Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PER3	8863	broad.mit.edu	37	1	7861237	7861237	+	Silent	SNP	T	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:7861237T>C	uc001aoo.2	+	7	1030	c.855T>C	c.(853-855)CTT>CTC	p.L285L	PER3_uc009vmg.1_Silent_p.L286L|PER3_uc009vmh.1_Silent_p.L286L|PER3_uc001aop.2_Silent_p.L286L|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Silent_p.L285L	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	285	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GTGTTTTTCTTGAAGTAGATG	0.328000													6	56					0	0	0.003080	0	0
PLA2G5	5322	broad.mit.edu	37	1	20412721	20412721	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:20412721G>A	uc001bcy.2	+	3	453	c.185_splice	c.e3+1	p.W62_splice	PLA2G5_uc001bcw.2_Splice_Site|PLA2G5_uc001bcx.2_Splice_Site_p.W93_splice	NM_000929	NP_000920	P39877	PA2G5_HUMAN	phospholipase A2, group V precursor						lipid catabolic process	extracellular region	calcium ion binding|calcium-dependent phospholipase A2 activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000249)|Lung NSC(340;0.000287)|Breast(348;0.000812)|Ovarian(437;0.00328)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;8.15e-05)|Kidney(64;0.000184)|GBM - Glioblastoma multiforme(114;0.00089)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0652)		GCACCGATTGGTGAGCTGATC	0.398000													11	82					0	0	0.013537	0	0
GPN2	54707	broad.mit.edu	37	1	27215604	27215604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:27215604G>A	uc001bnd.1	-	2	706	c.424C>T	c.(424-426)CAC>TAC	p.H142Y		NM_018066	NP_060536	Q9H9Y4	GPN2_HUMAN	ATP binding domain 1 family, member B	142							GTP binding				0						TCCACGAGGTGGACGGCAGTC	0.557000													6	47					0	0	0.003080	0	0
SDC3	9672	broad.mit.edu	37	1	31347210	31347210	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:31347210C>A	uc001bse.2	-	4	1143	c.1096G>T	c.(1096-1098)GAC>TAC	p.D366Y	SDC3_uc001bsd.2_Missense_Mutation_p.D308Y	NM_014654	NP_055469	O75056	SDC3_HUMAN	syndecan 3	366	Extracellular (Potential).					integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)|Colorectal(325;0.0466)|all_neural(195;0.0966)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0197)|READ - Rectum adenocarcinoma(331;0.0649)		CTGCCCGAGTCGATGGCATTG	0.667000													10	56					4.3838e-07	4.48575e-07	0.001855	1	0
CSMD2	114784	broad.mit.edu	37	1	34174715	34174715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:34174715C>T	uc001bxn.1	-	22	3459	c.3430G>A	c.(3430-3432)GAA>AAA	p.E1144K	CSMD2_uc001bxm.1_Missense_Mutation_p.E1184K|CSMD2_uc001bxo.1_Missense_Mutation_p.E57K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1144	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TCGGAGAGTTCGAATGCCCTG	0.438000													15	104					0	0	0.012319	0	0
ERMAP	114625	broad.mit.edu	37	1	43296766	43296766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:43296766C>T	uc001cic.1	+	4	683	c.413C>T	c.(412-414)ACC>ATC	p.T138I	ERMAP_uc010ojw.1_Missense_Mutation_p.T199I|ERMAP_uc001cid.1_Intron|ERMAP_uc001cie.1_Missense_Mutation_p.T138I|ERMAP_uc001cif.1_Missense_Mutation_p.T48I	NM_001017922	NP_001017922	Q96PL5	ERMAP_HUMAN	erythroblast membrane-associated protein	138	Ig-like V-type.|Extracellular (Potential).		Missing (in Sc-3 allele).			integral to membrane|plasma membrane				ovary(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AAAGAGGACACCGTGATCCTG	0.498000													6	31					0	0	0.001984	0	0
INADL	10207	broad.mit.edu	37	1	62327290	62327290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:62327290C>T	uc001dab.2	+	19	2504	c.2390C>T	c.(2389-2391)TCA>TTA	p.S797L	INADL_uc009waf.1_Missense_Mutation_p.S797L|INADL_uc001daa.2_Missense_Mutation_p.S797L|INADL_uc001dad.3_Missense_Mutation_p.S494L|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	797					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						ACTGAATTTTCAGGAACAATT	0.254000													9	58					0	0	0.008291	0	0
CLCA1	1179	broad.mit.edu	37	1	86964337	86964337	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:86964337C>T	uc001dlt.2	+	13	2325	c.2196C>T	c.(2194-2196)TCC>TCT	p.S732S		NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	732					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		GCAGAACATCCTCGGGAGGCT	0.448000													9	113					0	0	0.008291	0	0
ATP8B2	57198	broad.mit.edu	37	1	154317975	154317975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:154317975C>T	uc001fex.2	+	23	2747	c.2747C>T	c.(2746-2748)ACC>ATC	p.T916I		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	902	Helical; (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			TTTGCTTTCACCATGGTCCAC	0.433000											OREG0013835	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	248					0	0	0.008361	0	0
IGSF9	57549	broad.mit.edu	37	1	159899999	159899999	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:159899999G>A	uc001fur.2	-	15	2242	c.2044C>T	c.(2044-2046)CTG>TTG	p.L682L	IGSF9_uc001fuq.2_Silent_p.L666L|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	682	Fibronectin type-III 2.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CCTGGCACCAGCAGCTCTGTT	0.597000													22	135					0	0	0.005443	0	0
IGSF9	57549	broad.mit.edu	37	1	159912857	159912857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:159912857C>T	uc001fur.2	-	3	341	c.143G>A	c.(142-144)GGC>GAC	p.G48D	IGSF9_uc001fuq.2_Missense_Mutation_p.G48D	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	48	Ig-like 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			ggggggccggccggccggggg	0.527000													18	56					0	0	0.008871	0	0
FCGR3A	2214	broad.mit.edu	37	1	161514743	161514743	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:161514743G>A	uc001gat.3	-	5	462	c.325C>T	c.(325-327)CTG>TTG	p.L109L	FCGR3A_uc001gar.2_Silent_p.L145L|FCGR3A_uc001gas.2_Silent_p.L144L|FCGR3A_uc009wuh.2_Silent_p.L108L|FCGR3A_uc009wui.2_Silent_p.L109L	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	109	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TGGAGCAACAGCCAGCCTGAA	0.562000													7	17					0	0	0.006214	0	0
HSD17B7	51478	broad.mit.edu	37	1	162769628	162769628	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:162769628C>T	uc001gci.2	+	5	638	c.543C>T	c.(541-543)CTC>CTT	p.L181L	HSD17B7_uc009wuv.2_RNA	NM_016371	NP_057455	P56937	DHB7_HUMAN	hydroxysteroid (17-beta) dehydrogenase 7	181	Extracellular (Potential).				cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	3-keto sterol reductase activity|estradiol 17-beta-dehydrogenase activity			ovary(1)	1	all_hematologic(112;0.115)				NADH(DB00157)	ATTTCAGCCTCGAGGACTTCC	0.502000													11	30					0	0	0.003163	0	0
TNN	63923	broad.mit.edu	37	1	175046756	175046756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:175046756G>A	uc001gkl.1	+	2	315	c.202G>A	c.(202-204)GAT>AAT	p.D68N	TNN_uc010pmx.1_Missense_Mutation_p.D68N	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	68					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CCTCAGTGACGATGGGGCTTC	0.577000													19	46					0	0	0.012319	0	0
PTGS2	5743	broad.mit.edu	37	1	186648534	186648534	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:186648534C>T	uc001gsb.2	-	2	226	c.89G>A	c.(88-90)GGT>GAT	p.G30D	PTGS2_uc009wyo.2_Translation_Start_Site	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	30	EGF-like.				cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	CATACATACACCTCGGTTTTG	0.388000													8	47					0	0	0.004482	0	0
CRB1	23418	broad.mit.edu	37	1	197391051	197391051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:197391051G>A	uc001gtz.2	+	6	2228	c.2093G>A	c.(2092-2094)TGC>TAC	p.C698Y	CRB1_uc010poz.1_Missense_Mutation_p.C629Y|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.C586Y|CRB1_uc010ppb.1_Missense_Mutation_p.C698Y|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.C179Y|CRB1_uc001gub.1_Missense_Mutation_p.C347Y	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	698	Extracellular (Potential).|EGF-like 12.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CAGTGTGACTGCCACAGGCCC	0.517000													4	47					0	0	0.009096	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204236633	204236633	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:204236633G>A	uc001hau.2	-	5	567	c.250C>T	c.(250-252)CTG>TTG	p.L84L		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	84	PH.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			CGATCCACCAGGACGAACCAG	0.582000													25	128					0	0	0.010818	0	0
LGTN	1939	broad.mit.edu	37	1	206772928	206772928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:206772928G>A	uc001heh.2	-	10	1300	c.1091C>T	c.(1090-1092)TCC>TTC	p.S364F	LGTN_uc009xbw.2_Missense_Mutation_p.S240F	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	364					intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			GATAGTCTGGGAGGTCGGGGA	0.507000													16	88					0	0	0.010504	0	0
TMEM63A	9725	broad.mit.edu	37	1	226050548	226050548	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:226050548G>A	uc001hpm.1	-	11	1000	c.750C>T	c.(748-750)GAC>GAT	p.D250D		NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	250						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					TGGGATACGCGTCCCTGTGGC	0.567000													8	68					0	0	0.006214	0	0
FMN2	56776	broad.mit.edu	37	1	240519181	240519181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:240519181G>A	uc010pyd.1	+	14	5056	c.4831G>A	c.(4831-4833)GAA>AAA	p.E1611K	FMN2_uc010pye.1_Missense_Mutation_p.E1615K|FMN2_uc010pyf.1_Intron|FMN2_uc010pyg.1_Missense_Mutation_p.E207K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1611	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GCCTTTCAAGGAAAACATGGA	0.318000													6	28					0	0	0.001168	0	0
AHCTF1	25909	broad.mit.edu	37	1	247040329	247040329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:247040329G>A	uc001ibu.1	-	22	2867	c.2860C>T	c.(2860-2862)CTT>TTT	p.L954F	AHCTF1_uc001ibv.1_Missense_Mutation_p.L963F|AHCTF1_uc009xgs.1_5'UTR|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	954	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TGCACTAAAAGGAATTCATGA	0.348000													4	38					0	0	0.009096	0	0
OR2G3	81469	broad.mit.edu	37	1	247769724	247769724	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:247769724C>T	uc010pyz.1	+	1	837	c.837C>T	c.(835-837)ACC>ACT	p.T279T		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TCTTCTACACCATGGTGACCC	0.428000													4	42					0	0	0.009096	0	0
OR2M4	26245	broad.mit.edu	37	1	248402269	248402269	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:248402269C>T	uc010pzh.1	+	1	39	c.39C>T	c.(37-39)ATC>ATT	p.I13I		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CCATCTTCATCCTGCTGGGAA	0.428000													11	78					0	0	0.001855	0	0
OR2T11	127077	broad.mit.edu	37	1	248790279	248790279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr1:248790279G>A	uc001ier.1	-	1	151	c.151C>T	c.(151-153)CGC>TGC	p.R51C		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTGTGGAGGCGAGAGTCCACC	0.498000													23	87					0	0	0.007291	0	0
TUBB8	347688	broad.mit.edu	37	10	93691	93691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr10:93691G>A	uc001ifi.2	-	4	641	c.641C>T	c.(640-642)ACC>ATC	p.T214I	TUBB8_uc009xhe.2_Missense_Mutation_p.T177I|TUBB8_uc010pzs.1_Missense_Mutation_p.T142I	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	214					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		CAGTTTTAGGGTCTTGGAACA	0.537000													17	65					0	0	0.010504	0	0
SEC24C	9632	broad.mit.edu	37	10	75530502	75530502	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr10:75530502G>A	uc001juw.2	+	23	3269	c.3090G>A	c.(3088-3090)AAG>AAA	p.K1030K	SEC24C_uc001jux.2_Silent_p.K1030K|SEC24C_uc010qko.1_Silent_p.K911K|SEC24C_uc010qkp.1_Silent_p.K278K|SEC24C_uc010qkq.1_Silent_p.K278K|FUT11_uc001juy.1_5'Flank|FUT11_uc001juz.1_5'Flank|FUT11_uc001jva.2_5'Flank	NM_004922	NP_004913	P53992	SC24C_HUMAN	SEC24-related protein C	1030					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|zinc ion binding			skin(2)|central_nervous_system(1)	3	Prostate(51;0.0112)					CACTGTCCAAGAAGGTTCGAG	0.463000													14	80					0	0	0.010504	0	0
MYST4	23522	broad.mit.edu	37	10	76739017	76739017	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr10:76739017C>T	uc001jwn.1	+	10	2644	c.2151C>T	c.(2149-2151)GGC>GGT	p.G717G	MYST4_uc001jwm.1_Silent_p.G425G|MYST4_uc001jwo.1_Silent_p.G425G|MYST4_uc001jwp.1_Silent_p.G534G	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	717	Negatively regulates HAT activity.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					AAGACTGTGGCCGGTACCCTT	0.383000			T	CREBBP	AML								7	36					0	0	0.003080	0	0
PPRC1	23082	broad.mit.edu	37	10	103909754	103909754	+	Silent	SNP	T	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr10:103909754T>C	uc001kum.2	+	14	5002	c.4963T>C	c.(4963-4965)TTG>CTG	p.L1655L	PPRC1_uc001kun.2_Silent_p.L1533L|PPRC1_uc010qqj.1_Silent_p.L1391L|PPRC1_uc009xxa.2_RNA|NOLC1_uc001kuo.2_5'Flank|NOLC1_uc001kup.2_5'Flank|NOLC1_uc001kuq.2_5'Flank|NOLC1_uc009xxb.1_5'Flank|NOLC1_uc001kur.2_5'Flank	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1655					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		TGACACATTGTTGAAACAGGC	0.488000													20	79					0	0	0.003330	0	0
CPXM2	119587	broad.mit.edu	37	10	125521583	125521583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr10:125521583C>T	uc001lhk.1	-	11	1907	c.1582G>A	c.(1582-1584)GAC>AAC	p.D528N	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	528					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CGCACCAGGTCGTAGGGGTAC	0.647000													36	153					0	0	0.013114	0	0
MUC2	4583	broad.mit.edu	37	11	1094812	1094812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:1094812C>T	uc001lsx.1	+	34	13013	c.12986C>T	c.(12985-12987)CCT>CTT	p.P4329L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4329						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	AGGCCCTACCCTTCCTCTGTG	0.627000													24	278					0	0	0.004289	0	0
