Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PALMD	54873	broad.mit.edu	37	1	100152261	100152261	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr1:100152261A>G	uc001dsg.2	+	4	724	c.281A>G	c.(280-282)AAA>AGA	p.K94R	PALMD_uc001dsf.2_Missense_Mutation_p.K94R	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	94	Potential.				regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		GATCTTGAAAAAGCTGAACTG	0.368000													8	30	---	---	---	---	0	0	0.069234	0	0
TCHH	7062	broad.mit.edu	37	1	152082320	152082320	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr1:152082320T>C	uc001ezp.2	-	2	3373	c.3373A>G	c.(3373-3375)AGA>GGA	p.R1125G	TCHH_uc009wne.1_Missense_Mutation_p.R1125G	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1125	4-8.|10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			cgttcctctctcagcagctgc	0.224000													3	108	---	---	---	---	0	0	0.115264	0	0
VN1R5	317705	broad.mit.edu	37	1	247420154	247420154	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr1:247420154G>C	uc010pyu.1	+	2	781	c.781G>C	c.(781-783)GTC>CTC	p.V261L		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	261	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			CTGTCCCCGAGTCTCACCAGT	0.468000													4	60	---	---	---	---	0	0	0.009096	0	0
ADARB2	105	broad.mit.edu	37	10	1229245	1229245	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr10:1229245G>A	uc009xhq.2	-	10	2482	c.2108C>T	c.(2107-2109)GCG>GTG	p.A703V	uc001igj.1_5'Flank|ADARB2_uc009xhp.2_Missense_Mutation_p.A87V|ADARB2_uc001igl.3_Missense_Mutation_p.A65V|ADARB2_uc001igm.3_Missense_Mutation_p.A212V	NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	703	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		GTAGGTGTGCGCCCCCAGCTT	0.592000													5	35	---	---	---	---	0	0	0.021553	0	0
FRMD4A	55691	broad.mit.edu	37	10	13708265	13708265	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr10:13708265C>T	uc001ims.2	-	18	1787	c.1435G>A	c.(1435-1437)GCC>ACC	p.A479T	FRMD4A_uc009xjf.1_Missense_Mutation_p.A479T|FRMD4A_uc001imt.1_Missense_Mutation_p.A512T	NM_018027	NP_060497	Q9P2Q2	FRM4A_HUMAN	FERM domain containing 4A	479						cytoplasm|cytoskeleton	binding			ovary(1)|skin(1)|pancreas(1)	3						AGGCGGCGGGCGGCCTCCGTA	0.527000													13	31	---	---	---	---	0	0	0.043863	0	0
KRTAP5-7	440050	broad.mit.edu	37	11	71238544	71238544	+	Silent	SNP	C	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr11:71238544C>T	uc001oqq.1	+	1	232	c.198C>T	c.(196-198)GGC>GGT	p.G66G		NM_001012503	NP_001012521	Q6L8G8	KRA57_HUMAN	keratin associated protein 5-7	66	7 X 4 AA repeats of C-C-X-P.					keratin filament					0						CCAAGGGAGGCTGTGGCTCCT	0.572000													8	352	---	---	---	---	0	0	0.069234	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130339245	130339245	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr11:130339245C>G	uc010scd.1	+	5	1631	c.1631C>G	c.(1630-1632)ACC>AGC	p.T544S		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	544	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		AGGCAGTGCACCAACCCCACC	0.642000													7	52	---	---	---	---	0	0	0.047766	0	0
LOC642846	642846	broad.mit.edu	37	12	9447432	9447432	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr12:9447432C>G	uc010sgq.1	+	5	513	c.422C>G	c.(421-423)ACA>AGA	p.T141R	LOC642846_uc010sgp.1_RNA|LOC642846_uc009zgn.1_5'UTR|LOC642846_uc001qvo.2_5'UTR					SubName: Full=cDNA FLJ60032, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-);												0						GAAGAAGAAACAGAGAATCTC	0.632000													3	13	---	---	---	---	0	0	0.021553	0	0
POTEG	404785	broad.mit.edu	37	14	19553531	19553531	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr14:19553531G>A	uc001vuz.1	+	1	167	c.115G>A	c.(115-117)GGC>AGC	p.G39S	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	39										ovary(1)	1						CAGGGGGAGCGGCAAGAGCAA	0.592000													9	311	---	---	---	---	0	0	0.069234	0	0
LTBP2	4053	broad.mit.edu	37	14	74971835	74971835	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr14:74971835G>A	uc001xqa.2	-	29	4607	c.4220C>T	c.(4219-4221)GCC>GTC	p.A1407V		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1407					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GCGGGTGGGGGCCGGGGCATG	0.622000													4	66	---	---	---	---	0	0	0.014758	0	0
