c.2158G>A	c.(2158-2160)GGC>AGC	p.G720S	ATP2B3_uc004fhs.1_Missense_Mutation_p.G720S	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	720	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGCCAAATGCGGCATCATCCA	0.612													31	13					0	0	0.001512	0	0
CLIC2	1193	broad.mit.edu	37	X	154508605	154508605	+	Silent	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:154508605G>A	uc004fnf.2	-	5	665	c.415C>T	c.(415-417)CTG>TTG	p.L139L	CLIC2_uc010nvj.1_Silent_p.L157L	NM_001289	NP_001280	O15247	CLIC2_HUMAN	chloride intracellular channel 2	139	GST C-terminal.|C-terminal.				signal transduction	chloride channel complex|cytoplasm|nucleus	voltage-gated chloride channel activity			large_intestine(1)|ovary(1)|skin(1)	3	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TCTTTGAGCAGAGATTTTTCA	0.373													26	17					0	0	0.001786	0	0
CLIC2	1193	broad.mit.edu	37	X	154528438	154528438	+	Silent	SNP	A	G	G			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:154528438A>G	uc004fnf.2	-	2	328	c.78T>C	c.(76-78)AGT>AGC	p.S26S	CLIC2_uc010nvj.1_Silent_p.S44S	NM_001289	NP_001280	O15247	CLIC2_HUMAN	chloride intracellular channel 2	26	N-terminal.|Required for insertion into the membrane (By similarity).				signal transduction	chloride channel complex|cytoplasm|nucleus	voltage-gated chloride channel activity			large_intestine(1)|ovary(1)|skin(1)	3	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AGTTTCCAATACTCTCTCCAT	0.373													40	14					0	0	0.001485	0	0
SPRY3	10251	broad.mit.edu	37	X	155003687	155003687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrX:155003687G>A	uc004fnq.1	+	2	608	c.154G>A	c.(154-156)GAT>AAT	p.D52N	SPRY3_uc010nvl.1_Missense_Mutation_p.D52N	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	52					multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CCACAAGTCTGATTGGTCTCT	0.562													54	94					0	0	0.003610	0	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9154673	9154673	+	RNA	SNP	T	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrY:9154673T>A	uc004frl.1	-	4		c.424A>T				NR_001547				Homo sapiens RBMY1A3P pseudogene, mRNA sequence.												0						ATAACTCATCTTGAGATCAGG	0.383													64	26					0	0	0.003610	0	0
RPS4Y2	140032	broad.mit.edu	37	Y	22921930	22921930	+	Silent	SNP	C	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chrY:22921930C>T	uc011nbb.1	+	3	354	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_001039567	NP_001034656	Q8TD47	RS4Y2_HUMAN	ribosomal protein S4, Y-linked 2	86	S4 RNA-binding.				translation	ribosome	rRNA binding|structural constituent of ribosome				0						CTGCTGGATTCATAGGTAAGG	0.408													40	25					0	0	0.002852	0	0
RPL5	6125	broad.mit.edu	37	1	93301759	93301759	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:93301759delT	uc001doz.2	+	5	415	c.337delT	c.(337-339)TTTfs	p.F113fs	FAM69A_uc001dpc.2_Intron|RPL5_uc001dpa.2_Intron|RPL5_uc001dpb.2_Frame_Shift_Del_p.F63fs|RPL5_uc001dpd.2_5'Flank|SNORD21_uc001dpe.2_5'Flank	NM_000969	NP_000960	P46777	RL5_HUMAN	ribosomal protein L5	113					endocrine pancreas development|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	5S rRNA binding|protein binding|structural constituent of ribosome				0		all_lung(203;0.00265)|Lung NSC(277;0.0056)|all_neural(321;0.185)|Melanoma(281;0.192)|Glioma(108;0.203)		GBM - Glioblastoma multiforme(16;0.000305)|all cancers(265;0.000343)|Epithelial(280;0.0927)		TCTCAATAGGTTTGGCATGGA	0.398													80	158	---	---	---	---					
VCAM1	7412	broad.mit.edu	37	1	101198228	101198228	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr1:101198228delT	uc001dti.2	+	7	1900	c.1780delT	c.(1780-1782)TTAfs	p.L594fs	VCAM1_uc001dtj.2_Frame_Shift_Del_p.L502fs|VCAM1_uc010ouj.1_Frame_Shift_Del_p.L532fs	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	594	Ig-like C2-type 6.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	GGAAGTGGAATTAATTATCCA	0.343													17	34	---	---	---	---					
C16orf88	400506	broad.mit.edu	37	16	19725706	19725706	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr16:19725706delT	uc002dgq.2	-	2	667	c.652delA	c.(652-654)ATCfs	p.I218fs	IQCK_uc002dgr.2_5'Flank|IQCK_uc002dgs.2_5'Flank	NM_001012991	NP_001013009	Q1ED39	CP088_HUMAN	hypothetical protein LOC400506	218	Lys-rich.					nucleolus					0						TCCTGGTGGATTTTTTTTTTC	0.532													10	111	---	---	---	---					
