Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LOC284232	284232	broad.mit.edu	37	13	19409435	19409435	+	RNA	SNP	A	C	C			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr13:19409435A>C	uc010tcj.1	-	1		c.36675T>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTTTATATTCAACTAGGTTCA	0.179000													2	11	---	---	---	---	0	0	0.004672	0	0
LOC284232	284232	broad.mit.edu	37	13	19414102	19414102	+	RNA	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr13:19414102C>T	uc010tcj.1	-	1		c.32008G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GAATTTTTACCAAAGATTGAT	0.274000													4	14	---	---	---	---	0	0	0.009096	0	0
LOC284232	284232	broad.mit.edu	37	13	19414237	19414237	+	RNA	SNP	A	T	T	rs3963827		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr13:19414237A>T	uc010tcj.1	-	1		c.31873T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATTCTTCTCTATTTTTTTTGT	0.294000													4	21	---	---	---	---	0	0	0.014758	0	0
DCT	1638	broad.mit.edu	37	13	95121126	95121126	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr13:95121126C>T	uc001vlv.3	-	2	896	c.469G>A	c.(469-471)GTG>ATG	p.V157M	DCT_uc010afh.2_Missense_Mutation_p.V157M	NM_001922	NP_001913	P40126	TYRP2_HUMAN	dopachrome tautomerase isoform 1	157	Lumenal, melanosome (Potential).				epidermis development|melanin biosynthetic process from tyrosine	cytosol|integral to membrane|melanosome membrane|microsome	copper ion binding|dopachrome isomerase activity|oxidoreductase activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;3.71e-42)|all_epithelial(2;3.76e-31)|all_lung(2;5.16e-14)|Lung NSC(4;1.33e-13)|Breast(118;0.0013)|Hepatocellular(115;0.00886)|Renal(2;0.00988)		COAD - Colon adenocarcinoma(199;7.07e-05)|GBM - Glioblastoma multiforme(99;0.000472)		GTGGTGATCACGTAGTCGGGG	0.517000													96	180	---	---	---	---	0	0	0.014410	0	0
SLC12A6	9990	broad.mit.edu	37	15	34537938	34537938	+	Silent	SNP	G	A	A			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr15:34537938G>A	uc001zhw.2	-	13	1944	c.1780C>T	c.(1780-1782)CTG>TTG	p.L594L	SLC12A6_uc001zhv.2_Silent_p.L543L|SLC12A6_uc001zhx.2_Silent_p.L579L|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Silent_p.L535L|SLC12A6_uc001zib.2_Silent_p.L585L|SLC12A6_uc001zic.2_Silent_p.L594L|SLC12A6_uc010bau.2_Silent_p.L594L|SLC12A6_uc001zid.2_Silent_p.L535L|SLC12A6_uc001zht.2_RNA|SLC12A6_uc001zhu.2_Silent_p.L406L	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	594					angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	GCTTGTAGCAGCCTCGGTGCA	0.473000													5	89	---	---	---	---	0	0	0.014758	0	0
NKD1	85407	broad.mit.edu	37	16	50666208	50666208	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr16:50666208C>T	uc002egg.1	+	9	936	c.712C>T	c.(712-714)CGC>TGC	p.R238C		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	238					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		GGGTGACAGCCGCCTGGAGCA	0.562000													27	37	---	---	---	---	0	0	0.008361	0	0
PLD2	5338	broad.mit.edu	37	17	4719165	4719165	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr17:4719165G>A	uc002fzc.2	+	14	1492	c.1391G>A	c.(1390-1392)CGC>CAC	p.R464H	PLD2_uc010vsj.1_Missense_Mutation_p.R321H|PLD2_uc002fzd.2_Missense_Mutation_p.R464H	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	464	PLD phosphodiesterase 1.|Catalytic.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	GCCTATGGCCGCTGGGATGAC	0.597000											OREG0024105	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	140	---	---	---	---	0	0	0.014758	0	0
RHBDL3	162494	broad.mit.edu	37	17	30615975	30615975	+	Silent	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr17:30615975C>T	uc002hhe.1	+	4	473	c.459C>T	c.(457-459)TAC>TAT	p.Y153Y	RHBDL3_uc010csw.1_Silent_p.Y145Y|RHBDL3_uc010csx.1_Silent_p.Y153Y|RHBDL3_uc010csy.1_Silent_p.Y55Y|RHBDL3_uc002hhf.1_Silent_p.Y55Y	NM_138328	NP_612201	P58872	RHBL3_HUMAN	rhomboid protease 3	153					proteolysis	integral to membrane	calcium ion binding|serine-type endopeptidase activity			ovary(1)	1		Breast(31;0.116)|Ovarian(249;0.182)				GCAAGTGGTACTATGACAGCT	0.622000													34	52	---	---	---	---	0	0	0.021022	0	0
