Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CLCNKB	1188	broad.mit.edu	37	1	16378296	16378296	+	Silent	SNP	A	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr1:16378296A>C	uc001axw.3	+	14	1469	c.1389A>C	c.(1387-1389)CCA>CCC	p.P463P	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Silent_p.P463P|CLCNKB_uc001axy.3_Silent_p.P294P	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	463	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CCATCATGCCAGGGGGGTATG	0.622000													4	87	---	---	---	---	0	0	1	0	0
GBP5	115362	broad.mit.edu	37	1	89732216	89732216	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr1:89732216G>C	uc001dnc.2	-	7	1218	c.681C>G	c.(679-681)TTC>TTG	p.F227L	GBP5_uc001dnd.2_Missense_Mutation_p.F227L|GBP5_uc001dne.1_Missense_Mutation_p.F227L	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	227						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		TTTTTGGAAAGAACTTCTGTA	0.368000													15	16	---	---	---	---	0	0	1	0	0
CHD4	1108	broad.mit.edu	37	12	6691343	6691343	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr12:6691343A>C	uc001qpo.2	-	30	4639	c.4475T>G	c.(4474-4476)GTC>GGC	p.V1492G	CHD4_uc001qpn.2_Missense_Mutation_p.V1485G|CHD4_uc001qpp.2_Missense_Mutation_p.V1517G|uc001qpq.1_Intron|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1492					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TCTAGTAAGGACATGCTGGCG	0.453000													4	53	---	---	---	---	0	0	1	0	0
ZNF410	57862	broad.mit.edu	37	14	74390223	74390223	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr14:74390223G>C	uc001xoz.1	+	11	1578	c.1396G>C	c.(1396-1398)GAG>CAG	p.E466Q	ZNF410_uc001xoy.1_RNA|ZNF410_uc010tuf.1_RNA|ZNF410_uc010tug.1_Missense_Mutation_p.E197Q|ZNF410_uc010tuh.1_Missense_Mutation_p.E393Q|ZNF410_uc010tui.1_RNA|ZNF410_uc010arz.1_Missense_Mutation_p.E483Q|ZNF410_uc001xpa.1_Missense_Mutation_p.E270Q|ZNF410_uc001xpb.1_Missense_Mutation_p.E419Q|ZNF410_uc001xpc.1_Missense_Mutation_p.E413Q|ZNF410_uc010tuj.1_Missense_Mutation_p.E270Q	NM_021188	NP_067011	Q86VK4	ZN410_HUMAN	zinc finger protein 410	466					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00369)		AAATCCACAAGAGGTAAAGTG	0.443000													40	54	---	---	---	---	0	0	1	0	0
HERC2P2	400322	broad.mit.edu	37	15	23300079	23300080	+	RNA	DNP	TT	GC	GC	rs417713	by1000genomes	TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr15:23300079_23300080TT>GC	uc001yvq.2	-	4		c.1425_1426AA>GC			HERC2P2_uc001yvo.3_RNA|HERC2P2_uc001yvp.3_RNA					Homo sapiens mRNA for KIAA0393 protein, partial cds.												0						GTGCTGCACGTTGACAGGCGTG	0.609000													3	39	---	---	---	---	0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48788300	48788300	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr15:48788300C>T	uc001zwx.1	-	20	2744	c.2416G>A	c.(2416-2418)GAA>AAA	p.E806K		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	806	EGF-like 12; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GGTTTACCTTCACATGTTTTT	0.358000													12	13	---	---	---	---	0	0	1	0	0
STRA6	64220	broad.mit.edu	37	15	74476216	74476216	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr15:74476216C>G	uc002axk.2	-	14	1463	c.1281G>C	c.(1279-1281)CAG>CAC	p.Q427H	STRA6_uc002axi.2_Missense_Mutation_p.Q236H|STRA6_uc010ulh.1_Missense_Mutation_p.Q465H|STRA6_uc002axj.2_Missense_Mutation_p.Q466H|STRA6_uc010bji.2_Missense_Mutation_p.Q427H|STRA6_uc002axl.2_Missense_Mutation_p.Q359H|STRA6_uc002axm.2_Missense_Mutation_p.Q427H|STRA6_uc002axn.2_Missense_Mutation_p.Q418H|STRA6_uc010uli.1_Missense_Mutation_p.Q464H|STRA6_uc010bjj.1_RNA	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	427	Extracellular (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						TAAAGGCTGTCTGGTAGGCAC	0.612000													84	107	---	---	---	---	0	0	1	0	0
