Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CHD5	26038	broad.mit.edu	37	1	6194802	6194802	+	Silent	SNP	G	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr1:6194802G>C	uc001amb.1	-	19	3088	c.2988C>G	c.(2986-2988)CCC>CCG	p.P996P	CHD5_uc001alz.1_5'Flank|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	996					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GGAAGAGGTAGGGGTGGTTGC	0.587000													76	195	---	---	---	---	0	0	0.014410	0	0
LOC387646	387646	broad.mit.edu	37	10	27538642	27538642	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr10:27538642G>C	uc001its.2	-	1	2594	c.751C>G	c.(751-753)CAA>GAA	p.Q251E		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						GTAACCTCTTGATATACTGGA	0.473000													20	98	---	---	---	---	0	0	0.007413	0	0
TROAP	10024	broad.mit.edu	37	12	49724304	49724304	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr12:49724304G>A	uc001rtx.3	+	13	1843	c.1676G>A	c.(1675-1677)TGC>TAC	p.C559Y	TROAP_uc009zlh.2_Missense_Mutation_p.C559Y|TROAP_uc001rty.2_Missense_Mutation_p.C267Y	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	559	4 X 33 AA approximate tandem repeats.|Cys-rich.|2.				cell adhesion	cytoplasm				ovary(1)	1						CTAGAGTCCTGCTGTAGGAGT	0.597000													6	84	---	---	---	---	0	0	0.001168	0	0
TROAP	10024	broad.mit.edu	37	12	49724313	49724313	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr12:49724313G>T	uc001rtx.3	+	13	1852	c.1685G>T	c.(1684-1686)AGT>ATT	p.S562I	TROAP_uc009zlh.2_Missense_Mutation_p.S562I|TROAP_uc001rty.2_Missense_Mutation_p.S270I	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	562	4 X 33 AA approximate tandem repeats.|Cys-rich.|2.				cell adhesion	cytoplasm				ovary(1)	1						TGCTGTAGGAGTGAGCCTGAG	0.592000													8	91	---	---	---	---	0.000157383	0.000174398	0.003080	1	0
TROAP	10024	broad.mit.edu	37	12	49724403	49724403	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr12:49724403A>G	uc001rtx.3	+	13	1942	c.1775A>G	c.(1774-1776)TAC>TGC	p.Y592C	TROAP_uc009zlh.2_Missense_Mutation_p.Y592C|TROAP_uc001rty.2_Intron	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	592	Cys-rich.|4 X 33 AA approximate tandem repeats.|3.				cell adhesion	cytoplasm				ovary(1)	1						CTAGAGTCCTACTGTAGGATT	0.617000													3	130	---	---	---	---	0	0	0.009096	0	0
DTX1	1840	broad.mit.edu	37	12	113532726	113532726	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr12:113532726G>C	uc001tuk.1	+	6	1696	c.1360G>C	c.(1360-1362)GTG>CTG	p.V454L		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	454	RING-type.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						GCTGTGCCTCGTGGCCATGTA	0.657000													49	94	---	---	---	---	0	0	0.014410	0	0
RASAL1	8437	broad.mit.edu	37	12	113541981	113541981	+	Silent	SNP	G	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr12:113541981G>A	uc001tum.1	-	18	2243	c.1950C>T	c.(1948-1950)ACC>ACT	p.T650T	RASAL1_uc010syp.1_Silent_p.T651T|RASAL1_uc001tul.2_Silent_p.T622T|RASAL1_uc001tun.1_Silent_p.T652T|RASAL1_uc010syq.1_Silent_p.T651T|RASAL1_uc001tuo.3_Silent_p.T651T	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	650	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						ACTGGAGGTAGGTGGTGTGCA	0.697000													8	33	---	---	---	---	0	0	0.010729	0	0
POTEG	404785	broad.mit.edu	37	14	19553531	19553531	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr14:19553531G>A	uc001vuz.1	+	1	167	c.115G>A	c.(115-117)GGC>AGC	p.G39S	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	39										ovary(1)	1						CAGGGGGAGCGGCAAGAGCAA	0.592000													5	342	---	---	---	---	0	0	0.003080	0	0
