Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:13418G>A	uc001aaa.3	+	3		c.661G>A			uc010nxq.1_Missense_Mutation_p.E61K|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		CCACCACCCCGAGATCACATT	0.562													7	20					0	0	0.008291	0	0
DVL1	1855	broad.mit.edu	37	1	1273686	1273686	+	Silent	SNP	G	A	A	rs149343423	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:1273686G>A	uc001aer.3	-	13	1442	c.1395C>T	c.(1393-1395)TCC>TCT	p.S465S	DVL1_uc002quu.2_Silent_p.S207S|DVL1_uc009vka.2_Silent_p.S148S|DVL1_uc001aeu.1_Silent_p.S224S	NM_004421	NP_004412	O14640	DVL1_HUMAN	dishevelled 1	490	DEP.				canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		AGCACTGCTCGGAGAAGGTGA	0.672													15	22					0	0	0.007413	0	0
MIB2	142678	broad.mit.edu	37	1	1559297	1559297	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:1559297G>A	uc001agg.2	+	4	692	c.565G>A	c.(565-567)GAC>AAC	p.D189N	MIB2_uc001agh.2_Missense_Mutation_p.D175N|MIB2_uc001agi.2_Missense_Mutation_p.D189N|MIB2_uc001agj.2_Missense_Mutation_p.D30N|MIB2_uc001agk.2_Missense_Mutation_p.D189N|MIB2_uc001agl.1_Missense_Mutation_p.D145N|MIB2_uc001agm.2_Missense_Mutation_p.D131N|MIB2_uc010nyq.1_Missense_Mutation_p.D145N|MIB2_uc009vkh.2_Missense_Mutation_p.D30N|MIB2_uc001agn.2_5'Flank	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	189	ZZ-type.				Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CCACGCCTTCGACCGCTACGA	0.692													9	22					0	0	0.008291	0	0
NADK	65220	broad.mit.edu	37	1	1688705	1688705	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:1688705G>A	uc009vkw.2	-	4	429	c.308C>T	c.(307-309)TCC>TTC	p.S103F	NADK_uc001aic.2_Missense_Mutation_p.S103F|NADK_uc001aid.3_Missense_Mutation_p.S103F|NADK_uc001aie.2_Missense_Mutation_p.S207F|NADK_uc010nyv.1_Missense_Mutation_p.S71F|NADK_uc009vkx.1_5'UTR	NM_023018	NP_075394	O95544	NADK_HUMAN	NAD kinase	103					ATP metabolic process|NAD metabolic process|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|NAD+ kinase activity|protein binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;8.75e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.33e-23)|GBM - Glioblastoma multiforme(42;1.35e-07)|Colorectal(212;0.000203)|COAD - Colon adenocarcinoma(227;0.000225)|Kidney(185;0.00265)|STAD - Stomach adenocarcinoma(132;0.00655)|BRCA - Breast invasive adenocarcinoma(365;0.00855)|KIRC - Kidney renal clear cell carcinoma(229;0.0382)|Lung(427;0.207)		GCTCTTTGGGGACTTGTTCCA	0.587													44	107					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	1	1855243	1855243	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:1855243C>T	uc001aik.2	-	7	1208	c.358G>A	c.(358-360)GAC>AAC	p.D120N	uc001ail.2_Missense_Mutation_p.D120N					RecName: Full=Uncharacterized protein C1orf222;																		TGGAGCTTGTCGGAGAAGTAG	0.637													25	68					0	0	0.003954	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938863	2938863	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:2938863C>T	uc001ajz.2	+	1	818	c.613C>T	c.(613-615)CCC>TCC	p.P205S		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	205						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		CCACACCTTCCCCTGCCAGCT	0.642													14	54					0	0	0.002450	0	0
CHD5	26038	broad.mit.edu	37	1	6204202	6204202	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:6204202C>T	uc001amb.1	-	12	1916	c.1816G>A	c.(1816-1818)GGG>AGG	p.G606R	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	606	Chromo 2.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TGCACATCCCCCTTCTTGTCA	0.552													30	68					0	0	0.002096	0	0
RPL22	6146	broad.mit.edu	37	1	6253107	6253107	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:6253107A>G	uc001amd.2	-	3	171	c.125T>C	c.(124-126)TTT>TCT	p.F42S	RPL22_uc001ame.2_Missense_Mutation_p.F42S	NM_000983	NP_000974	P35268	RL22_HUMAN	ribosomal protein L22 proprotein	42					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	heparin binding|RNA binding|structural constituent of ribosome				0	Ovarian(185;0.0634)	all_cancers(23;2.78e-38)|all_epithelial(116;8.88e-22)|all_lung(118;7.95e-08)|Lung NSC(185;1.6e-06)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;4.53e-38)|GBM - Glioblastoma multiforme(13;3.33e-32)|OV - Ovarian serous cystadenocarcinoma(86;2.8e-19)|Colorectal(212;6.8e-08)|COAD - Colon adenocarcinoma(227;8.04e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00311)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		TTCTTGCAAAAACTGCTCCTG	0.423			T	RUNX1	AML|CML								17	52					0	0	0.006122	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6528392	6528392	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:6528392G>A	uc001ano.1	-	21	2773	c.2672C>T	c.(2671-2673)CCA>CTA	p.P891L	PLEKHG5_uc001ann.1_Missense_Mutation_p.P872L|PLEKHG5_uc001anq.1_Intron|PLEKHG5_uc001anp.1_Missense_Mutation_p.P912L|TNFRSF25_uc001ana.2_5'Flank|TNFRSF25_uc001anb.2_5'Flank|TNFRSF25_uc001anc.2_5'Flank|TNFRSF25_uc001and.2_5'Flank|TNFRSF25_uc009vlz.2_5'Flank|TNFRSF25_uc001ane.2_5'Flank|TNFRSF25_uc001anf.2_5'Flank|TNFRSF25_uc001ang.2_5'Flank|TNFRSF25_uc001anh.2_5'Flank|TNFRSF25_uc001ani.1_5'Flank|PLEKHG5_uc001anj.1_Missense_Mutation_p.P396L|PLEKHG5_uc009vma.1_Missense_Mutation_p.P675L|PLEKHG5_uc010nzr.1_Missense_Mutation_p.P904L|PLEKHG5_uc001ank.1_Missense_Mutation_p.P835L|PLEKHG5_uc009vmb.1_Missense_Mutation_p.P835L|PLEKHG5_uc001anl.1_Missense_Mutation_p.P835L|PLEKHG5_uc001anm.1_Missense_Mutation_p.P835L|PLEKHG5_uc001anr.1_Missense_Mutation_p.P98L	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	891					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CTCTGCCATTGGGCCTGGGGC	0.682													6	17					0	0	0.001168	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724061	7724061	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:7724061C>T	uc001aoi.2	+	9	1661	c.1454C>T	c.(1453-1455)CCC>CTC	p.P485L		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	485					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		AACTTTGACCCCGACTGTTTC	0.602													34	63					0	0	0.004289	0	0
CAMTA1	23261	broad.mit.edu	37	1	7725010	7725010	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:7725010G>A	uc001aoi.2	+	9	2610	c.2403G>A	c.(2401-2403)ACG>ACA	p.T801T		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	801					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GGGACAGCACGGCGCTCTCAC	0.652													94	179					0	0	0.003610	0	0
SLC45A1	50651	broad.mit.edu	37	1	8390856	8390856	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:8390856C>T	uc001apb.2	+	4	1303	c.1303C>T	c.(1303-1305)CTG>TTG	p.L435L	SLC45A1_uc001apc.2_Silent_p.L133L	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	435					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CGGGGACATTCTGAGGGTGGG	0.662													33	44					0	0	0.002836	0	0
C1orf200	644997	broad.mit.edu	37	1	9714387	9714387	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:9714387C>T	uc001aqc.3	-	1	258	c.108G>A	c.(106-108)CAG>CAA	p.Q36Q	PIK3CD_uc001aqa.2_Intron|PIK3CD_uc001aqb.3_Intron	NR_027045				RecName: Full=Putative uncharacterized protein C1orf200;												0	all_lung(157;0.222)	Renal(390;0.000469)|all_lung(118;0.000521)|Lung NSC(185;0.000744)|Colorectal(325;0.0062)|Breast(348;0.0157)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.86e-08)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(185;0.000231)|KIRC - Kidney renal clear cell carcinoma(229;0.000879)|BRCA - Breast invasive adenocarcinoma(304;0.00178)|STAD - Stomach adenocarcinoma(132;0.00331)|READ - Rectum adenocarcinoma(331;0.0419)		TTGCACTAAGCTGTGGGCTCC	0.582													14	66					0	0	0.002450	0	0
KIF1B	23095	broad.mit.edu	37	1	10352162	10352162	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:10352162G>A	uc001aqx.3	+	17	1774	c.1572G>A	c.(1570-1572)GGG>GGA	p.G524G	KIF1B_uc001aqv.3_Silent_p.G478G|KIF1B_uc001aqw.3_Silent_p.G478G|KIF1B_uc001aqy.2_Silent_p.G498G|KIF1B_uc001aqz.2_Silent_p.G524G|KIF1B_uc001ara.2_Silent_p.G484G|KIF1B_uc001arb.2_Silent_p.G510G	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	524					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GAACCCTAGGGGTTTTCTCAC	0.418													4	118					0	0	0.009096	0	0
PGD	5226	broad.mit.edu	37	1	10460543	10460543	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:10460543G>A	uc001arc.2	+	3	268	c.178G>A	c.(178-180)GAG>AAG	p.E60K	PGD_uc001ard.2_5'UTR|PGD_uc010oak.1_Missense_Mutation_p.E60K|PGD_uc010oal.1_Missense_Mutation_p.E47K	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	60					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		GTCCCTGAAAGAGATGGTCTC	0.512													35	56					0	0	0.003755	0	0
PTCHD2	57540	broad.mit.edu	37	1	11562817	11562817	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:11562817C>T	uc001ash.3	+	3	1317	c.1179C>T	c.(1177-1179)TCC>TCT	p.S393S	PTCHD2_uc001asi.1_Silent_p.S393S	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	393	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TGAAGAGCTCCCTCCTGCGCA	0.572													15	27					0	0	0.003163	0	0
CLCN6	1185	broad.mit.edu	37	1	11897408	11897408	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:11897408C>T	uc001ate.3	+	20	2260	c.2147C>T	c.(2146-2148)CCC>CTC	p.P716L	CLCN6_uc010oat.1_Missense_Mutation_p.P432L|CLCN6_uc010oau.1_Missense_Mutation_p.P694L|CLCN6_uc010oav.1_5'Flank|CLCN6_uc010oaw.1_5'Flank|CLCN6_uc010oax.1_5'Flank|CLCN6_uc010oay.1_5'Flank|CLCN6_uc010oaz.1_5'Flank|CLCN6_uc010oba.1_5'Flank	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	716	Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		AGATACACTCCCTACCCCAAC	0.582													36	78					0	0	0.009718	0	0
