Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	A	A	rs28392876	by1000genomes	TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr1:16946438G>A	uc010ocf.1	-	3		c.460C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCCTTCCGCCGGGCCAGCAGC	0.672													3	21	---	---	---	---	0	0	6.4e-05	0	0
FHL3	2275	broad.mit.edu	37	1	38463709	38463709	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr1:38463709G>C	uc001ccj.2	-	4	514	c.427C>G	c.(427-429)CCC>GCC	p.P143A	FHL3_uc001cck.2_Missense_Mutation_p.P143A|FHL3_uc001ccl.2_Missense_Mutation_p.P143A|FHL3_uc001ccm.2_Missense_Mutation_p.P35A|FHL3_uc009vvl.1_Missense_Mutation_p.P143A	NM_004468	NP_004459	Q13643	FHL3_HUMAN	four and a half LIM domains 3	143	LIM zinc-binding 2.				muscle organ development		zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CCCTTGTCGGGCACAAAAGAA	0.622													47	81	---	---	---	---	0	0	0.000781405	0	0
GBP5	115362	broad.mit.edu	37	1	89733152	89733152	+	Missense_Mutation	SNP	A	C	C			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr1:89733152A>C	uc001dnc.2	-	5	913	c.376T>G	c.(376-378)TTT>GTT	p.F126V	GBP5_uc001dnd.2_Missense_Mutation_p.F126V|GBP5_uc001dne.1_Missense_Mutation_p.F126V	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	126						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		TTGTACACAAAGGTGCTGCTC	0.448													3	45	---	---	---	---	0	0	6.4e-05	0	0
HRAS	3265	broad.mit.edu	37	11	533874	533874	+	Missense_Mutation	SNP	T	C	C	rs121913233		TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr11:533874T>C	uc001lpv.2	-	3	370	c.182A>G	c.(181-183)CAG>CGG	p.Q61R	HRAS_uc010qvw.1_Missense_Mutation_p.Q61R|HRAS_uc010qvx.1_Missense_Mutation_p.Q61R|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	61	GTP.		Q -> L (in melanoma; strongly reduced GTP hydrolysis in the presence of RAF1; increases transformation of cultured cell lines).	Q->V: Strongly increased transformation of cultured cell lines.|Q->I: Moderately increased transformation of cultured cell lines.	activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.Q61R(112)|p.Q61L(93)|p.Q61K(39)|p.Q61H(20)|p.Q61P(3)|p.Q61Q(1)|p.Q61E(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	GTACTCCTCCTGGCCGGCGGT	0.597	Q61L(KNS62_LUNG)|Q61L(NCIH1915_LUNG)|Q61L(KYSE30_OESOPHAGUS)	6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			52	72	---	---	---	---	0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	11	71513917	71513918	+	RNA	DNP	CA	TG	TG			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr11:71513917_71513918CA>TG	uc001oqx.1	-	3		c.682_683TG>CA								Homo sapiens cDNA clone IMAGE:5297769.																		TTGAAGTTCACAGCACACGCAG	0.574													5	38	---	---	---	---	0	0	6.4e-05	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028751	13028751	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr12:13028751G>C	uc010sho.1	+	1	341	c.319G>C	c.(319-321)GGC>CGC	p.G107R		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						GGTGTTTGACGGCATCCCACC	0.612													4	10	---	---	---	---	0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	16	32265186	32265186	+	RNA	SNP	G	A	A			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr16:32265186G>A	uc002ecy.2	+	2		c.438G>A			uc010cav.1_Intron					Homo sapiens mRNA for TP53TG3b, complete cds.																		TAAGGGCCGCGGATGTGGCAG	0.622													3	7	---	---	---	---	0	0	3.59834e-05	0	0
TEX14	56155	broad.mit.edu	37	17	56690784	56690784	+	Nonsense_Mutation	SNP	G	A	A	rs141801212	byFrequency	TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr17:56690784G>A	uc010dcz.1	-	9	1139	c.1021C>T	c.(1021-1023)CGA>TGA	p.R341*	TEX14_uc002iwr.1_Nonsense_Mutation_p.R335*|TEX14_uc002iws.1_Nonsense_Mutation_p.R335*|TEX14_uc010dda.1_Nonsense_Mutation_p.R115*	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	341	Protein kinase.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CAGTTTACTCGTTCATGAAGG	0.517													41	75	---	---	---	---	0	0	0.000228196	0	0