ACSM5	54988	broad.mit.edu	37	16	20430680	20430680	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr16:20430680A>C	uc002dhe.2	+	4	693	c.546A>C	c.(544-546)GAA>GAC	p.E182D	ACSM5_uc002dhd.1_Missense_Mutation_p.E182D	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	182					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						TCAGTGCCGAATGCCCCTCCC	0.587000													25	37	---	---	---	---	0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57015114	57015114	+	Silent	SNP	C	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr16:57015114C>T	uc002eki.2	+	12	1248	c.1191C>T	c.(1189-1191)CTC>CTT	p.L397L	CETP_uc002ekj.2_Silent_p.L337L	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	397					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						AGAAAAAGCTCTTCTTAAGCC	0.547000													13	28	---	---	---	---	0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71218818	71218818	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr16:71218818G>A	uc002ezr.2	-	3	339	c.211C>T	c.(211-213)CGA>TGA	p.R71*	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Nonsense_Mutation_p.R71*|HYDIN_uc010vmc.1_Nonsense_Mutation_p.R88*|HYDIN_uc010vmd.1_Nonsense_Mutation_p.R98*|HYDIN_uc002ezw.3_Nonsense_Mutation_p.R88*	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	71										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ATCTGTGGTCGGCACATCAAA	0.463000													3	73	---	---	---	---	0	0	1	0	0
DHX33	56919	broad.mit.edu	37	17	5353712	5353712	+	Silent	SNP	G	A	A			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr17:5353712G>A	uc002gca.2	-	10	1541	c.1539C>T	c.(1537-1539)TCC>TCT	p.S513S	DHX33_uc002gbz.2_Silent_p.S284S|DHX33_uc002gcb.2_Silent_p.S340S|DHX33_uc010clf.2_Silent_p.S289S	NM_020162	NP_064547	Q9H6R0	DHX33_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 33	513						nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|pancreas(1)	2						GGAATTTGGGGGACATGAGGA	0.473000													3	94	---	---	---	---	0	0	1	0	0
CHD3	1107	broad.mit.edu	37	17	7800502	7800502	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr17:7800502G>C	uc002gje.2	+	11	1959	c.1809G>C	c.(1807-1809)AAG>AAC	p.K603N	CHD3_uc002gjd.2_Missense_Mutation_p.K662N|CHD3_uc002gjf.2_Missense_Mutation_p.K603N|CHD3_uc002gjg.1_Missense_Mutation_p.K431N	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	603					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				ATGATGGGAAGAGCGACAAGC	0.512000													36	53	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	39296554	39296554	+	RNA	SNP	A	G	G			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr17:39296554A>G	uc010cxk.1	-	1		c.150T>C								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		agcagctgggacggcagcAGG	0.557000													6	219	---	---	---	---	0	0	1	0	0
PSMC3IP	29893	broad.mit.edu	37	17	40725136	40725136	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr17:40725136T>G	uc002iai.2	-	7	629	c.586A>C	c.(586-588)AAG>CAG	p.K196Q	MLX_uc002iaf.2_3'UTR|MLX_uc002iag.2_3'UTR|MLX_uc002iah.2_3'UTR|PSMC3IP_uc002iaj.2_Missense_Mutation_p.K133Q|PSMC3IP_uc002iak.2_Missense_Mutation_p.K184Q|PSMC3IP_uc010wgn.1_Missense_Mutation_p.K117Q|PSMC3IP_uc010wgo.1_RNA|PSMC3IP_uc010wgp.1_RNA	NM_016556	NP_057640	Q9P2W1	HOP2_HUMAN	PSMC3 interacting protein isoform 2	196					DNA recombination|meiosis	nucleus	DNA binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(22;0.00426)|Breast(137;0.00116)|all_epithelial(22;0.0395)		BRCA - Breast invasive adenocarcinoma(366;0.13)		AAGAACTGCTTCTTGCTCTTG	0.488000													17	13	---	---	---	---	0	0	1	0	0
LOC651250	651250	broad.mit.edu	37	17	66126377	66126377	+	RNA	SNP	T	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr17:66126377T>C	uc002jgq.2	+	6		c.5500T>C			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						ACATGCACTGTTGCAATGCAG	0.353000													4	190	---	---	---	---	0	0	1	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45731482	45731482	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr19:45731482C>T	uc002pay.1	-	3	174	c.133G>A	c.(133-135)GAA>AAA	p.E45K		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	45										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		CAGTGCTCTTCGTCCTCCTGC	0.642000													5	229	---	---	---	---	0	0	1	0	0