AADACL4	343066	broad.mit.edu	37	1	12704613	12704613	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:12704613C>T	uc001auf.2	+	1	48	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	16	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		CCATCTTTTTCCTGGGGGTCT	0.532													47	110					0	0	0.003610	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12837224	12837224	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:12837224C>T	uc001aui.2	+	3	961	c.934C>T	c.(934-936)CTC>TTC	p.L312F		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	312										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTGAAGCATCTCTCTTGGTG	0.557													51	105					0	0	0.003610	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887392	12887392	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:12887392G>A	uc001auk.2	-	3	661	c.465C>T	c.(463-465)ATC>ATT	p.I155I		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	155											0						GGATGCTTCTGATATTGCGGA	0.468													105	261					0	0	0.003610	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12939610	12939610	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:12939610C>T	uc001aun.2	-	4	1263	c.1192G>A	c.(1192-1194)GAG>AAG	p.E398K		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	398	LRR 6.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGCAGGTTCTCCAGGGTGGCC	0.542													92	209					0	0	0.003610	0	0
PDPN	10630	broad.mit.edu	37	1	13936921	13936921	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:13936921G>A	uc001avd.2	+	3	518	c.469G>A	c.(469-471)GAG>AAG	p.E157K	PDPN_uc001avc.2_Missense_Mutation_p.E157K|PDPN_uc009vob.2_Missense_Mutation_p.E39K|PDPN_uc009voc.2_Missense_Mutation_p.E39K|PDPN_uc001ave.2_Missense_Mutation_p.E39K|PDPN_uc001avf.2_Missense_Mutation_p.E39K	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	81	Extracellular (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		CATTCGCATCGAGGATCTGCC	0.463													19	71					0	0	0.008871	0	0
CTRC	11330	broad.mit.edu	37	1	15772186	15772186	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:15772186C>T	uc001awi.1	+	7	757	c.734C>T	c.(733-735)ACC>ATC	p.T245I	CTRC_uc001awj.1_Silent_p.H196H	NM_007272	NP_009203	Q99895	CTRC_HUMAN	chymotrypsin C preproprotein	245	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0		Breast(348;0.000207)|all_lung(284;0.00021)|Colorectal(325;0.000257)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)|Hepatocellular(190;0.0634)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGCTGCAACACCCGCAAGAAG	0.642													34	75					0	0	0.006999	0	0
CELA2B	51032	broad.mit.edu	37	1	15808812	15808812	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:15808812G>A	uc001awl.2	+	4	305	c.280G>A	c.(280-282)GAG>AAG	p.E94K		NM_015849	NP_056933	P08218	CEL2B_HUMAN	elastase 2B preproprotein	94	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						CTACGTTGCAGAGTCCGGCTC	0.592													28	56					0	0	0.005443	0	0
AGMAT	79814	broad.mit.edu	37	1	15909809	15909809	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:15909809G>A	uc001awv.1	-	2	497	c.354C>T	c.(352-354)TCC>TCT	p.S118S	DNAJC16_uc001awu.2_Intron	NM_024758	NP_079034	Q9BSE5	SPEB_HUMAN	agmatine ureohydrolase (agmatinase) precursor	118					putrescine biosynthetic process|spermidine biosynthetic process	mitochondrion	agmatinase activity|metal ion binding			skin(1)	1		Breast(348;0.000207)|Colorectal(325;0.000258)|Lung NSC(340;0.000359)|all_lung(284;0.000486)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.93e-07)|COAD - Colon adenocarcinoma(227;3.91e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000121)|KIRC - Kidney renal clear cell carcinoma(229;0.00257)|STAD - Stomach adenocarcinoma(313;0.00734)|READ - Rectum adenocarcinoma(331;0.0649)		CAACCATGAGGGACTGGAAGG	0.527													16	41					0	0	0.004990	0	0
MST1P2	11209	broad.mit.edu	37	1	16974277	16974277	+	RNA	SNP	A	C	C	rs151151026	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:16974277A>C	uc009vow.2	+	5		c.1087A>C			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Splice_Site|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Splice_Site|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Splice_Site|MST1P2_uc001azm.3_Splice_Site					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GGTCCATCTAAGGGTCCGAGG	0.657													4	47					0	0	0.000602	0	0
MST1P2	11209	broad.mit.edu	37	1	16976747	16976747	+	RNA	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:16976747A>G	uc010och.1	+	14		c.2468A>G			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTTGACGCCATATGCTTTGG	0.388													4	82					0	0	0.001984	0	0
PADI2	11240	broad.mit.edu	37	1	17431502	17431502	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:17431502C>T	uc001baf.2	-	2	229	c.147G>A	c.(145-147)TGG>TGA	p.W49*	PADI2_uc010ocm.1_Nonsense_Mutation_p.W49*|PADI2_uc001bag.1_Nonsense_Mutation_p.W49*	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	49					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	CCACCTCCACCCACACGTGTT	0.662													14	26					0	0	0.003163	0	0
PADI6	353238	broad.mit.edu	37	1	17698794	17698794	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:17698794C>T	uc001bak.1	+	1	54	c.54C>T	c.(52-54)TCC>TCT	p.S18S		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	10					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TCCACCTGTCCCTGGACAGCC	0.577													57	112					0	0	0.003610	0	0
IGSF21	84966	broad.mit.edu	37	1	18661444	18661444	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:18661444G>A	uc001bau.1	+	4	747	c.364G>A	c.(364-366)GAC>AAC	p.D122N		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	122	Ig-like 1.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		GGGCATCTACGACCGCGCCAC	0.622													15	30					0	0	0.003163	0	0
IGSF21	84966	broad.mit.edu	37	1	18691906	18691906	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:18691906G>A	uc001bau.1	+	6	1113	c.730G>A	c.(730-732)GAG>AAG	p.E244K	IGSF21_uc001bav.1_Missense_Mutation_p.E65K	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	244						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		ACCCTACACGGAGCGCCCCTC	0.637													30	80					0	0	0.009535	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181021	19181021	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:19181021C>T	uc001bba.1	-	3	944	c.943G>A	c.(943-945)GAG>AAG	p.E315K		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	315	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TGGCGCAGCTCCGTGAGGTTG	0.657													10	37					0	0	0.001368	0	0
UBR4	23352	broad.mit.edu	37	1	19479878	19479878	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:19479878G>A	uc001bbi.2	-	46	6753	c.6749C>T	c.(6748-6750)TCC>TTC	p.S2250F	UBR4_uc001bbk.1_5'Flank|UBR4_uc001bbl.1_Missense_Mutation_p.S187F|UBR4_uc001bbm.1_Missense_Mutation_p.S1462F	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	2250					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CAGCCAGTAGGAGGTGTTCTC	0.537													37	77					0	0	0.004878	0	0
SH2D5	400745	broad.mit.edu	37	1	21049398	21049398	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:21049398G>A	uc001bdt.1	-	8	1292	c.667C>T	c.(667-669)CTG>TTG	p.L223L	SH2D5_uc009vpy.1_Silent_p.L307L|SH2D5_uc001bdu.1_RNA	NM_001103160	NP_001096630	Q6ZV89	SH2D5_HUMAN	SH2 domain containing 5 isoform 2	223	SH2.										0		Colorectal(325;3.46e-05)|all_lung(284;5.32e-05)|Lung NSC(340;5.51e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000142)|GBM - Glioblastoma multiforme(114;0.000465)|Kidney(64;0.000476)|STAD - Stomach adenocarcinoma(196;0.00303)|KIRC - Kidney renal clear cell carcinoma(64;0.00634)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AACAGGGCCAGGGCACAGGGC	0.662													5	14					0	0	0.001984	0	0
CELA3A	10136	broad.mit.edu	37	1	22333383	22333383	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:22333383C>T	uc001bfl.2	+	5	394	c.375C>T	c.(373-375)GCC>GCT	p.A125A		NM_005747	NP_005738	P09093	CEL3A_HUMAN	elastase 3A, pancreatic preproprotein	125	Peptidase S1.				cholesterol metabolic process|digestion|proteolysis		serine-type endopeptidase activity			haematopoietic_and_lymphoid_tissue(1)	1						ATGACATCGCCCTCATCAAGC	0.622													24	63					0	0	0.005443	0	0
MYOM3	127294	broad.mit.edu	37	1	24432553	24432553	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:24432553G>A	uc001bin.3	-	5	580	c.417C>T	c.(415-417)GTC>GTT	p.V139V	MYOM3_uc001bio.2_Silent_p.V139V|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	139	Potential.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TGGCCTCCTGGACCTTCTCCT	0.637													10	21					0	0	0.000978	0	0
EXTL1	2134	broad.mit.edu	37	1	26361662	26361663	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:26361662_26361663GG>AA	uc001blf.2	+	11	2722_2723	c.1855_1856GG>AA	c.(1855-1857)GGG>AAG	p.G619K		NM_004455	NP_004446	Q92935	EXTL1_HUMAN	exostoses-like 1	619	Lumenal (Potential).				skeletal system development	integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|protein binding	p.G619G(1)		central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00594)|READ - Rectum adenocarcinoma(331;0.0649)		TTAGGCGCCTGGGGGCCCGGGG	0.624													38	60					0	0	0.004672	0	0
CD52	1043	broad.mit.edu	37	1	26644527	26644527	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:26644527C>T	uc001bmc.2	+	1	117	c.19C>T	c.(19-21)CTC>TTC	p.L7F	UBXN11_uc001bma.2_Intron|CD52_uc009vsg.1_RNA	NM_001803	NP_001794	P31358	CD52_HUMAN	CD52 antigen precursor	7					elevation of cytosolic calcium ion concentration|respiratory burst	anchored to membrane|integral to plasma membrane|membrane fraction					0		all_cancers(24;5.02e-24)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;7.56e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0137)|READ - Rectum adenocarcinoma(331;0.0649)	Alemtuzumab(DB00087)	CTTCCTCTTCCTCCTACTCAC	0.527													33	58					0	0	0.005524	0	0
FGR	2268	broad.mit.edu	37	1	27942117	27942117	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:27942117C>T	uc001boj.2	-	7	992	c.846G>A	c.(844-846)TGG>TGA	p.W282*	FGR_uc001boi.2_5'UTR|FGR_uc001bok.2_Nonsense_Mutation_p.W282*|FGR_uc001bol.2_Nonsense_Mutation_p.W282*|FGR_uc001bom.2_Nonsense_Mutation_p.W282*	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	282	Protein kinase.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TGCTGCCGTTCCACGTGCCTG	0.687													10	8					0	0	0.000978	0	0
