Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LYPLAL1	127018	broad.mit.edu	37	1	219384958	219384958	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr1:219384958C>T	uc001hlq.3	+	5	643	c.602C>T	c.(601-603)ACG>ATG	p.T201M	LYPLAL1_uc001hlr.3_Missense_Mutation_p.T185M|LYPLAL1_uc001hls.3_Missense_Mutation_p.T77M|LYPLAL1_uc001hlt.3_Missense_Mutation_p.T77M|LYPLAL1_uc009xds.2_Missense_Mutation_p.T150M	NM_138794	NP_620149	Q5VWZ2	LYPL1_HUMAN	lysophospholipase-like 1	201						cytoplasm	lysophospholipase activity				0				GBM - Glioblastoma multiforme(131;0.055)|all cancers(67;0.105)|OV - Ovarian serous cystadenocarcinoma(81;0.116)		GGAGTGACCACGAAGTTTCAT	0.373													15	64	---	---	---	---	0	0	0.006122	0	0
TLL2	7093	broad.mit.edu	37	10	98155751	98155751	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr10:98155751C>T	uc001kml.1	-	12	1637	c.1411G>A	c.(1411-1413)GAT>AAT	p.D471N	TLL2_uc009xvf.1_Missense_Mutation_p.D449N	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	471	CUB 2.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		TGACCGGCATCTTTGTTCATG	0.517											OREG0020398	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	94	---	---	---	---	0	0	0.014410	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587													5	64	---	---	---	---	0	0	0.000602	0	0
UBQLN3	50613	broad.mit.edu	37	11	5528997	5528997	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr11:5528997T>C	uc001may.1	-	2	1878	c.1792A>G	c.(1792-1794)ATG>GTG	p.M598V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	598										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTTGCAGCATATGGAGAAAG	0.542													59	40	---	---	---	---	0	0	0.014410	0	0
LRTM2	654429	broad.mit.edu	37	12	1940261	1940261	+	Silent	SNP	G	A	A			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr12:1940261G>A	uc001qjt.2	+	4	1034	c.228G>A	c.(226-228)TTG>TTA	p.L76L	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Silent_p.L76L|LRTM2_uc010sdx.1_Silent_p.L76L|LRTM2_uc001qjv.2_Intron	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	76	LRR 1.|Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			TCTTGCTCTTGAACAATAAGC	0.642													60	192	---	---	---	---	0	0	0.014410	0	0
C14orf109	26175	broad.mit.edu	37	14	93652904	93652904	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr14:93652904A>G	uc010auo.2	+	2	756	c.398A>G	c.(397-399)AAA>AGA	p.K133R	MOAP1_uc001ybj.2_5'Flank|C14orf109_uc001ybk.3_Missense_Mutation_p.K95R	NM_001098621	NP_001092091	Q8N6I4	CN109_HUMAN	hypothetical protein LOC26175 isoform 1	127						integral to membrane					0		all_cancers(154;0.11)|Acute lymphoblastic leukemia(33;0.0488)		Epithelial(152;0.176)|all cancers(159;0.197)|COAD - Colon adenocarcinoma(157;0.202)		GCTGATCCCAAAACAGTGGGC	0.418													5	239	---	---	---	---	0	0	0.000602	0	0
C14orf73	91828	broad.mit.edu	37	14	103568560	103568560	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr14:103568560C>T	uc001ymk.2	+	2	576	c.500C>T	c.(499-501)ACC>ATC	p.T167I		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	167											0		Melanoma(154;0.155)	Epithelial(46;0.221)			GCCTCGCGCACCTTTGAGCAG	0.657													6	19	---	---	---	---	0	0	0.001168	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr16:32890622T>G	uc002edh.1	-	5	440	c.264A>C	c.(262-264)AAA>AAC	p.K88N	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CGTTGGTGTTTTTGTAGACCA	0.512													3	36	---	---	---	---	0	0	0.004672	0	0
FUK	197258	broad.mit.edu	37	16	70509259	70509259	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr16:70509259T>C	uc002eyy.2	+	19	2442	c.2384T>C	c.(2383-2385)CTG>CCG	p.L795P	FUK_uc010cft.2_Missense_Mutation_p.L827P|FUK_uc002eyz.2_Missense_Mutation_p.L286P	NM_145059	NP_659496	Q8N0W3	FUK_HUMAN	fucokinase	795						cytoplasm	ATP binding|fucokinase activity			ovary(1)	1		Ovarian(137;0.0694)				GCAGGGGCCCTGCTGAAGGCG	0.627													3	86	---	---	---	---	0	0	0.004672	0	0