ABCG5	64240	broad.mit.edu	37	2	44055183	44055183	+	Silent	SNP	C	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr2:44055183C>T	uc002rtn.2	-	5	713	c.573G>A	c.(571-573)GGG>GGA	p.G191G	ABCG5_uc002rtm.2_5'UTR|ABCG5_uc002rto.2_Silent_p.G110G|ABCG5_uc002rtp.2_5'UTR	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	191	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TGGAAATGCCCCCCAAGCTGT	0.592000													10	54	---	---	---	---	0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103324773	103324773	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr2:103324773A>G	uc002tca.2	+	12	2406	c.2264A>G	c.(2263-2265)AAG>AGG	p.K755R		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	755	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						AGCAGAGAAAAGGGCACCCAG	0.532000													3	107	---	---	---	---	0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165947659	165947659	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr2:165947659G>C	uc002ucx.2	-	28	5496	c.5004C>G	c.(5002-5004)ATC>ATG	p.I1668M	SCN3A_uc010zcy.1_Missense_Mutation_p.I151M|SCN3A_uc002ucy.2_Missense_Mutation_p.I1619M|SCN3A_uc002ucz.2_Missense_Mutation_p.I1619M	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1668	Helical; Name=S5 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AGATGGCATAGATAAACATGA	0.458000													31	39	---	---	---	---	0	0	1	0	0
NUP35	129401	broad.mit.edu	37	2	183998333	183998333	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr2:183998333A>G	uc002upf.2	+	4	482	c.379A>G	c.(379-381)ACA>GCA	p.T127A	NUP35_uc010zfs.1_Missense_Mutation_p.T109A|NUP35_uc010zft.1_Missense_Mutation_p.T9A|NUP35_uc002upg.2_RNA	NM_138285	NP_612142	Q8NFH5	NUP53_HUMAN	nucleoporin 35kDa	127					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	intermediate filament cytoskeleton|nuclear membrane|nuclear pore|plasma membrane					0						TGTTGGAGTTACATCTACTCC	0.224000													2	6	---	---	---	---	0	0	1	0	0
ANKMY1	51281	broad.mit.edu	37	2	241447070	241447070	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr2:241447070G>T	uc002vyz.1	-	12	2395	c.2166C>A	c.(2164-2166)AAC>AAA	p.N722K	ANKMY1_uc002vza.1_Missense_Mutation_p.N498K|ANKMY1_uc010fzd.1_Missense_Mutation_p.N811K|ANKMY1_uc002vzb.1_Missense_Mutation_p.N483K|ANKMY1_uc002vzc.1_Intron|ANKMY1_uc002vzd.1_Missense_Mutation_p.N545K	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	722	ANK 6.						zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		TCAGGGGCAGGTTGGGGTCAG	0.592000													20	20	---	---	---	---	5.45024e-15	5.5865e-15	1	1	0
Unknown	0	broad.mit.edu	37	22	17385240	17385240	+	IGR	SNP	G	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr22:17385240G>T								HSFYL1 (75015 upstream) : GAB4 (57589 downstream)																							TTTGCAGACTGGATGCAGCAT	0.473000													3	71	---	---	---	---	1.024e-07	1.024e-07	1	1	0
MPPED1	758	broad.mit.edu	37	22	43898562	43898562	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr22:43898562G>A	uc011apv.1	+	6	1010	c.787G>A	c.(787-789)GGC>AGC	p.G263S	MPPED1_uc011apw.1_Missense_Mutation_p.G157S|MPPED1_uc011apx.1_Missense_Mutation_p.G105S|MPPED1_uc011apy.1_Missense_Mutation_p.G263S|MPPED1_uc011apz.1_Missense_Mutation_p.G296S	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	263							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				GCAGCGGGTGGGCTGTGTGGA	0.632000													21	138	---	---	---	---	0	0	1	0	0
LMOD3	56203	broad.mit.edu	37	3	69171306	69171306	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr3:69171306C>T	uc003dns.2	-	1	441	c.232G>A	c.(232-234)GAA>AAA	p.E78K	LMOD3_uc003dnt.2_Missense_Mutation_p.E78K	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	78						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		GATGCCTTTTCCCAATACATA	0.463000													3	2	---	---	---	---	0	0	1	0	0