MRPS23	51649	broad.mit.edu	37	17	55918341	55918341	+	Silent	SNP	C	G	G			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr17:55918341C>G	uc002ivc.2	-	4	394	c.366G>C	c.(364-366)GGG>GGC	p.G122G		NM_016070	NP_057154	Q9Y3D9	RT23_HUMAN	mitochondrial ribosomal protein S23	122					translation	intermediate filament cytoskeleton|mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome				0	Breast(9;8.75e-08)					ATAAAGCCTTCCCTGTTTCCA	0.373000													3	144	---	---	---	---	0	0	0.004672	0	0
DTNA	1837	broad.mit.edu	37	18	32374191	32374191	+	Silent	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr18:32374191C>T	uc010dmn.1	+	3	340	c.339C>T	c.(337-339)AAC>AAT	p.N113N	DTNA_uc002kxu.2_Silent_p.N113N|DTNA_uc010xbx.1_Silent_p.N113N|DTNA_uc002kxv.3_Silent_p.N113N|DTNA_uc002kxw.2_Silent_p.N113N|DTNA_uc002kxx.2_Silent_p.N113N|DTNA_uc010dmj.2_Silent_p.N113N|DTNA_uc002kxz.2_Silent_p.N113N|DTNA_uc002kxy.2_Silent_p.N113N|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Silent_p.N113N|DTNA_uc002kyb.3_Silent_p.N113N|DTNA_uc010dmm.2_Silent_p.N113N	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	113	Interaction with MAGEE1 (By similarity).				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						TCCTCCTTAACTTCCTGCTTG	0.473000													13	95	---	---	---	---	0	0	0.004990	0	0
PRKD3	23683	broad.mit.edu	37	2	37496767	37496767	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr2:37496767C>T	uc002rqd.2	-	12	2323	c.1768G>A	c.(1768-1770)GTT>ATT	p.V590I	PRKD3_uc002rqe.1_Missense_Mutation_p.V190I|PRKD3_uc002rqf.1_Missense_Mutation_p.V590I	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	590	ATP (By similarity).|Protein kinase.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				CCTCCATAAACGATGCCAAAC	0.368000													3	56	---	---	---	---	0	0	0.014758	0	0
CDS2	8760	broad.mit.edu	37	20	5169753	5169753	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr20:5169753C>T	uc002wls.2	+	11	1279	c.1022C>T	c.(1021-1023)GCT>GTT	p.A341V	CDS2_uc010zqt.1_RNA|CDS2_uc002wlu.2_Missense_Mutation_p.L293F|CDS2_uc010zqu.1_Missense_Mutation_p.A221V|CDS2_uc002wlv.2_Missense_Mutation_p.A243V|CDS2_uc010zqv.1_Missense_Mutation_p.A111V	NM_003818	NP_003809	O95674	CDS2_HUMAN	phosphatidate cytidylyltransferase 2	341	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane|mitochondrial inner membrane	phosphatidate cytidylyltransferase activity				0						CACAGCATCGCTCTCTCCACC	0.433000													46	75	---	---	---	---	0	0	0.014410	0	0
DSCAM	1826	broad.mit.edu	37	21	41648055	41648055	+	Silent	SNP	G	A	A			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr21:41648055G>A	uc002yyq.1	-	11	2777	c.2325C>T	c.(2323-2325)GAC>GAT	p.D775D	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	775	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ACTTGCTGACGTCTGCGCCCA	0.468000													5	92	---	---	---	---	0	0	0.001168	0	0
GOLGA4	2803	broad.mit.edu	37	3	37323489	37323489	+	Missense_Mutation	SNP	G	A	A	rs7612972		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr3:37323489G>A	uc003cgv.2	+	3	507	c.203G>A	c.(202-204)CGG>CAG	p.R68Q	GOLGA4_uc010hgr.1_Intron|GOLGA4_uc003cgw.2_Missense_Mutation_p.R90Q|GOLGA4_uc010hgs.2_Missense_Mutation_p.R68Q|GOLGA4_uc003cgx.2_5'Flank|GOLGA4_uc003cgu.1_Missense_Mutation_p.R90Q	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	68					Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						CTCCAGCTCCGGGTGCCCTCC	0.443000													3	92	---	---	---	---	0	0	0.009096	0	0