EPB41	2035	broad.mit.edu	37	1	29342210	29342210	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:29342210C>T	uc001brm.1	+	5	843	c.836C>T	c.(835-837)CCT>CTT	p.P279L	EPB41_uc001brg.1_Missense_Mutation_p.P70L|EPB41_uc001brh.1_Missense_Mutation_p.P70L|EPB41_uc001bri.1_Missense_Mutation_p.P244L|EPB41_uc001brj.1_Missense_Mutation_p.P70L|EPB41_uc009vtk.1_Missense_Mutation_p.P244L|EPB41_uc001brk.2_Missense_Mutation_p.P279L|EPB41_uc001brl.1_Missense_Mutation_p.P279L|EPB41_uc009vtl.1_Missense_Mutation_p.P70L|EPB41_uc009vtm.1_5'UTR	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	279	FERM.				blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		ATAGGTGTCCCTTGGAATTTT	0.264													7	31					0	0	0.001984	0	0
BAI2	576	broad.mit.edu	37	1	32221746	32221746	+	Missense_Mutation	SNP	G	C	C	rs149675901		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:32221746G>C	uc001btn.2	-	4	1046	c.692C>G	c.(691-693)GCC>GGC	p.A231G	BAI2_uc010ogp.1_Missense_Mutation_p.A219G|BAI2_uc010ogq.1_Missense_Mutation_p.A231G|BAI2_uc001bto.2_Missense_Mutation_p.A231G|BAI2_uc001btq.1_Missense_Mutation_p.A219G|BAI2_uc010ogr.1_Missense_Mutation_p.A219G	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	231	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GGTGGAGCCGGCCCCCGCCTC	0.711													6	36					0	0	0.001882	0	0
SPOCD1	90853	broad.mit.edu	37	1	32264057	32264057	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:32264057C>T	uc001bts.1	-	8	2072	c.2014G>A	c.(2014-2016)GAC>AAC	p.D672N	SPOCD1_uc001btt.2_5'UTR|SPOCD1_uc001btu.2_Missense_Mutation_p.D672N|SPOCD1_uc001btv.2_Missense_Mutation_p.D165N|SPOCD1_uc001btw.1_5'UTR	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	672	TFIIS central.				transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		TTCCTGGGGTCCCGCAGGTTG	0.622													25	39					0	0	0.005443	0	0
RBBP4	5928	broad.mit.edu	37	1	33138435	33138435	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:33138435G>A	uc001bvr.2	+	11	1304	c.1145G>A	c.(1144-1146)TGG>TAG	p.W382*	RBBP4_uc001bvs.2_Nonsense_Mutation_p.W381*|RBBP4_uc010ohj.1_Nonsense_Mutation_p.W130*|RBBP4_uc010ohk.1_Nonsense_Mutation_p.W347*	NM_005610	NP_005601	Q09028	RBBP4_HUMAN	retinoblastoma binding protein 4 isoform a	382	WD 6.				cell cycle|CenH3-containing nucleosome assembly at centromere|DNA replication|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|ESC/E(Z) complex|NuRD complex|NURF complex|Sin3 complex	histone binding|histone deacetylase binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				GATTTCTCCTGGAATCCCAAT	0.383													15	34					0	0	0.008871	0	0
CSMD2	114784	broad.mit.edu	37	1	33985490	33985490	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:33985490C>T	uc001bxn.1	-	68	10255	c.10226G>A	c.(10225-10227)AGC>AAC	p.S3409N	CSMD2_uc001bxm.1_Missense_Mutation_p.S3553N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3409	Helical; (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCCACTGAGCTGCTGTTGGA	0.562													9	33					0	0	0.006214	0	0
CSMD2	114784	broad.mit.edu	37	1	34038122	34038122	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:34038122G>A	uc001bxn.1	-	51	7781	c.7752C>T	c.(7750-7752)GTC>GTT	p.V2584V	CSMD2_uc001bxm.1_Silent_p.V2582V	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2584	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACTGTGGTGGGACATTGCGGT	0.587													37	97					0	0	0.004289	0	0
CSMD2	114784	broad.mit.edu	37	1	34092084	34092084	+	Splice_Site	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:34092084A>T	uc001bxn.1	-	33	5205	c.5176_splice	c.e33+1	p.A1726_splice	CSMD2_uc001bxm.1_Splice_Site_p.A1766_splice|CSMD2_uc001bxo.1_Splice_Site_p.A639_splice	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2							integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGTCCTCCATACCTTGGTAGA	0.532													7	17					0	0	0.004482	0	0
GJB4	127534	broad.mit.edu	37	1	35227176	35227176	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:35227176G>A	uc001bxv.1	+	2	691	c.321G>A	c.(319-321)CTG>CTA	p.L107L	GJB4_uc001bxw.3_Silent_p.L107L	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	107	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				AGCACCACCTGAAACACGGGC	0.642													23	30					0	0	0.002299	0	0
ZMYM6	9204	broad.mit.edu	37	1	35474514	35474514	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:35474514G>A	uc001byh.2	-	11	1732	c.1504C>T	c.(1504-1506)CTC>TTC	p.L502F	ZMYM6_uc001byf.1_Missense_Mutation_p.L502F|ZMYM6_uc010oht.1_Missense_Mutation_p.L405F|ZMYM6_uc009vup.2_Missense_Mutation_p.L308F|ZMYM6_uc009vuq.1_Missense_Mutation_p.L502F|ZMYM6_uc009vur.1_Missense_Mutation_p.L308F	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	502	MYM-type 7.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				CGGGCAGAGAGGAATTTGCAA	0.403													18	56					0	0	0.007413	0	0
GRIK3	2899	broad.mit.edu	37	1	37282712	37282712	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:37282712G>A	uc001caz.2	-	13	2175	c.2040C>T	c.(2038-2040)ACC>ACT	p.T680T	GRIK3_uc001cba.1_Silent_p.T680T	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	680	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	ACTCGATTTTGGTTTGCTTGG	0.557													23	39					0	0	0.008361	0	0
RSPO1	284654	broad.mit.edu	37	1	38078505	38078505	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:38078505G>A	uc001cbl.1	-	8	1502	c.714C>T	c.(712-714)GGC>GGT	p.G238G	RSPO1_uc001cbm.1_Silent_p.G238G|RSPO1_uc009vvf.1_Silent_p.G211G|RSPO1_uc009vvg.1_Silent_p.G175G	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	238					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GTCTTCGAGAGCCAGCACCCG	0.642													33	46					0	0	0.002445	0	0
RSPO1	284654	broad.mit.edu	37	1	38082190	38082190	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:38082190G>A	uc001cbl.1	-	5	1040	c.252C>T	c.(250-252)TTC>TTT	p.F84F	RSPO1_uc001cbm.1_Silent_p.F84F|RSPO1_uc009vvf.1_Silent_p.F57F|RSPO1_uc009vvg.1_Silent_p.F84F	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	84	FU 1.				positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGCGGGCGTCGAAGTATCCAG	0.617													25	51					0	0	0.005443	0	0
EPHA10	284656	broad.mit.edu	37	1	38184120	38184120	+	Missense_Mutation	SNP	C	T	T	rs150426144	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:38184120C>T	uc009vvi.2	-	17	3037	c.2951G>A	c.(2950-2952)CGA>CAA	p.R984Q	EPHA10_uc001cbt.2_RNA|EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	984	Cytoplasmic (Potential).|SAM.					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GAGGGCCTCTCGATGTTCAGC	0.617													40	60					0	0	0.002852	0	0
MTF1	4520	broad.mit.edu	37	1	38281117	38281117	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:38281117C>T	uc001cce.1	-	11	2094	c.1953G>A	c.(1951-1953)AAG>AAA	p.K651K		NM_005955	NP_005946	Q14872	MTF1_HUMAN	metal-regulatory transcription factor 1	651						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			ovary(1)|pancreas(1)	2	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AGGAGCAGCCCTTTCTCCTGC	0.617													15	41					0	0	0.002450	0	0
MACF1	23499	broad.mit.edu	37	1	39763377	39763377	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:39763377C>T	uc010ois.1	+	22	2661	c.2456C>T	c.(2455-2457)ACC>ATC	p.T819I	MACF1_uc001cda.1_Missense_Mutation_p.T727I|MACF1_uc001cdc.1_5'Flank|MACF1_uc009vvq.1_5'Flank|MACF1_uc001cdb.1_5'Flank	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	819					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GACCACAACACCAGCTTATCC	0.463													29	54					0	0	0.007291	0	0
MACF1	23499	broad.mit.edu	37	1	39910341	39910341	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:39910341A>T	uc010oiu.1	+	45	14899	c.14768A>T	c.(14767-14769)TAT>TTT	p.Y4923F	MACF1_uc010ois.1_Missense_Mutation_p.Y4421F	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TAGGAACTCTATTCCCAGCTG	0.448													12	24					0	0	0.001368	0	0
RLF	6018	broad.mit.edu	37	1	40705671	40705671	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:40705671C>T	uc001cfc.3	+	8	5328	c.5297C>T	c.(5296-5298)CCT>CTT	p.P1766L	RLF_uc001cfd.3_Missense_Mutation_p.P1457L	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1766					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			ACTTACAAACCTATGGGATTT	0.363													21	35					0	0	0.010504	0	0
RIMS3	9783	broad.mit.edu	37	1	41092339	41092339	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:41092339G>A	uc001cfu.1	-	8	1246	c.777C>T	c.(775-777)ATC>ATT	p.I259I	RIMS3_uc001cfv.1_Silent_p.I259I	NM_014747	NP_055562	Q9UJD0	RIMS3_HUMAN	regulating synaptic membrane exocytosis 3	259					neurotransmitter transport	cell junction|synapse					0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.47e-17)			CGTCCAGCATGATCTGGGCCA	0.627													15	25					0	0	0.007413	0	0
RIMS3	9783	broad.mit.edu	37	1	41107542	41107542	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:41107542C>T	uc001cfu.1	-	3	525	c.56G>A	c.(55-57)CGG>CAG	p.R19Q	RIMS3_uc001cfv.1_Missense_Mutation_p.R19Q	NM_014747	NP_055562	Q9UJD0	RIMS3_HUMAN	regulating synaptic membrane exocytosis 3	19					neurotransmitter transport	cell junction|synapse					0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.47e-17)			GCTGGAGCTCCGCACCACATT	0.667													18	44					0	0	0.007413	0	0
KCNQ4	9132	broad.mit.edu	37	1	41250026	41250026	+	Silent	SNP	C	T	T	rs4500305		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:41250026C>T	uc001cgh.1	+	1	343	c.261C>T	c.(259-261)GTC>GTT	p.V87V	KCNQ4_uc001cgi.1_Silent_p.V87V	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	87	Cytoplasmic.				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			AGAACTGGGTCTACAACGTGC	0.677													12	42					0	0	0.001855	0	0
HIVEP3	59269	broad.mit.edu	37	1	41979178	41979178	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:41979178G>A	uc001cgz.3	-	8	6927	c.5714C>T	c.(5713-5715)GCC>GTC	p.A1905V	HIVEP3_uc001cha.3_Missense_Mutation_p.A1905V|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1905					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				AGAGGCGGGGGCATCTGGGGG	0.687													4	19					0	0	0.009096	0	0