KRTAP4-2	85291	broad.mit.edu	37	17	39334209	39334209	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr17:39334209A>G	uc002hwd.2	-	1	252	c.208T>C	c.(208-210)TGC>CGC	p.C70R		NM_033062	NP_149051	Q9BYR5	KRA42_HUMAN	keratin associated protein 4-2	70	20 X 5 AA repeats OF C-C-[GRQVS]-[SPT]- [VSTQ].|12.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			GTCCTGCAGCAAGTGGTCTGG	0.672													24	148	---	---	---	---	0	0	0.004656	0	0
EHBP1	23301	broad.mit.edu	37	2	62934326	62934326	+	Translation_Start_Site	SNP	C	G	G			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr2:62934326C>G	uc002sby.2	+	2	482	c.0C>G	c.(-2-2)ATCAT>ATGAT		EHBP1_uc010fcp.2_Translation_Start_Site|EHBP1_uc010fcq.1_Translation_Start_Site|EHBP1_uc002sbx.2_Translation_Start_Site|EHBP1_uc002sbz.2_Translation_Start_Site|EHBP1_uc002scb.2_Translation_Start_Site|EHBP1_uc002sca.2_Translation_Start_Site	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1							cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			GACTGATCATCATGGCTTCAG	0.458									Hereditary_Prostate_Cancer				14	32	---	---	---	---	0	0	0.010504	0	0
EHBP1	23301	broad.mit.edu	37	2	62934336	62934336	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr2:62934336G>T	uc002sby.2	+	2	492	c.10G>T	c.(10-12)GTT>TTT	p.V4F	EHBP1_uc010fcp.2_Missense_Mutation_p.V4F|EHBP1_uc010fcq.1_Missense_Mutation_p.V4F|EHBP1_uc002sbx.2_Missense_Mutation_p.V4F|EHBP1_uc002sbz.2_Missense_Mutation_p.V4F|EHBP1_uc002scb.2_Missense_Mutation_p.V4F|EHBP1_uc002sca.2_Missense_Mutation_p.V4F	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	4						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			CATGGCTTCAGTTTGGAAGAG	0.463									Hereditary_Prostate_Cancer				19	36	---	---	---	---	3.6726e-16	6.7331e-16	0.003954	1	0
ETAA1	54465	broad.mit.edu	37	2	67630066	67630066	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr2:67630066G>T	uc002sdz.1	+	4	641	c.502G>T	c.(502-504)GTA>TTA	p.V168L		NM_019002	NP_061875	Q9NY74	ETAA1_HUMAN	ETAA16 protein	168						cytoplasm|nucleus				ovary(3)|large_intestine(1)	4						TACTCCCAGTGTAGCAAAAGG	0.353													3	51	---	---	---	---	0.004672	0.00822272	0.004672	1	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612													4	12	---	---	---	---	0	0	0.009096	0	0
C2orf83	56918	broad.mit.edu	37	2	228476316	228476316	+	Missense_Mutation	SNP	C	T	T	rs111332429	byFrequency	TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr2:228476316C>T	uc002vph.2	-	3	482	c.247G>A	c.(247-249)GTA>ATA	p.V83I	C2orf83_uc010zlu.1_3'UTR	NM_020161	NP_064546	Q53S99	CB083_HUMAN	hypothetical protein LOC56918 isoform 1	83						membrane	folic acid binding|reduced folate carrier activity				0						CATGTCTGTACGGTAAGTTTC	0.468													6	55	---	---	---	---	0	0	0.001168	0	0
FAM182B	728882	broad.mit.edu	37	20	25848685	25848685	+	RNA	SNP	G	C	C			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr20:25848685G>C	uc002wvd.1	-	1		c.102C>G								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ggccctttgggactcctggca	0													2	9	---	---	---	---	0	0	0.000602	0	0
AP3B1	8546	broad.mit.edu	37	5	77311327	77311327	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr5:77311327G>A	uc003kfj.2	-	26	3163	c.3038C>T	c.(3037-3039)GCA>GTA	p.A1013V		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	1013					endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		ATTCTGTGGTGCAGCAATGAT	0.383									Hermansky-Pudlak_syndrome				24	75	---	---	---	---	0	0	0.003954	0	0
COL12A1	1303	broad.mit.edu	37	6	75843113	75843113	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr6:75843113T>C	uc003phs.2	-	34	5856	c.5690A>G	c.(5689-5691)TAT>TGT	p.Y1897C	COL12A1_uc003pht.2_Missense_Mutation_p.Y733C	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1897	Fibronectin type-III 14.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AAGAATGGCATAATTGGTATT	0.368													17	39	---	---	---	---	0	0	0.006122	0	0