LAMP3	27074	broad.mit.edu	37	3	182841901	182841901	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr3:182841901T>A	uc003flh.3	-	6	1443	c.1219A>T	c.(1219-1221)AGG>TGG	p.R407W		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	407	Cytoplasmic (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			GATTGACACCTTAGGCGGATT	0.458000													5	145	---	---	---	---	0	0	0.001168	0	0
FRYL	285527	broad.mit.edu	37	4	48501632	48501632	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr4:48501632A>G	uc003gyh.1	-	64	9454	c.8849T>C	c.(8848-8850)ATA>ACA	p.I2950T	FRYL_uc003gye.1_Missense_Mutation_p.I132T|FRYL_uc003gyf.1_Missense_Mutation_p.I340T|FRYL_uc003gyg.1_Missense_Mutation_p.I1640T	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	2950					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						ATGGAAATATATATGTAACAG	0.418000													4	98	---	---	---	---	0	0	0.009096	0	0
MRPS30	10884	broad.mit.edu	37	5	44809124	44809124	+	Silent	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr5:44809124C>T	uc003joh.2	+	1	98	c.60C>T	c.(58-60)ACC>ACT	p.T20T	MRPS30_uc003joi.1_5'Flank	NM_016640	NP_057724	Q9NP92	RT30_HUMAN	mitochondrial ribosomal protein S30	20					apoptosis|translation	mitochondrion|ribosome	structural constituent of ribosome				0	Lung NSC(6;8.08e-07)					CATTGCACACCGCGGCTAATG	0.647000													8	9	---	---	---	---	0	0	0.003080	0	0
NAIP	4671	broad.mit.edu	37	5	70308276	70308276	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr5:70308276T>C	uc003kar.1	-	4	1185	c.467A>G	c.(466-468)TAC>TGC	p.Y156C	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Missense_Mutation_p.Y156C|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	156					anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		CTCTTCTTGGTACCTCATTTT	0.468000													3	124	---	---	---	---	0	0	0.004672	0	0
OR2J2	26707	broad.mit.edu	37	6	29141930	29141930	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr6:29141930G>A	uc011dlm.1	+	1	620	c.518G>A	c.(517-519)CGC>CAC	p.R173H		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTGGACATCGCCTAGTGGAT	0.468000													44	171	---	---	---	---	0	0	0.014410	0	0
BAI3	577	broad.mit.edu	37	6	70034893	70034893	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr6:70034893C>T	uc003pev.3	+	21	3392	c.2944C>T	c.(2944-2946)CGC>TGC	p.R982C	BAI3_uc010kak.2_Missense_Mutation_p.R982C|BAI3_uc011dxx.1_Missense_Mutation_p.R188C|BAI3_uc003pex.1_Missense_Mutation_p.R112C	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	982	Helical; Name=4; (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TATAAGAAAACGCTTTTTGTG	0.403000													12	134	---	---	---	---	0	0	0.020292	0	0
INHBA	3624	broad.mit.edu	37	7	41739665	41739665	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr7:41739665A>G	uc003thq.2	-	1	543	c.308T>C	c.(307-309)ATA>ACA	p.I103T	LOC285954_uc003tht.3_Intron|INHBA_uc003thr.2_Missense_Mutation_p.I103T|LOC285954_uc003ths.2_Intron	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	103					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						GTCATCCTCTATCTCCACATA	0.542000										TSP Lung(11;0.080)			6	535	---	---	---	---	0	0	0.001984	0	0
ENPP2	5168	broad.mit.edu	37	8	120606083	120606083	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr8:120606083C>G	uc003yot.1	-	12	1076	c.990G>C	c.(988-990)AGG>AGC	p.R330S	ENPP2_uc003yor.1_5'Flank|ENPP2_uc003yos.1_Missense_Mutation_p.R382S|ENPP2_uc010mdd.1_Missense_Mutation_p.R330S	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	330					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			TGTCGATTTCCCTCAGAGGAT	0.423000													11	335	---	---	---	---	0	0	0.008291	0	0
GAS1	2619	broad.mit.edu	37	9	89560958	89560958	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr9:89560958G>C	uc004aox.3	-	1	1147	c.737C>G	c.(736-738)GCC>GGC	p.A246G	uc004aoy.2_5'Flank	NM_002048	NP_002039	P54826	GAS1_HUMAN	growth arrest-specific 1 precursor	246					cell cycle arrest|negative regulation of S phase of mitotic cell cycle	anchored to plasma membrane					0						GCCCAGCTCGGCGCCGAAGCA	0.701000													4	28	---	---	---	---	0	0	0.001984	0	0