SERPINA12	145264	broad.mit.edu	37	14	94964650	94964650	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr14:94964650T>A	uc001ydj.2	-	3	881	c.85A>T	c.(85-87)AAT>TAT	p.N29Y		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	29					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		GCTTTATAATTCCTTGGTGAG	0.473000													4	87	---	---	---	---	0	0	0.009096	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr16:32890622T>G	uc002edh.1	-	5	440	c.264A>C	c.(262-264)AAA>AAC	p.K88N	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CGTTGGTGTTTTTGTAGACCA	0.512000													3	50	---	---	---	---	0	0	0.047766	0	0
CHD3	1107	broad.mit.edu	37	17	7797853	7797853	+	Missense_Mutation	SNP	G	A	A	rs144356754		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr17:7797853G>A	uc002gje.2	+	8	1346	c.1196G>A	c.(1195-1197)CGT>CAT	p.R399H	CHD3_uc002gjd.2_Missense_Mutation_p.R458H|CHD3_uc002gjf.2_Missense_Mutation_p.R399H|CHD3_uc002gjg.1_Missense_Mutation_p.R227H	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	399	PHD-type 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				ACCTGCCCTCGTGCCTACCAC	0.577000													7	184	---	---	---	---	0	0	0.058154	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887461	9887461	+	Missense_Mutation	SNP	A	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr18:9887461A>C	uc002koi.3	+	2	1434	c.985A>C	c.(985-987)ATC>CTC	p.I329L	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.I262L	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	329	15.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GGAGGGTGACATCCCCAAGTC	0.592000													6	84	---	---	---	---	0	0	0.029380	0	0
MAPK4	5596	broad.mit.edu	37	18	48190438	48190438	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr18:48190438C>T	uc002lev.2	+	2	1110	c.110C>T	c.(109-111)GCC>GTC	p.A37V	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Missense_Mutation_p.A37V	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	37	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		GTGCTGTCGGCCGTGGACAGC	0.597000													8	118	---	---	---	---	0	0	0.058154	0	0
ZNF136	7695	broad.mit.edu	37	19	12297911	12297911	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr19:12297911C>T	uc002mti.2	+	4	818	c.718C>T	c.(718-720)CGA>TGA	p.R240*	ZNF136_uc010xmh.1_Nonsense_Mutation_p.R174*	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	240	C2H2-type 4.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						CACAAGTGTTCGAAGACACAT	0.393000													28	35	---	---	---	---	0	0	0.144211	0	0
ZNF443	10224	broad.mit.edu	37	19	12541141	12541141	+	Silent	SNP	C	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr19:12541141C>T	uc002mtu.2	-	4	2043	c.1845G>A	c.(1843-1845)CCG>CCA	p.P615P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	615					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TACATTCATACGGGTTCTCTC	0.403000													4	43	---	---	---	---	0	0	0.009096	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612000													3	11	---	---	---	---	0	0	0.009096	0	0
COL4A3	1285	broad.mit.edu	37	2	228118353	228118353	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr2:228118353C>T	uc002vom.1	+	13	926	c.764C>T	c.(763-765)ACG>ATG	p.T255M	COL4A3_uc002von.1_Missense_Mutation_p.T255M|COL4A3_uc002voo.1_Missense_Mutation_p.T255M|COL4A3_uc002vop.1_Missense_Mutation_p.T255M|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	255	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GATAACAGAACGGTAACTCTG	0.468000													4	142	---	---	---	---	0	0	0.009096	0	0
FRG1B	284802	broad.mit.edu	37	20	29625895	29625895	+	Missense_Mutation	SNP	G	A	A	rs76435412	by1000genomes	TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr20:29625895G>A	uc010ztl.1	+	2	81	c.49G>A	c.(49-51)GGA>AGA	p.G17R	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATCTGGCTATGGAAAATATCT	0.343000													3	39	---	---	---	---	0	0	0.115264	0	0
ZNF341	84905	broad.mit.edu	37	20	32336877	32336877	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr20:32336877A>G	uc002wzy.2	+	4	508	c.488A>G	c.(487-489)CAG>CGG	p.Q163R	ZNF341_uc002wzx.2_Missense_Mutation_p.Q163R|ZNF341_uc010geq.2_Missense_Mutation_p.Q73R|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	163	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CCACCTGTGCAGGTAAGAAGG	0.557000													3	66	---	---	---	---	0	0	0.021553	0	0
NBEAL2	23218	broad.mit.edu	37	3	47042545	47042545	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr3:47042545A>G	uc003cqp.2	+	28	4539	c.4360A>G	c.(4360-4362)ACG>GCG	p.T1454A	NBEAL2_uc010hjm.1_Missense_Mutation_p.T831A|NBEAL2_uc010hjn.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1454							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		GTTCTCGGTGACGTGGCGTGG	0.632000													3	49	---	---	---	---	0	0	0.115264	0	0