OSBPL5	114879	broad.mit.edu	37	11	3115487	3115487	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:3115487G>A	uc001lxk.2	-	15	1857	c.1699C>T	c.(1699-1701)CAG>TAG	p.Q567*	OSBPL5_uc010qxq.1_Nonsense_Mutation_p.Q478*|OSBPL5_uc009ydw.2_Nonsense_Mutation_p.Q499*|OSBPL5_uc001lxl.2_Nonsense_Mutation_p.Q499*|OSBPL5_uc009ydx.2_Nonsense_Mutation_p.Q591*|OSBPL5_uc001lxj.2_Nonsense_Mutation_p.Q21*	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	567					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		AATTCCAGCTGGGCCTGGAAG	0.597000													8	43					0	0	0.006214	0	0
KCNC1	3746	broad.mit.edu	37	11	17793307	17793307	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:17793307G>A	uc001mnk.3	+	2	721	c.666G>A	c.(664-666)ACG>ACA	p.T222T	KCNC1_uc009yhc.1_Silent_p.T222T	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	222						voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						TGAACAAGACGGAGATCGAGA	0.582000													6	67					0	0	0.003080	0	0
SLC5A12	159963	broad.mit.edu	37	11	26714069	26714069	+	Missense_Mutation	SNP	C	T	T	rs139478059		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:26714069C>T	uc001mra.2	-	9	1433	c.1120G>A	c.(1120-1122)GAC>AAC	p.D374N	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Missense_Mutation_p.D374N	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	374	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						CTCAGCTTGTCGGAGAGATGA	0.438000													4	52					0	0	0.001168	0	0
CHST1	8534	broad.mit.edu	37	11	45672385	45672385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:45672385G>A	uc001mys.1	-	4	760	c.89C>T	c.(88-90)TCC>TTC	p.S30F		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	30	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GGTGTGAAAGGACTTGGCGGT	0.652000													13	132					0	0	0.004007	0	0
OR4B1	119765	broad.mit.edu	37	11	48239251	48239251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:48239251G>A	uc010rhs.1	+	1	890	c.890G>A	c.(889-891)AGA>AAA	p.R297K		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						ATCGCCATAAGAAGATTGTGG	0.418000													5	36					0	0	0.001168	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65347927	65347927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:65347927C>T	uc001oeo.3	+	6	876	c.611C>T	c.(610-612)GCC>GTC	p.A204V	EHBP1L1_uc001oep.1_5'Flank	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	204										central_nervous_system(1)	1						GCCCCGGAGGCCCGGGCTCGA	0.627000													5	78					0	0	0.003080	0	0
CTSC	1075	broad.mit.edu	37	11	88033712	88033712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:88033712G>A	uc001pck.3	-	5	844	c.743C>T	c.(742-744)CCT>CTT	p.P248L	CTSC_uc001pcl.3_Missense_Mutation_p.P100L	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	248					immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GTTTCGAACAGGACTGACAAA	0.383000													3	37					0	0	0.001168	0	0
DDI1	414301	broad.mit.edu	37	11	103908196	103908196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:103908196G>A	uc001phr.2	+	1	889	c.646G>A	c.(646-648)GAG>AAG	p.E216K	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	216					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		CAAAATAGAAGAGGAAATCCG	0.488000													9	87					0	0	0.013537	0	0
NLRX1	79671	broad.mit.edu	37	11	119044728	119044728	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr11:119044728G>C	uc001pvu.2	+	5	985	c.770G>C	c.(769-771)GGA>GCA	p.G257A	NLRX1_uc010rzc.1_Missense_Mutation_p.G79A|NLRX1_uc001pvv.2_Missense_Mutation_p.G257A|NLRX1_uc001pvw.2_Missense_Mutation_p.G257A|NLRX1_uc001pvx.2_Missense_Mutation_p.G257A	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	257	Required for interaction with MAVS.|NACHT.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GCAGGCACGGGACTTTGTAGT	0.592000													9	64					0	0	0.013537	0	0
TROAP	10024	broad.mit.edu	37	12	49724403	49724403	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr12:49724403A>G	uc001rtx.3	+	13	1942	c.1775A>G	c.(1774-1776)TAC>TGC	p.Y592C	TROAP_uc009zlh.2_Missense_Mutation_p.Y592C|TROAP_uc001rty.2_Intron	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	592	Cys-rich.|4 X 33 AA approximate tandem repeats.|3.				cell adhesion	cytoplasm				ovary(1)	1						CTAGAGTCCTACTGTAGGATT	0.617000													3	83					0	0	0.009096	0	0
LRP1	4035	broad.mit.edu	37	12	57578672	57578672	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr12:57578672C>T	uc001snd.2	+	39	6703	c.6237C>T	c.(6235-6237)ATC>ATT	p.I2079I		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2079	LDL-receptor class B 20.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TTGAACGGATCGACCTGGAGA	0.547000													7	59					0	0	0.004482	0	0
C12orf50	160419	broad.mit.edu	37	12	88391952	88391952	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr12:88391952T>A	uc001tam.1	-	4	317	c.149A>T	c.(148-150)AAA>ATA	p.K50I	C12orf50_uc001tan.2_Missense_Mutation_p.K104I	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	50										skin(2)|ovary(1)	3						CTGAATTTCTTTCTGTAGTGT	0.373000													5	20					0	0	0.001168	0	0
VEZT	55591	broad.mit.edu	37	12	95656847	95656847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr12:95656847C>T	uc001tdz.2	+	4	529	c.424C>T	c.(424-426)CCT>TCT	p.P142S	VEZT_uc009zsy.1_Intron|VEZT_uc001tdr.2_Intron|VEZT_uc001tds.2_Missense_Mutation_p.P94S|VEZT_uc001tdt.2_Missense_Mutation_p.P94S|VEZT_uc009zsz.1_Missense_Mutation_p.P142S|VEZT_uc001tdv.2_Missense_Mutation_p.P111S|VEZT_uc001tdw.1_Missense_Mutation_p.P94S|VEZT_uc009zta.1_Missense_Mutation_p.P94S	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	142	Helical; (Potential).					acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						CCTGGCAACCCCTAATATTTG	0.448000													11	175					0	0	0.004007	0	0
STAB2	55576	broad.mit.edu	37	12	104048398	104048398	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr12:104048398C>T	uc001tjw.2	+	13	1659	c.1473C>T	c.(1471-1473)ATC>ATT	p.I491I		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	491	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AAGGGGACATCATTGCTTCCA	0.368000													5	58					0	0	0.001168	0	0
C12orf51	283450	broad.mit.edu	37	12	112676998	112676998	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr12:112676998G>A	uc009zwc.2	-	27	3900	c.3882C>T	c.(3880-3882)CTC>CTT	p.L1294L		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GTCGATCCATGAGCTGCACAA	0.532000													32	165					0	0	0.004878	0	0
OAS2	4939	broad.mit.edu	37	12	113446901	113446901	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr12:113446901C>T	uc001tuj.2	+	10	2045	c.1905C>T	c.(1903-1905)ATC>ATT	p.I635I	OAS2_uc001tui.1_Silent_p.I635I	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	635	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						GGCCTGTGATCTTGGACCCAG	0.493000													27	158					0	0	0.003271	0	0
ATP8A2	51761	broad.mit.edu	37	13	26129185	26129185	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr13:26129185C>T	uc001uqk.2	+	13	1384	c.1242C>T	c.(1240-1242)AAC>AAT	p.N414N	ATP8A2_uc010tdi.1_Silent_p.N374N|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc001uql.1_Silent_p.N374N	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	374	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		GGACATCAAACCTTAATGAAG	0.428000													3	28					0	0	0.009096	0	0
PCDH20	64881	broad.mit.edu	37	13	61986959	61986959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr13:61986959C>T	uc001vid.3	-	2	1637	c.1273G>A	c.(1273-1275)GAA>AAA	p.E425K	PCDH20_uc010thj.1_Missense_Mutation_p.E425K	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	398	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		GGGACAATTTCAGGGGGTCTG	0.448000													13	66					0	0	0.004990	0	0
DZIP1	22873	broad.mit.edu	37	13	96237103	96237103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr13:96237103C>T	uc001vmk.2	-	22	3263	c.2411G>A	c.(2410-2412)GGA>GAA	p.G804E	DZIP1_uc001vmi.2_Missense_Mutation_p.G52E|DZIP1_uc001vmj.2_Missense_Mutation_p.G280E|DZIP1_uc001vml.2_Missense_Mutation_p.G785E|DZIP1_uc001vmm.2_5'Flank	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	804					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			AGATTTTTTTCCCAAAGATAT	0.428000													4	34					0	0	0.009096	0	0
F7	2155	broad.mit.edu	37	13	113772793	113772793	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr13:113772793C>G	uc001vsv.2	+	9	923	c.872C>G	c.(871-873)CCC>CGC	p.P291R	F7_uc001vsw.2_Missense_Mutation_p.P269R|F7_uc010tjt.1_Missense_Mutation_p.P222R	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	291	Peptidase S1.				anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	GTCATCATCCCCAGCACGTAC	0.682000													9	145					0	0	0.013537	0	0
ZNF828	283489	broad.mit.edu	37	13	115090383	115090384	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr13:115090383_115090384CC>TT	uc010ahb.2	+	3	1395_1396	c.1066_1067CC>TT	c.(1066-1068)CCT>TTT	p.P356F	ZNF828_uc001vuv.2_Missense_Mutation_p.P356F|ZNF828_uc010tko.1_Missense_Mutation_p.P356F	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	356	Mediates interaction with MAD2L2.|Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		TTCTGTATCTCCTGGACCTTGG	0.500000													8	103					0	0	0.004672	0	0
OR4K15	81127	broad.mit.edu	37	14	20443887	20443887	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:20443887C>T	uc010tkx.1	+	1	210	c.210C>T	c.(208-210)ATC>ATT	p.I70I		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	70	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTCTCATCATCCTCACTGTGA	0.443000													5	34					0	0	0.003080	0	0
OR11H6	122748	broad.mit.edu	37	14	20692607	20692607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:20692607C>T	uc010tlc.1	+	1	739	c.739C>T	c.(739-741)CCC>TCC	p.P247S		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	247	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		GCTTTGTATTCCCTCTGGTGC	0.473000													5	25					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	14	22337305	22337305	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:22337305C>T	uc010tmf.1	+	2	178	c.99C>T	c.(97-99)GTC>GTT	p.V33V	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Silent_p.V32V|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		CCCTGAGTGTCCAGGAGGGAG	0.438000													8	50					0	0	0.004482	0	0
MYH6	4624	broad.mit.edu	37	14	23863404	23863404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:23863404G>A	uc001wjv.2	-	21	2625	c.2558C>T	c.(2557-2559)ACC>ATC	p.T853I		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	853	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TTCCTTCATGGTGGCCATCTC	0.572000													25	104					0	0	0.009535	0	0
HECTD1	25831	broad.mit.edu	37	14	31642763	31642763	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:31642763T>A	uc001wrc.1	-	5	1342	c.853A>T	c.(853-855)ACA>TCA	p.T285S		NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	285					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		CTGCAAAGTGTTGAGAGCAGA	0.393000													20	79					0	0	0.002780	0	0
DDHD1	80821	broad.mit.edu	37	14	53513522	53513522	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:53513522G>A	uc001xai.2	-	13	2897	c.2667C>T	c.(2665-2667)CAC>CAT	p.H889H	DDHD1_uc001xaj.2_Silent_p.H868H|DDHD1_uc001xah.2_Silent_p.H861H|DDHD1_uc001xag.2_Silent_p.H443H	NM_001160148	NP_001153620	Q8NEL9	DDHD1_HUMAN	DDHD domain containing 1 isoform c	889					lipid catabolic process	cytoplasm	hydrolase activity|metal ion binding			ovary(2)	2	Breast(41;0.037)					CATCATCATCGTGCTCATGTT	0.398000													7	66					0	0	0.004482	0	0
DACT1	51339	broad.mit.edu	37	14	59112402	59112403	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:59112402_59112403GG>AA	uc001xdw.2	+	4	1225_1226	c.1061_1062GG>AA	c.(1060-1062)AGG>AAA	p.R354K	DACT1_uc010trv.1_Missense_Mutation_p.R73K|DACT1_uc001xdx.2_Missense_Mutation_p.R317K|DACT1_uc010trw.1_Missense_Mutation_p.R73K	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	354					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						CACCCTGTAAGGACCAACAAAC	0.554000													6	22					0	0	0.004672	0	0
GPHN	10243	broad.mit.edu	37	14	67389392	67389392	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:67389392C>T	uc001xiy.2	+	7	1587	c.466C>T	c.(466-468)CAA>TAA	p.Q156*	GPHN_uc001xiw.2_Nonsense_Mutation_p.Q138*|GPHN_uc001xix.2_Nonsense_Mutation_p.Q156*|GPHN_uc010tss.1_Nonsense_Mutation_p.Q169*|GPHN_uc010tst.1_Nonsense_Mutation_p.Q125*|GPHN_uc010tsu.1_Nonsense_Mutation_p.Q46*	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	156	Interaction with GABARAP (By similarity).|MPT Mo-transferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		GGAATGCTTTCAATTCATACT	0.368000			T	MLL	AL								9	76					0	0	0.008291	0	0
SERPINA3	12	broad.mit.edu	37	14	95081330	95081330	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:95081330G>A	uc001ydp.2	+	2	631	c.552G>A	c.(550-552)GTG>GTA	p.V184V	SERPINA3_uc001ydo.3_Silent_p.V209V|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.V184V|SERPINA3_uc001yds.2_Silent_p.V184V|SERPINA3_uc010avg.2_Silent_p.V184V	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	184					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		ACGACTACGTGAAGAATGGAA	0.488000													12	94					0	0	0.003163	0	0
TCL1A	8115	broad.mit.edu	37	14	96178665	96178665	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:96178665G>A	uc001yfc.3	-	2	319	c.189C>T	c.(187-189)ACC>ACT	p.T63T	TCL1A_uc001yfb.3_Silent_p.T63T	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	63					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		TCTGGGTGGGGGTCATAGGCC	0.547000			T	TRA@	T-CLL								18	102					0	0	0.008871	0	0
AK7	122481	broad.mit.edu	37	14	96922768	96922768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:96922768C>T	uc001yfn.2	+	11	1227	c.1183C>T	c.(1183-1185)CAC>TAC	p.H395Y		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	395	Adenylate kinase.|Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CAAACTGCATCACATCCAACT	0.393000													9	74					0	0	0.008291	0	0