MYO19	80179	broad.mit.edu	37	17	34864909	34864909	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:34864909delG	uc010wcy.1	-	15	2215	c.1223delC	c.(1222-1224)ACTfs	p.T408fs	MYO19_uc002hmw.2_Frame_Shift_Del_p.T408fs|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	408	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		ACCTATGAAAGTGGTCCACGA	0.542													10	16	---	---	---	---					
ABCA6	23460	broad.mit.edu	37	17	67092380	67092381	+	Splice_Site	INS	-	A	A			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr17:67092380_67092381insA	uc002jhw.1	-	25	3583	c.3408_splice	c.e25+1	p.F1136_splice		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6						transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					TATATACTTACAAAAAAGAAGT	0.282													17	31	---	---	---	---					
TET3	200424	broad.mit.edu	37	2	74327570	74327570	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:74327570delA	uc002skb.3	+	9	3250	c.3250delA	c.(3250-3252)AAGfs	p.K1084fs		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	1084							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCCCTCCCTCAAGGTGGAGCC	0.612													2	4	---	---	---	---					
XIRP2	129446	broad.mit.edu	37	2	168103439	168103440	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:168103439_168103440insT	uc002udx.2	+	8	5555_5556	c.5537_5538insT	c.(5536-5538)AATfs	p.N1846fs	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Frame_Shift_Ins_p.N1671fs|XIRP2_uc010fpq.2_Frame_Shift_Ins_p.N1624fs|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1671					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCAACCCTAAATTCCCTCAGCC	0.381													7	19	---	---	---	---					
PARD3B	117583	broad.mit.edu	37	2	205989120	205989130	+	Frame_Shift_Del	DEL	TAAAAAACATT	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr2:205989120_205989130delTAAAAAACATT	uc002var.1	+	9	1442_1452	c.1235_1245delTAAAAAACATT	c.(1234-1245)GTAAAAAACATTfs	p.V412fs	PARD3B_uc010fub.1_Frame_Shift_Del_p.V412fs|PARD3B_uc002vao.1_Frame_Shift_Del_p.V412fs|PARD3B_uc002vap.1_Frame_Shift_Del_p.V412fs|PARD3B_uc002vaq.1_Frame_Shift_Del_p.V412fs	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	412_415	PDZ 2.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		CCCATTTTTGTAAAAAACATTTTACCAAAGG	0.393													10	93	---	---	---	---					
RRP9	9136	broad.mit.edu	37	3	51968772	51968772	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:51968772delA	uc003dbw.1	-	12	1094	c.1055delT	c.(1054-1056)CTCfs	p.L352fs		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	352	WD 5.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		CTTCTTGGAGAGACCCCACAA	0.557													23	59	---	---	---	---					
DVL3	1857	broad.mit.edu	37	3	183883252	183883252	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr3:183883252delA	uc003fms.2	+	7	876	c.736delA	c.(736-738)AACfs	p.N246fs	DVL3_uc011bqw.1_Frame_Shift_Del_p.N246fs|DVL3_uc003fmt.2_5'UTR|DVL3_uc003fmu.2_Frame_Shift_Del_p.N78fs	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	246					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CATGTCACTCAACATCATCAC	0.413													18	38	---	---	---	---					
MSH5	4439	broad.mit.edu	37	6	31708367	31708369	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr6:31708367_31708369delGAG	uc003nwv.1	+	2	203_205	c.124_126delGAG	c.(124-126)GAGdel	p.E46del	MSH5_uc003nwt.1_In_Frame_Del_p.E46del|MSH5_uc003nwu.1_In_Frame_Del_p.E46del|MSH5_uc003nww.1_In_Frame_Del_p.E46del|MSH5_uc003nwx.1_In_Frame_Del_p.E46del	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	46					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						ggaggaagtcgaggaggaggagg	0.502								Direct_reversal_of_damage|MMR					2	4	---	---	---	---					
LMTK2	22853	broad.mit.edu	37	7	97822735	97822736	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr7:97822735_97822736insT	uc003upd.1	+	11	3251_3252	c.2958_2959insT	c.(2956-2961)CCCTTCfs	p.P986fs		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	986_987					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					TGTCAGCACCCTTCCCAGCCTC	0.564													56	136	---	---	---	---					
SHB	6461	broad.mit.edu	37	9	38068598	38068599	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2GI-06A-11D-A196-08	TCGA-EE-A2GI-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	20f703f7-1db7-40b8-ad2d-e34275075314	2bdd457b-f872-4c5f-997d-1db7d15dfe68	g.chr9:38068598_38068599insT	uc004aax.2	-	1	612_613	c.44_45insA	c.(43-45)AAGfs	p.K15fs		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	15	Mediates interaction with LAT, FAK1, JAK1 and JAK3.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		GGCTCTTGGTCTTGCTGTTGCC	0.559													8	17	---	---	---	---					