SLC15A2	6565	broad.mit.edu	37	3	121616260	121616260	+	Silent	SNP	T	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr3:121616260T>C	uc003eep.2	+	3	372	c.219T>C	c.(217-219)TAT>TAC	p.Y73Y	SLC15A2_uc011bjn.1_Silent_p.Y73Y	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	73	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	ATTTCCTGTATTTCCTGCACT	0.433000													57	67	---	---	---	---	0	0	0.139131	0	0
ZNF148	7707	broad.mit.edu	37	3	124952243	124952243	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr3:124952243C>G	uc003ehx.3	-	9	1813	c.1327G>C	c.(1327-1329)GAC>CAC	p.D443H	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.D443H|ZNF148_uc010hsa.2_Missense_Mutation_p.D443H|ZNF148_uc003eia.3_Missense_Mutation_p.D443H|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	443					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						TGATCAATGTCAGCATTGCCT	0.393000													3	67	---	---	---	---	0	0	0.009096	0	0
C7	730	broad.mit.edu	37	5	40937653	40937653	+	Splice_Site	SNP	G	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr5:40937653G>T	uc003jmh.2	+	6	543	c.429_splice	c.e6-1	p.G143_splice	C7_uc011cpn.1_Splice_Site	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor						complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CCTTTTAACAGTTACAATGAA	0.378000													8	14	---	---	---	---	0.00829132	0.00848414	0.069234	1	0
TMEM181	57583	broad.mit.edu	37	6	158957887	158957887	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr6:158957887C>T	uc003qrm.3	+	1	420	c.409C>T	c.(409-411)CGC>TGC	p.R137C	TMEM181_uc010kjr.1_Silent_p.T2T	NM_020823	NP_065874	Q9P2C4	TM181_HUMAN	G protein-coupled receptor 178	137					pathogenesis	integral to membrane	toxin binding			ovary(2)|central_nervous_system(1)	3		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;8.15e-18)|BRCA - Breast invasive adenocarcinoma(81;1.38e-05)		CAAGGATGACCGCTACTACAG	0.592000													5	39	---	---	---	---	0	0	0.021553	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	45	---	---	---	---	0	0	0.144211	0	0
NUP214	8021	broad.mit.edu	37	9	134004831	134004831	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr9:134004831G>A	uc004cag.2	+	4	670	c.559G>A	c.(559-561)GCA>ACA	p.A187T	NUP214_uc004cah.2_Missense_Mutation_p.A187T|NUP214_uc004caf.1_Missense_Mutation_p.A187T	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	187					carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		GAAAGTATGTGCAACTCTTCC	0.448000			T	DEK|SET|ABL1	AML|T-ALL								15	176	---	---	---	---	0	0	0.049695	0	0
Unknown	0	broad.mit.edu	37	MT	7902	7902	+	RNA	SNP	G	A	A			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrM:7902G>A	uc004cou.3	+	1		c.317G>A			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		CCAATGGTACTGAACCTACGA	0.507000													5	264	---	---	---	---	0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	MT	8053	8053	+	RNA	SNP	A	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrM:8053A>C	uc004cou.3	+	1		c.468A>C			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		ATAATTACATCACAAGACGTC	0.483000													4	186	---	---	---	---	0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	MT	9185	9185	+	RNA	SNP	T	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrM:9185T>C	uc011mfi.1	+	1		c.523T>C			uc004cov.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		TCTAGTAAGCCTCTACCTGCA	0.458000													12	152	---	---	---	---	0	0	0.038395	0	0
Unknown	0	broad.mit.edu	37	MT	12538	12538	+	RNA	SNP	T	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrM:12538T>C	uc004cox.3	+	1		c.202T>C			uc004coy.2_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CGAACTGACACTGAGCCACAA	0.408000													30	142	---	---	---	---	0	0	0.104719	0	0
Unknown	0	broad.mit.edu	37	MT	13250	13250	+	RNA	SNP	C	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrM:13250C>T	uc004cox.3	+	1		c.914C>T			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CGTAGCCTTCTCCACTTCAAG	0.448000													6	180	---	---	---	---	0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	1	36592247	36592248	+	IGR	DEL	GT	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr1:36592247_36592248delGT								COL8A2 (26397 upstream) : TRAPPC3 (9927 downstream)																							gcgtgcctgggtgtgtgtgtgc	0.000													2	4	---	---	---	---					