ADAM6	8755	broad.mit.edu	37	14	106208028	106208028	+	RNA	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:106208028C>T	uc010tyt.1	-	3628		c.59089G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Missense_Mutation_p.D125N|uc001ysf.2_Missense_Mutation_p.D125N					Parts of antibodies, mostly variable regions.												0						ACGGCGATGTCGCTGGGATAG	0.612000													66	183					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106322144	106322144	+	RNA	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:106322144C>T	uc010tyt.1	-	3598		c.55342G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						TGCCCCCTCTCAGGACTGATG	0.582000													8	38					0	0	0.006214	0	0
ADAM6	8755	broad.mit.edu	37	14	106725652	106725652	+	RNA	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr14:106725652C>T	uc010tyt.1	-	587		c.17996G>A								Parts of antibodies, mostly variable regions.												0						GCCCAAACTCCATGGTGAGTT	0.458000													12	148					0	0	0.002450	0	0
RYR3	6263	broad.mit.edu	37	15	34064264	34064264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr15:34064264C>T	uc001zhi.2	+	63	9030	c.8960C>T	c.(8959-8961)TCT>TTT	p.S2987F	RYR3_uc010bar.2_Missense_Mutation_p.S2987F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2987	Helical; Name=M'; (Potential).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AAAGGCGTTTCTCAGAATATT	0.453000													6	33					0	0	0.003080	0	0
GPR176	11245	broad.mit.edu	37	15	40093419	40093419	+	Nonsense_Mutation	SNP	G	A	A	rs147730816		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr15:40093419G>A	uc001zkj.1	-	3	2328	c.1462C>T	c.(1462-1464)CAG>TAG	p.Q488*	GPR176_uc010uck.1_Nonsense_Mutation_p.Q428*	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	488	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity	p.Q488*(1)		ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		ACCTTTGTCTGGATCAGCTCT	0.517000													25	102					0	0	0.008361	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42281705	42281705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr15:42281705C>T	uc001zow.1	-	14	1544	c.1544G>A	c.(1543-1545)GGG>GAG	p.G515E	PLA2G4E_uc010udc.1_5'UTR|PLA2G4E_uc001zov.1_Missense_Mutation_p.G168E	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	532	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		GATGAAGGCCCCATACTTCTG	0.612000											OREG0023079	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	42					0	0	0.001168	0	0
ADAL	161823	broad.mit.edu	37	15	43641177	43641177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr15:43641177C>T	uc010udo.1	+	10	1199	c.625C>T	c.(625-627)CTC>TTC	p.L209F	ADAL_uc001zrh.2_Missense_Mutation_p.L236F|ADAL_uc001zri.1_Missense_Mutation_p.L121F	NM_001159280	NP_001152752	Q6DHV7	ADAL_HUMAN	adenosine deaminase-like isoform 1	236					adenosine catabolic process|inosine biosynthetic process|purine ribonucleoside monophosphate biosynthetic process		adenosine deaminase activity|metal ion binding				0		all_cancers(109;7.96e-11)|all_epithelial(112;2.96e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;9.31e-07)		TGGAACATTTCTCAACTCCGG	0.473000													9	66					0	0	0.010729	0	0
IGDCC3	9543	broad.mit.edu	37	15	65621770	65621770	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr15:65621770G>A	uc002aos.2	-	13	2415	c.2163C>T	c.(2161-2163)TTC>TTT	p.F721F	IGDCC3_uc002aor.1_Silent_p.F8F	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	721	Cytoplasmic (Potential).									ovary(3)	3						TGGCCGGGGGGAACAGCTGCT	0.637000													44	243					0	0	0.014410	0	0
MAP2K1	5604	broad.mit.edu	37	15	66774131	66774131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr15:66774131G>A	uc010bhq.2	+	6	1082	c.607G>A	c.(607-609)GAG>AAG	p.E203K	MAP2K1_uc010ujp.1_Missense_Mutation_p.E181K	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	203	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						CTCCCGTGGGGAGATCAAGCT	0.522000									Cardiofaciocutaneous_syndrome				26	88					0	0	0.012213	0	0
SIN3A	25942	broad.mit.edu	37	15	75693124	75693124	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr15:75693124G>T	uc002bai.2	-	11	1943	c.1684C>A	c.(1684-1686)CCA>ACA	p.P562T	SIN3A_uc002baj.2_Missense_Mutation_p.P562T|SIN3A_uc010uml.1_Missense_Mutation_p.P562T	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	562	Interactions with SUDS3 and SAP130.|Interaction with NCOR1 (By similarity).			P -> G (in Ref. 4; AAK95854).	blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TAACTCTTTGGTAAGGCTCGA	0.493000													3	30					0.004672	0.00474388	0.004672	1	0
SIN3A	25942	broad.mit.edu	37	15	75693210	75693210	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr15:75693210T>A	uc002bai.2	-	11	1857	c.1598A>T	c.(1597-1599)TAT>TTT	p.Y533F	SIN3A_uc002baj.2_Missense_Mutation_p.Y533F|SIN3A_uc010uml.1_Missense_Mutation_p.Y533F	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	533	Interactions with SUDS3 and SAP130.|Interaction with NCOR1 (By similarity).				blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						CTCCTTTGGATAAGTTTCCAG	0.418000													3	31					0	0	0.000602	0	0
RAB11FIP3	9727	broad.mit.edu	37	16	555569	555569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr16:555569G>A	uc002chf.2	+	8	1780	c.1441G>A	c.(1441-1443)GCA>ACA	p.A481T	RAB11FIP3_uc010uuf.1_Missense_Mutation_p.A185T|RAB11FIP3_uc010uug.1_Missense_Mutation_p.A216T	NM_014700	NP_055515	O75154	RFIP3_HUMAN	rab11-family interacting protein 3 isoform 1	481					cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding				0		Hepatocellular(16;0.0218)				AAAGGACACGGCAGCCACCGG	0.642000													8	18					0	0	0.008291	0	0
OTOA	146183	broad.mit.edu	37	16	21730787	21730787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr16:21730787G>A	uc002djh.2	+	16	1769	c.1768G>A	c.(1768-1770)GAT>AAT	p.D590N	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.D511N|OTOA_uc002dji.2_Missense_Mutation_p.D266N|OTOA_uc010vbk.1_Missense_Mutation_p.D238N	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	604					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		CCATTTCCAGGATTTTCAGAA	0.498000													6	81					0	0	0.003080	0	0
PRKCB	5579	broad.mit.edu	37	16	24135199	24135199	+	Missense_Mutation	SNP	C	T	T	rs139055681	byFrequency	TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr16:24135199C>T	uc002dmd.2	+	9	1159	c.962C>T	c.(961-963)ACG>ATG	p.T321M	PRKCB_uc002dme.2_Missense_Mutation_p.T321M	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	321					apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GAAGAAAAGACGACCAACACT	0.483000													13	61					0	0	0.013537	0	0
SBK1	388228	broad.mit.edu	37	16	28328854	28328854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr16:28328854G>A	uc002dpd.2	+	2	931	c.142G>A	c.(142-144)GAC>AAC	p.D48N		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	48						cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						GGCCGCCAGCGACGTCACCAA	0.637000											OREG0023701	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	101					0	0	0.003271	0	0
SH2B1	25970	broad.mit.edu	37	16	28877902	28877902	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr16:28877902C>T	uc002dri.2	+	4	926	c.487C>T	c.(487-489)CGA>TGA	p.R163*	uc010vct.1_Intron|SH2B1_uc010vdc.1_Intron|SH2B1_uc002drj.2_Nonsense_Mutation_p.R163*|SH2B1_uc002drk.2_Nonsense_Mutation_p.R163*|SH2B1_uc002drl.2_Nonsense_Mutation_p.R163*|SH2B1_uc010vdd.1_Intron|SH2B1_uc010vde.1_Nonsense_Mutation_p.R163*|SH2B1_uc002drm.2_Nonsense_Mutation_p.R163*	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	163	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).|Interaction with RAC1 (By similarity).|Required for NGF signaling (By similarity).				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						TCGCTCTGTCCGAGGCTCAGT	0.657000													16	96					0	0	0.003954	0	0
JPH3	57338	broad.mit.edu	37	16	87678630	87678630	+	Silent	SNP	C	T	T	rs140186033	by1000genomes	TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr16:87678630C>T	uc002fkd.2	+	2	1403	c.1149C>T	c.(1147-1149)ATC>ATT	p.I383I	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	383	Ala-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		AGGCTGAGATCGCGGCTTCCA	0.672000													3	31					0	0	0.009096	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346628	89346628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr16:89346628C>T	uc002fmx.1	-	9	6783	c.6322G>A	c.(6322-6324)GGC>AGC	p.G2108S	ANKRD11_uc002fmy.1_Missense_Mutation_p.G2108S|ANKRD11_uc002fnc.1_Missense_Mutation_p.G2108S|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.G2065S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2108	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TGAGACAGGCCGCGGCTGCCG	0.731000													4	12					0	0	0.000602	0	0
NXN	64359	broad.mit.edu	37	17	726987	726988	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:726987_726988CC>TT	uc002fsa.2	-	3	588_589	c.496_497GG>AA	c.(496-498)GGA>AAA	p.G166K	NXN_uc002fsb.1_Missense_Mutation_p.G53K|NXN_uc010vqd.1_5'Flank|NXN_uc002frz.2_5'UTR|NXN_uc010vqe.1_Missense_Mutation_p.G58K	NM_022463	NP_071908	Q6DKJ4	NXN_HUMAN	nucleoredoxin	166					cell differentiation|cell redox homeostasis|multicellular organismal development|Wnt receptor signaling pathway	cytosol|nucleus	protein-disulfide reductase activity			ovary(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (25;0.0237)		GGGTTTCGGTCCCCAGGGGAAC	0.545000													6	57					0	0	0.004672	0	0
OR3A3	8392	broad.mit.edu	37	17	3324457	3324457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:3324457C>T	uc010vrd.1	+	1	596	c.596C>T	c.(595-597)TCC>TTC	p.S199F		NM_012373	NP_036505	P47888	OR3A3_HUMAN	olfactory receptor, family 3, subfamily A,	199	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCTCCTGCTCCAGCACCCAA	0.552000													15	66					0	0	0.006122	0	0
SPNS3	201305	broad.mit.edu	37	17	4349486	4349486	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:4349486C>T	uc002fxt.2	+	4	590	c.546C>T	c.(544-546)CCC>CCT	p.P182P	SPNS3_uc002fxu.2_Silent_p.P55P	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	182	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						TCTTTATCCCCGTTGGAAGGT	0.607000													6	144					0	0	0.006214	0	0
USP6	9098	broad.mit.edu	37	17	5048750	5048751	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:5048750_5048751CC>TT	uc002gau.1	+	27	4273_4274	c.2043_2044CC>TT	c.(2041-2046)TTCCAT>TTTTAT	p.H682Y	USP6_uc002gav.1_Missense_Mutation_p.H682Y|USP6_uc010ckz.1_Missense_Mutation_p.H365Y	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	682					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						TGGATTTGTTCCATGGGCAGCT	0.386000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								10	48					0	0	0.004672	0	0
UBB	7314	broad.mit.edu	37	17	16285382	16285382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:16285382G>A	uc002gpx.2	+	2	299	c.161G>A	c.(160-162)CGT>CAT	p.R54H	UBB_uc010vwe.1_Missense_Mutation_p.R54H	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	54	Ubiquitin-like 1.	Activating enzyme.			activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding	p.R54C(1)		skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		GAAGATGGCCGTACTCTTTCT	0.547000													4	125					0	0	0.001168	0	0
NOS2	4843	broad.mit.edu	37	17	26115904	26115904	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:26115904C>T	uc002gzu.2	-	4	513	c.249G>A	c.(247-249)CGG>CGA	p.R83R	NOS2_uc010crh.1_Silent_p.R83R|NOS2_uc010wab.1_Silent_p.R83R	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	83					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	TCCTCACATGCCGTGGGGAGG	0.527000													16	232					0	0	0.012319	0	0
UNC119	9094	broad.mit.edu	37	17	26874713	26874714	+	Missense_Mutation	DNP	GG	AA	AA	rs150932837		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:26874713_26874714GG>AA	uc002hbk.2	-	4	662_663	c.591_592CC>TT	c.(589-594)CCCCCT>CCTTCT	p.P198S	UNC119_uc002hbm.2_Missense_Mutation_p.P198S|UNC119_uc002hbl.1_RNA	NM_005148	NP_005139	Q13432	U119A_HUMAN	unc119 (C.elegans) homolog isoform a	198					phototransduction|synaptic transmission|visual perception	cytosol|soluble fraction					0	Lung NSC(42;0.00431)					TCGGAGAGAGGGGGGAAGTCGT	0.599000											OREG0024277	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	74					0	0	0.004672	0	0
TMIGD1	388364	broad.mit.edu	37	17	28651902	28651902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:28651902C>T	uc002hfa.1	-	4	645	c.572G>A	c.(571-573)GGA>GAA	p.G191E	TMIGD1_uc010csh.1_Missense_Mutation_p.G191E	NM_206832	NP_996663	Q6UXZ0	TMIG1_HUMAN	transmembrane and immunoglobulin domain	191	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane					0						ACTGTAGGTTCCGTTGTCAGG	0.388000													9	86					0	0	0.013537	0	0
ACCN1	40	broad.mit.edu	37	17	32483090	32483090	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:32483090C>T	uc002hhu.2	-	1	736	c.462G>A	c.(460-462)CTG>CTA	p.L154L		NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	154	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	GCAGGAACTCCAGCATGCTGA	0.577000													30	134					0	0	0.013726	0	0
CCL11	6356	broad.mit.edu	37	17	32614164	32614164	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:32614164C>T	uc002hia.1	+	2	267	c.126C>T	c.(124-126)CCC>CCT	p.P42P		NM_002986	NP_002977	P51671	CCL11_HUMAN	small inducible cytokine A11 precursor	42					cell adhesion|cellular calcium ion homeostasis|immune response|positive regulation of actin filament polymerization|positive regulation of cell migration|positive regulation of endothelial cell proliferation|positive regulation of Rac GTPase activity|protein phosphorylation|response to radiation|response to virus|signal transduction	extracellular space	chemokine activity				0	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		GGAAGATACCCCTTCAGCGAC	0.433000													4	58					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	17	39296152	39296152	+	RNA	SNP	A	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:39296152A>G	uc010cxk.1	-	1		c.552T>C								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		AGCACAAGGGACGGGGGCAGG	0.507000													3	18					0	0	0.004672	0	0