CYP4A11	1579	broad.mit.edu	37	1	47395896	47395896	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:47395896G>A	uc001cqp.3	-	12	1502	c.1451C>T	c.(1450-1452)CCC>CTC	p.P484L		NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	484					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GATCCTGGTGGGATCAGGCAG	0.562													42	58					0	0	0.009718	0	0
CYP4A11	1579	broad.mit.edu	37	1	47395934	47395934	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:47395934C>T	uc001cqp.3	-	12	1464	c.1413G>A	c.(1411-1413)ACG>ACA	p.T471T		NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	471					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GGGTCAGGGCCGTGGCCACCT	0.542													34	74					0	0	0.004878	0	0
CYP4X1	260293	broad.mit.edu	37	1	47514275	47514275	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:47514275A>C	uc001cqt.2	+	10	1496	c.1246A>C	c.(1246-1248)AAC>CAC	p.N416H	CYP4X1_uc001cqr.2_Missense_Mutation_p.N415H|CYP4X1_uc001cqs.2_Missense_Mutation_p.N351H	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	416						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						TCTTCACCACAACCCTGCTGT	0.433													74	180					0	0	0.003610	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515777	47515777	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:47515777C>T	uc001cqt.2	+	12	1711	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	CYP4X1_uc001cqr.2_Silent_p.F486F|CYP4X1_uc001cqs.2_Silent_p.F422F	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	487						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTCTTACTTTCCCCAACCATT	0.448													29	74					0	0	0.007291	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610552	47610552	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:47610552G>A	uc001cqv.1	+	9	1183	c.1132G>A	c.(1132-1134)GAG>AAG	p.E378K	CYP4A22_uc009vyo.2_Missense_Mutation_p.E378K|CYP4A22_uc009vyp.2_Missense_Mutation_p.E280K	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	378						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GTGCATTAAGGAGGCACTGAG	0.582													12	26					0	0	0.001368	0	0
SLC5A9	200010	broad.mit.edu	37	1	48698123	48698123	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:48698123C>T	uc001cro.2	+	8	1034	c.982C>T	c.(982-984)CCC>TCC	p.P328S	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Missense_Mutation_p.P353S|SLC5A9_uc010omt.1_Missense_Mutation_p.P342S|SLC5A9_uc001crp.2_5'UTR|SLC5A9_uc010omu.1_5'UTR	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	328	Helical; (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						GAAGATCCTCCCCATGTTCTT	0.572													16	40					0	0	0.006122	0	0
AGBL4	84871	broad.mit.edu	37	1	49128876	49128876	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:49128876G>A	uc001cru.2	-	7	830	c.672C>T	c.(670-672)TTC>TTT	p.F224F	AGBL4_uc010omw.1_5'UTR|AGBL4_uc010omx.1_Silent_p.F236F|AGBL4_uc001crv.1_Silent_p.F77F|AGBL4_uc010omy.1_Intron	NM_032785	NP_116174	Q5VU57	CBPC6_HUMAN	ATP/GTP binding protein-like 4	224					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2				Colorectal(2;0.00349)|COAD - Colon adenocarcinoma(2;0.0037)		GTCCTGTGATGAATACCACCT	0.493													39	85					0	0	0.003214	0	0
AGBL4	84871	broad.mit.edu	37	1	49332876	49332876	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:49332876C>T	uc001cru.2	-	6	779	c.621G>A	c.(619-621)ACG>ACA	p.T207T	AGBL4_uc010omw.1_5'UTR|AGBL4_uc010omx.1_Silent_p.T219T|AGBL4_uc001crv.1_Silent_p.T60T|AGBL4_uc010omy.1_Silent_p.T60T	NM_032785	NP_116174	Q5VU57	CBPC6_HUMAN	ATP/GTP binding protein-like 4	207					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2				Colorectal(2;0.00349)|COAD - Colon adenocarcinoma(2;0.0037)		GGCTGGTTATCGTCAGGAGGT	0.488													9	30					0	0	0.008291	0	0
TTC39A	22996	broad.mit.edu	37	1	51753901	51753901	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:51753901C>T	uc001csl.2	-	18	1875	c.1770G>A	c.(1768-1770)CAG>CAA	p.Q590Q	TTC39A_uc001csk.2_Silent_p.Q555Q|TTC39A_uc010ond.1_Silent_p.Q527Q|TTC39A_uc010one.1_Silent_p.Q554Q|TTC39A_uc010onf.1_Silent_p.Q558Q|TTC39A_uc001csj.2_Silent_p.Q191Q	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	590							binding			skin(1)	1						GTGTGGCTGCCTGGATTCGAA	0.512													18	49					0	0	0.008871	0	0
OSBPL9	114883	broad.mit.edu	37	1	52211292	52211292	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:52211292G>A	uc001cst.2	+	5	422	c.403G>A	c.(403-405)GAA>AAA	p.E135K	OSBPL9_uc001css.2_Missense_Mutation_p.E153K|OSBPL9_uc001csx.2_RNA|OSBPL9_uc009vza.2_Missense_Mutation_p.E136K|OSBPL9_uc001csu.2_Missense_Mutation_p.E158K|OSBPL9_uc001csv.2_5'UTR|OSBPL9_uc001csw.2_Missense_Mutation_p.E135K|OSBPL9_uc001csy.2_5'UTR|OSBPL9_uc001csz.2_Intron|OSBPL9_uc001cta.2_Missense_Mutation_p.E38K	NM_024586	NP_078862	Q96SU4	OSBL9_HUMAN	oxysterol binding protein-like 9 isoform e	135					lipid transport		lipid binding			central_nervous_system(1)	1						AATCTTGATTGAACAATTAAA	0.289													16	22					0	0	0.004990	0	0
OSBPL9	114883	broad.mit.edu	37	1	52249660	52249660	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:52249660C>T	uc001cst.2	+	18	1606	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F	OSBPL9_uc001css.2_Silent_p.F534F|OSBPL9_uc001csx.2_RNA|OSBPL9_uc009vza.2_Silent_p.F530F|OSBPL9_uc001csu.2_Silent_p.F539F|OSBPL9_uc001csv.2_Silent_p.F364F|OSBPL9_uc001csw.2_Silent_p.F516F|OSBPL9_uc001csy.2_Silent_p.F351F|OSBPL9_uc001csz.2_Silent_p.F351F|OSBPL9_uc001cta.2_Silent_p.F419F|OSBPL9_uc001ctb.2_Silent_p.F314F	NM_024586	NP_078862	Q96SU4	OSBL9_HUMAN	oxysterol binding protein-like 9 isoform e	529					lipid transport		lipid binding			central_nervous_system(1)	1						AATCAAAATTCCTTGGGATGT	0.368													16	53					0	0	0.007413	0	0
CPT2	1376	broad.mit.edu	37	1	53679049	53679049	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:53679049C>T	uc001cvb.3	+	5	2274	c.1759C>T	c.(1759-1761)CTG>TTG	p.L587L		NM_000098	NP_000089	P23786	CPT2_HUMAN	carnitine O-palmitoyltransferase precursor	587	Mitochondrial matrix (By similarity).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	mitochondrial inner membrane	carnitine O-palmitoyltransferase activity				0					L-Carnitine(DB00583)|Perhexiline(DB01074)	CCACAATGTCCTGTCCACGAG	0.557													36	88					0	0	0.003271	0	0
GLIS1	148979	broad.mit.edu	37	1	53972352	53972352	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:53972352G>A	uc001cvr.1	-	10	2370	c.1803C>T	c.(1801-1803)TTC>TTT	p.F601F		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	601					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTCCATTGGGGAAGAAGCCAC	0.627													27	69					0	0	0.002096	0	0
CDCP2	200008	broad.mit.edu	37	1	54605439	54605439	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:54605439C>T	uc001cwv.1	-	4	1952	c.1104G>A	c.(1102-1104)GTG>GTA	p.V368V		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	368	CUB 3.					extracellular region				ovary(1)	1						CGATGTAGGCCACAGAGAAGC	0.627													17	33					0	0	0.004990	0	0
C1orf177	163747	broad.mit.edu	37	1	55282696	55282696	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:55282696G>A	uc001cyb.3	+	9	1139	c.1085G>A	c.(1084-1086)TGG>TAG	p.W362*	C1orf177_uc001cya.3_Nonsense_Mutation_p.W362*	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	362											0						CTCAACACCTGGCTGATGGAG	0.577													13	38					0	0	0.004007	0	0
PCSK9	255738	broad.mit.edu	37	1	55518042	55518042	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:55518042C>T	uc001cyf.1	+	4	906	c.615C>T	c.(613-615)TTC>TTT	p.F205F	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	205	Peptidase S8.				cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						TCACCGACTTCGAGAATGTGC	0.607													111	272					0	0	0.003610	0	0
C1orf168	199920	broad.mit.edu	37	1	57258448	57258448	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:57258448C>T	uc001cym.3	-	2	444	c.38G>A	c.(37-39)CGA>CAA	p.R13Q	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.R13Q	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	13										ovary(3)|skin(2)	5						AAATTTGGCTCGAAGTTCCTT	0.343													74	169					0	0	0.003610	0	0
C8A	731	broad.mit.edu	37	1	57378188	57378188	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:57378188G>A	uc001cyo.2	+	10	1625	c.1493G>A	c.(1492-1494)CGA>CAA	p.R498Q		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	498	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AATGCCTGCCGATGTGGGCCT	0.632													45	102					0	0	0.003610	0	0
C8B	732	broad.mit.edu	37	1	57406640	57406640	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:57406640A>C	uc001cyp.2	-	9	1347	c.1280T>G	c.(1279-1281)GTA>GGA	p.V427G	C8B_uc010oon.1_Missense_Mutation_p.V365G|C8B_uc010ooo.1_Missense_Mutation_p.V375G	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	427	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						CCCTCCTCGTACCAGGACCAC	0.577													14	27					0	0	0.004007	0	0
FGGY	55277	broad.mit.edu	37	1	59844482	59844482	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:59844482C>T	uc001czi.3	+	5	739	c.527C>T	c.(526-528)TCG>TTG	p.S176L	FGGY_uc001czg.2_Missense_Mutation_p.S64L|FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Missense_Mutation_p.S176L|FGGY_uc001czj.3_Missense_Mutation_p.S176L|FGGY_uc001czk.3_Missense_Mutation_p.S64L|FGGY_uc001czl.3_Missense_Mutation_p.S88L	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	176					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					GACTTCTTATCGTGGAAGGCA	0.393													10	31					0	0	0.008291	0	0
FGGY	55277	broad.mit.edu	37	1	60073487	60073487	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:60073487C>T	uc001czi.3	+	9	1128	c.916C>T	c.(916-918)CCG>TCG	p.P306S	FGGY_uc001czg.2_Missense_Mutation_p.P194S|FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Missense_Mutation_p.P306S|FGGY_uc001czj.3_Missense_Mutation_p.P305S|FGGY_uc001czk.3_Missense_Mutation_p.P194S|FGGY_uc001czl.3_Missense_Mutation_p.P218S|FGGY_uc001czm.3_Missense_Mutation_p.P7S	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	306					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					CAGCAAAGACCCGATTTTTGT	0.408													24	72					0	0	0.003954	0	0