MAP2K5	5607	broad.mit.edu	37	15	67893044	67893044	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr15:67893044T>G	uc002aqu.2	+	8	1155	c.502T>G	c.(502-504)TAT>GAT	p.Y168D	MAP2K5_uc002aqt.1_Missense_Mutation_p.Y168D|MAP2K5_uc002aqv.2_Missense_Mutation_p.Y168D|MAP2K5_uc002aqw.2_Missense_Mutation_p.Y8D|MAP2K5_uc010ujw.1_Missense_Mutation_p.Y132D	NM_145160	NP_660143	Q13163	MP2K5_HUMAN	mitogen-activated protein kinase kinase 5	168	Protein kinase.				nerve growth factor receptor signaling pathway		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)	2						AGACATACGATATCGGGACAC	0.408000													5	107	---	---	---	---	0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	15	102292801	102292801	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr15:102292801C>A	uc010usj.1	+	4	448	c.389C>A	c.(388-390)ACC>AAC	p.T130N	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		TGCTGTCCAACCTGCACTCGC	0.597000													3	30	---	---	---	---	1.23904e-05	1.41113e-05	0.014758	1	0
Unknown	0	broad.mit.edu	37	15	102292807	102292807	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr15:102292807C>A	uc010usj.1	+	4	454	c.395C>A	c.(394-396)ACT>AAT	p.T132N	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CCAACCTGCACTCGCGTGGGA	0.607000													3	28	---	---	---	---	1.23904e-05	1.41113e-05	0.014758	1	0
Unknown	0	broad.mit.edu	37	15	102304517	102304517	+	5'Flank	SNP	T	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr15:102304517T>C	uc002cbx.1	-						uc002ccb.3_RNA|uc002ccd.2_5'Flank|uc002ccf.3_5'Flank|uc002ccg.3_5'Flank|uc010uth.1_5'Flank|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		GGCACAGCGGTGTGACGAGAC	0.567000													3	21	---	---	---	---	0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	17	39296563	39296563	+	RNA	SNP	G	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr17:39296563G>A	uc010cxk.1	-	1		c.141C>T								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		gacggcagcAGGTGGGCTGGC	0.552000													4	229	---	---	---	---	0	0	0.014758	0	0
ZNF57	126295	broad.mit.edu	37	19	2917961	2917961	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr19:2917961C>T	uc002lwr.2	+	4	1490	c.1342C>T	c.(1342-1344)CAT>TAT	p.H448Y	ZNF57_uc010xha.1_Missense_Mutation_p.H416Y	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	448	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAGCAGCTCCATAAATGTGA	0.443000													4	129	---	---	---	---	0	0	0.014758	0	0
TCF7L1	83439	broad.mit.edu	37	2	85533408	85533408	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr2:85533408A>T	uc002soy.2	+	9	1143	c.1069A>T	c.(1069-1071)ATG>TTG	p.M357L		NM_031283	NP_112573	Q9HCS4	TF7L1_HUMAN	HMG-box transcription factor TCF-3	357	HMG box.				chromatin organization|regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)|central_nervous_system(1)	3						CATGTTGTATATGAAGGAGAT	0.512000													22	58	---	---	---	---	0	0	0.021523	0	0
BOLL	66037	broad.mit.edu	37	2	198640461	198640461	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr2:198640461C>G	uc002uus.2	-	5	590	c.280G>C	c.(280-282)GAA>CAA	p.E94Q	BOLL_uc002uur.2_Missense_Mutation_p.E100Q|BOLL_uc002uut.2_Missense_Mutation_p.E106Q|BOLL_uc010zha.1_Intron|BOLL_uc002uuu.1_Missense_Mutation_p.E100Q	NM_033030	NP_149019	Q8N9W6	BOLL_HUMAN	boule isoform 2	94	RRM.				cell differentiation|meiosis|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm	nucleotide binding|protein binding|RNA binding|translation activator activity			ovary(2)	2						TTAAGTTTTTCAGCCtaaaat	0.239000													10	39	---	---	---	---	0	0	0.008291	0	0