KRT16	3868	broad.mit.edu	37	17	39768903	39768903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:39768903G>A	uc002hxg.3	-	1	177	c.38C>T	c.(37-39)TCC>TTC	p.S13F	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	13	Head.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GCCCTTCATGGAGCTGGAGGA	0.662000													3	26					0	0	0.004672	0	0
TBX2	6909	broad.mit.edu	37	17	59485578	59485578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:59485578C>T	uc010wox.1	+	7	2131	c.1850C>T	c.(1849-1851)CCC>CTC	p.P617L	TBX2_uc002ize.2_3'UTR|TBX2_uc002izg.2_Missense_Mutation_p.P463L	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	617					cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						AGTGCCCGGCCCCGACTGCGT	0.483000													13	73					0	0	0.004007	0	0
TMEM105	284186	broad.mit.edu	37	17	79287763	79287763	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:79287763C>T	uc002kad.1	-	3	628	c.78G>A	c.(76-78)GTG>GTA	p.V26V		NM_178520	NP_848615	Q8N8V8	TM105_HUMAN	transmembrane protein 105	26	Helical; (Potential).					integral to membrane				ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.0892)			GCTGCCCGATCACATTTCCTG	0.602000													24	95					0	0	0.013726	0	0
ZNF750	79755	broad.mit.edu	37	17	80789224	80789224	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:80789224G>A	uc002kga.2	-	2	1418	c.1107C>T	c.(1105-1107)GAC>GAT	p.D369D	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	369						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TTCTGTTGGGGTCCGAAGGGT	0.557000													18	191					0	0	0.012319	0	0
ELP2	55250	broad.mit.edu	37	18	33744557	33744557	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr18:33744557G>C	uc002kzk.1	+	18	1891	c.1881G>C	c.(1879-1881)AAG>AAC	p.K627N	ELP2_uc010xcg.1_Missense_Mutation_p.K692N|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Missense_Mutation_p.K601N|ELP2_uc010xch.1_Missense_Mutation_p.K622N|ELP2_uc002kzn.1_Missense_Mutation_p.K557N|ELP2_uc002kzo.1_Missense_Mutation_p.K557N	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	627	WD 11.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						CTAATGAGAAGTTCTTACTAG	0.423000													5	54					0	0	0.001168	0	0
TCEB3C	162699	broad.mit.edu	37	18	44549182	44549182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr18:44549182C>T	uc010dnr.2	-	1	1117	c.1117G>A	c.(1117-1119)GAT>AAT	p.D373N	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_001100817	NP_001094287	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	373	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TACGGCTGATCGGGCGTCCAC	0.582000													9	736					0	0	0.010729	0	0
ME2	4200	broad.mit.edu	37	18	48473491	48473491	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr18:48473491C>T	uc002ley.2	+	16	1948	c.1692C>T	c.(1690-1692)TCC>TCT	p.S564S	ME2_uc010dpd.2_3'UTR	NM_002396	NP_002387	P23368	MAOM_HUMAN	malic enzyme 2, NAD(+)-dependent, mitochondrial	564					malate metabolic process	mitochondrial matrix	electron carrier activity|malate dehydrogenase (decarboxylating) activity|malate dehydrogenase (oxaloacetate-decarboxylating) activity|metal ion binding|NAD binding				0		Colorectal(6;0.0273)|all_epithelial(6;0.118)		Colorectal(21;0.0313)|READ - Rectum adenocarcinoma(32;0.105)|STAD - Stomach adenocarcinoma(97;0.184)	NADH(DB00157)	AATATGATTCCCTGCTGCCAG	0.433000													25	64					0	0	0.010818	0	0
DCC	1630	broad.mit.edu	37	18	50278624	50278624	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr18:50278624C>T	uc002lfe.1	+	2	879	c.292C>T	c.(292-294)CTG>TTG	p.L98L	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	98	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGGGTCTCTGCTGATACAAAA	0.458000													7	62					0	0	0.004482	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2408369	2408369	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:2408369G>A	uc010xgx.1	+	7	756	c.756G>A	c.(754-756)ACG>ACA	p.T252T	TMPRSS9_uc002lvv.1_Silent_p.T286T	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	252	Extracellular (Potential).|Peptidase S1 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGACCCGACGAAGTGGGTGG	0.502000													16	53					0	0	0.014323	0	0
CELF5	60680	broad.mit.edu	37	19	3282252	3282252	+	Silent	SNP	C	T	T	rs144542912		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:3282252C>T	uc002lxm.2	+	7	916	c.879C>T	c.(877-879)ATC>ATT	p.I293I	CELF5_uc002lxl.1_Silent_p.I293I|CELF5_uc010dtj.1_Silent_p.I293I|CELF5_uc010xhg.1_Silent_p.I179I|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	293				I -> V (in Ref. 5; AAK07476).	mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						CCACACCCATCGCTCCTGCCT	0.672000													5	17					0	0	0.000602	0	0
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:12501446T>C	uc010dyt.2	-	4	1916	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	589	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCTTACATTCATACGGGTT	0.413000													3	26					0	0	0.004672	0	0
ZNF99	7652	broad.mit.edu	37	19	22939426	22939426	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:22939426C>T	uc010xrh.1	-	7	2745	c.2745G>A	c.(2743-2745)CCG>CCA	p.P915P		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CACATTTGTACGGTTTCTCCC	0.368000													4	44					0	0	0.000602	0	0
CD177	57126	broad.mit.edu	37	19	43859822	43859822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:43859822C>T	uc002owi.2	+	4	431	c.389C>T	c.(388-390)TCC>TTC	p.S130F	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	130					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				GACCCAGGATCCTTGAGGTGC	0.547000													10	89					0	0	0.010729	0	0
ZNF347	84671	broad.mit.edu	37	19	53644380	53644380	+	Silent	SNP	T	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:53644380T>C	uc002qbb.1	-	5	1770	c.1701A>G	c.(1699-1701)AAA>AAG	p.K567K	ZNF347_uc010eql.1_Silent_p.K568K|ZNF347_uc002qbc.1_Silent_p.K568K	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	567					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		ATTTGTAAGGTTTTTCTCCAG	0.413000													4	143					0	0	0.001168	0	0
ZNF845	91664	broad.mit.edu	37	19	53855364	53855365	+	Missense_Mutation	DNP	CA	TG	TG			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:53855364_53855365CA>TG	uc010ydv.1	+	4	1553_1554	c.1436_1437CA>TG	c.(1435-1437)ACA>ATG	p.T479M	ZNF845_uc010ydw.1_Missense_Mutation_p.T479M	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	479	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGTCAGACATCATCCCTTG	0.381000													3	67					0	0	0.004672	0	0
NLRP9	338321	broad.mit.edu	37	19	56243696	56243696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:56243696C>T	uc002qly.2	-	2	1529	c.1501G>A	c.(1501-1503)GAA>AAA	p.E501K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	501						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		ACGATTTCTTCTGTTGAAATT	0.453000													20	74					0	0	0.010504	0	0
USP29	57663	broad.mit.edu	37	19	57640501	57640501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr19:57640501C>T	uc002qny.2	+	4	814	c.458C>T	c.(457-459)TCA>TTA	p.S153L		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	153					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATGTCAAAATCACCAACACAT	0.363000													7	43					0	0	0.003080	0	0
SMC6	79677	broad.mit.edu	37	2	17846834	17846834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:17846834G>A	uc002rco.2	-	28	3504	c.3208C>T	c.(3208-3210)CCT>TCT	p.P1070S	SMC6_uc010exo.2_Missense_Mutation_p.P1070S|SMC6_uc002rcn.2_Missense_Mutation_p.P1070S	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	1070					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CCTCTTTCAGGATCAGACATT	0.368000													3	54					0	0	0.009096	0	0
XDH	7498	broad.mit.edu	37	2	31588407	31588407	+	Silent	SNP	G	T	T	rs143539472	byFrequency	TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:31588407G>T	uc002rnv.1	-	23	2539	c.2460C>A	c.(2458-2460)ACC>ACA	p.T820T		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	820					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CAGGGCGGCCGGTCCTGGGGG	0.552000													29	157					1.32136e-16	1.35735e-16	0.008740	1	0
XDH	7498	broad.mit.edu	37	2	31593226	31593226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:31593226C>T	uc002rnv.1	-	18	2054	c.1975G>A	c.(1975-1977)GAT>AAT	p.D659N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	659					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CTTACCTTATCCTTCGCAAAG	0.348000													6	37					0	0	0.001168	0	0
NAGK	55577	broad.mit.edu	37	2	71303799	71303799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:71303799C>T	uc002shp.3	+	8	1139	c.733C>T	c.(733-735)CAC>TAC	p.H245Y	NAGK_uc010fea.2_RNA|NAGK_uc002shq.3_Missense_Mutation_p.H96Y|NAGK_uc002shr.2_Missense_Mutation_p.H194Y	NM_017567	NP_060037	Q9UJ70	NAGK_HUMAN	N-Acetylglucosamine kinase	245					N-acetylglucosamine metabolic process|N-acetylmannosamine metabolic process		ATP binding|N-acetylglucosamine kinase activity|protein binding				0					N-Acetyl-D-glucosamine(DB00141)	GCTGGGCAGACACATCGTAGC	0.592000													8	81					0	0	0.004482	0	0
FER1L5	90342	broad.mit.edu	37	2	97366109	97366109	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:97366109G>A	uc010fia.2	+	44	5052	c.5052G>A	c.(5050-5052)AAG>AAA	p.K1684K	FER1L5_uc002sws.3_Silent_p.K402K|FER1L5_uc002swt.3_Silent_p.K402K|FER1L5_uc010yus.1_Silent_p.K401K	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	1684						integral to membrane				ovary(1)	1						GACCCAAGAAGGAACGCCTTG	0.587000													10	64					0	0	0.001855	0	0
TMEM131	23505	broad.mit.edu	37	2	98382600	98382600	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:98382600A>T	uc002syh.3	-	35	4929	c.4700T>A	c.(4699-4701)GTT>GAT	p.V1567D		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1567						integral to membrane				ovary(4)|central_nervous_system(2)	6						GTGAACTGGAACGGAATCCCA	0.507000													10	56					0	0	0.001855	0	0
RGPD4	285190	broad.mit.edu	37	2	108489194	108489194	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:108489194G>A	uc010ywk.1	+	20	4816	c.4734G>A	c.(4732-4734)TTG>TTA	p.L1578L	RGPD4_uc002tdu.2_Silent_p.L765L|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1578					intracellular transport		binding			skin(2)	2						ATGCATCTTTGAAAAGTAACA	0.353000													26	97					0	0	0.006320	0	0
CCDC138	165055	broad.mit.edu	37	2	109463245	109463246	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:109463245_109463246GG>AA	uc002ten.1	+	12	1435_1436	c.1375_1376GG>AA	c.(1375-1377)GGA>AAA	p.G459K	CCDC138_uc002teo.1_Missense_Mutation_p.G459K|CCDC138_uc002tep.1_Missense_Mutation_p.G143K|CCDC138_uc010fjm.1_Missense_Mutation_p.G143K	NM_144978	NP_659415	Q96M89	CC138_HUMAN	coiled-coil domain containing 138	459											0						CATTTTTAAAGGAGTGGTAACT	0.347000													6	43					0	0	0.004672	0	0
EDAR	10913	broad.mit.edu	37	2	109539872	109539872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:109539872C>T	uc002teq.3	-	5	825	c.394G>A	c.(394-396)GGC>AGC	p.G132S	EDAR_uc010fjn.2_Missense_Mutation_p.G132S|EDAR_uc010yws.1_Missense_Mutation_p.G132S	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	132	TNFR-Cys 3.|Extracellular (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						CAGACCATGCCATAGATGTTC	0.547000													18	205					0	0	0.010504	0	0
FBLN7	129804	broad.mit.edu	37	2	112940491	112940491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:112940491G>A	uc002tho.1	+	6	1065	c.794G>A	c.(793-795)GGG>GAG	p.G265E	FBLN7_uc002thn.2_Missense_Mutation_p.G265E|FBLN7_uc010fki.1_Missense_Mutation_p.G219E|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	265	EGF-like 2; calcium-binding (Potential).				cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						CTGGCTGACGGGAAGAGCTGT	0.662000													4	134					0	0	0.001168	0	0
NCKAP5	344148	broad.mit.edu	37	2	133539985	133539985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:133539985G>A	uc002ttp.2	-	14	4773	c.4399C>T	c.(4399-4401)CCC>TCC	p.P1467S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1467							protein binding				0						GGTGAGAGGGGGGCTTCTGAA	0.488000													7	15					0	0	0.001984	0	0
MBD5	55777	broad.mit.edu	37	2	149226818	149226818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:149226818C>T	uc002twm.3	+	9	2294	c.1306C>T	c.(1306-1308)CCT>TCT	p.P436S	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P436S|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	436						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CTCCCTGTCCCCTTCTCCAGT	0.488000													3	21					0	0	0.004672	0	0
GALNT13	114805	broad.mit.edu	37	2	155158006	155158006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:155158006C>T	uc002tyr.3	+	9	1627	c.1060C>T	c.(1060-1062)CCT>TCT	p.P354S	GALNT13_uc002tyt.3_Missense_Mutation_p.P354S|GALNT13_uc010foc.1_Missense_Mutation_p.P173S|GALNT13_uc010fod.2_Missense_Mutation_p.P107S	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	354	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						ATACACTTTTCCTGGTGGCAC	0.438000													14	116					0	0	0.007413	0	0
SCN3A	6328	broad.mit.edu	37	2	165953813	165953813	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:165953813C>T	uc002ucx.2	-	23	4680	c.4188G>A	c.(4186-4188)GTG>GTA	p.V1396V	SCN3A_uc002ucy.2_Silent_p.V1347V|SCN3A_uc002ucz.2_Silent_p.V1347V|SCN3A_uc002uda.1_Silent_p.V1216V|SCN3A_uc002udb.1_Silent_p.V1216V	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1396						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AGTTTACTTTCACGTTTTTCC	0.403000													10	27					0	0	0.013537	0	0