RPL12	6136	broad.mit.edu	37	9	130213590	130213590	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr9:130213590G>A	uc004bqy.1	-	1	95	c.7C>T	c.(7-9)CCG>TCG	p.P3S	RPL12_uc004bqx.1_5'Flank|RPL12_uc004bqz.1_Missense_Mutation_p.P3S|SNORA65_uc004bra.1_5'Flank|LRSAM1_uc004brb.1_5'Flank|LRSAM1_uc010mxk.1_5'Flank|LRSAM1_uc004brc.1_5'Flank|LRSAM1_uc004brd.1_5'Flank	NM_000976	NP_000967	P30050	RL12_HUMAN	ribosomal protein L12	3					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome				0						TCGAACTTCGGCGGCATGGTG	0.657000													6	67	---	---	---	---	0	0	0.003080	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070969	141070969	+	Silent	SNP	A	G	G			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr9:141070969A>G	uc004com.2	+	4	633	c.372A>G	c.(370-372)GCA>GCG	p.A124A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TAGAAAACGCAGATGAGACCT	0.517000													4	58	---	---	---	---	0	0	0.009096	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407736	1407736	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chrX:1407736C>T	uc010nct.2	+	7	750	c.428C>T	c.(427-429)ACG>ATG	p.T143M	CSF2RA_uc011mhb.1_Missense_Mutation_p.T143M|CSF2RA_uc004cpq.2_Missense_Mutation_p.T143M|CSF2RA_uc004cpn.2_Missense_Mutation_p.T143M|CSF2RA_uc004cpo.2_Missense_Mutation_p.T143M|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.T10M|CSF2RA_uc004cpp.2_Missense_Mutation_p.T143M|CSF2RA_uc010ncv.2_Missense_Mutation_p.T143M|CSF2RA_uc004cpr.2_Missense_Mutation_p.T143M	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	143	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AGGGGTCCGACGGCCCCCCGT	0.473000													11	142	---	---	---	---	0	0	0.010729	0	0
PRPS2	5634	broad.mit.edu	37	X	12837725	12837725	+	Silent	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chrX:12837725C>T	uc004cvb.2	+	5	754	c.630C>T	c.(628-630)GAC>GAT	p.D210D	PRPS2_uc004cva.2_Silent_p.D213D|PRPS2_uc010nec.2_Intron	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	210					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						TGGTGGGCGACGTGAAGGACC	0.552000													97	230	---	---	---	---	0	0	0.014410	0	0
IDS	3423	broad.mit.edu	37	X	148577943	148577943	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chrX:148577943C>G	uc011mxe.1	-	6	1011	c.813G>C	c.(811-813)AGG>AGC	p.R271S	IDS_uc011mxf.1_Missense_Mutation_p.R181S|IDS_uc011mxg.1_Missense_Mutation_p.R60S|IDS_uc010nsu.1_Intron|IDS_uc004fcw.3_Missense_Mutation_p.R60S|IDS_uc011mxh.1_Missense_Mutation_p.R271S|IDS_uc011mxi.1_RNA	NM_000202	NP_000193	P22304	IDS_HUMAN	iduronate-2-sulfatase isoform a precursor	271						lysosome	iduronate-2-sulfatase activity|metal ion binding				0	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					CTTCCCGTTGCCTGATGTCCA	0.532000													8	204	---	---	---	---	0	0	0.003080	0	0
CNGA2	1260	broad.mit.edu	37	X	150911807	150911807	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chrX:150911807C>T	uc004fey.1	+	7	1056	c.832C>T	c.(832-834)CTT>TTT	p.L278F		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	278	Helical; Name=H4; (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CATCAGCAACCTTGTCCTCTA	0.512000													4	222	---	---	---	---	0	0	0.009096	0	0
MST1P2	11209	broad.mit.edu	37	1	16974141	16974141	+	RNA	DEL	G	-	-			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr1:16974141delG	uc009vow.2	+	5		c.951delG			CROCCL1_uc001azg.1_5'Flank|CROCCL1_uc001azi.1_5'Flank|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						TGGCTTGGCCGGGGAGGTCAG	0.667													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484633	121484633	+	IGR	DEL	T	-	-	rs4898120		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr1:121484633delT								LOC647121 (170947 upstream) : None (None downstream)																							agagtttaacttttcttttca	0.000													