CLTCL1	8218	broad.mit.edu	37	22	19195776	19195776	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr22:19195776T>C	uc002zpb.2	-	22	3563	c.3488A>G	c.(3487-3489)AAG>AGG	p.K1163R	CLTCL1_uc011agv.1_Missense_Mutation_p.K1163R|CLTCL1_uc011agw.1_Missense_Mutation_p.K1163R|CLTCL1_uc011agt.1_5'Flank|CLTCL1_uc011agu.1_5'Flank|CLTCL1_uc010grm.1_Intron|CLTCL1_uc002zpe.2_Missense_Mutation_p.K123R|CLTCL1_uc002zpd.1_Intron	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1163	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					CTCACGGCCCTTTTTCCTGGC	0.403000			T	?	ALCL								3	90	---	---	---	---	0	0	0.009096	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50659166	50659166	+	Missense_Mutation	SNP	T	C	C	rs145066767		TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr22:50659166T>C	uc003bkb.1	-	16	4134	c.3622A>G	c.(3622-3624)ACC>GCC	p.T1208A	TUBGCP6_uc003bka.1_Missense_Mutation_p.T295A|TUBGCP6_uc010har.1_Missense_Mutation_p.T1200A|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1208	7.|9 X 27 AA tandem repeats.				G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CGTGGCCGGGTGGGAGCCATG	0.622000													6	171	---	---	---	---	0	0	0.003080	0	0
MYLK	4638	broad.mit.edu	37	3	123420311	123420311	+	Silent	SNP	C	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr3:123420311C>T	uc003ego.2	-	17	2718	c.2436G>A	c.(2434-2436)CAG>CAA	p.Q812Q	MYLK_uc011bjw.1_Silent_p.Q812Q|MYLK_uc003egp.2_Silent_p.Q743Q|MYLK_uc003egq.2_Silent_p.Q812Q|MYLK_uc003egr.2_Silent_p.Q743Q|MYLK_uc003egs.2_Silent_p.Q636Q|MYLK_uc003egt.2_Silent_p.Q3Q	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	812	Ig-like C2-type 6.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CAGAGCTGTTCTGTAGCATCA	0.607000													32	170	---	---	---	---	0	0	0.021022	0	0
MUC7	4589	broad.mit.edu	37	4	71347138	71347138	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr4:71347138C>T	uc011cat.1	+	4	965	c.677C>T	c.(676-678)CCA>CTA	p.P226L	MUC7_uc011cau.1_Missense_Mutation_p.P226L|MUC7_uc003hfj.2_Missense_Mutation_p.P226L|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	226	3.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CCAGCTCCACCATCTTCCTCA	0.582000													6	376	---	---	---	---	0	0	0.001984	0	0
PRDM9	56979	broad.mit.edu	37	5	23527693	23527693	+	Silent	SNP	T	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr5:23527693T>C	uc003jgo.2	+	11	2678	c.2496T>C	c.(2494-2496)TAT>TAC	p.Y832Y		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	832	C2H2-type 13.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGAAGCCCTATGTCTGCAGGG	0.587000										HNSCC(3;0.000094)			4	255	---	---	---	---	0	0	0.014758	0	0
ODZ2	57451	broad.mit.edu	37	5	167655023	167655023	+	Missense_Mutation	SNP	T	C	C	rs6859235		TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr5:167655023T>C	uc010jjd.2	+	25	5381	c.5381T>C	c.(5380-5382)ATT>ACT	p.I1794T	ODZ2_uc003lzr.3_Missense_Mutation_p.I1564T|ODZ2_uc003lzt.3_Missense_Mutation_p.I1167T|ODZ2_uc010jje.2_Missense_Mutation_p.I1058T	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		ACCCCCACCATTGGACGCTGC	0.512000													19	31	---	---	---	---	0	0	0.014323	0	0
MDN1	23195	broad.mit.edu	37	6	90384187	90384187	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr6:90384187T>A	uc003pnn.1	-	79	12999	c.12883A>T	c.(12883-12885)ATG>TTG	p.M4295L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4295					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TGGCACTGCATGGCCAGGTGC	0.652000													9	19	---	---	---	---	0	0	0.008291	0	0
CENPW	387103	broad.mit.edu	37	6	126661490	126661490	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr6:126661490G>A	uc003qao.2	+	1	238	c.71G>A	c.(70-72)CGA>CAA	p.R24Q	CENPW_uc003qap.3_RNA	NM_001012507	NP_001012525	Q5EE01	CENPW_HUMAN	hypothetical protein LOC387103	24						chromosome, centromeric region|nucleus	DNA binding				0						TTTCTAAAGCGAGTCTTCAAG	0.542000													26	52	---	---	---	---	0	0	0.008361	0	0