SCN2A	6326	broad.mit.edu	37	2	166210819	166210819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:166210819G>A	uc002udc.2	+	17	3327	c.3037G>A	c.(3037-3039)GGA>AGA	p.G1013R	SCN2A_uc002udd.2_Missense_Mutation_p.G1013R|SCN2A_uc002ude.2_Missense_Mutation_p.G1013R	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1013	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GATGCAGAAAGGAATCGATTT	0.368000													8	56					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179612246	179612246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:179612246G>A	uc002unb.2	-	46	15105	c.14881C>T	c.(14881-14883)CGT>TGT	p.R4961C	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAAGTGGACGACCTAGTGAT	0.408000													4	20					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179616450	179616450	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:179616450G>A	uc002unb.2	-	46	10901	c.10677C>T	c.(10675-10677)CAC>CAT	p.H3559H	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	3558							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGAGTGATGGTGTAAATCAC	0.413000													4	20					0	0	0.000602	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886617	228886617	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:228886617G>A	uc002vpq.2	-	6	554	c.507C>T	c.(505-507)AAC>AAT	p.N169N	SPHKAP_uc002vpp.2_Silent_p.N169N|SPHKAP_uc010zlx.1_Silent_p.N169N	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	169						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGATGATGCAGTTGGTACTGT	0.443000													7	31					0	0	0.006214	0	0
PID1	55022	broad.mit.edu	37	2	229890687	229890687	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:229890687G>A	uc002vpr.3	-	3	452	c.414C>T	c.(412-414)ATC>ATT	p.I138I	PID1_uc002vps.3_Silent_p.I136I|PID1_uc002vpt.3_Silent_p.I105I|PID1_uc002vpu.3_Silent_p.I56I	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	138	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		GGAATGGCCGGATTTCCAGGA	0.567000													5	63					0	0	0.001984	0	0
SP140	11262	broad.mit.edu	37	2	231109788	231109788	+	Silent	SNP	T	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:231109788T>G	uc002vql.2	+	6	772	c.657T>G	c.(655-657)GGT>GGG	p.G219G	SP140_uc010zma.1_RNA|SP140_uc002vqk.2_Silent_p.G219G|SP140_uc002vqn.2_Splice_Site_p.V219_splice|SP140_uc002vqm.2_Silent_p.G219G|SP140_uc010fxl.2_Silent_p.G219G	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	219				Missing (in Ref. 2; AAC50817).	defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TACTACCAGGTGGGGGAGGTA	0.453000													4	18					0	0	0.000602	0	0
PTMA	5757	broad.mit.edu	37	2	232576081	232576081	+	Silent	SNP	T	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:232576081T>C	uc002vsc.3	+	2	251	c.69T>C	c.(67-69)GTT>GTC	p.V23V	PTMA_uc002vsb.3_Silent_p.V23V|PTMA_uc010zmf.1_RNA|MIR1244_hsa-mir-1244-1|MI0006379_5'Flank	NM_001099285	NP_001092755	P06454	PTMA_HUMAN	prothymosin, alpha isoform 1	23					transcription, DNA-dependent	nucleus					0		Renal(207;0.0112)|all_hematologic(139;0.0315)|Acute lymphoblastic leukemia(138;0.0921)|all_lung(227;0.142)		Epithelial(121;1.75e-12)|BRCA - Breast invasive adenocarcinoma(100;0.00221)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		AGAAGGAAGTTGTGGAAGAGG	0.502000													6	59					0	0	0.001984	0	0
GPC1	2817	broad.mit.edu	37	2	241404942	241404942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:241404942G>A	uc002vyw.3	+	8	1542	c.1321G>A	c.(1321-1323)GAG>AAG	p.E441K		NM_002081	NP_002072	P35052	GPC1_HUMAN	glypican 1 precursor	441					axon guidance	anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;4.51e-33)|all cancers(36;1.74e-30)|OV - Ovarian serous cystadenocarcinoma(60;4.73e-15)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;9.1e-06)|Colorectal(34;0.000487)|Lung(119;0.0013)|LUSC - Lung squamous cell carcinoma(224;0.0154)|COAD - Colon adenocarcinoma(134;0.0194)|READ - Rectum adenocarcinoma(96;0.0949)		CAACAACCCCGAGGTGGAGGT	0.622000													14	103					0	0	0.006122	0	0
WFDC12	128488	broad.mit.edu	37	20	43752814	43752814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr20:43752814C>T	uc002xnf.1	-	2	190	c.172G>A	c.(172-174)GAA>AAA	p.E58K		NM_080869	NP_543145	Q8WWY7	WFD12_HUMAN	WAP four-disulfide core domain 12 precursor	58	WAP.				defense response to bacterium	extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CACTTCCTTTCCCCCAGACAG	0.547000													14	78					0	0	0.003163	0	0
KCNB1	3745	broad.mit.edu	37	20	47989612	47989612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr20:47989612C>T	uc002xur.1	-	2	2649	c.2485G>A	c.(2485-2487)GAA>AAA	p.E829K	KCNB1_uc002xus.1_Missense_Mutation_p.E829K	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	829	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TTGCACTTTTCCTGACCACTG	0.522000													6	50					0	0	0.001984	0	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48700666	48700666	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr20:48700666C>T	uc002xvf.2	-	7	1127	c.966G>A	c.(964-966)GTG>GTA	p.V322V	UBE2V1_uc002xvb.2_RNA|UBE2V1_uc002xva.2_Silent_p.V99V|UBE2V1_uc002xvc.2_Silent_p.V55V|UBE2V1_uc002xvd.2_Silent_p.V122V|UBE2V1_uc002xve.2_Silent_p.V122V	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	99					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			AACAACTTACCACTCCATTAG	0.388000													7	39					0	0	0.001984	0	0
PCK1	5105	broad.mit.edu	37	20	56137870	56137870	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr20:56137870G>A	uc002xyn.3	+	4	688	c.525G>A	c.(523-525)CGG>CGA	p.R175R	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	175					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			TCATGACGCGGATGGGCACGC	0.572000													15	111					0	0	0.004990	0	0
YTHDF1	54915	broad.mit.edu	37	20	61835092	61835092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr20:61835092G>A	uc002yeh.2	-	4	494	c.200C>T	c.(199-201)CCT>CTT	p.P67L	YTHDF1_uc011aaq.1_Missense_Mutation_p.P17L	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	67										ovary(2)	2						GAGGGAGTAAGGAAATCCAAT	0.512000													21	59					0	0	0.012319	0	0
PRPF6	24148	broad.mit.edu	37	20	62655924	62655924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr20:62655924C>T	uc002yho.2	+	14	1954	c.1786C>T	c.(1786-1788)CTC>TTC	p.L596F	PRPF6_uc002yhp.2_Missense_Mutation_p.L596F	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	596	HAT 5.				assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					CCTGGAAGCACTCCTGCAGAG	0.622000													16	64					0	0	0.010504	0	0
DSCAM	1826	broad.mit.edu	37	21	41684283	41684283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr21:41684283G>A	uc002yyq.1	-	9	2239	c.1787C>T	c.(1786-1788)CCG>CTG	p.P596L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	596	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TATGAAAGGCGGAACTGCAAG	0.448000													3	18					0	0	0.009096	0	0
CLTCL1	8218	broad.mit.edu	37	22	19211483	19211483	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr22:19211483G>A	uc002zpb.2	-	14	2298	c.2223C>T	c.(2221-2223)ATC>ATT	p.I741I	CLTCL1_uc011agv.1_Silent_p.I741I|CLTCL1_uc011agw.1_Silent_p.I741I	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	741	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					CCACCTCCTTGATCTGCCCTG	0.522000			T	?	ALCL								11	54					0	0	0.013537	0	0
CRYBB1	1414	broad.mit.edu	37	22	27008142	27008142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr22:27008142C>T	uc003acy.1	-	3	263	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_001887	NP_001878	P53674	CRBB1_HUMAN	crystallin, beta B1	65	Beta/gamma crystallin 'Greek key' 1.				visual perception		structural constituent of eye lens			ovary(1)	1						TTTTCCAGTTCGAAGACCACC	0.537000													20	79					0	0	0.003954	0	0
OSBP2	23762	broad.mit.edu	37	22	31266588	31266588	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr22:31266588C>T	uc003aiy.1	+	3	1130	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I	OSBP2_uc011ala.1_Silent_p.I177I|OSBP2_uc010gwc.1_Silent_p.I169I|OSBP2_uc003aix.1_Silent_p.I342I|OSBP2_uc011alb.1_Silent_p.I342I|OSBP2_uc003aiz.1_Silent_p.I342I|OSBP2_uc003aja.1_5'UTR|OSBP2_uc011alc.1_Silent_p.I84I	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	342					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						GCCTCAAGATCCCATCTGAGA	0.577000													7	49					0	0	0.003080	0	0
PLA2G3	50487	broad.mit.edu	37	22	31536101	31536101	+	Silent	SNP	G	A	A	rs148262601		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr22:31536101G>A	uc003aka.2	-	1	369	c.240C>T	c.(238-240)ACC>ACT	p.T80T		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	80					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						CGTAGGCTGCGGTGAGCTCCG	0.632000													12	80					0	0	0.002450	0	0
MKL1	57591	broad.mit.edu	37	22	40816901	40816901	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr22:40816901C>G	uc003ayv.1	-	7	1038	c.831G>C	c.(829-831)CAG>CAC	p.Q277H	MKL1_uc003ayw.1_Missense_Mutation_p.Q277H|MKL1_uc010gye.1_Missense_Mutation_p.Q277H|MKL1_uc010gyf.1_Missense_Mutation_p.Q227H	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	277	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GCTGCTGCTGCTGGTTGAGGA	0.657000			T	RBM15	acute megakaryocytic leukemia								4	94					0	0	0.001984	0	0
SLC6A11	6538	broad.mit.edu	37	3	10861262	10861262	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:10861262G>A	uc003bvz.2	+	2	403	c.369G>A	c.(367-369)AGG>AGA	p.R123R	SLC6A11_uc003bvy.1_Silent_p.R123R	NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	123					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		CGTGTTGGAGGAAAGTTTGCC	0.398000													12	77					0	0	0.006122	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059590	11059590	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:11059590G>A	uc010hdq.2	+	4	711	c.300G>A	c.(298-300)CTG>CTA	p.L100L		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	100	Helical; Name=2; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	TCTTCCTGCTGGAGTGCTCCC	0.577000													27	160					0	0	0.008361	0	0
GALNTL2	117248	broad.mit.edu	37	3	16217065	16217066	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:16217065_16217066GG>AA	uc003car.3	+	1	882_883	c.407_408GG>AA	c.(406-408)GGG>GAA	p.G136E	GALNTL2_uc003caq.3_Intron	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	136	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						AGGGACTGGGGGGCTGATGAGG	0.639000													8	29					0	0	0.004672	0	0
TRANK1	9881	broad.mit.edu	37	3	36873580	36873580	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:36873580C>T	uc003cgj.2	-	12	6014	c.5712G>A	c.(5710-5712)AAG>AAA	p.K1904K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2454					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCCCAAGCTCCTTGTCCTTCT	0.512000													11	60					0	0	0.001855	0	0
SCN5A	6331	broad.mit.edu	37	3	38601810	38601810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:38601810C>T	uc003cio.2	-	23	4267	c.4073G>A	c.(4072-4074)GGG>GAG	p.G1358E	SCN5A_uc003cin.2_Missense_Mutation_p.G1357E|SCN5A_uc003cil.3_Missense_Mutation_p.G1358E|SCN5A_uc010hhi.2_Missense_Mutation_p.G1358E|SCN5A_uc010hhk.2_Missense_Mutation_p.G1357E|SCN5A_uc011ayr.1_Missense_Mutation_p.G1304E|SCN5A_uc010hhj.1_Missense_Mutation_p.G968E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1358	Helical; Name=S5 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CCCAAACTTCCCCGCAAAGAG	0.542000													12	85					0	0	0.004007	0	0
KIF15	56992	broad.mit.edu	37	3	44847370	44847370	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:44847370G>A	uc003cnx.3	+	16	2012	c.1863G>A	c.(1861-1863)CAG>CAA	p.Q621Q	KIF15_uc010hiq.2_Silent_p.Q524Q|KIF15_uc003cny.1_Silent_p.Q256Q	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	621	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		CAGAGCTTCAGTCTTTGCAAA	0.313000													8	80					0	0	0.004482	0	0
MST1	4485	broad.mit.edu	37	3	49722209	49722209	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:49722209C>T	uc003cxg.2	-	15	1803	c.1731G>A	c.(1729-1731)GGG>GGA	p.G577G		NM_020998	NP_066278	P26927	HGFL_HUMAN	macrophage stimulating 1 (hepatocyte growth	563	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		AGCCTGAGGGCCCACACACCA	0.612000													10	70					0	0	0.013537	0	0
UBA7	7318	broad.mit.edu	37	3	49850559	49850559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:49850559C>T	uc003cxr.2	-	4	574	c.403G>A	c.(403-405)GTG>ATG	p.V135M		NM_003335	NP_003326	P41226	UBA7_HUMAN	ubiquitin-like modifier activating enzyme 7	135	2 approximate repeats.|1-1.				ISG15-protein conjugation|negative regulation of type I interferon production	cytosol	ATP binding|ISG15 activating enzyme activity|ligase activity			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(193;3.58e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		AAGGTGCCCACCTTCAGCTGC	0.582000													16	54					0	0	0.010504	0	0
MAGI1	9223	broad.mit.edu	37	3	65342720	65342720	+	Missense_Mutation	SNP	G	A	A	rs139105394		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:65342720G>A	uc003dmn.2	-	23	4248	c.3722C>T	c.(3721-3723)TCA>TTA	p.S1241L	MAGI1_uc003dmm.2_3'UTR	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1270					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		GGACTCCAATGACGGATGCTG	0.617000													29	145					0	0	0.004289	0	0
TRAT1	50852	broad.mit.edu	37	3	108572633	108572633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:108572633C>T	uc003dxi.1	+	6	614	c.470C>T	c.(469-471)TCC>TTC	p.S157F	TRAT1_uc010hpx.1_Missense_Mutation_p.S120F	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	157	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						GACAGTTTCTCCCCAGAAAGC	0.443000													9	51					0	0	0.004482	0	0
SEMA5B	54437	broad.mit.edu	37	3	122632785	122632785	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:122632785G>A	uc003efz.1	-	15	2356	c.2052C>T	c.(2050-2052)TTC>TTT	p.F684F	SEMA5B_uc011bju.1_Silent_p.F626F|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.F684F|SEMA5B_uc010hro.1_Silent_p.F626F|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	684	Extracellular (Potential).|TSP type-1 1.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GGCGGACCTGGAAGCCGATGC	0.687000													29	126					0	0	0.004289	0	0