9	1218	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484720	121484721	+	IGR	INS	-	G	G	rs2200142		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr1:121484720_121484721insG								LOC647121 (171034 upstream) : None (None downstream)																							tctttggaaacggttttttctc	0.000													10	555	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121485403	121485403	+	IGR	DEL	A	-	-	rs59226026		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr1:121485403delA								LOC647121 (171717 upstream) : None (None downstream)																							tggaaacgggatttcttcata	0.005													11	1458	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42383711	42383712	+	IGR	INS	-	C	C			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr10:42383711_42383712insC								None (None upstream) : LOC441666 (443603 downstream)																							tcaaatggaatcaaaataacca	0.000													7	19	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400455	42400456	+	IGR	INS	-	G	G	rs71264011		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr10:42400455_42400456insG								None (None upstream) : LOC441666 (426859 downstream)																							cttctttgtgttgtgtgtattc	0.000													11	408	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42596908	42596910	+	IGR	DEL	TCA	-	-	rs74210869		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr10:42596908_42596910delTCA								None (None upstream) : LOC441666 (230405 downstream)																							ggaatcatcttcaaatggaaagg	0.000													7	684	---	---	---	---					
PAWR	5074	broad.mit.edu	37	12	80083954	80083954	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr12:80083954delT	uc001syx.2	-	2	357	c.71delA	c.(70-72)AAGfs	p.K24fs		NM_002583	NP_002574	Q96IZ0	PAWR_HUMAN	PRKC, apoptosis, WT1, regulator	24					actin filament bundle assembly|apoptosis|induction of apoptosis|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	actin binding|enzyme binding|leucine zipper domain binding|transcription corepressor activity				0						GCGTTTCGCCTTCCACTCCTC	0.612													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732326	27732329	+	IGR	DEL	TGTT	-	-	rs74211006		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr19:27732326_27732329delTGTT								None (None upstream) : LOC148189 (549073 downstream)																							ggaaacactctgtttgtaaaatct	0.000													9	103	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	767654	767657	+	IGR	DEL	AGAA	-	-	rs72246159		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr5:767654_767657delAGAA								TPPP (74144 upstream) : ZDHHC11 (28063 downstream)																							GAGGAAGAGGAGAAAGAGAGCATC	0.588													8	13	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	26055865	26055866	+	IGR	INS	-	TC	TC	rs144566523	by1000genomes	TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr6:26055865_26055866insTC								HIST1H3C (9769 upstream) : HIST1H1C (103 downstream)																							CACCCAATTCGTCTGATACCTC	0.465													6	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61969534	61969534	+	IGR	DEL	A	-	-	rs56839084		TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr7:61969534delA								None (None upstream) : LOC643955 (782138 downstream)																							taataaccagacagaatcatt	0.000													22	867	---	---	---	---					
PRDM12	59335	broad.mit.edu	37	9	133543701	133543702	+	Splice_Site	DEL	GT	-	-			TCGA-EM-A3AL-01A-11D-A202-08	TCGA-EM-A3AL-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	248fd0ed-f14c-40b8-9f14-e9c7adf16e22	876b9a95-f58f-427b-bfd1-6919adda895d	g.chr9:133543701_133543702delGT	uc004bzt.1	+	3	630	c.570_splice	c.e3+1	p.E190_splice		NM_021619	NP_067632	Q9H4Q4	PRD12_HUMAN	PR domain containing 12						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		GGCCATTGAGGTGTGTGTGTGT	0.594													7	85	---	---	---	---					