SYNE1	23345	broad.mit.edu	37	6	152590391	152590391	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr6:152590391C>A	uc010kiw.2	-	99	19206	c.18604G>T	c.(18604-18606)GTT>TTT	p.V6202F	SYNE1_uc010kiv.2_Missense_Mutation_p.V726F|SYNE1_uc003qos.3_Missense_Mutation_p.V726F|SYNE1_uc003qot.3_Missense_Mutation_p.V6131F|SYNE1_uc003qou.3_Missense_Mutation_p.V6202F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6202	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GTTAGGTCAACATCGCTCTCC	0.562000										HNSCC(10;0.0054)			28	84	---	---	---	---	1.08312e-15	1.30612e-15	0.009535	1	0
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr7:57187809T>G	uc010kzo.2	-	5	1584	c.1313A>C	c.(1312-1314)AAA>ACA	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	438	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453000													6	106	---	---	---	---	0	0	0.004482	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	82	---	---	---	---	0	0	0.006320	0	0
LGI3	203190	broad.mit.edu	37	8	22009364	22009364	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr8:22009364T>C	uc003xav.2	-	6	933	c.644A>G	c.(643-645)GAG>GGG	p.E215G	LGI3_uc010ltu.2_Missense_Mutation_p.E191G	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	215	LRRCT.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		GCAATCGAACTCCCGCAGCGG	0.647000													52	133	---	---	---	---	0	0	0.014410	0	0
FAM47C	442444	broad.mit.edu	37	X	37027200	37027200	+	Silent	SNP	A	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chrX:37027200A>C	uc004ddl.1	+	1	731	c.717A>C	c.(715-717)CCA>CCC	p.P239P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	239										ovary(3)	3						TGGAGCCTCCAGAGACTGGAG	0.637000													4	131	---	---	---	---	0	0	0.009096	0	0
FAM47C	442444	broad.mit.edu	37	X	37027870	37027870	+	Missense_Mutation	SNP	C	A	A	rs140431595		TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chrX:37027870C>A	uc004ddl.1	+	1	1401	c.1387C>A	c.(1387-1389)CAC>AAC	p.H463N		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	463										ovary(3)	3						GTCCAGTCTCCACCTGGAGCC	0.632000													4	145	---	---	---	---	0.000602214	0.000649758	0.014758	1	0
HUWE1	10075	broad.mit.edu	37	X	53652121	53652121	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chrX:53652121G>C	uc004dsp.2	-	18	1990	c.1588C>G	c.(1588-1590)CAT>GAT	p.H530D		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	530					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CAAATACCATGTCGTATGCCA	0.408000													4	131	---	---	---	---	0	0	0.001168	0	0
ACRC	93953	broad.mit.edu	37	X	70823916	70823916	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chrX:70823916A>T	uc004eae.2	+	8	1290	c.789A>T	c.(787-789)GAA>GAT	p.E263D	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	263	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					ATGATTCGGAAGCTCCCGACG	0.552000													5	156	---	---	---	---	0	0	0.003163	0	0
ACRC	93953	broad.mit.edu	37	X	70823918	70823918	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chrX:70823918C>T	uc004eae.2	+	8	1292	c.791C>T	c.(790-792)GCT>GTT	p.A264V	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	264	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					GATTCGGAAGCTCCCGACGAC	0.557000													5	148	---	---	---	---	0	0	0.003163	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004811	75004811	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chrX:75004811T>C	uc004ecj.1	-	1	261	c.76A>G	c.(76-78)ATA>GTA	p.I26V		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	26										ovary(1)|skin(1)	2						GTAGCTTGTATTTCACCTCTG	0.572000													19	65	---	---	---	---	0	0	0.010504	0	0
Unknown	0	broad.mit.edu	37	1	5342903	5342903	+	IGR	DEL	T	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr1:5342903delT								AJAP1 (499053 upstream) : NPHP4 (579967 downstream)																							ACAGGGGGACTAGGGACAAGG	0.607													2	4	---	---	---	---					