C1orf87	127795	broad.mit.edu	37	1	60466802	60466802	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:60466802G>A	uc001czs.1	-	10	1311	c.1219C>T	c.(1219-1221)CCT>TCT	p.P407S	C1orf87_uc001czr.1_5'UTR	NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	407							calcium ion binding			ovary(1)|breast(1)	2						TCCATTGGAGGGGCAGGGGCT	0.418													10	31					0	0	0.008291	0	0
C1orf87	127795	broad.mit.edu	37	1	60506689	60506689	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:60506689C>T	uc001czs.1	-	4	549	c.457G>A	c.(457-459)GTG>ATG	p.V153M		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	153							calcium ion binding			ovary(1)|breast(1)	2						CTGCCTCTCACCATCTGTTCC	0.463													31	107					0	0	0.009535	0	0
INADL	10207	broad.mit.edu	37	1	62586894	62586894	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:62586894C>T	uc001dab.2	+	38	5046	c.4932C>T	c.(4930-4932)TTC>TTT	p.F1644F	INADL_uc001dac.2_RNA|INADL_uc009wag.2_Silent_p.F428F	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1644					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						ATCCCTCCTTCGCTCCTGTCA	0.507													38	110					0	0	0.002522	0	0
L1TD1	54596	broad.mit.edu	37	1	62675659	62675659	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:62675659G>A	uc001dae.3	+	4	1515	c.1213G>A	c.(1213-1215)GAG>AAG	p.E405K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	405	Glu-rich.									ovary(1)|skin(1)	2						AGGGCTggaggaggaggagga	0.239													24	34					0	0	0.002299	0	0
KANK4	163782	broad.mit.edu	37	1	62740257	62740257	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:62740257C>T	uc001dah.3	-	3	896	c.519G>A	c.(517-519)AGG>AGA	p.R173R	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	173										ovary(3)|skin(2)|lung(1)	6						CCTCAGAAGCCCTGCTGTGCA	0.642													12	27					0	0	0.001368	0	0
KANK4	163782	broad.mit.edu	37	1	62740610	62740610	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:62740610G>A	uc001dah.3	-	3	543	c.166C>T	c.(166-168)CCT>TCT	p.P56S	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	56										ovary(3)|skin(2)|lung(1)	6						CTGTGGATAGGAATTCTTTTG	0.532													55	132					0	0	0.003610	0	0
USP1	7398	broad.mit.edu	37	1	62910551	62910551	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:62910551G>A	uc001daj.1	+	6	1028	c.700G>A	c.(700-702)GAA>AAA	p.E234K	USP1_uc001dak.1_Missense_Mutation_p.E234K|USP1_uc001dal.1_Missense_Mutation_p.E234K	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	234					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		TACTAAGGTAGAAGAAATACC	0.353													34	55					0	0	0.004289	0	0
ATG4C	84938	broad.mit.edu	37	1	63299789	63299789	+	Splice_Site	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:63299789T>C	uc001dat.2	+	8	1174	c.1012_splice	c.e8+2	p.D338_splice	ATG4C_uc001dau.2_Splice_Site_p.D338_splice	NM_178221	NP_835739	Q96DT6	ATG4C_HUMAN	APG4 autophagy 4 homolog C isoform 8						autophagic vacuole assembly|protein targeting to membrane|proteolysis	cytosol|extracellular region	cysteine-type endopeptidase activity			ovary(1)	1						GATTTCAAGGTTAGTGATTTA	0.308													23	57					0	0	0.002299	0	0
ITGB3BP	23421	broad.mit.edu	37	1	63920114	63920114	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:63920114G>A	uc001dba.1	-	6	395	c.364C>T	c.(364-366)CTC>TTC	p.L122F	ITGB3BP_uc001dbb.1_Missense_Mutation_p.L161F|ITGB3BP_uc001dbc.1_RNA|ITGB3BP_uc001dbd.1_RNA|ITGB3BP_uc009wak.1_Missense_Mutation_p.L144F|ITGB3BP_uc001dbe.1_Missense_Mutation_p.L35F	NM_014288	NP_055103	Q13352	CENPR_HUMAN	integrin beta 3 binding protein	122					apoptosis|cell adhesion|CenH3-containing nucleosome assembly at centromere|induction of apoptosis by extracellular signals|mitotic prometaphase|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome, centromeric region|cytosol|membrane fraction|nucleoplasm	protein C-terminus binding|signal transducer activity				0						ATTCCAATGAGATTTTCAAGC	0.338													10	27					0	0	0.001855	0	0
DNAJC6	9829	broad.mit.edu	37	1	65831742	65831742	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:65831742C>T	uc001dcd.1	+	4	399	c.235C>T	c.(235-237)CCT>TCT	p.P79S	DNAJC6_uc001dcc.1_Missense_Mutation_p.P110S|DNAJC6_uc010opc.1_Missense_Mutation_p.P66S|DNAJC6_uc001dce.1_Missense_Mutation_p.P136S	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	79	Phosphatase tensin-type.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						GATGTCCTTTCCTCTGGACAA	0.428													55	138					0	0	0.003610	0	0
SGIP1	84251	broad.mit.edu	37	1	67147836	67147836	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:67147836C>T	uc001dcr.2	+	15	1316	c.1099C>T	c.(1099-1101)CCT>TCT	p.P367S	SGIP1_uc010opd.1_Intron|SGIP1_uc001dcs.2_Intron|SGIP1_uc001dct.2_Intron|SGIP1_uc009wat.2_Missense_Mutation_p.P134S	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	367	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						TCCTGGGCCTCCTCGCAATGT	0.567													57	151					0	0	0.003610	0	0
WLS	79971	broad.mit.edu	37	1	68564346	68564346	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:68564346A>T	uc001dee.2	-	12	1872	c.1601T>A	c.(1600-1602)TTC>TAC	p.F534Y	uc001deb.1_RNA|uc001dec.1_RNA	NM_001002292	NP_001002292	Q5T9L3	WLS_HUMAN	G protein-coupled receptor 177 isoform 2	Error:Variant_position_missing_in_Q5T9L3_after_alignment					multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Wnt receptor signaling pathway	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	signal transducer activity				0						gtcattgatgaaggaatattt	0													20	54					0	0	0.002780	0	0
SFRS11	9295	broad.mit.edu	37	1	70715710	70715710	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:70715710C>T	uc001des.2	+	11	1222	c.1098C>T	c.(1096-1098)TCC>TCT	p.S366S	SFRS11_uc001det.2_Silent_p.S366S|SFRS11_uc001deu.2_Silent_p.S373S|SFRS11_uc001dev.2_Silent_p.S176S|SFRS11_uc001dew.2_Silent_p.S306S	NM_004768	NP_004759	Q05519	SRS11_HUMAN	splicing factor, arginine/serine-rich 11	366					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						GAAAATTGTCCCGCTCACCAT	0.373													16	57					0	0	0.004007	0	0
CTH	1491	broad.mit.edu	37	1	70881666	70881666	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:70881666C>T	uc001dfd.2	+	2	340	c.196C>T	c.(196-198)CCC>TCC	p.P66S	CTH_uc009wbl.1_RNA|CTH_uc001dfe.2_Missense_Mutation_p.P66S|CTH_uc010oqq.1_Missense_Mutation_p.P66S	NM_001902	NP_001893	P32929	CGL_HUMAN	cystathionase isoform 1	66					cysteine biosynthetic process|hydrogen sulfide biosynthetic process|protein homotetramerization|protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine	cytoplasm|nucleus	cystathionine gamma-lyase activity|L-cysteine desulfhydrase activity|pyridoxal phosphate binding			lung(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	TTCTGGAAATCCCACTAGGAA	0.358													15	49					0	0	0.004990	0	0
SLC44A5	204962	broad.mit.edu	37	1	75672311	75672311	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:75672311G>A	uc001dgu.2	-	24	2285	c.2141C>T	c.(2140-2142)CCC>CTC	p.P714L	SLC44A5_uc001dgt.2_Intron|SLC44A5_uc001dgs.2_Intron|SLC44A5_uc001dgr.2_Intron|SLC44A5_uc010oqz.1_Intron|SLC44A5_uc010ora.1_Missense_Mutation_p.P708L|SLC44A5_uc010orb.1_Missense_Mutation_p.P584L	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	714	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						CTGCTTCTGGGGAACTAGTTG	0.373													33	68					0	0	0.004878	0	0
SLC44A5	204962	broad.mit.edu	37	1	75684323	75684323	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:75684323A>G	uc001dgu.2	-	17	1525	c.1381T>C	c.(1381-1383)TTA>CTA	p.L461L	SLC44A5_uc001dgt.2_Silent_p.L461L|SLC44A5_uc001dgs.2_Silent_p.L419L|SLC44A5_uc001dgr.2_Silent_p.L419L|SLC44A5_uc010oqz.1_Silent_p.L500L|SLC44A5_uc010ora.1_Silent_p.L455L|SLC44A5_uc010orb.1_Silent_p.L331L	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	461	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						AAGACAAATAAGTTGTATACA	0.438													19	42					0	0	0.007413	0	0
MSH4	4438	broad.mit.edu	37	1	76349430	76349430	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:76349430C>T	uc001dhd.1	+	15	2072	c.2031C>T	c.(2029-2031)ATC>ATT	p.I677I		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	677					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						ATTTTTTGATCATAACTGGAC	0.343								MMR					20	57					0	0	0.001882	0	0
ELTD1	64123	broad.mit.edu	37	1	79403957	79403957	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:79403957G>A	uc001diq.3	-	5	560	c.404C>T	c.(403-405)TCC>TTC	p.S135F		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	135	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TTCTTTTATGGATCTGATCTG	0.308													7	26					0	0	0.003080	0	0
LPHN2	23266	broad.mit.edu	37	1	82421744	82421744	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:82421744G>T	uc001dit.3	+	10	2147	c.1966G>T	c.(1966-1968)GTC>TTC	p.V656F	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.V656F|LPHN2_uc001div.2_Missense_Mutation_p.V656F|LPHN2_uc009wcd.2_Missense_Mutation_p.V656F|LPHN2_uc001diw.2_Missense_Mutation_p.V240F	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	669	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AGAAAATATTGGTAAGTGAAT	0.358													11	14					3.86212e-05	4.28119e-05	0.008291	1	0