TMCC1	23023	broad.mit.edu	37	3	129547017	129547017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:129547017C>T	uc003emz.3	-	4	706	c.205G>A	c.(205-207)GAT>AAT	p.D69N	TMCC1_uc010htg.2_Intron	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	69						integral to membrane				skin(1)	1						TGCTGCACATCATGTGGAGAC	0.502000													8	65					0	0	0.006214	0	0
ATR	545	broad.mit.edu	37	3	142172041	142172041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:142172041C>T	uc003eux.3	-	46	7812	c.7690G>A	c.(7690-7692)GAA>AAA	p.E2564K	ATR_uc003euy.1_Missense_Mutation_p.E450K	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2564	PI3K/PI4K.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TTACTCCATTCCACAAGAGGA	0.363000								Other_conserved_DNA_damage_response_genes					7	56					0	0	0.003080	0	0
GFM1	85476	broad.mit.edu	37	3	158383129	158383129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:158383129G>A	uc003fce.2	+	12	1491	c.1384G>A	c.(1384-1386)GAT>AAT	p.D462N	GFM1_uc003fcd.2_Missense_Mutation_p.D462N|GFM1_uc003fcf.2_RNA|GFM1_uc003fcg.2_Missense_Mutation_p.D393N	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	G elongation factor, mitochondrial 1 precursor	462					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			ovary(3)|central_nervous_system(1)	4			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			TTTAAAGAACGATCTGGAAAA	0.313000													4	14					0	0	0.000602	0	0
OTOL1	131149	broad.mit.edu	37	3	161220127	161220127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:161220127C>T	uc011bpb.1	+	3	487	c.487C>T	c.(487-489)CCA>TCA	p.P163S		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	163	Collagen-like 1.					collagen					0						CCAAGGAGTTCCAGGATACCC	0.423000													3	33					0	0	0.009096	0	0
ECE2	9718	broad.mit.edu	37	3	184008435	184008435	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:184008435C>T	uc003fni.3	+	15	2138	c.2100C>T	c.(2098-2100)TTC>TTT	p.F700F	ECE2_uc011brh.1_Silent_p.F553F|ECE2_uc003fnl.3_Silent_p.F628F|ECE2_uc003fnm.3_Silent_p.F582F|ECE2_uc003fnk.3_Silent_p.F553F|ECE2_uc011bri.1_Silent_p.F615F|ECE2_uc010hxv.2_Silent_p.F344F	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	700	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGGCCCCCTTCTATGCCCGCA	0.408000													20	154					0	0	0.002780	0	0
MUC4	4585	broad.mit.edu	37	3	195515025	195515025	+	Silent	SNP	A	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:195515025A>G	uc011bto.1	-	2	3886	c.3426T>C	c.(3424-3426)ACT>ACC	p.T1142T	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1019	Repeat.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		ATACTGAGGAAGTGTCGGTGA	0.562000													3	5					0	0	0.001168	0	0
UBXN7	26043	broad.mit.edu	37	3	196098779	196098779	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr3:196098779G>A	uc003fwm.3	-	6	678	c.603C>T	c.(601-603)TTC>TTT	p.F201F	UBXN7_uc003fwn.3_Silent_p.F53F|UBXN7_uc010iae.2_Silent_p.F39F	NM_015562	NP_056377	O94888	UBXN7_HUMAN	UBX domain containing 7	201							protein binding			ovary(2)|pancreas(1)	3						GCCAGAAAATGAAATGTTCCC	0.383000													16	118					0	0	0.012319	0	0
WDFY3	23001	broad.mit.edu	37	4	85660250	85660251	+	Missense_Mutation	DNP	CC	TT	TT	rs140312391		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr4:85660250_85660251CC>TT	uc003hpd.2	-	40	6894_6895	c.6486_6487GG>AA	c.(6484-6489)CTGGAA>CTAAAA	p.E2163K		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2163						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GCTTCTGCTTCCAGTCCAAATC	0.401000													10	45					0	0	0.004672	0	0
ANK2	287	broad.mit.edu	37	4	114203843	114203843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr4:114203843C>T	uc003ibe.3	+	18	1994	c.1894C>T	c.(1894-1896)CCG>TCG	p.P632S	ANK2_uc003ibd.3_Missense_Mutation_p.P611S|ANK2_uc003ibf.3_Missense_Mutation_p.P632S|ANK2_uc003ibc.2_Missense_Mutation_p.P608S|ANK2_uc011cgb.1_Missense_Mutation_p.P647S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	632	ANK 19.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGGCTATACTCCGTTACATAT	0.348000													5	13					0	0	0.000602	0	0
DDX60L	91351	broad.mit.edu	37	4	169362542	169362542	+	Missense_Mutation	SNP	G	A	A	rs34420455		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr4:169362542G>A	uc003irq.3	-	10	1461	c.1240C>T	c.(1240-1242)CCT>TCT	p.P414S	DDX60L_uc003irr.1_Missense_Mutation_p.P414S|DDX60L_uc003irs.1_Missense_Mutation_p.P141S	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	414							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GTTCTCAGAGGAAAAGACTTT	0.373000													8	25					0	0	0.004482	0	0
ODZ3	55714	broad.mit.edu	37	4	183714413	183714413	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr4:183714413C>T	uc003ivd.1	+	25	6625	c.6588C>T	c.(6586-6588)TTC>TTT	p.F2196F		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2196	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AAGATGGTTTCCTACGTCAAA	0.488000													16	57					0	0	0.007413	0	0
CTNND2	1501	broad.mit.edu	37	5	10973694	10973694	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:10973694G>A	uc003jfa.1	-	22	3694	c.3549C>T	c.(3547-3549)AGC>AGT	p.S1183S	CTNND2_uc010itt.2_Silent_p.S1092S|CTNND2_uc011cmy.1_Silent_p.S846S|CTNND2_uc011cmz.1_Silent_p.S750S|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.S775S	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1183					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TGGTGTACTCGCTGGCGGGAG	0.522000													23	105					0	0	0.008361	0	0
DNAH5	1767	broad.mit.edu	37	5	13754425	13754425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:13754425C>T	uc003jfd.2	-	62	10484	c.10442G>A	c.(10441-10443)CGA>CAA	p.R3481Q	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3481	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTGTCTGCATCGCTCTGCATC	0.418000									Kartagener_syndrome				10	65					0	0	0.010729	0	0
TRIO	7204	broad.mit.edu	37	5	14488216	14488216	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:14488216C>T	uc003jff.2	+	48	7485	c.7479C>T	c.(7477-7479)CCC>CCT	p.P2493P	TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Silent_p.P2142P	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2493					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					CCGCCTCCCCCGCCAGCCGAC	0.716000													6	33					0	0	0.008291	0	0
TRIO	7204	broad.mit.edu	37	5	14488280	14488280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:14488280C>T	uc003jff.2	+	48	7549	c.7543C>T	c.(7543-7545)CGC>TGC	p.R2515C	TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Missense_Mutation_p.R2164C	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2515					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GCAGACACCCCGCCACGCGGC	0.711000													7	31					0	0	0.003080	0	0
CDH18	1016	broad.mit.edu	37	5	19483608	19483608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:19483608C>T	uc003jgc.2	-	11	2061	c.1684G>A	c.(1684-1686)GAT>AAT	p.D562N	CDH18_uc003jgd.2_Missense_Mutation_p.D562N|CDH18_uc011cnm.1_Intron	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	562	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TAATACACATCCTGAACAGTT	0.468000													7	60					0	0	0.006214	0	0
PDZD2	23037	broad.mit.edu	37	5	31995761	31995761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:31995761G>A	uc003jhl.2	+	4	1446	c.1058G>A	c.(1057-1059)GGA>GAA	p.G353E	PDZD2_uc003jhm.2_Missense_Mutation_p.G353E|PDZD2_uc011cnx.1_Missense_Mutation_p.G179E	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	353	PDZ 2.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGAGGCCGAGGATCAAAGCGC	0.448000													14	60					0	0	0.003163	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33881430	33881430	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:33881430T>C	uc003jia.1	-	2	446	c.283A>G	c.(283-285)ATT>GTT	p.I95V	ADAMTS12_uc010iuq.1_Missense_Mutation_p.I95V|ADAMTS12_uc003jib.1_Missense_Mutation_p.I95V	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	95					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TCGTGAGAAATTCTGTAGTAC	0.458000										HNSCC(64;0.19)			30	108					0	0	0.008740	0	0
ZNF366	167465	broad.mit.edu	37	5	71757314	71757314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:71757314C>T	uc003kce.1	-	2	196	c.10G>A	c.(10-12)GAA>AAA	p.E4K		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		ATCTTCATTTCCTTCTGCATC	0.423000													8	70					0	0	0.006214	0	0
VCAN	1462	broad.mit.edu	37	5	82815203	82815203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:82815203G>A	uc003kii.3	+	7	1434	c.1078G>A	c.(1078-1080)GCA>ACA	p.A360T	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.A360T|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	360	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GAGTATCCTCGCAGAAACTGC	0.368000													7	100					0	0	0.006214	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181765	140181765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:140181765C>T	uc003lhf.2	+	1	983	c.983C>T	c.(982-984)CCC>CTC	p.P328L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.P328L	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	328	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAGGAAATCCCCCAATGTCA	0.373000													4	88					0	0	0.000602	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480755	140480755	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:140480755G>A	uc003lio.2	+	1	522	c.522G>A	c.(520-522)CCG>CCA	p.P174P	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	174	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTATCACTCCGAATTCCCACT	0.507000													10	104					0	0	0.010729	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516182	140516182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:140516182C>T	uc003liq.2	+	1	1383	c.1166C>T	c.(1165-1167)CCC>CTC	p.P389L		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	389	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AATGATCTCCCCTTTCTTTTG	0.473000													3	45					0	0	0.009096	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530763	140530763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:140530763G>A	uc003lir.2	+	1	925	c.925G>A	c.(925-927)GAA>AAA	p.E309K	PCDHB6_uc011dah.1_Missense_Mutation_p.E173K	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	309	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGATTTTGAGGAAATTCAGTC	0.463000													5	63					0	0	0.000602	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563208	140563208	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:140563208G>A	uc003liv.2	+	1	2229	c.1074G>A	c.(1072-1074)GAG>GAA	p.E358E	PCDHB16_uc010jfw.1_Silent_p.E30E	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	358	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCATCCCAGAGAACTCGCCTG	0.522000													8	91					0	0	0.006214	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140794689	140794689	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:140794689C>T	uc003lkl.1	+	1	1947	c.1947C>T	c.(1945-1947)GCC>GCT	p.A649A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Silent_p.A649A|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	649	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGTAGTGGCCGTCCAGGACC	0.711000													12	119					0	0	0.002450	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140866630	140866630	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:140866630G>A	uc003lky.1	+	1	1890	c.1890G>A	c.(1888-1890)ACG>ACA	p.T630T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Silent_p.T630T|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	630	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGCGGACGGCTGTTCCTA	0.527000													3	22					0	0	0.009096	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178551987	178551987	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:178551987C>T	uc003mjw.2	-	19	2945	c.2945G>A	c.(2944-2946)GGG>GAG	p.G982E		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	982	TSP type-1 4.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GGACCAGGGCCCGGCTCGCCA	0.692000													8	68					0	0	0.008291	0	0
BTNL3	10917	broad.mit.edu	37	5	180419923	180419923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr5:180419923C>T	uc003mmr.2	+	2	288	c.160C>T	c.(160-162)CGG>TGG	p.R54W		NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	54	Extracellular (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			TATGGAAGTGCGGTTCTTCAG	0.552000													4	80					0	0	0.001168	0	0
FAM65B	9750	broad.mit.edu	37	6	24843463	24843463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:24843463G>A	uc003neo.1	-	14	1723	c.1547C>T	c.(1546-1548)TCT>TTT	p.S516F	FAM65B_uc011djs.1_Missense_Mutation_p.S495F|FAM65B_uc011dju.1_Missense_Mutation_p.S500F|FAM65B_uc003nep.2_Missense_Mutation_p.S466F|FAM65B_uc011djt.1_Missense_Mutation_p.S466F	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	516					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						GCAAGCCTCAGATGGGGCCGA	0.577000													7	37					0	0	0.004482	0	0
PRSS16	10279	broad.mit.edu	37	6	27222490	27222490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:27222490C>T	uc003nja.2	+	10	1181	c.1169C>T	c.(1168-1170)CCC>CTC	p.P390L	PRSS16_uc011dkt.1_RNA|PRSS16_uc003njb.2_Missense_Mutation_p.P133L|PRSS16_uc003njd.2_Intron	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	390					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity			ovary(2)|central_nervous_system(2)|skin(1)	5						TGTGAGAATCCCAGATGTCCT	0.517000													20	182					0	0	0.003954	0	0
OR2B3	442184	broad.mit.edu	37	6	29054720	29054720	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:29054720G>A	uc003nlx.2	-	1	371	c.306C>T	c.(304-306)ATC>ATT	p.I102I		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						CCAGGAAGATGATGAGGTGGG	0.468000													15	91					0	0	0.007413	0	0