RCSD1	92241	broad.mit.edu	37	1	167599437	167599440	+	5'Flank	DEL	CCTC	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr1:167599437_167599440delCCTC	uc001gem.2	+						RCSD1_uc010pli.1_5'Flank	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1											ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					ccctccccttcctccctccctccc	0.480													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr10:42400455delT								None (None upstream) : LOC441666 (426860 downstream)																							cttctttgtgttgtgtgtatt	0.000													18	288	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42599948	42599949	+	IGR	INS	-	TCA	TCA	rs12146204		TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr10:42599948_42599949insTCA								None (None upstream) : LOC441666 (227366 downstream)																							tggaatcatctaatggaatgga	0.000													7	328	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	110072927	110072929	+	IGR	DEL	CAC	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr12:110072927_110072929delCAC								MVK (37857 upstream) : C12orf34 (79261 downstream)																							tcaccaccatcaccaccaccacc	0.010													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	110072974	110072975	+	IGR	INS	-	CAC	CAC	rs147461690	by1000genomes	TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr12:110072974_110072975insCAC								MVK (37904 upstream) : C12orf34 (79215 downstream)																							accacaatcatcaccaccaCTG	0.010													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	41301947	41301948	+	IGR	INS	-	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr13:41301947_41301948insT								FOXO1 (61213 upstream) : MIR320D-1 (16 downstream)																							CTAAATTTTTCTTTTTTTTTCT	0.223													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	45268082	45268083	+	IGR	INS	-	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr14:45268082_45268083insC								FSCB (291583 upstream) : C14orf28 (98424 downstream)																							cacctcccccgcccccccgcct	0.000													4	5	---	---	---	---					
NPIP	9284	broad.mit.edu	37	16	15045758	15045759	+	Frame_Shift_Ins	INS	-	GT	GT			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr16:15045758_15045759insGT	uc002dcy.3	+	8	929_930	c.929_930insGT	c.(928-930)GAGfs	p.E310fs	NPIP_uc002dcx.3_RNA	NM_006985	NP_008916	Q9UND3	NPIP_HUMAN	nuclear pore complex interacting protein	310	Pro-rich.				mRNA transport|protein transport|transmembrane transport	nuclear membrane|nuclear pore					0						ACACCTCCCGAGTGTCTGCTCA	0.559													9	289	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	86621394	86621396	+	IGR	DEL	ATC	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr16:86621394_86621396delATC								FOXL1 (6091 upstream) : FBXO31 (741548 downstream)																							caccgtcattatcatcaccacca	0.000													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	88373352	88373353	+	IGR	INS	-	G	G			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr16:88373352_88373353insG								BANP (262429 upstream) : ZNF469 (120526 downstream)																							ggcagggggatgggggacagac	0.000													2	4	---	---	---	---					
GATA6	2627	broad.mit.edu	37	18	19752073	19752075	+	In_Frame_Del	DEL	ACC	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr18:19752073_19752075delACC	uc002ktt.1	+	2	1233_1235	c.968_970delACC	c.