CHST8	64377	broad.mit.edu	37	19	34262953	34262953	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr19:34262953G>A	uc002nus.3	+	5	765	c.260G>A	c.(259-261)CGC>CAC	p.R87H	CHST8_uc002nut.3_Missense_Mutation_p.R87H|CHST8_uc002nuu.2_Missense_Mutation_p.R87H	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	87	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					CCGAGGGGCCGCAACCTGCCA	0.667													14	30	---	---	---	---	0	0	0.000308642	0	0
LRFN3	79414	broad.mit.edu	37	19	36430922	36430922	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr19:36430922G>A	uc002oco.2	+	2	1047	c.595G>A	c.(595-597)GCT>ACT	p.A199T		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	199	Extracellular (Potential).|LRR 6.				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GCCCGCCGGCGCTTTTTCCCG	0.677													74	156	---	---	---	---	0	0	0.000781405	0	0
UBOX5	22888	broad.mit.edu	37	20	3090865	3090865	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr20:3090865C>T	uc002whw.2	-	5	1683	c.1513G>A	c.(1513-1515)GGC>AGC	p.G505S	uc002whv.1_Intron|UBOX5_uc002whx.2_Missense_Mutation_p.G451S|UBOX5_uc002why.1_Missense_Mutation_p.R503Q	NM_014948	NP_055763	O94941	RNF37_HUMAN	U-box domain containing 5 isoform a	505	RING-type.					nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2						AGGAGGTGGCCGCAGGGCAGC	0.627													5	154	---	---	---	---	0	0	0.000602214	0	0
FAM182B	728882	broad.mit.edu	37	20	25848617	25848617	+	RNA	SNP	A	G	G			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr20:25848617A>G	uc002wvd.1	-	1		c.170T>C								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ggcaggcctgaggctgggatg	0													3	5	---	---	---	---	0	0	6.4e-05	0	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	Missense_Mutation	SNP	G	C	C	rs145412486	by1000genomes	TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr20:29628236G>C	uc010ztl.1	+	3	180	c.148G>C	c.(148-150)GCT>CCT	p.A50P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A2P					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGGAAAATGGCTTTGTTGGC	0.333													3	79	---	---	---	---	0	0	3.59834e-05	0	0
LOC96610	96610	broad.mit.edu	37	22	22661187	22661187	+	RNA	SNP	G	A	A			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr22:22661187G>A	uc011aim.1	+	27		c.1613G>A			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_Intron|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						CCCCCACCCCGTCATGTACAG	0.413													10	25	---	---	---	---	0	0	0.000442599	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659741	24659741	+	RNA	SNP	G	A	A	rs144618782	by1000genomes	TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr22:24659741G>A	uc002zzs.3	+	7		c.3473G>A			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CTGTGGGAGGGGGGAATGTTC	0.622													3	12	---	---	---	---	0	0	0.00024832	0	0
PCM1	5108	broad.mit.edu	37	8	17830011	17830011	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr8:17830011T>G	uc003wyi.3	+	23	4180	c.3758T>G	c.(3757-3759)TTT>TGT	p.F1253C	PCM1_uc011kyh.1_Missense_Mutation_p.F1253C|PCM1_uc003wyj.3_Missense_Mutation_p.F1254C|PCM1_uc011kyi.1_Missense_Mutation_p.F115C|PCM1_uc011kyj.1_5'UTR|PCM1_uc003wyk.3_5'UTR	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1253					centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		AGACGCCAGTTTGATGAAGAA	0.393			T	RET|JAK2	papillary thyroid|CML|MPD								6	94	---	---	---	---	0	0	3.59834e-05	0	0
CYP11B1	1584	broad.mit.edu	37	8	143957756	143957756	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr8:143957756C>G	uc003yxi.2	-	5	862	c.855G>C	c.(853-855)CAG>CAC	p.Q285H	CYP11B1_uc010mex.2_5'Flank|CYP11B1_uc003yxh.2_5'UTR|CYP11B1_uc003yxj.2_Missense_Mutation_p.Q285H|CYP11B1_uc010mey.2_Missense_Mutation_p.Q356H	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	285					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	TGCTGGTGTACTGTTGAGGGC	0.582									Familial_Hyperaldosteronism_type_I				4	43	---	---	---	---	0	0	3.59834e-05	0	0