LOC200030	200030	broad.mit.edu	37	1	148349431	148349432	+	5'Flank	INS	-	G	G	rs67020224		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr1:148349431_148349432insG	uc001eqf.2	-						LOC200030_uc001eqe.2_5'Flank|LOC200030_uc001eqg.2_5'Flank|NBPF14_uc009wkf.1_5'Flank|uc001erd.3_5'Flank|uc001erc.3_5'Flank|uc010paj.1_5'Flank|uc010pav.1_5'Flank|uc010paw.1_5'Flank	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672							cytoplasm					0						GGGCTGACACTGGGGGGCCAGA	0.559													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	91670639	91670641	+	IGR	DEL	CAG	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr10:91670639_91670641delCAG								KIF20B (135939 upstream) : HTR7 (829937 downstream)																							ttccacgtgtcagcagcagcagc	0.000													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	3483948	3483950	+	IGR	DEL	TGG	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr12:3483948_3483950delTGG								TSPAN9 (88219 upstream) : PRMT8 (6565 downstream)																							TCTTCTGGGTtggtggtggtggt	0.355													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	53274503	53274504	+	IGR	INS	-	GT	GT	rs139403174	by1000genomes	TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr12:53274503_53274504insGT								KRT78 (31725 upstream) : KRT8 (16467 downstream)																							cacccccgggcgtgtgtgtgtg	0.005													2	4	---	---	---	---					
NCOR2	9612	broad.mit.edu	37	12	124848228	124848228	+	Frame_Shift_Del	DEL	G	-	-	rs12321697		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr12:124848228delG	uc010tba.1	-	21	3042	c.2925delC	c.(2923-2925)CCCfs	p.P975fs	NCOR2_uc010tay.1_Frame_Shift_Del_p.P975fs|NCOR2_uc010taz.1_Frame_Shift_Del_p.P958fs|NCOR2_uc010tbb.1_Frame_Shift_Del_p.P975fs|NCOR2_uc010tbc.1_Frame_Shift_Del_p.P957fs|NCOR2_uc001ugj.1_Frame_Shift_Del_p.P975fs	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	975					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CACTCACGATGGGGGGGATGG	0.652													7	364	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	37352831	37352832	+	IGR	INS	-	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr13:37352831_37352832insC								C13orf36 (80858 upstream) : RFXAP (40507 downstream)																							acatccctcatccccaacccca	0.000													3	3	---	---	---	---					
TSC22D1	8848	broad.mit.edu	37	13	45148691	45148693	+	In_Frame_Del	DEL	TGT	-	-	rs148625973		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr13:45148691_45148693delTGT	uc001uzn.3	-	1	2009_2011	c.1518_1520delACA	c.(1516-1521)CAACAG>CAG	p.506_507QQ>Q	TSC22D1_uc001uzo.1_In_Frame_Del_p.506_507QQ>Q	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	506_507	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		TGgttgttgctgttgttgttgtt	0.404													7	143	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	114921773	114921774	+	IGR	INS	-	T	T			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr13:114921773_114921774insT								RASA3 (23678 upstream) : CDC16 (78588 downstream)																							tgctgggcgtgggggtggaggg	0.010													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	5288569	5288569	+	5'Flank	DEL	T	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr16:5288569delT	uc002cyq.1	+											Homo sapiens cDNA clone IMAGE:5244947, **** WARNING: chimeric clone ****.																		CAGCCTCTCCTGCCTCCACTG	0.637													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	19326181	19326182	+	IGR	DEL	AG	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr16:19326181_19326182delAG								LOC728276 (10465 upstream) : TMC5 (95679 downstream)																							AACCCCAGGCAGAGAGAGAgag	0.059													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46396324	46396326	+	IGR	DEL	GAG	-	-	rs139173778		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr16:46396324_46396326delGAG								None (None upstream) : ANKRD26P1 (106923 downstream)																							tccattcgatgaggattccattc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46434532	46434533	+	IGR	INS	-	TTG	TTG			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr16:46434532_46434533insTTG								None (None upstream) : ANKRD26P1 (68716 downstream)																							tgcaatcatcaaatggaatcga	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	54370845	54370845	+	IGR	DEL	A	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr16:54370845delA								IRX3 (50467 upstream) : IRX5 (594266 downstream)																							ggaggaagagaaggcagagga	0.174													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	1613182	1613183	+	IGR	INS	-	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr17:1613182_1613183insG								PRPF8 (25006 upstream) : C17orf91 (1621 downstream)																							AGTGACAGGCTGGGGGCATGGG	0.693													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	