PRKACB	5567	broad.mit.edu	37	1	84662426	84662426	+	Splice_Site	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:84662426G>T	uc001djj.2	+	6	810	c.546_splice	c.e6+1	p.Q182_splice	PRKACB_uc001djl.2_Splice_Site_p.Q229_splice|PRKACB_uc010ort.1_Splice_Site_p.Q189_splice|PRKACB_uc001djn.2_Splice_Site_p.Q186_splice|PRKACB_uc010oru.1_Splice_Site_p.Q170_splice|PRKACB_uc001djp.2_Splice_Site_p.Q188_splice|PRKACB_uc001djq.2_Splice_Site_p.Q152_splice|PRKACB_uc010orv.1_Splice_Site_p.Q169_splice|PRKACB_uc001dji.2_Splice_Site_p.Q182_splice|PRKACB_uc001djk.2_Splice_Site_p.Q229_splice|PRKACB_uc009wcf.1_Splice_Site_p.Q188_splice	NM_002731	NP_002722	P22694	KAPCB_HUMAN	cAMP-dependent protein kinase catalytic subunit						activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein signaling, coupled to cAMP nucleotide second messenger|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|regulation of insulin secretion|synaptic transmission|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|magnesium ion binding|protein binding			lung(2)|ovary(1)	3				all cancers(265;0.00536)|Epithelial(280;0.0161)|OV - Ovarian serous cystadenocarcinoma(397;0.141)		CTATATCCAGGTATGACTTTA	0.353													17	23					1.67942e-08	1.86588e-08	0.006122	1	0
GBP7	388646	broad.mit.edu	37	1	89599001	89599001	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:89599001C>T	uc001dna.2	-	10	1741	c.1602G>A	c.(1600-1602)ATG>ATA	p.M534I	GBP2_uc001dmy.1_Intron	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	534						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		TTTCCCTCTCCATCTTCTTCT	0.438													42	41					0	0	0.009718	0	0
LRRC8D	55144	broad.mit.edu	37	1	90401047	90401047	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:90401047G>A	uc001dnm.2	+	3	2845	c.2420G>A	c.(2419-2421)GGG>GAG	p.G807E	LRRC8D_uc001dnn.2_Missense_Mutation_p.G807E	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	807	LRR 13.					integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		GAGCTGAAGGGGAACTGCTTG	0.542													20	25					0	0	0.001882	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94639580	94639580	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:94639580T>C	uc001dqj.3	-	23	4000	c.3631A>G	c.(3631-3633)AAA>GAA	p.K1211E	ARHGAP29_uc009wdq.1_Intron	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	1211					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GCTGATGCTTTGTCTGGGTCT	0.547													13	25					0	0	0.001855	0	0
COL11A1	1301	broad.mit.edu	37	1	103483408	103483408	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:103483408G>A	uc001dul.2	-	11	1699	c.1381C>T	c.(1381-1383)CCC>TCC	p.P461S	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.P473S|COL11A1_uc001dun.2_Missense_Mutation_p.P422S|COL11A1_uc009weh.2_Missense_Mutation_p.P345S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	461	Triple-helical region (interrupted).				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GGTCCAGTGGGGCCTTGTAGA	0.383													33	42					0	0	0.005524	0	0
GSTM5	2949	broad.mit.edu	37	1	110256339	110256339	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:110256339G>A	uc001dyn.2	+	5	387	c.316G>A	c.(316-318)GAT>AAT	p.D106N	GSTM5_uc010ovu.1_Missense_Mutation_p.D65N	NM_000851	NP_000842	P46439	GSTM5_HUMAN	glutathione S-transferase mu 5	106	GST C-terminal.				xenobiotic metabolic process	endoplasmic reticulum membrane	glutathione transferase activity			central_nervous_system(6)	6		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Colorectal(144;0.0131)|all cancers(265;0.0252)|Epithelial(280;0.0265)|Lung(183;0.0425)|COAD - Colon adenocarcinoma(174;0.0474)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	CCAGGTTATGGATAACCACAT	0.522													14	16					0	0	0.004990	0	0
GSTM5	2949	broad.mit.edu	37	1	110257571	110257571	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:110257571G>A	uc001dyn.2	+	6	434	c.363G>A	c.(361-363)GAG>GAA	p.E121E	GSTM5_uc010ovu.1_Silent_p.E80E	NM_000851	NP_000842	P46439	GSTM5_HUMAN	glutathione S-transferase mu 5	121	GST C-terminal.				xenobiotic metabolic process	endoplasmic reticulum membrane	glutathione transferase activity			central_nervous_system(6)	6		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Colorectal(144;0.0131)|all cancers(265;0.0252)|Epithelial(280;0.0265)|Lung(183;0.0425)|COAD - Colon adenocarcinoma(174;0.0474)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	TGCCTCAGGAGAAACTGAAGC	0.542													25	35					0	0	0.003330	0	0
CSF1	1435	broad.mit.edu	37	1	110466382	110466382	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:110466382G>A	uc001dyu.2	+	6	1552	c.1139G>A	c.(1138-1140)TGG>TAG	p.W380*	CSF1_uc001dyt.2_Intron|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Nonsense_Mutation_p.W380*	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	380	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		GGCCAGGACTGGAATCACACC	0.647											OREG0013645	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	17					0	0	0.001855	0	0
SLC6A17	388662	broad.mit.edu	37	1	110735150	110735150	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:110735150T>C	uc009wfq.2	+	8	1590	c.1129T>C	c.(1129-1131)TAC>CAC	p.Y377H	SLC6A17_uc001dze.1_5'UTR	NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	377	Extracellular (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		AATCCTAGGGTACCTTAACAC	0.542													16	18					0	0	0.006122	0	0
DENND2C	163259	broad.mit.edu	37	1	115079246	115079246	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:115079246C>T	uc001eez.2	-	29		c.4397G>A				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGTGTGAACCTTCCTGGGGC	0.537													15	23					0	0	0.003163	0	0
CASQ2	845	broad.mit.edu	37	1	116283393	116283393	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:116283393C>T	uc001efx.3	-	3	640	c.376G>A	c.(376-378)GAT>AAT	p.D126N	CASQ2_uc010owu.1_Intron	NM_001232	NP_001223	O14958	CASQ2_HUMAN	cardiac calsequestrin 2 precursor	126					heart development|striated muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;1.25e-06)|all_epithelial(167;1.02e-06)|all_lung(203;8.03e-06)|Lung NSC(69;5.01e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		AACTCGCCATCAAACTCTATT	0.448													17	18					0	0	0.001882	0	0
NBPF9	400818	broad.mit.edu	37	1	144828544	144828544	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:144828544C>T	uc009wig.1	+	23	2665	c.2589C>T	c.(2587-2589)CTC>CTT	p.L863L	NBPF9_uc010oxn.1_Silent_p.L761L|NBPF9_uc010oxo.1_Silent_p.L788L|NBPF9_uc010oxr.1_Silent_p.L890L|NBPF9_uc010oxt.1_Silent_p.L678L|NBPF9_uc001ekg.1_Silent_p.L190L|NBPF9_uc001ekk.1_Silent_p.L434L|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Silent_p.L190L|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.L523L|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	863	NBPF 7.					cytoplasm					0						TTTCCAGGCTCAACGGCGTGC	0.453													20	125					0	0	0.003330	0	0
HIST2H3D	653604	broad.mit.edu	37	1	149784973	149784973	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:149784973C>T	uc010pbl.1	-	1	264	c.264G>A	c.(262-264)TCG>TCA	p.S88S	HIST2H2BF_uc010pbj.1_5'Flank|HIST2H2BF_uc010pbk.1_5'Flank|HIST2H2BF_uc001esr.2_5'Flank	NM_001123375	NP_001116847	Q71DI3	H32_HUMAN	histone cluster 2, H3d	88					blood coagulation|nucleosome assembly	nucleoplasm|nucleosome	DNA binding|protein binding				0						CCATCACGGCCGAGCTCTGGA	0.632													5	35					0	0	0.008291	0	0
SV2A	9900	broad.mit.edu	37	1	149883495	149883495	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:149883495G>A	uc001etg.2	-	3	1151	c.660C>T	c.(658-660)TTC>TTT	p.F220F	SV2A_uc001eth.2_Silent_p.F220F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	220	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	CTCCCCAGAGGAAGGCTCCCA	0.582													5	14					0	0	0.000602	0	0
RPRD2	23248	broad.mit.edu	37	1	150444353	150444354	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:150444353_150444354CC>AT	uc009wlr.2	+	11	3130_3131	c.2929_2930CC>AT	c.(2929-2931)CCG>ATG	p.P977M	RPRD2_uc010pcc.1_Intron|RPRD2_uc001eup.3_Missense_Mutation_p.P951M	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	977							protein binding			ovary(1)	1						CCTTTTCTCTCCGCAGAACACC	0.554													95	178					0	0	0.004672	0	0
RPRD2	23248	broad.mit.edu	37	1	150445502	150445502	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:150445502C>T	uc009wlr.2	+	11	4279	c.4078C>T	c.(4078-4080)CCT>TCT	p.P1360S	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Missense_Mutation_p.P1334S	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1360	Pro-rich.						protein binding			ovary(1)	1						CCTCAACGGCCCTGGCCTTAG	0.647													20	22					0	0	0.002299	0	0
HORMAD1	84072	broad.mit.edu	37	1	150672618	150672618	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:150672618C>T	uc001evk.1	-	14	1180	c.1074G>A	c.(1072-1074)CGG>CGA	p.R358R	GOLPH3L_uc001evj.2_5'Flank|GOLPH3L_uc010pci.1_5'Flank|HORMAD1_uc001evl.1_Silent_p.R351R|HORMAD1_uc001evm.1_Silent_p.R278R	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	358					blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			GACTTCTCTTCCGATTTTCTT	0.318													17	23					0	0	0.007413	0	0
TNFAIP8L2	79626	broad.mit.edu	37	1	151131232	151131232	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:151131232A>C	uc001ewx.2	+	2	185	c.59A>C	c.(58-60)AAG>ACG	p.K20T		NM_024575	NP_078851	Q6P589	TP8L2_HUMAN	tumor necrosis factor, alpha-induced protein	20					innate immune response						0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTACTGAGTAAGATGGCGGGT	0.532													14	31					0	0	0.003163	0	0
VPS72	6944	broad.mit.edu	37	1	151150580	151150580	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:151150580G>A	uc001exe.1	-	5	647	c.604C>T	c.(604-606)CAT>TAT	p.H202Y	TMOD4_uc001exd.2_5'Flank|TMOD4_uc001exc.3_5'Flank|TMOD4_uc010pct.1_5'Flank|VPS72_uc001exf.1_Missense_Mutation_p.H202Y	NM_005997	NP_005988	Q15906	VPS72_HUMAN	transcription factor-like 1	202	Potential.				chromatin modification|negative regulation of transcription from RNA polymerase II promoter	nucleus|protein complex	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|pancreas(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CGCTTCTTATGAACCTGCTTC	0.493													10	50					0	0	0.006214	0	0
ZNF687	57592	broad.mit.edu	37	1	151259302	151259302	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:151259302C>T	uc001exq.2	+	2	633	c.535C>T	c.(535-537)CCC>TCC	p.P179S	ZNF687_uc001exp.1_Missense_Mutation_p.P188S|ZNF687_uc009wmo.2_Missense_Mutation_p.P179S|ZNF687_uc009wmp.2_Missense_Mutation_p.P179S	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	179	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCCGCTGCCTCCCTCTGCACC	0.617													10	48					0	0	0.006214	0	0