LRRC8A	56262	broad.mit.edu	37	9	131670993	131670993	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr9:131670993C>T	uc004bwl.3	+	3	1804	c.1550C>T	c.(1549-1551)ACA>ATA	p.T517I	LRRC8A_uc010myp.2_Missense_Mutation_p.T517I|LRRC8A_uc010myq.2_Missense_Mutation_p.T517I	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	517	LRR 6.				pre-B cell differentiation	integral to membrane					0						AGCCTGAAGACACTGGAGGAG	0.622													15	41	---	---	---	---	0	0	0.000308642	0	0
Unknown	0	broad.mit.edu	37	10	42529391	42529391	+	IGR	DEL	G	-	-	rs71210893		TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr10:42529391delG								None (None upstream) : LOC441666 (297924 downstream)																							attatatgaagaaatcccgtt	0.000													2	4	---	---	---	---					
SLC24A1	9187	broad.mit.edu	37	15	65918177	65918179	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr15:65918177_65918179delCTG	uc010ujf.1	+	2	2046_2048	c.1759_1761delCTG	c.(1759-1761)CTGdel	p.L591del	SLC24A1_uc010ujd.1_In_Frame_Del_p.L591del|SLC24A1_uc010uje.1_In_Frame_Del_p.L591del|SLC24A1_uc010ujg.1_In_Frame_Del_p.L591del|SLC24A1_uc010ujh.1_In_Frame_Del_p.L591del	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	591	Helical; (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						GTGGGAGAGCCTGCTGCTGCTGC	0.547													7	119	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	9250235	9250236	+	IGR	INS	-	T	T			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr16:9250235_9250236insT								C16orf72 (36690 upstream) : GRIN2A (597031 downstream)																							GAGGTCCTTTATTTTTTTTTTT	0.376													3	3	---	---	---	---					
TBC1D29	26083	broad.mit.edu	37	17	28885450	28885451	+	5'Flank	INS	-	T	T			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr17:28885450_28885451insT	uc002hfh.2	+						uc002hfg.1_5'Flank|TBC1D29_uc002hfi.2_5'Flank	NM_015594	NP_056409	Q9UFV1	TBC29_HUMAN	TBC1 domain family, member 29							intracellular	Rab GTPase activator activity				0		Myeloproliferative disorder(56;0.0255)				TGGCATAAACCTCCAGCAAGGG	0.540													8	19	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	91778108	91778109	+	IGR	INS	-	CT	CT	rs145938704		TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr2:91778108_91778109insCT								None (None upstream) : LOC654342 (27083 downstream)																							TTCCTTCTTTCCTCTCTCTCTC	0.559													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	21797194	21797194	+	IGR	DEL	T	-	-			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr21:21797194delT								None (None upstream) : C21orf131 (317720 downstream)																							TTGAGCATCATTTTTTTTTTA	0.368													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16436529	16436529	+	IGR	DEL	G	-	-			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr22:16436529delG								POTEH (148592 upstream) : OR11H1 (12297 downstream)																							CTGGAATCCTGGGGGAAAAAA	0.413													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	180605394	180605395	+	IGR	INS	-	T	T			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr3:180605394_180605395insT								CCDC39 (149732 upstream) : FXR1 (25057 downstream)																							TTTGACTAAGGTTTTTTTTTTT	0.272													3	4	---	---	---	---					
STAG3L2	442582	broad.mit.edu	37	7	74300557	74300564	+	Frame_Shift_Del	DEL	AGAGCTCC	-	-			TCGA-EM-A2CK-01A-11D-A17V-08	TCGA-EM-A2CK-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	83e36900-8a9a-4356-94d0-ca431a535382	68d9273f-e401-4444-a139-1cb3ae1f89f5	g.chr7:74300557_74300564delAGAGCTCC	uc003ubj.3	-	5	625_632	c.243_250delGGAGCTCT	c.(241-252)CTGGAGCTCTTCfs	p.L81fs	STAG3L2_uc011kfj.1_RNA	NM_001025202	NP_001020373	P0CL84	ST3L2_HUMAN	STAG3-like	81_84	SCD.					nucleus	binding				0						CGGCCAGTGAAGAGCTCCAGGCGTGCGG	0.572													3	6	---	---	---	---					