(967-972)TACCAC>TAC	p.H333del	GATA6_uc002ktu.1_In_Frame_Del_p.H333del	NM_005257	NP_005248	Q92908	GATA6_HUMAN	GATA binding protein 6	333	Poly-His.				blood coagulation|cardiac vascular smooth muscle cell differentiation|cellular response to hypoxia|intestinal epithelial cell differentiation|male gonad development|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor-beta1 production|negative regulation of transforming growth factor-beta2 production|outflow tract septum morphogenesis|positive regulation of angiogenesis|positive regulation of cell cycle arrest|positive regulation of transcription from RNA polymerase II promoter|response to drug|response to growth factor stimulus		protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(3)	3	all_cancers(21;0.00271)|all_epithelial(16;7.31e-05)|Ovarian(2;0.116)|Lung NSC(20;0.123)|all_lung(20;0.246)		STAD - Stomach adenocarcinoma(5;0.106)			AACGGGACGTaccaccaccacca	0.650													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	191651108	191651109	+	IGR	INS	-	C	C			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr2:191651108_191651109insC								NAB1 (93617 upstream) : GLS (94438 downstream)																							cagcccccgctcccccccccgc	0.376													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	208665980	208665981	+	IGR	INS	-	C	C	rs148663038	by1000genomes	TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr2:208665980_208665981insC								FZD5 (31837 upstream) : PLEKHM3 (20031 downstream)																							CCCCCACCCCGCCCCCCACCAA	0.475													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	11852654	11852656	+	IGR	DEL	CCT	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr20:11852654_11852656delCCT								None (None upstream) : BTBD3 (18821 downstream)																							CTGCACACTCcctcctcctcctc	0.251													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	49153040	49153042	+	IGR	DEL	AGA	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr22:49153040_49153042delAGA								FAM19A5 (5298 upstream) : C22orf34 (655134 downstream)																							AAggaggaggagaagggaggagg	0.069													3	6	---	---	---	---					
EIF4G1	1981	broad.mit.edu	37	3	184039744	184039746	+	In_Frame_Del	DEL	GAA	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr3:184039744_184039746delGAA	uc003fnp.2	+	10	1570_1572	c.1372_1374delGAA	c.(1372-1374)GAAdel	p.E465del	EIF4G1_uc003fno.1_In_Frame_Del_p.E406del|EIF4G1_uc010hxw.1_In_Frame_Del_p.E301del|EIF4G1_uc003fnt.2_In_Frame_Del_p.E176del|EIF4G1_uc003fnq.2_In_Frame_Del_p.E378del|EIF4G1_uc003fnr.2_In_Frame_Del_p.E301del|EIF4G1_uc010hxx.2_In_Frame_Del_p.E472del|EIF4G1_uc003fns.2_In_Frame_Del_p.E425del|EIF4G1_uc010hxy.2_In_Frame_Del_p.E472del|EIF4G1_uc003fnv.3_In_Frame_Del_p.E465del|EIF4G1_uc003fnu.3_In_Frame_Del_p.E465del|EIF4G1_uc003fnw.2_In_Frame_Del_p.E472del|EIF4G1_uc003fnx.2_In_Frame_Del_p.E269del|EIF4G1_uc003fny.3_In_Frame_Del_p.E269del	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	465	Poly-Glu.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGAGGAAATGgaagaagaagaag	0.443													7	100	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160132730	160132747	+	IGR	DEL	CACTCACACTGCTCTGAT	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr6:160132730_160132747delCACTCACACTGCTCTGAT								SOD2 (18377 upstream) : WTAP (15382 downstream)																							ccataaccaccactcacactgctctgatcaccataacc	0.000													11	398	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	170402905	170402905	+	IGR	DEL	G	-	-	rs66702563		TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr6:170402905delG								C6orf208 (199936 upstream) : LOC154449 (160517 downstream)																							agcgtggtgtgggggggaccc	0.144													3	5	---	---	---	---					
LMTK2	22853	broad.mit.edu	37	7	97736519	97736521	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr7:97736519_97736521delGCT	uc003upd.1	+	1	323_325	c.30_32delGCT	c.(28-33)AGGCTG>AGG	p.L16del		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	16					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					TGCGGCGGAGGCTGCTGCTGCTG	0.665													3	5	---	---	---	---					