MUC21	394263	broad.mit.edu	37	6	30954947	30954947	+	Missense_Mutation	SNP	A	C	C	rs144550410		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:30954947A>C	uc003nsh.2	+	2	1246	c.995A>C	c.(994-996)AAC>ACC	p.N332T	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	332	Ser-rich.|28 X 15 AA approximate tandem repeats.|21.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						ACAGCCACCAACTCTGAGTCC	0.622000													8	484					0	0	0.001855	0	0
EHMT2	10919	broad.mit.edu	37	6	31855918	31855918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:31855918G>A	uc003nxz.1	-	13	1655	c.1645C>T	c.(1645-1647)CCC>TCC	p.P549S	EHMT2_uc003nxx.1_5'Flank|EHMT2_uc003nxy.1_Missense_Mutation_p.P340S|EHMT2_uc011don.1_Missense_Mutation_p.P572S|EHMT2_uc003nya.1_Missense_Mutation_p.P515S	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	549					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						TCACCCCGGGGGATGGTCACC	0.652000													6	48					0	0	0.001168	0	0
TCTE1	202500	broad.mit.edu	37	6	44253763	44253763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:44253763G>A	uc003oxi.2	-	3	940	c.784C>T	c.(784-786)CTC>TTC	p.L262F	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	262										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TAGGTGAAGAGGAAGAGATTC	0.592000													11	126					0	0	0.010729	0	0
FAM83B	222584	broad.mit.edu	37	6	54735191	54735191	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:54735191G>A	uc003pck.2	+	2	263	c.147G>A	c.(145-147)CAG>CAA	p.Q49Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	49										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTCTTGTCCAGGAACGAGTTT	0.388000													4	43					0	0	0.009096	0	0
COL19A1	1310	broad.mit.edu	37	6	70637889	70637889	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:70637889C>T	uc003pfc.1	+	5	472	c.355C>T	c.(355-357)CTG>TTG	p.L119L	COL19A1_uc010kam.1_Silent_p.L15L	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	119	TSP N-terminal.			FRVRRNAKKERWFL -> ETTVPFWRFFVLET (in Ref. 6; AAA36358).	cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						ACGGTGGTTTCTGTGGCAGGT	0.423000													3	26					0	0	0.000602	0	0
COL12A1	1303	broad.mit.edu	37	6	75865438	75865438	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:75865438C>G	uc003phs.2	-	16	3549	c.3383G>C	c.(3382-3384)AGA>ACA	p.R1128T	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1128	Fibronectin type-III 8.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CCCCAGTCTTCTGTCATCCCC	0.468000													3	64					0	0	0.000602	0	0
SPACA1	81833	broad.mit.edu	37	6	88768507	88768507	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:88768507C>T	uc003pmn.2	+	4	558	c.441C>T	c.(439-441)TTC>TTT	p.F147F		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	147	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		TAAATCGTTTCAAATATATGT	0.333000													5	23					0	0	0.001168	0	0
SGK1	6446	broad.mit.edu	37	6	134492024	134492024	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:134492024G>A	uc003qen.3	-	11	1157	c.1068C>T	c.(1066-1068)TCC>TCT	p.S356S	SGK1_uc003qeo.3_Silent_p.S451S|SGK1_uc011ect.1_Silent_p.S346S|SGK1_uc011ecu.1_Silent_p.S312S|SGK1_uc011ecv.1_Silent_p.S370S|SGK1_uc011ecw.1_Silent_p.S384S	NM_005627	NP_005618	O00141	SGK1_HUMAN	serum/glucocorticoid regulated kinase 1 isoform	356	AGC-kinase C-terminal.				apoptosis|response to stress|sodium ion transport	endoplasmic reticulum|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			skin(3)|stomach(1)|lung(1)|central_nervous_system(1)	6	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00317)|GBM - Glioblastoma multiforme(68;0.00847)		AGTTAATTAAGGAGAAGAAGA	0.393000													5	58					0	0	0.001168	0	0
WTAP	9589	broad.mit.edu	37	6	160176365	160176365	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr6:160176365T>C	uc003qsl.2	+	8	1135	c.913T>C	c.(913-915)TCT>CCT	p.S305P	WTAP_uc003qso.2_Missense_Mutation_p.S186P	NM_004906	NP_004897	Q15007	FL2D_HUMAN	Wilms' tumour 1-associating protein isoform 1	305					cell cycle|mRNA processing|RNA splicing	nuclear membrane|nucleolus					0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.75e-18)|BRCA - Breast invasive adenocarcinoma(81;5.93e-06)		TGACTTTCCTTCTTCTCCAGG	0.512000													8	57					0	0	0.006214	0	0
CLK2P	1197	broad.mit.edu	37	7	23624933	23624933	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:23624933C>T	uc003swk.2	-	1	1214	c.564G>A	c.(562-564)CGG>CGA	p.R188R		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						CCAGGCGACCCCGGTAAAAAT	0.512000													9	102					0	0	0.010729	0	0
ELMO1	9844	broad.mit.edu	37	7	37272719	37272719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:37272719G>A	uc003tfk.1	-	8	837	c.530C>T	c.(529-531)TCG>TTG	p.S177L	ELMO1_uc011kbc.1_Missense_Mutation_p.S81L|ELMO1_uc010kxg.1_Missense_Mutation_p.S177L	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	177					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GAACGCCACCGAAAATGTATC	0.463000													3	52					0	0	0.009096	0	0
SFRP4	6424	broad.mit.edu	37	7	37951872	37951873	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:37951872_37951873CC>TT	uc003tfo.3	-	4	1025_1026	c.639_640GG>AA	c.(637-642)GAGGTC>GAAATC	p.V214I		NM_003014	NP_003005	Q6FHJ7	SFRP4_HUMAN	secreted frizzled-related  protein 4 precursor	214	NTR.				brain development|cell differentiation|decidualization|embryo development|epithelium development|gonad development|mammary gland involution|menstrual cycle phase|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell proliferation|negative regulation of JNK cascade|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of sodium-dependent phosphate transport|phosphate ion homeostasis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epidermal cell differentiation|positive regulation of gene expression|positive regulation of receptor internalization|vasculature development|Wnt receptor signaling pathway	cell surface|cytoplasm|extracellular space|nucleus	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1						ACCGTTGTGACCTCATTGCAGC	0.421000													5	44					0	0	0.004672	0	0
TNS3	64759	broad.mit.edu	37	7	47343143	47343143	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:47343143G>A	uc003tnv.2	-	22	3229	c.2862C>T	c.(2860-2862)CCC>CCT	p.P954P	TNS3_uc003tnw.2_Silent_p.P954P	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	954						focal adhesion	protein binding			ovary(4)	4						CCATGGGCTTGGGGCTGCTCT	0.597000													5	7					0	0	0.000602	0	0
POM121L12	285877	broad.mit.edu	37	7	53103724	53103724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:53103724G>A	uc003tpz.2	+	1	376	c.360G>A	c.(358-360)ATG>ATA	p.M120I		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	120											0						AGGGTTGCATGAAAGGGGGGC	0.706000													8	58					0	0	0.010729	0	0
TRIM50	135892	broad.mit.edu	37	7	72730583	72730583	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:72730583G>A	uc010lbd.1	-	6	980	c.855C>T	c.(853-855)CTC>CTT	p.L285L	FKBP6_uc003twz.2_Intron|TRIM50_uc003txy.1_Silent_p.L285L|TRIM50_uc003txz.1_Silent_p.L284L	NM_178125	NP_835226	Q86XT4	TRI50_HUMAN	tripartite motif protein 50A	285	B30.2/SPRY.					cytoplasm|intracellular membrane-bounded organelle	ligase activity|zinc ion binding			skin(1)	1						CTTTCCGGAAGAGCCTTTTCC	0.592000													12	60					0	0	0.001855	0	0
NCF1	653361	broad.mit.edu	37	7	74197924	74197924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:74197924G>A	uc003ubb.2	+	7	701	c.631G>A	c.(631-633)GAG>AAG	p.E211K	NCF1_uc010lbs.1_3'UTR|NCF1_uc011kfh.1_3'UTR	NM_000265	NP_000256	P14598	NCF1_HUMAN	neutrophil cytosolic factor 1	211	Asp/Glu-rich (highly acidic).|SH3 1.				cell communication|cellular defense response|innate immune response|protein targeting to membrane|respiratory burst|superoxide anion generation	cytosol|NADPH oxidase complex|soluble fraction	electron carrier activity|GTP binding|GTPase activity|phosphatidylinositol binding|SH3 domain binding|superoxide-generating NADPH oxidase activity			skin(1)	1						GTCCTTCCTCGAGCCCCTGGA	0.637000													16	93					0	0	0.012319	0	0
DLX6	1750	broad.mit.edu	37	7	96635340	96635340	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:96635340C>T	uc003uom.2	+	1	51	c.51C>T	c.(49-51)TCC>TCT	p.S17S	DLX6AS_uc003uok.2_5'Flank|DLX6AS_uc003uol.2_Intron|DLX6AS_uc010lfo.1_Intron	NM_005222	NP_005213	P56179	DLX6_HUMAN	distal-less homeobox 6	Error:Variant_position_missing_in_P56179_after_alignment					nervous system development|skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					AGGACTCGTCCAAATCCGCCT	0.343000													3	28					0	0	0.009096	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99128995	99128995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:99128995C>T	uc003uqv.2	+	7	1767	c.1643C>T	c.(1642-1644)CCA>CTA	p.P548L	ZKSCAN5_uc010lfx.2_Missense_Mutation_p.P548L|ZKSCAN5_uc003uqw.2_Missense_Mutation_p.P548L|ZKSCAN5_uc003uqx.2_Missense_Mutation_p.P475L|ZKSCAN5_uc003uqy.2_Missense_Mutation_p.P284L	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	548					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					GGAGAGAGACCACATAAATGT	0.418000													7	61					0	0	0.004482	0	0
MOSPD3	64598	broad.mit.edu	37	7	100212779	100212779	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:100212779C>T	uc003uvq.2	+	6	883	c.681C>T	c.(679-681)CTC>CTT	p.L227L	MOSPD3_uc003uvr.2_Silent_p.L227L|MOSPD3_uc003uvs.2_Silent_p.L227L|MOSPD3_uc003uvt.2_Silent_p.L217L	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	227	Helical; (Potential).					integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CTCCAGGCCTCCTCACCATGG	0.632000													15	106					0	0	0.004007	0	0
SRRT	51593	broad.mit.edu	37	7	100482173	100482173	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:100482173G>A	uc003uwy.2	+	8	1210	c.942G>A	c.(940-942)CAG>CAA	p.Q314Q	SRRT_uc010lhl.1_Silent_p.Q314Q|SRRT_uc003uxa.2_Silent_p.Q314Q|SRRT_uc003uwz.2_Silent_p.Q314Q	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	314	Glu-rich.				cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						ACGGCAAGCAGGTCCGAGCCC	0.617000													4	38					0	0	0.001168	0	0
CUX1	1523	broad.mit.edu	37	7	101845351	101845351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:101845351C>T	uc003uyx.3	+	18	2812	c.2774C>T	c.(2773-2775)CCC>CTC	p.P925L	CUX1_uc003uys.3_Missense_Mutation_p.P936L|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	925					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						CCCACCAAGCCCTCGGTCCCC	0.642000													33	195					0	0	0.008740	0	0
IMPDH1	3614	broad.mit.edu	37	7	128041115	128041115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:128041115G>A	uc011kol.1	-	3	309	c.203C>T	c.(202-204)TCC>TTC	p.S68F	IMPDH1_uc011kom.1_Missense_Mutation_p.S68F|IMPDH1_uc003vmt.2_Missense_Mutation_p.S68F|IMPDH1_uc003vmu.2_Missense_Mutation_p.S153F|IMPDH1_uc003vmw.2_Missense_Mutation_p.S143F|IMPDH1_uc011kon.1_Missense_Mutation_p.S120F|IMPDH1_uc003vmv.2_Missense_Mutation_p.S117F|IMPDH1_uc003vmx.2_Missense_Mutation_p.S76F|IMPDH1_uc003vmy.2_Missense_Mutation_p.S84F	NM_001142573	NP_001136045	P20839	IMDH1_HUMAN	inosine monophosphate dehydrogenase 1 isoform e	68		IMP.			GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	DNA binding|IMP dehydrogenase activity|metal ion binding			skin(2)|lung(1)|central_nervous_system(1)	4					Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)|Ribavirin(DB00811)|Thioguanine(DB00352)	GTCCATGGGGGAGGAGATCAG	0.547000													15	90					0	0	0.012319	0	0
PLXNA4	91584	broad.mit.edu	37	7	132193153	132193153	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:132193153G>A	uc003vra.3	-	2	529	c.300C>T	c.(298-300)ATC>ATT	p.I100I	PLXNA4_uc003vrc.2_Silent_p.I100I|PLXNA4_uc003vrb.2_Silent_p.I100I	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	100	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AGGTCTGGACGATGCGGGGTG	0.557000													17	73					0	0	0.002780	0	0
CALD1	800	broad.mit.edu	37	7	134618619	134618619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:134618619G>A	uc003vrz.2	+	5	1558	c.1099G>A	c.(1099-1101)GCA>ACA	p.A367T	CALD1_uc003vry.2_Intron|CALD1_uc003vsa.2_Intron|CALD1_uc003vsb.2_Intron|CALD1_uc010lmm.2_Intron|CALD1_uc011kpt.1_Intron|CALD1_uc003vsc.2_Intron|CALD1_uc003vsd.2_Intron|CALD1_uc011kpu.1_Intron|CALD1_uc011kpv.1_Intron|CALD1_uc003vse.2_Missense_Mutation_p.A231T	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	367	3 X 14 AA tandem repeats of E-E-E-K-R-A- A-E-E-R-Q-R-I-K.				cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						gaaaagggcagcagaggagag	0.214000													3	20					0	0	0.009096	0	0
BRAF	673	broad.mit.edu	37	7	140453134	140453134	+	Missense_Mutation	SNP	T	C	C	rs121913377		TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:140453134T>C	uc003vwc.3	-	15	1862	c.1801A>G	c.(1801-1803)AAA>GAA	p.K601E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	601	Protein kinase.		K -> Q (in CFC syndrome).|K -> E (in colorectal cancer).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.K601E(47)|p.V600_K601>E(8)|p.K601N(7)|p.K601del(4)|p.K601Q(3)|p.T599_R603>I(2)|p.V600_W604del(1)|p.K601K(1)|p.K601L(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.K601I(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	CATCGAGATTTCACTGTAGCT	0.368000		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				8	40					0	0	0.006214	0	0
OR2A2	442361	broad.mit.edu	37	7	143807033	143807033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:143807033G>A	uc011ktz.1	+	1	358	c.358G>A	c.(358-360)GAT>AAT	p.D120N		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					GATGTCCTATGATAGGTATGT	0.468000													6	51					0	0	0.003080	0	0
SSPO	23145	broad.mit.edu	37	7	149492394	149492394	+	Silent	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:149492394C>T	uc010lpk.2	+	43	6283	c.6283C>T	c.(6283-6285)CTG>TTG	p.L2095L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2095	F5/8 type C.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGCTGCCCTCCTGGGGGCTCC	0.677000													7	70					0	0	0.003080	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174541	150174541	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:150174541G>A	uc003whj.2	+	5	2001	c.1671G>A	c.(1669-1671)ACG>ACA	p.T557T		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	557						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CAGACTTTACGAAATACGCGA	0.493000													26	92					0	0	0.005524	0	0