MUC7	4589	broad.mit.edu	37	4	71346615	71346615	+	Silent	SNP	C	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr4:71346615C>T	uc011cat.1	+	4	442	c.154C>T	c.(154-156)CTA>TTA	p.L52L	MUC7_uc011cau.1_Silent_p.L52L|MUC7_uc003hfj.2_Silent_p.L52L|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	52						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			TCCTGGACTGCTAGCTCACCA	0.453000													4	98	---	---	---	---	0	0	1	0	0
GPR151	134391	broad.mit.edu	37	5	145895223	145895223	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr5:145895223A>C	uc003lod.1	-	1	454	c.454T>G	c.(454-456)TAC>GAC	p.Y152D		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	152	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGATGGTGTAGTTGTGGATA	0.527000													52	82	---	---	---	---	0	0	1	0	0
AHI1	54806	broad.mit.edu	37	6	135715913	135715913	+	Splice_Site	SNP	C	G	G			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr6:135715913C>G	uc003qgi.2	-	23	3493	c.3109_splice	c.e23+1	p.G1037_splice	AHI1_uc003qgf.2_Splice_Site|AHI1_uc003qgg.2_Splice_Site_p.G487_splice|AHI1_uc003qgh.2_Splice_Site_p.G1037_splice|AHI1_uc003qgj.2_Splice_Site_p.G1037_splice|AHI1_uc003qgk.3_Splice_Site|AHI1_uc003qgl.3_Splice_Site_p.D1037_splice	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a							adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		AAGGGGCTCACCGGTCTGAGT	0.388000													3	6	---	---	---	---	0	0	1	0	0
BRF2	55290	broad.mit.edu	37	8	37704689	37704689	+	Silent	SNP	G	A	A			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr8:37704689G>A	uc003xkk.2	-	3	329	c.219C>T	c.(217-219)CTC>CTT	p.L73L		NM_018310	NP_060780	Q9HAW0	BRF2_HUMAN	RNA polymerase III transcription initiation	73	1.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter|transcription initiation, DNA-dependent	nucleoplasm	protein binding|zinc ion binding				0		Lung NSC(58;0.118)|all_lung(54;0.195)	BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;1.81e-10)			TCACTCGCCGGAGACCTAGGA	0.498000													18	25	---	---	---	---	0	0	1	0	0
SH2D3C	10044	broad.mit.edu	37	9	130506914	130506914	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr9:130506914T>A	uc004bsc.2	-	7	1871	c.1729A>T	c.(1729-1731)AAG>TAG	p.K577*	SH2D3C_uc010mxo.2_Nonsense_Mutation_p.K417*|SH2D3C_uc004bry.2_Nonsense_Mutation_p.K419*|SH2D3C_uc004brz.3_Nonsense_Mutation_p.K223*|SH2D3C_uc011mak.1_Nonsense_Mutation_p.K223*|SH2D3C_uc004bsa.2_Nonsense_Mutation_p.K420*|SH2D3C_uc004bsb.2_Nonsense_Mutation_p.K509*	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	577					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TCCTTGACCTTGCGCAGAAGG	0.622000													18	115	---	---	---	---	0	0	1	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071478	141071478	+	Missense_Mutation	SNP	G	C	C	rs147600849	by1000genomes	TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr9:141071478G>C	uc004com.2	+	4	1142	c.881G>C	c.(880-882)AGC>ACC	p.S294T	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						ATGTCAGCCAGCTTCATTGGG	0.507000													5	50	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	MT	15149	15149	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chrM:15149T>C	uc004coy.2	+	1	389	c.314T>C	c.(313-315)GTG>GCG	p.V105A	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		ATGTCCTCCCGTGAGGCCAAA	0.453000											OREG0007583	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	11	0	---	---	---	---	0	0	1	0	0
SEPT6	23157	broad.mit.edu	37	X	118797459	118797459	+	Silent	SNP	G	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chrX:118797459G>T	uc004erv.2	-	3	592	c.327C>A	c.(325-327)ATC>ATA	p.I109I	SEPT6_uc010nqk.2_RNA|SEPT6_uc004ers.2_Silent_p.I109I|SEPT6_uc004ert.2_Silent_p.I109I|SEPT6_uc004eru.2_Silent_p.I109I|SEPT6_uc004erw.2_Silent_p.I51I|SEPT6_uc011mtv.1_Silent_p.I51I|SEPT6_uc011mtw.1_Silent_p.I139I	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	109					cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						CCTCTTTGTTGATCTGGTCCC	0.557000													19	282	---	---	---	---	9.95505e-16	1.04656e-15	1	1	0