CDK5	1020	broad.mit.edu	37	7	150754217	150754217	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr7:150754217delT	uc003wir.1	-	2	129	c.68delA	c.(67-69)AACfs	p.N23fs	CDK5_uc003wis.1_Frame_Shift_Del_p.N23fs|SLC4A2_uc003wit.3_5'Flank	NM_004935	NP_004926	Q00535	CDK5_HUMAN	cyclin-dependent kinase 5 isoform 1	23	Protein kinase.				activation of pro-apoptotic gene products|blood coagulation|cell division|cell proliferation|embryo development|negative regulation of transcription, DNA-dependent|positive regulation of neuron apoptosis	axon|cytosol|dendrite|growth cone|lamellipodium|membrane|neuromuscular junction|neuronal cell body	acetylcholine receptor activator activity|ATP binding|cyclin-dependent protein kinase activity|ErbB-2 class receptor binding|ErbB-3 class receptor binding|tau-protein kinase activity			lung(1)|central_nervous_system(1)	2		Breast(660;0.159)|Ovarian(593;0.182)	OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.008)|Lung(243;0.00942)|BRCA - Breast invasive adenocarcinoma(188;0.242)		AGTCTCCCGGTTTTTGGCCTT	0.582													7	528	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	43130156	43130158	+	IGR	DEL	CCT	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr8:43130156_43130158delCCT								HGSNAT (72187 upstream) : POTEA (17427 downstream)																							tcttcctccccctcctcctcctt	0.044													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	96287848	96287849	+	IGR	INS	-	CCTCCCTG	CCTCCCTG			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr8:96287848_96287849insCCTCCCTG								C8orf37 (6411 upstream) : GDF6 (866711 downstream)																							ctctctccctccctccctgcct	0.158													4	2	---	---	---	---					
PTPLAD2	401494	broad.mit.edu	37	9	21007045	21007046	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr9:21007045_21007046insT	uc010miq.1	-	7	735_736	c.689_690insA	c.(688-690)AAGfs	p.K230fs	PTPLAD2_uc003zoj.1_Frame_Shift_Ins_p.K193fs|PTPLAD2_uc010mir.1_Frame_Shift_Ins_p.K230fs	NM_001010915	NP_001010915	Q5VWC8	HACD4_HUMAN	protein tyrosine phosphatase-like A domain	230	Cytoplasmic (Potential).|Poly-Lys.				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	lyase activity			skin(1)	1				Lung(24;6.02e-14)|LUSC - Lung squamous cell carcinoma(38;1.29e-10)		TTCACATCTTCTTTTTTTTAAT	0.371													8	145	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	27772009	27772009	+	IGR	DEL	C	-	-	rs10968100		TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr9:27772009delC								C9orf72 (198167 upstream) : LINGO2 (176519 downstream)																							ATCTCCCCTTCCCCCCATCCT	0.458													6	2	---	---	---	---					
LOC642929	642929	broad.mit.edu	37	9	43140785	43140785	+	RNA	DEL	A	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr9:43140785delA	uc004acy.3	-	5		c.737delT				NR_027472				Homo sapiens clone HLS_IMAGE_1031047 mRNA sequence.												0						GGCAGAGTGGAAACTGCAACT	0.468													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	137822603	137822603	+	IGR	DEL	T	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chr9:137822603delT								FCN1 (12794 upstream) : OLFM1 (144486 downstream)																							CTCCCCCCCCTACCCGCCCCC	0.602													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	11867	11867	+	RNA	DEL	C	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chrM:11867delC	uc004cov.3	+	1		c.1290delC			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		ACCTCGCCTTACCCCCCACTA	0.453													154	13	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	3954207	3954209	+	IGR	DEL	TCC	-	-			TCGA-EL-A3N3-01A-11D-A20C-08	TCGA-EL-A3N3-11A-11D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	654d3ec5-e7cb-464b-bf31-ad618f854ff2	9305168f-f9e0-4aa0-a2a9-709e20edff10	g.chrX:3954207_3954209delTCC								PRKX (322546 upstream) : None (None downstream)																							TCCTtcttcttcctcctcctcct	0.148													3	4	---	---	---	---					