PI4KB	5298	broad.mit.edu	37	1	151288331	151288331	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:151288331G>A	uc001ext.2	-	2	1042	c.627C>T	c.(625-627)TCC>TCT	p.S209S	PI4KB_uc001exr.2_Silent_p.S221S|PI4KB_uc001exs.2_Silent_p.S209S|PI4KB_uc001exu.2_Silent_p.S209S|PI4KB_uc010pcw.1_Intron|PI4KB_uc009wmq.1_Silent_p.S221S	NM_002651	NP_002642	Q9UBF8	PI4KB_HUMAN	catalytic phosphatidylinositol 4-kinase beta	209					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|receptor-mediated endocytosis	endosome|Golgi apparatus|mitochondrial outer membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum membrane	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			ovary(2)|skin(2)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CACACTGGAGGGAAAAGTTAA	0.522													13	58					0	0	0.002450	0	0
TCHH	7062	broad.mit.edu	37	1	152084928	152084928	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:152084928C>T	uc001ezp.2	-	2	765	c.765G>A	c.(763-765)AAG>AAA	p.K255K	TCHH_uc009wne.1_Silent_p.K255K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	255					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCTTCTTCCTTCCGGAGCA	0.587													31	162					0	0	0.009535	0	0
RPTN	126638	broad.mit.edu	37	1	152129433	152129433	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:152129433G>A	uc001ezs.1	-	3	207	c.142C>T	c.(142-144)CCA>TCA	p.P48S		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	48	S-100-like (By similarity).|EF-hand 1.					proteinaceous extracellular matrix	calcium ion binding				0						GGGTCATTTGGTCTCTGTTAG	0.428													19	34					0	0	0.010504	0	0
FLG2	388698	broad.mit.edu	37	1	152329028	152329028	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:152329028C>T	uc001ezw.3	-	3	1307	c.1234G>A	c.(1234-1236)GAA>AAA	p.E412K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	412	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGGAAAATTCATTTGAACTA	0.428													34	47					0	0	0.002836	0	0
FLG2	388698	broad.mit.edu	37	1	152329534	152329535	+	Missense_Mutation	DNP	CC	TT	TT	rs139597182	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:152329534_152329535CC>TT	uc001ezw.3	-	3	800_801	c.727_728GG>AA	c.(727-729)GGA>AAA	p.G243K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	243	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTCTCCAATCCACATGACAGA	0.47													37	110					0	0	0.004672	0	0
KPRP	448834	broad.mit.edu	37	1	152732718	152732718	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:152732718C>T	uc001fal.1	+	2	712	c.654C>T	c.(652-654)TTC>TTT	p.F218F		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	218						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCAGCTGTTTCCCTCAGTATC	0.572													20	114					0	0	0.002299	0	0
KPRP	448834	broad.mit.edu	37	1	152733502	152733502	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:152733502C>T	uc001fal.1	+	2	1496	c.1438C>T	c.(1438-1440)CCC>TCC	p.P480S		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	480	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGAGCCAATTCCCCTGCCGGC	0.657													41	77					0	0	0.007835	0	0
S100A9	6280	broad.mit.edu	37	1	153333238	153333238	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:153333238C>T	uc001fbq.2	+	3	312	c.269C>T	c.(268-270)TCC>TTC	p.S90F		NM_002965	NP_002956	P06702	S10A9_HUMAN	S100 calcium-binding protein A9	90					cell-cell signaling	cytoplasm|cytoskeleton|nucleus|plasma membrane	calcium ion binding|protein binding|signal transducer activity				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			ACCTGGGCCTCCCACGAGAAG	0.582													13	22					0	0	0.001855	0	0
S100A6	6277	broad.mit.edu	37	1	153507797	153507797	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:153507797G>A	uc001fbw.1	-	2	333	c.19C>T	c.(19-21)CAG>TAG	p.Q7*		NM_014624	NP_055439	P06703	S10A6_HUMAN	S100 calcium-binding protein A6	7					axonogenesis|positive regulation of fibroblast proliferation|signal transduction	cytosol|extrinsic to internal side of plasma membrane|nuclear envelope|perinuclear region of cytoplasm|ruffle	calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|S100 beta binding|tropomyosin binding			ovary(1)	1	all_lung(78;1.66e-32)|Lung NSC(65;5.71e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCAATGGCCTGATCCAGGGGG	0.607													32	44					0	0	0.003755	0	0
NPR1	4881	broad.mit.edu	37	1	153660603	153660603	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:153660603G>A	uc001fcs.3	+	15	2744	c.2323G>A	c.(2323-2325)GAG>AAG	p.E775K	NPR1_uc010pdz.1_Missense_Mutation_p.E521K|NPR1_uc010pea.1_Missense_Mutation_p.E253K	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	775	Cytoplasmic (Potential).|Protein kinase.				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TCACCTGGAGGAGTTGGGGCT	0.632													18	39					0	0	0.004990	0	0
CREB3L4	148327	broad.mit.edu	37	1	153945263	153945263	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:153945263T>C	uc001fdn.3	+	5	853	c.587T>C	c.(586-588)CTG>CCG	p.L196P	CREB3L4_uc010pef.1_Missense_Mutation_p.L49P|CREB3L4_uc001fdo.3_Missense_Mutation_p.L176P|CREB3L4_uc001fdm.1_Missense_Mutation_p.L196P|CREB3L4_uc001fdp.1_Missense_Mutation_p.L176P|CREB3L4_uc001fdr.2_Missense_Mutation_p.L196P|CREB3L4_uc001fdq.2_Missense_Mutation_p.L176P	NM_130898	NP_570968	Q8TEY5	CR3L4_HUMAN	cAMP responsive element binding protein 3-like	196	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GAGAAGCGTCTGCTGGGGCAG	0.597													9	5					0	0	0.004482	0	0
CREB3L4	148327	broad.mit.edu	37	1	153945887	153945887	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:153945887A>G	uc001fdn.3	+	8	1110	c.844A>G	c.(844-846)ACG>GCG	p.T282A	CREB3L4_uc010pef.1_Missense_Mutation_p.T135A|CREB3L4_uc001fdo.3_Missense_Mutation_p.T262A|CREB3L4_uc001fdm.1_Missense_Mutation_p.T282A|CREB3L4_uc001fdp.1_Missense_Mutation_p.T262A|CREB3L4_uc001fdr.2_Missense_Mutation_p.T282A|CREB3L4_uc001fdq.2_Missense_Mutation_p.T262A	NM_130898	NP_570968	Q8TEY5	CR3L4_HUMAN	cAMP responsive element binding protein 3-like	282	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CCAGCTGCAGACGCTAATTGC	0.517													19	40					0	0	0.003330	0	0
NUP210L	91181	broad.mit.edu	37	1	153974357	153974357	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:153974357C>T	uc001fdw.2	-	36	5107	c.5035G>A	c.(5035-5037)GAA>AAA	p.E1679K	NUP210L_uc009woq.2_Missense_Mutation_p.E588K|NUP210L_uc010peh.1_Intron	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1679						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TTGCTACGTTCACTGACCAGT	0.473													31	51					0	0	0.008361	0	0
AQP10	89872	broad.mit.edu	37	1	154295498	154295498	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:154295498C>T	uc001feu.2	+	3	313	c.273C>T	c.(271-273)ATC>ATT	p.I91I	AQP10_uc001fev.2_Silent_p.I91I|ATP8B2_uc001few.2_5'Flank	NM_080429	NP_536354	Q96PS8	AQP10_HUMAN	aquaporin 10	91	Cytoplasmic (Potential).				response to toxin|transmembrane transport|water transport	integral to membrane|plasma membrane	transporter activity			central_nervous_system(1)	1	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CCATGTGCATCGTTGGACGCC	0.448													16	80					0	0	0.006122	0	0
PKLR	5313	broad.mit.edu	37	1	155264324	155264324	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:155264324C>T	uc001fkb.3	-	6	953	c.914G>A	c.(913-915)GGA>GAA	p.G305E	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Missense_Mutation_p.G274E	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	305					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	GATGCCGTGTCCTTCCGGACC	0.597													31	35					0	0	0.008361	0	0
GON4L	54856	broad.mit.edu	37	1	155721823	155721823	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:155721823G>A	uc001flz.2	-	30	6498	c.6401C>T	c.(6400-6402)GCC>GTC	p.A2134V	GON4L_uc001flx.1_5'Flank|GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.A2133V|GON4L_uc009wrh.1_Missense_Mutation_p.A2133V|GON4L_uc001fma.1_Missense_Mutation_p.A2134V	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	2134					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					AGCTTCTGCGGCCTTTGGCTG	0.557													21	89					0	0	0.010504	0	0
LMNA	4000	broad.mit.edu	37	1	156084913	156084914	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:156084913_156084914GG>AA	uc001fni.2	+	1	453_454	c.204_205GG>AA	c.(202-207)GAGGTG>GAAATG	p.V69M	LMNA_uc001fnf.1_Missense_Mutation_p.V69M|LMNA_uc001fng.2_Missense_Mutation_p.V69M|LMNA_uc001fnh.2_Missense_Mutation_p.V69M|LMNA_uc009wro.1_Missense_Mutation_p.V69M	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	69	Interaction with MLIP.|Coil 1A.|Rod.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					AGTCTGAAGAGGTGGTCAGCCG	0.649									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				47	231					0	0	0.004672	0	0
VHLL	391104	broad.mit.edu	37	1	156268622	156268622	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:156268622G>A	uc001fok.2	-	1	807	c.359C>T	c.(358-360)CCA>CTA	p.P120L		NM_001004319	NP_001004319	Q6RSH7	VHLL_HUMAN	von Hippel-Lindau tumor suppressor-like	120	Beta-domain.				protein ubiquitination	nucleus				ovary(1)	1	Hepatocellular(266;0.158)					ATTGGAAGATGGCACAAACAA	0.478													32	74					0	0	0.002836	0	0
IQGAP3	128239	broad.mit.edu	37	1	156509322	156509322	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:156509322G>A	uc001fpf.2	-	25	2975	c.2900C>T	c.(2899-2901)CCC>CTC	p.P967L		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	967					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CAGGTAGATGGGCTGAGTCTG	0.507													15	37					0	0	0.003163	0	0
NTRK1	4914	broad.mit.edu	37	1	156845919	156845919	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:156845919G>A	uc001fqh.1	+	13	1605	c.1549G>A	c.(1549-1551)GGG>AGG	p.G517R	NTRK1_uc001fqf.1_Missense_Mutation_p.G481R|NTRK1_uc009wsi.1_Missense_Mutation_p.G216R|NTRK1_uc001fqi.1_Missense_Mutation_p.G511R|NTRK1_uc009wsk.1_Missense_Mutation_p.G514R	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	517	Cytoplasmic (Potential).|ATP (By similarity).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GTGGGAGCTGGGGGAGGGCGC	0.637			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			12	56					0	0	0.001855	0	0