PLXNB3	5365	broad.mit.edu	37	X	153042366	153042366	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chrX:153042366C>T	uc004fii.2	+	29	5032	c.4858C>T	c.(4858-4860)CTC>TTC	p.L1620F	PLXNB3_uc010nuk.2_Missense_Mutation_p.L1643F|PLXNB3_uc011mzd.1_Missense_Mutation_p.L1259F|SRPK3_uc004fik.2_5'UTR	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	1620	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					AACAGTGGGGCTCGTCCCTCA	0.627000													11	10	---	---	---	---	0	0	1	0	0
GDI1	2664	broad.mit.edu	37	X	153668409	153668409	+	Silent	SNP	C	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chrX:153668409C>T	uc004fli.3	+	5	852	c.510C>T	c.(508-510)GAC>GAT	p.D170D	GDI1_uc011mzo.1_Silent_p.D170D|GDI1_uc004flj.2_5'Flank	NM_001493	NP_001484	P31150	GDIA_HUMAN	GDP dissociation inhibitor 1	170					protein transport|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|midbody	GTPase activator activity|protein binding				0	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCATGCGTGACGTCTACCGGA	0.572000													8	468	---	---	---	---	0	0	1	0	0
DKC1	1736	broad.mit.edu	37	X	154003524	154003524	+	Silent	SNP	T	A	A			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chrX:154003524T>A	uc004fmm.2	+	13	1524	c.1314T>A	c.(1312-1314)GTT>GTA	p.V438V	DKC1_uc010nvf.2_Silent_p.V433V	NM_001363	NP_001354	O60832	DKC1_HUMAN	dyskerin isoform 1	438					cell proliferation|pseudouridine synthesis|rRNA processing|telomere maintenance via telomerase	Cajal body|nucleolus|telomerase holoenzyme complex	protein binding|pseudouridine synthase activity|RNA binding|telomerase activity				0	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CGCAGGTAGTTGCCGAAGCAG	0.468000									Congenital_Dyskeratosis				39	49	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	2370137	2370137	+	IGR	DEL	C	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr1:2370137delC								PEX10 (26127 upstream) : PLCH2 (37617 downstream)																							AACACCTGCTCCCCACAGCCT	0.632													2	4	---	---	---	---					
GJA8	2703	broad.mit.edu	37	1	147381186	147381186	+	Frame_Shift_Del	DEL	G	-	-	rs145146702	byFrequency	TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr1:147381186delG	uc001epu.1	+	2	1167	c.1104delG	c.(1102-1104)GAGfs	p.E368fs		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	368	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CCGTGCCAGAGGGGGAGAAAG	0.612													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	94985788	94985789	+	IGR	INS	-	T	T	rs140557797	by1000genomes	TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr10:94985788_94985789insT								CYP26A1 (148147 upstream) : MYOF (80398 downstream)																							cccagagggagtgttacagtgc	0.000													6	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014188	125014189	+	IGR	INS	-	CAC	CAC			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr10:125014188_125014189insCAC								BUB3 (89302 upstream) : GPR26 (411682 downstream)																							caccaccatcacaccaccacca	0.000													3	5	---	---	---	---					
TP53I11	9537	broad.mit.edu	37	11	44972361	44972365	+	5'Flank	DEL	CAGGG	-	-	rs2863136		TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr11:44972361_44972365delCAGGG	uc001myi.2	-						TP53I11_uc001myf.1_Intron|TP53I11_uc001myj.2_5'UTR|TP53I11_uc001myk.2_5'UTR|TP53I11_uc001myl.2_5'UTR|TP53I11_uc001mym.2_5'UTR	NM_006034	NP_006025	O14683	P5I11_HUMAN	p53-induced protein						negative regulation of cell proliferation|response to stress	integral to membrane				ovary(1)	1						cagggcaggacagggcagggcaggg	0.512													5	4	---	---	---	---					
C11orf95	65998	broad.mit.edu	37	11	63533335	63533337	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr11:63533335_63533337delTCC	uc010rmv.1	-	2	598_600	c.579_581delGGA	c.(577-582)GAGGAA>GAA	p.193_194EE>E	C11orf95_uc001nxr.2_Intron|C11orf95_uc001nxs.2_In_Frame_Del_p.79_80EE>E	NM_001144936	NP_001138408	C9JLR9	CK095_HUMAN	hypothetical protein LOC65998	193_194	Glu-rich.					intracellular	zinc ion binding				0						ctcctcttcttcctcctcctcct	0.532													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	21803376	21803376	+	IGR	DEL	A	-	-	rs149570986		TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr13:21803376delA								MRP63 (50158 upstream) : ZDHHC20 (147134 downstream)																							acacacacacacccacaACCc	0.239													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	97602215	97602217	+	IGR	DEL	CAC	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr14:97602215_97602217delCAC								VRK1 (254265 upstream) : C14orf64 (789730 downstream)																							ccaacatcatcaccaccaccacc	0.000													7	11	---	---	---	---					