6464989	6464990	+	IGR	INS	-	TCC	TCC	rs143884751	by1000genomes	TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr17:6464989_6464990insTCC								PITPNM3 (5112 upstream) : KIAA0753 (16656 downstream)																							ccccctcctcttcctcctctcc	0.000													6	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	75832681	75832683	+	IGR	DEL	TGC	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr17:75832681_75832683delTGC								SEPT9 (336005 upstream) : FLJ45079 (42426 downstream)																							AGTAAGGTCTtgctgctgctgct	0.365													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	76474321	76474323	+	IGR	DEL	CAT	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr17:76474321_76474323delCAT								DNAH17 (5465 upstream) : CYTH1 (195808 downstream)																							ccatcaccaccatcatcaccacc	0.000													5	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	2089465	2089466	+	IGR	DEL	CA	-	-	rs150342638	by1000genomes	TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr18:2089465_2089466delCA								C18orf2 (682284 upstream) : METTL4 (448059 downstream)																							ACTGCCCCCCCACCCACTCACC	0.134													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	91769732	91769733	+	IGR	INS	-	AATC	AATC	rs113868867		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr2:91769732_91769733insAATC								None (None upstream) : LOC654342 (35459 downstream)																							AGGCAGTGATGAATCAGACAGT	0.554													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	122067665	122067666	+	IGR	DEL	GT	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr2:122067665_122067666delGT								TFCP2L1 (24887 upstream) : CLASP1 (27688 downstream)																							CCACATGAACgtgtgtgtgtgt	0.401													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	37282015	37282017	+	IGR	DEL	TGG	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr20:37282015_37282017delTGG								ADIG (64911 upstream) : SLC32A1 (71088 downstream)																							gtggtgatgatggtggtggtggt	0.069													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	43953772	43953772	+	IGR	DEL	T	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr20:43953772delT								RBPJL (7310 upstream) : SDC4 (159 downstream)																							TCCTGCCTTCTTACCTCTCTG	0.537													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10716663	10716663	+	IGR	DEL	C	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr21:10716663delC								None (None upstream) : TPTE (190080 downstream)																							gcagattctacaaaaagagtg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16291991	16291992	+	IGR	INS	-	GTGC	GTGC			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr22:16291991_16291992insGTGC								POTEH (4054 upstream) : OR11H1 (156834 downstream)																							TGAGTGTCAgtgtgtgtgtgcg	0.490													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16436529	16436529	+	IGR	DEL	G	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr22:16436529delG								POTEH (148592 upstream) : OR11H1 (12297 downstream)																							CTGGAATCCTGGGGGAAAAAA	0.413													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	180777990	180777991	+	IGR	INS	-	G	G			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr3:180777990_180777991insG								DNAJC19 (70460 upstream) : SOX2OT (503518 downstream)																							tgtgtgtgtgtgtggtggtggt	0.262													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	3628364	3628365	+	IGR	INS	-	C	C	rs144368206	by1000genomes	TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr4:3628364_3628365insC								LRPAP1 (94140 upstream) : ADRA2C (139710 downstream)																							cctcagagccacgtgcttcctg	0.193													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49101270	49101270	+	IGR	DEL	T	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr4:49101270delT								CWH43 (37177 upstream) : None (None downstream)																							ttccattccattctatgctat	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	188810517	188810518	+	IGR	INS	-	AC	AC	rs5865070		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr4:188810517_188810518insAC								None (None upstream) : ZFP42 (106407 downstream)																							cacatagacatacacacacaca	0.262													3	3	---	---	---	---					