ACCN3	9311	broad.mit.edu	37	7	150746324	150746324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr7:150746324G>A	uc003win.2	+	1	720	c.352G>A	c.(352-354)GAT>AAT	p.D118N	ACCN3_uc003wio.2_Missense_Mutation_p.D118N|ACCN3_uc003wip.2_Missense_Mutation_p.D118N|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	118	Extracellular (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCTGGGCCTGGATCCCGCAGA	0.687000													19	76					0	0	0.010504	0	0
EGR3	1960	broad.mit.edu	37	8	22548017	22548017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr8:22548017G>A	uc003xcm.1	-	2	1491	c.1133C>T	c.(1132-1134)TCG>TTG	p.S378L	EGR3_uc011kzn.1_Missense_Mutation_p.S340L|EGR3_uc011kzo.1_Missense_Mutation_p.S324L	NM_004430	NP_004421	Q06889	EGR3_HUMAN	early growth response 3	378					circadian rhythm|muscle organ development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)		Colorectal(74;0.0145)|BRCA - Breast invasive adenocarcinoma(99;0.053)|COAD - Colon adenocarcinoma(73;0.0608)		GGGGGCCAGCGACACGGGGGG	0.672000													4	47					0	0	0.009096	0	0
CHMP7	91782	broad.mit.edu	37	8	23112815	23112815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr8:23112815C>T	uc003xdc.2	+	4	1175	c.527C>T	c.(526-528)CCC>CTC	p.P176L	CHMP7_uc011kzs.1_RNA|CHMP7_uc003xdd.2_Missense_Mutation_p.P66L|CHMP7_uc003xde.2_Missense_Mutation_p.P34L	NM_152272	NP_689485	Q8WUX9	CHMP7_HUMAN	CHMP family, member 7	176					cellular membrane organization|late endosome to vacuole transport	cytosol|ESCRT III complex	protein transporter activity				0		Prostate(55;0.0513)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		TCCTCCCACCCCGTGGTGGCC	0.582000													10	74					0	0	0.013537	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24261570	24261570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr8:24261570G>A	uc003xdz.2	+	13	1595	c.1375G>A	c.(1375-1377)GAT>AAT	p.D459N	ADAMDEC1_uc010lub.2_Missense_Mutation_p.D380N|ADAMDEC1_uc011lab.1_Missense_Mutation_p.D380N	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	459	Disintegrin.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GCCTGGAACTGATTGCGGAGG	0.408000													7	26					0	0	0.006214	0	0
EXTL3	2137	broad.mit.edu	37	8	28574447	28574447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr8:28574447G>A	uc003xgz.1	+	3	1464	c.871G>A	c.(871-873)GTC>ATC	p.V291I		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	291	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TCTCTATAACGTCAGTACTGG	0.522000													4	50					0	0	0.000602	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70585410	70585410	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr8:70585410G>A	uc003xyl.2	-	10	2948	c.2241C>T	c.(2239-2241)TTC>TTT	p.F747F	SLCO5A1_uc010lzb.2_Silent_p.F692F|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	747	Helical; Name=12; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			TAAACCCAACGAATTTGAGGC	0.488000													10	78					0	0	0.010729	0	0
CNBD1	168975	broad.mit.edu	37	8	88365890	88365890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr8:88365890G>A	uc003ydy.2	+	10	1227	c.1179G>A	c.(1177-1179)ATG>ATA	p.M393I		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	393	cNMP.									ovary(3)	3						TTGTTTATATGGGGAAACTTA	0.323000													3	11					0	0	0.001168	0	0
FAM135B	51059	broad.mit.edu	37	8	139158223	139158223	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr8:139158223G>A	uc003yuy.2	-	15	3690	c.3519C>T	c.(3517-3519)TTC>TTT	p.F1173F	FAM135B_uc003yux.2_Silent_p.F1074F|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.F735F|FAM135B_uc003yvb.2_Missense_Mutation_p.P701S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1173										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CAGACATTAGGAAGTCCAGTT	0.438000										HNSCC(54;0.14)			7	44					0	0	0.008291	0	0
ACER2	340485	broad.mit.edu	37	9	19450564	19450565	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:19450564_19450565GG>AA	uc003zny.1	+	6	916_917	c.758_759GG>AA	c.(757-759)TGG>TAA	p.W253*	ACER2_uc003znx.1_RNA|ACER2_uc003znz.1_Nonsense_Mutation_p.W204*	NM_001010887	NP_001010887	Q5QJU3	ACER2_HUMAN	alkaline ceramidase 2	253	Cytoplasmic (Potential).				ceramide metabolic process|negative regulation of cell adhesion mediated by integrin|negative regulation of cell-matrix adhesion|negative regulation of protein glycosylation in Golgi|positive regulation of cell proliferation|response to retinoic acid|sphingosine biosynthetic process	integral to Golgi membrane	ceramidase activity			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2						AATGAGAAATGGGCCTTCATTG	0.510000													10	76					0	0	0.004672	0	0
LINGO2	158038	broad.mit.edu	37	9	27948907	27948907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:27948907C>T	uc003zqu.1	-	2	1957	c.1763G>A	c.(1762-1764)GGT>GAT	p.G588D	LINGO2_uc010mjf.1_Missense_Mutation_p.G588D|LINGO2_uc003zqv.1_Missense_Mutation_p.G588D	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	588	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		CACAACAGCACCATTGTTTTT	0.453000													6	29					0	0	0.001984	0	0
TMEM2	23670	broad.mit.edu	37	9	74309493	74309493	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:74309493A>C	uc011lsa.1	-	21	4168	c.3628T>G	c.(3628-3630)TAC>GAC	p.Y1210D	TMEM2_uc011lrz.1_Missense_Mutation_p.Y203D|TMEM2_uc010mos.2_Missense_Mutation_p.Y1147D|TMEM2_uc011lsb.1_RNA|TMEM2_uc004aik.2_Missense_Mutation_p.Y44D	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	1210						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		ACAGGGAGGTAACTTTTATGA	0.398000													12	43					0	0	0.003163	0	0
SEMA4D	10507	broad.mit.edu	37	9	92002452	92002452	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:92002452G>A	uc004aqo.1	-	14	1751	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F	SEMA4D_uc011ltm.1_Silent_p.F393F|SEMA4D_uc011ltn.1_RNA|SEMA4D_uc011lto.1_RNA|SEMA4D_uc004aqp.1_Silent_p.F391F	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	393	Sema.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						GGTCTTTAACGAACTGCAGCG	0.527000													11	75					0	0	0.001855	0	0
SVEP1	79987	broad.mit.edu	37	9	113163201	113163201	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:113163201A>C	uc010mtz.2	-	40	10092	c.9755T>G	c.(9754-9756)GTG>GGG	p.V3252G	SVEP1_uc010mty.2_Missense_Mutation_p.V1178G	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3252	Sushi 31.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ACTGCCAACCACAAATCCATG	0.403000													3	24					0	0	0.004672	0	0
OR2K2	26248	broad.mit.edu	37	9	114090456	114090456	+	Silent	SNP	C	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:114090456C>G	uc011lwp.1	-	1	258	c.258G>C	c.(256-258)CTG>CTC	p.L86L		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	115	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCTGGGATGACAGCAAGTTCA	0.468000													3	28					0	0	0.000602	0	0
AKNA	80709	broad.mit.edu	37	9	117138988	117138988	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:117138988G>C	uc004biq.3	-	2	1234	c.1099C>G	c.(1099-1101)CGG>GGG	p.R367G	AKNA_uc004bio.3_5'UTR|AKNA_uc004bip.3_Missense_Mutation_p.R286G|AKNA_uc004bir.3_Missense_Mutation_p.R367G|AKNA_uc004bis.3_Missense_Mutation_p.R367G|AKNA_uc010mve.2_Missense_Mutation_p.R248G|AKNA_uc004biu.1_Missense_Mutation_p.R108G|AKNA_uc004biv.1_Missense_Mutation_p.R367G|AKNA_uc004biw.1_Missense_Mutation_p.R367G	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	367					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						AATCTCACCCGGGGCCCTACC	0.607000													4	36					0	0	0.009096	0	0
NR6A1	2649	broad.mit.edu	37	9	127316631	127316631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:127316631G>A	uc004bor.1	-	3	539	c.361C>T	c.(361-363)CTC>TTC	p.L121F	NR6A1_uc004boq.1_Missense_Mutation_p.L117F|NR6A1_uc010mwq.1_Missense_Mutation_p.L117F	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	121	Nuclear receptor.				cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						CCCATCTGGAGGCATTTGAGC	0.493000													27	131					0	0	0.003755	0	0
SLC34A3	142680	broad.mit.edu	37	9	140126553	140126553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr9:140126553G>A	uc004cmf.1	+	3	301	c.115G>A	c.(115-117)GAA>AAA	p.E39K	SLC34A3_uc004cmc.1_5'UTR|SLC34A3_uc004cmd.1_Missense_Mutation_p.E39K|SLC34A3_uc011met.1_Missense_Mutation_p.E39K	NM_080877	NP_543153	Q8N130	NPT2C_HUMAN	solute carrier family 34 (sodium phosphate),	39	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|integral to membrane	sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		AGTCTTGGAGGAAGGGGACAC	0.627000													26	240					0	0	0.013726	0	0
PPP2R3B	28227	broad.mit.edu	37	X	322179	322179	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:322179G>A	uc004cpg.2	-	2	672	c.471C>T	c.(469-471)CAC>CAT	p.H157H	PPP2R3B_uc011mha.1_Translation_Start_Site	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	157					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGGCCCTCTCGTGGGGGAACC	0.637000													7	74					0	0	0.006214	0	0
ASMTL	8623	broad.mit.edu	37	X	1522331	1522331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:1522331G>A	uc004cpx.1	-	13	1808	c.1697C>T	c.(1696-1698)GCG>GTG	p.A566V	NCRNA00105_uc004cpv.2_Intron|NCRNA00105_uc004cpw.2_Intron|ASMTL_uc011mhe.1_Missense_Mutation_p.A490V|ASMTL_uc004cpy.1_Missense_Mutation_p.A550V|ASMTL_uc011mhf.1_Missense_Mutation_p.A508V	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	566	ASMT-like.				melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GGCGCGCTGCGCCACCCTCTT	0.652000													16	117					0	0	0.014323	0	0
FAM47C	442444	broad.mit.edu	37	X	37027156	37027156	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:37027156C>G	uc004ddl.1	+	1	687	c.673C>G	c.(673-675)CAG>GAG	p.Q225E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	225										ovary(3)	3						TCTCCGCCCACAGCCTCCCAA	0.647000													4	46					0	0	0.009096	0	0
ZC4H2	55906	broad.mit.edu	37	X	64138925	64138925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:64138925C>T	uc004dvu.2	-	4	646	c.558G>A	c.(556-558)ATG>ATA	p.M186I	ZC4H2_uc004dvv.2_Missense_Mutation_p.M163I|ZC4H2_uc011mov.1_Missense_Mutation_p.M163I|ZC4H2_uc011mow.1_Intron|ZC4H2_uc004dvw.1_3'UTR	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	186							metal ion binding|protein binding			ovary(1)	1						CACTTACCTTCATAGGTGGGG	0.577000													13	34					0	0	0.004990	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450805	105450805	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:105450805G>A	uc004emf.1	+	4	2029	c.1380G>A	c.(1378-1380)GAG>GAA	p.E460E	MUM1L1_uc004emg.1_Silent_p.E460E	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	460										ovary(2)|pancreas(1)|skin(1)	4						AAGCCAGGGAGGATTATAGTG	0.358000													6	30					0	0	0.004482	0	0
COL4A5	1287	broad.mit.edu	37	X	107925060	107925061	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:107925060_107925061CC>TT	uc004enz.1	+	46	4360_4361	c.4158_4159CC>TT	c.(4156-4161)ATCCCT>ATTTCT	p.P1387S	COL4A5_uc011mso.1_Missense_Mutation_p.P1384S|COL4A5_uc011msp.1_Missense_Mutation_p.P63S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1381	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CTCCAGGAATCCCTGGCCAGCC	0.441000									Alport_syndrome_with_Diffuse_Leiomyomatosis				4	10					0	0	0.004672	0	0
CT47B1	643311	broad.mit.edu	37	X	120009253	120009253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:120009253G>A	uc011muc.1	-	1	527	c.272C>T	c.(271-273)ACG>ATG	p.T91M		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	91											0						ctcttcctccGTCGCGGGCCC	0.597000													4	12					0	0	0.000602	0	0
FRMD7	90167	broad.mit.edu	37	X	131231325	131231325	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:131231325C>G	uc004ewn.2	-	4	431	c.253G>C	c.(253-255)GAC>CAC	p.D85H	FRMD7_uc011muy.1_Missense_Mutation_p.D70H	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	85	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TGTCCAGGGTCCACTGGGAAA	0.358000													39	98					0	0	0.014410	0	0
PLXNB3	5365	broad.mit.edu	37	X	153036993	153036993	+	Silent	SNP	G	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chrX:153036993G>A	uc004fii.2	+	14	2574	c.2400G>A	c.(2398-2400)GCG>GCA	p.A800A	PLXNB3_uc011mzb.1_Intron|PLXNB3_uc011mzc.1_Silent_p.A482A|PLXNB3_uc010nuk.2_Silent_p.A823A|PLXNB3_uc011mzd.1_Silent_p.A439A|PLXNB3_uc004fij.1_5'Flank	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	800	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					ACTGCCAAGCGGCCAACAGGA	0.682000													8	31					0	0	0.008291	0	0
DDX5	1655	broad.mit.edu	37	17	62496834	62496835	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr17:62496834_62496835insA	uc002jek.2	-	12	1520_1521	c.1273_1274insT	c.(1273-1275)TATfs	p.Y425fs	DDX5_uc010deh.2_Frame_Shift_Ins_p.Y425fs|DDX5_uc002jej.2_Frame_Shift_Ins_p.Y320fs|DDX5_uc010wqa.1_Frame_Shift_Ins_p.Y346fs	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	425	Helicase C-terminal.				cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			TCGATGAATATAATCCTCTGAG	0.396			T	ETV4	prostate								17	127	---	---	---	---					
GAL3ST2	64090	broad.mit.edu	37	2	242738494	242738496	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A3JH-06A-11D-A21A-08	TCGA-EE-A3JH-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d505e6e9-3d94-4e2f-8fa1-dd5d0b253ab7	84f4e083-573b-4c7e-9998-ad9aa5bc4df1	g.chr2:242738494_242738496delTCC	uc002wcj.1	+	2	175_177	c.44_46delTCC	c.(43-48)ATCCTC>ATC	p.L20del		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	20	Helical; Signal-anchor for type II membrane protein; (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TTCCGGGTCATCCTCCTCCTCCT	0.631													8	295	---	---	---	---					