CHRNA7	1139	broad.mit.edu	37	15	32322601	32322602	+	5'Flank	INS	-	G	G			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr15:32322601_32322602insG	uc001zft.2	+						CHRNA7_uc010bab.1_5'Flank|CHRNA7_uc010bac.1_5'Flank|CHRNA7_uc010bad.1_5'Flank|CHRNA7_uc010bae.1_5'Flank|CHRNA7_uc010baf.2_5'Flank|CHRNA7_uc010bag.1_5'Flank|CHRNA7_uc010bah.1_5'Flank	NM_000746	NP_000737	P36544	ACHA7_HUMAN	cholinergic receptor, nicotinic, alpha 7						activation of MAPK activity|calcium ion transport|cellular calcium ion homeostasis|memory|negative regulation of tumor necrosis factor production|positive regulation of angiogenesis|positive regulation of cell proliferation|response to hypoxia|response to nicotine	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|beta-amyloid binding|chloride channel regulator activity|nicotinic acetylcholine-activated cation-selective channel activity|protein homodimerization activity|toxin binding			ovary(1)	1		all_lung(180;6.35e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)	Nicotine(DB00184)|Varenicline(DB01273)	GCTGGAGGGATGGgggggcggg	0.470													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	92293110	92293112	+	IGR	DEL	GTA	-	-	rs143131743	by1000genomes	TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr15:92293110_92293112delGTA								SV2B (454462 upstream) : SLCO3A1 (103826 downstream)																							ggtggaggtggtagaggtggagg	0.000													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	76189390	76189392	+	IGR	DEL	CCT	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr18:76189390_76189392delCCT								None (None upstream) : SALL3 (550883 downstream)																							TGGcctctgccctcctcctccct	0.429													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	3977565	3977566	+	IGR	INS	-	CT	CT	rs62107042	by1000genomes	TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr2:3977565_3977566insCT								ALLC (227307 upstream) : None (None downstream)																							cccttcccttcacccttcccct	0.139													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	12015239	12015240	+	IGR	INS	-	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr2:12015239_12015240insC								LPIN1 (47708 upstream) : TRIB2 (841758 downstream)																							cctcacctccgcccccaccctt	0.139													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20150439	20150440	+	IGR	INS	-	ACC	ACC			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr22:20150439_20150440insACC								ZDHHC8 (14910 upstream) : LOC150197 (43415 downstream)																							ccaccatcactaccaccaccac	0.000													8	19	---	---	---	---					
STAB1	23166	broad.mit.edu	37	3	52547907	52547908	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr3:52547907_52547908insC	uc003dej.2	+	32	3431_3432	c.3357_3358insC	c.(3355-3360)CTGCCCfs	p.L1119fs		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1119_1120	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		AGGTCTTACTGCCCCCCCGAGG	0.624													7	517	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	117715376	117715378	+	IGR	DEL	GTG	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr3:117715376_117715378delGTG								None (None upstream) : IGSF11 (904103 downstream)																							ccccctcccCGTGTCCCCCTCCC	0.360													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49115313	49115314	+	IGR	INS	-	G	G			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr4:49115313_49115314insG								CWH43 (51220 upstream) : None (None downstream)																							attccattccattccattccat	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	179874875	179874877	+	IGR	DEL	CCA	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr4:179874875_179874877delCCA								LOC285501 (962972 upstream) : None (None downstream)																							actgccaccgccaccaccgccaa	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	189191996	189191998	+	IGR	DEL	CAG	-	-	rs68175943		TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr4:189191996_189191998delCAG								TRIML1 (123347 upstream) : None (None downstream)																							ccaccagcaccagcagcagcagc	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	13991687	13991689	+	IGR	DEL	GAG	-	-	rs35990762		TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr5:13991687_13991689delGAG								DNAH5 (47098 upstream) : TRIO (152140 downstream)																							agaggagaaagaggaggaggagg	0.158													4	7	---	---	---	---					
GPR98	84059	broad.mit.edu	37	5	90087090	90087090	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr5:90087090delA	uc003kju.2	+	70	14540	c.14444delA	c.(14443-14445)GAAfs	p.E4815fs	GPR98_uc003kjt.2_Frame_Shift_Del_p.E2521fs|GPR98_uc003kjw.2_Frame_Shift_Del_p.E476fs	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4815	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATTGTTACCGAAAATGCAGAG	0.448													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	176115391	176115391	+	IGR	DEL	G	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr5:176115391delG								TSPAN17 (29333 upstream) : UNC5A (122169 downstream)																							gtttgggggtggggggtgggg	0.000													2	4	---	---	---	---					
CALD1	800	broad.mit.edu	37	7	134618624	134618625	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr7:134618624_134618625insC	uc003vrz.2	+	5	1563_1564	c.1104_1105insC	c.(1102-1107)GAGGAGfs	p.E368fs	CALD1_uc003vry.2_Intron|CALD1_uc003vsa.2_Intron|CALD1_uc003vsb.2_Intron|CALD1_uc010lmm.2_Intron|CALD1_uc011kpt.1_Intron|CALD1_uc003vsc.2_Intron|CALD1_uc003vsd.2_Intron|CALD1_uc011kpu.1_Intron|CALD1_uc011kpv.1_Intron|CALD1_uc003vse.2_Frame_Shift_Ins_p.E232fs	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	368_369	3 X 14 AA tandem repeats of E-E-E-K-R-A- A-E-E-R-Q-R-I-K.				cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						gggcagcagaggagaggCAAAG	0.228													2	4	---	---	---	---					
TG	7038	broad.mit.edu	37	8	133978928	133978929	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr8:133978928_133978929insA	uc003ytw.2	+	30	5713_5714	c.5672_5673insA	c.(5671-5673)CTAfs	p.L1891fs	TG_uc010mdw.2_Frame_Shift_Ins_p.L650fs|TG_uc011ljb.1_Frame_Shift_Ins_p.L260fs|TG_uc011ljc.1_Frame_Shift_Ins_p.L45fs|TG_uc010mdx.1_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1891	Type IIIB.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CAGGCAAACCTATGGTGCCTTT	0.480													26	34	---	---	---	---					
KCNK9	51305	broad.mit.edu	37	8	140716885	140716886	+	5'Flank	INS	-	C	C			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr8:140716885_140716886insC	uc003yvf.1	-						KCNK9_uc003yvg.1_5'Flank	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9							integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			CACGAAGTCTTCCCCACCCCCC	0.693													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	137471691	137471691	+	IGR	DEL	G	-	-			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chr9:137471691delG								RXRA (139260 upstream) : COL5A1 (61961 downstream)																							gagaaggagcggggaggggaa	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	10012841	10012842	+	IGR	INS	-	T	T			TCGA-EL-A3H1-01A-11D-A21A-08	TCGA-EL-A3H1-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fceb56-8c6e-4d20-9d2f-5b7042854d23	0569a3fc-932d-4acc-8c2d-3bf9999c3138	g.chrY:10012841_10012842insT								TTTY22 (361987 upstream) : None (None downstream)																							tcctcccttcctcccttcctcc	0.129													4	4	---	---	---	---					