LARP1	23367	broad.mit.edu	37	5	154181822	154181822	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr5:154181822delG	uc003lvp.2	+	11	2401	c.1972delG	c.(1972-1974)GGGfs	p.G658fs	LARP1_uc003lvo.2_Frame_Shift_Del_p.G581fs|LARP1_uc010jie.1_Frame_Shift_Del_p.G453fs	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	658							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CCGGCACCCAGGGGGGGACCG	0.547													7	148	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	63903575	63903581	+	IGR	DEL	AAGGAGC	-	-	rs70996279		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr6:63903575_63903581delAAGGAGC								KHDRBS2 (907475 upstream) : LGSN (82276 downstream)																							GAGATTCCAGAAGGAGCAAGGAGCAGG	0.391													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	169300575	169300575	+	IGR	DEL	A	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr6:169300575delA								SMOC2 (231904 upstream) : THBS2 (315301 downstream)																							aagaggagggaagtaggggtg	0.284													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	1798236	1798238	+	IGR	DEL	GCT	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr7:1798236_1798238delGCT								ELFN1 (10646 upstream) : MAD1L1 (57190 downstream)																							gtggaggctggctggctgagggt	0.054													5	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	101391469	101391471	+	IGR	DEL	GAG	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr7:101391469_101391471delGAG								MYL10 (118893 upstream) : CUX1 (67821 downstream)																							GTCACaggaagaggaggaggagg	0.562													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	27578616	27578619	+	IGR	DEL	TCCC	-	-	rs187069		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr8:27578616_27578619delTCCC								SCARA3 (44330 upstream) : CCDC25 (12216 downstream)																							catccctccttccctccctccctc	0.152													2	4	---	---	---	---					
MAFA	389692	broad.mit.edu	37	8	144511954	144511956	+	In_Frame_Del	DEL	TGG	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr8:144511954_144511956delTGG	uc003yyc.1	-	1	621_623	c.621_623delCCA	c.(619-624)CACCAT>CAT	p.207_208HH>H		NM_201589	NP_963883	Q8NHW3	MAFA_HUMAN	v-maf musculoaponeurotic fibrosarcoma oncogene	207_208	His-rich.				insulin secretion|nitric oxide mediated signal transduction|response to glucose stimulus	nucleus	protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.237)			CGCGCCGCCAtggtggtggtggt	0.581										HNSCC(29;0.082)			2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	35962393	35962394	+	IGR	INS	-	C	C	rs143772338	by1000genomes	TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr9:35962393_35962394insC								OR2S2 (4242 upstream) : RECK (74516 downstream)																							ccccatccctgccccgccccat	0.450													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68419453	68419454	+	IGR	DEL	AA	-	-	rs62545511		TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chr9:68419453_68419454delAA								FAM27B (625264 upstream) : MIR1299 (582785 downstream)																							catacacaccaaacacacatac	0.000													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	3566	3566	+	RNA	DEL	C	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrM:3566delC	uc004cos.3	+	2		c.1859delC			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		TCTACTATGAACCCCCCTCCC	0.527													21	372	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	12384	12385	+	RNA	INS	-	C	C			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrM:12384_12385insC	uc004cox.3	+	1		c.48_49insC			uc004coy.2_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		ACTTCCCTAATTCCCCCCATCC	0.416													13	225	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	13133	13133	+	RNA	DEL	T	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrM:13133delT	uc004cox.3	+	1		c.797delT			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CTTCCACCCCCTAGCAGAAAA	0.502													51	323	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			5	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	61825080	61825080	+	IGR	DEL	T	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrX:61825080delT								None (None upstream) : SPIN4 (742028 downstream)																							tgaacattccttttgatagag	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	23596764	23596764	+	IGR	DEL	T	-	-			TCGA-EM-A3FM-01A-11D-A21A-08	TCGA-EM-A3FM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e4d74fbc-7d92-4064-857a-c7b106d04a79	1e044dad-bb75-489f-86ab-14bf179751c7	g.chrY:23596764delT								RBMY2EP (33316 upstream) : RBMY1A1 (76494 downstream)																							tttctttttctttttttttga	0.174													2	4	---	---	---	---					