GPR141	353345	broad.mit.edu	37	7	37780300	37780300	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr7:37780300C>T	uc003tfm.1	+	1	305	c.305C>T	c.(304-306)ACG>ATG	p.T102M	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	102	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						ATGTACCTCACGTTCCTATTC	0.473													22	78	---	---	---	---	0	0	0.010504	0	0
CNPY4	245812	broad.mit.edu	37	7	99720117	99720117	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr7:99720117G>A	uc003uto.2	+	3	362	c.259G>A	c.(259-261)GAA>AAA	p.E87K	TAF6_uc011kji.1_5'Flank	NM_152755	NP_689968	Q8N129	CNPY4_HUMAN	canopy 4 homolog precursor	87						extracellular region					0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GACAAGGCTGGAAGAGGCCTT	0.537													53	249	---	---	---	---	0	0	0.014410	0	0
SHROOM2	357	broad.mit.edu	37	X	9862838	9862838	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chrX:9862838A>G	uc004csu.1	+	4	980	c.890A>G	c.(889-891)AAT>AGT	p.N297S		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	297					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				GGGAGGTCCAATTTTGGGCCA	0.612													17	65	---	---	---	---	0	0	0.007413	0	0
NAV3	89795	broad.mit.edu	37	12	78224975	78224976	+	5'Flank	INS	-	AG	AG	rs77759134	by1000genomes	TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr12:78224975_78224976insAG	uc001syp.2	+						NAV3_uc001syo.2_5'Flank	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3							nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						gagagagagacagagagagaga	0.208										HNSCC(70;0.22)			2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	21677699	21677699	+	IGR	DEL	A	-	-			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr13:21677699delA								LATS2 (41977 upstream) : SAP18 (36954 downstream)																							ctcggtttccaaaaaaaaaGG	0.219													2	4	---	---	---	---					
SAMD4A	23034	broad.mit.edu	37	14	55034462	55034462	+	5'Flank	DEL	C	-	-			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr14:55034462delC	uc001xbb.2	+						SAMD4A_uc001xba.2_5'Flank|SAMD4A_uc001xbc.2_5'Flank	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform						positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						GTAACTGAAACCAGACAAGAG	0.542													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	108520610	108520611	+	IGR	INS	-	T	T			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr2:108520610_108520611insT								RGPD4 (11611 upstream) : SLC5A7 (82384 downstream)																							AAttttttgtcttttttttttt	0.337													3	6	---	---	---	---					
MIR1324	100302212	broad.mit.edu	37	3	75679779	75679779	+	5'Flank	DEL	C	-	-			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr3:75679779delC	hsa-mir-1324|MI0006657	+																							0						AGCCATGGGGCCCAGAACCAC	0.617													3	6	---	---	---	---					
GRM6	2916	broad.mit.edu	37	5	178408846	178408846	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr5:178408846delG	uc003mjr.2	-	10	2625	c.2446delC	c.(2446-2448)CAGfs	p.Q816fs	GRM6_uc003mjq.2_Frame_Shift_Del_p.Q219fs	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	816	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GTGGTTGTCTGGATGTAGATC	0.577													67	227	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	180699086	180699087	+	RNA	INS	-	A	A	rs11381664		TCGA-EM-A2OY-01A-11D-A202-08	TCGA-EM-A2OY-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b5e7c18-f91e-4c4f-9b61-c0a5c8a572ca	0af5b0a2-abc5-4563-b111-e4058014700e	g.chr5:180699086_180699087insA	uc003mnq.2	+	3		c.450_451insA								Homo sapiens cDNA clone IMAGE:3910094, partial cds.																		CTTTCCATCAGAAAAAAAAAAA	0.406													4	2	---	---	---	---					