PEAR1	375033	broad.mit.edu	37	1	156882687	156882687	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:156882687C>T	uc001fqj.1	+	18	2451	c.2335C>T	c.(2335-2337)CGG>TGG	p.R779W	PEAR1_uc001fqk.1_Missense_Mutation_p.R404W	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	779						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CATTGGCTATCGGCACTGGCA	0.602													15	72					0	0	0.007413	0	0
FCRL5	83416	broad.mit.edu	37	1	157490868	157490868	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:157490868G>A	uc001fqu.2	-	11	2612	c.2454C>T	c.(2452-2454)TCC>TCT	p.S818S	FCRL5_uc009wsm.2_Silent_p.S818S	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	818	Extracellular (Potential).|Ig-like C2-type 8.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CGGCCTCACAGGAGTAGTTTC	0.542													15	70					0	0	0.004007	0	0
CD1C	911	broad.mit.edu	37	1	158262655	158262655	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158262655C>T	uc001fru.2	+	4	1172	c.880C>T	c.(880-882)CTC>TTC	p.L294F	CD1C_uc001frv.2_Missense_Mutation_p.L97F	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	294	Extracellular (Potential).|Ig-like.				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GGACATCATCCTCTACTGGGG	0.532													6	26					0	0	0.001984	0	0
CD1E	913	broad.mit.edu	37	1	158325692	158325692	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158325692G>A	uc001fse.2	+	4	940	c.701G>A	c.(700-702)GGA>GAA	p.G234E	CD1E_uc010pid.1_Missense_Mutation_p.G232E|CD1E_uc010pie.1_Missense_Mutation_p.G135E|CD1E_uc010pif.1_Missense_Mutation_p.G45E|CD1E_uc001fsd.2_Missense_Mutation_p.G234E|CD1E_uc001fsk.2_Missense_Mutation_p.G144E|CD1E_uc001fsj.2_Missense_Mutation_p.G144E|CD1E_uc001fsc.2_Missense_Mutation_p.G45E|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Missense_Mutation_p.G45E|CD1E_uc001fsf.2_Missense_Mutation_p.G234E|CD1E_uc001fry.2_Missense_Mutation_p.G234E|CD1E_uc001fsg.2_Missense_Mutation_p.G45E|CD1E_uc001fsh.2_Missense_Mutation_p.G45E|CD1E_uc001fsi.2_Missense_Mutation_p.G234E|CD1E_uc009wsv.2_Missense_Mutation_p.G135E|CD1E_uc001frz.2_Missense_Mutation_p.G144E|CD1E_uc009wsw.2_5'UTR	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	234	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					CATGTCTCAGGATTCTACCCA	0.592													10	52					0	0	0.006214	0	0
OR10K2	391107	broad.mit.edu	37	1	158390030	158390030	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158390030G>A	uc010pii.1	-	1	627	c.627C>T	c.(625-627)ATC>ATT	p.I209I		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ACAATAAGGGGATAGCCAGGA	0.448													7	37					0	0	0.001984	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517200	158517200	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158517200C>T	uc010pil.1	-	1	696	c.696G>A	c.(694-696)AGG>AGA	p.R232R		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CAGAAGGGATCCTGAGGATGG	0.527													14	59					0	0	0.002450	0	0
SPTA1	6708	broad.mit.edu	37	1	158582658	158582658	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158582658G>A	uc001fst.1	-	51	7282	c.7083C>T	c.(7081-7083)TTC>TTT	p.F2361F		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2361	EF-hand 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCAGGGCTTGGAAGGCATTCT	0.453													10	40					0	0	0.006214	0	0
SPTA1	6708	broad.mit.edu	37	1	158592842	158592842	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158592842C>G	uc001fst.1	-	43	6250	c.6051G>C	c.(6049-6051)TGG>TGC	p.W2017C		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2017	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCAACTGTTCCCAGCGCTTCA	0.478													115	172					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158644350	158644350	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158644350C>T	uc001fst.1	-	9	1427	c.1228G>A	c.(1228-1230)GAC>AAC	p.D410N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	410	Spectrin 5.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGATGCCTGTCCAGCAGAACT	0.512													35	106					0	0	0.003271	0	0
OR6K2	81448	broad.mit.edu	37	1	158669785	158669785	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158669785C>T	uc001fsu.1	-	1	658	c.658G>A	c.(658-660)GAT>AAT	p.D220N		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ACAATACCATCGTAGGACATG	0.473													34	55					0	0	0.002096	0	0
OR6K6	128371	broad.mit.edu	37	1	158725526	158725526	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158725526C>T	uc001fsw.1	+	1	921	c.921C>T	c.(919-921)ATC>ATT	p.I307I		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	307	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					CTTTTGTTATCCTTGCTCCCT	0.438													17	59					0	0	0.004990	0	0
OR6N2	81442	broad.mit.edu	37	1	158746626	158746626	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:158746626G>A	uc010pir.1	-	1	800	c.800C>T	c.(799-801)TCC>TTC	p.S267F		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					AAGGGTCAGGGAATAGCTCTT	0.428													8	44					0	0	0.004482	0	0
CADM3	57863	broad.mit.edu	37	1	159166838	159166838	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:159166838C>T	uc001ftl.2	+	7	1082	c.940C>T	c.(940-942)CTC>TTC	p.L314F	CADM3_uc009wsy.1_Missense_Mutation_p.L268F|CADM3_uc001ftk.2_Missense_Mutation_p.L348F|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	314	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					CTACTACACCCTCAATGTTAA	0.493													4	38					0	0	0.001168	0	0
IGSF8	93185	broad.mit.edu	37	1	160062338	160062338	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:160062338C>T	uc001fva.2	-	5	1505	c.1460G>A	c.(1459-1461)GGA>GAA	p.G487E	IGSF8_uc001fuz.2_Missense_Mutation_p.G487E|IGSF8_uc009wtf.2_Missense_Mutation_p.G487E	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8	487	Ig-like C2-type 4.|Extracellular (Potential).				cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GCTGAGCTCTCCGTCCTCTGG	0.697													9	9					0	0	0.004482	0	0
IGSF8	93185	broad.mit.edu	37	1	160062789	160062789	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:160062789G>A	uc001fva.2	-	4	1282	c.1237C>T	c.(1237-1239)CGA>TGA	p.R413*	IGSF8_uc001fuz.2_Nonsense_Mutation_p.R413*|IGSF8_uc009wtf.2_Nonsense_Mutation_p.R413*	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8	413	Ig-like C2-type 3.|Extracellular (Potential).				cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CCAGACCCTCGAACATAGGCT	0.652													13	16					0	0	0.001855	0	0
ATP1A2	477	broad.mit.edu	37	1	160098476	160098476	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:160098476G>A	uc001fvc.2	+	9	1184	c.1052G>A	c.(1051-1053)CGG>CAG	p.R351Q	ATP1A2_uc001fvb.2_Missense_Mutation_p.R351Q|ATP1A2_uc010piz.1_Missense_Mutation_p.R196Q|ATP1A2_uc001fvd.2_Missense_Mutation_p.R87Q|ATP1A2_uc009wtg.1_Missense_Mutation_p.R39Q	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	351	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CGCATGGCACGGAAGAACTGC	0.577													9	52					0	0	0.000978	0	0
VANGL2	57216	broad.mit.edu	37	1	160389337	160389337	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:160389337C>T	uc001fwb.1	+	5	1037	c.738C>T	c.(736-738)TTC>TTT	p.F246F	VANGL2_uc001fwc.1_Silent_p.F246F	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	246	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AGCCTCAGTTCACGCTCAAGG	0.642													18	28					0	0	0.001882	0	0
CD84	8832	broad.mit.edu	37	1	160519728	160519728	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:160519728G>A	uc001fwh.3	-	7	975	c.951C>T	c.(949-951)TCC>TCT	p.S317S	CD84_uc001fwf.3_Silent_p.S300S|CD84_uc001fwg.3_Silent_p.S311S|CD84_uc009wtn.2_Nonsense_Mutation_p.R268*|CD84_uc001fwi.3_Silent_p.S186S	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	317	Cytoplasmic (Potential).|ITSM motif 2.				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ACTGCACTTCGGAATAAACTG	0.512													8	48					0	0	0.008291	0	0
ITLN1	55600	broad.mit.edu	37	1	160853271	160853271	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:160853271G>A	uc001fxc.2	-	3	220	c.104C>T	c.(103-105)CCA>CTA	p.P35L		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	35	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GGGCAGAGATGGAGACGAAGA	0.443													19	41					0	0	0.001882	0	0
USP21	27005	broad.mit.edu	37	1	161133953	161133953	+	Splice_Site	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:161133953G>A	uc010pke.1	+	10	1596	c.1219_splice	c.e10-1	p.K407_splice	USP21_uc010pkc.1_Splice_Site_p.K407_splice|USP21_uc010pkd.1_Splice_Site_p.K407_splice|USP21_uc010pkf.1_Splice_Site_p.K407_splice|PPOX_uc001fyj.2_5'Flank|PPOX_uc001fyn.2_5'Flank|PPOX_uc001fyg.2_5'Flank|PPOX_uc001fyl.2_5'Flank|PPOX_uc001fym.2_5'Flank|PPOX_uc001fyk.2_5'Flank|PPOX_uc001fyh.2_5'Flank|PPOX_uc010pkg.1_5'Flank|PPOX_uc009wuc.1_5'Flank|PPOX_uc010pkh.1_5'Flank|PPOX_uc001fyi.2_5'Flank	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21						histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			TTTTCCCCCAGAAAGGATTTG	0.478													10	48					0	0	0.006214	0	0
HSPA6	3310	broad.mit.edu	37	1	161496303	161496303	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:161496303C>T	uc001gap.2	+	2	2515	c.1855C>T	c.(1855-1857)CCT>TCT	p.P619S	HSPA6_uc001gaq.2_Missense_Mutation_p.P619S	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	619					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GCCTGGTGTCCCTGGGGGCAG	0.602													5	24					0	0	0.001984	0	0
NOS1AP	9722	broad.mit.edu	37	1	162336865	162336865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:162336865G>A	uc001gbv.2	+	10	1516	c.1129G>A	c.(1129-1131)GAG>AAG	p.E377K	NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.E372K|NOS1AP_uc009wut.1_Missense_Mutation_p.E82K	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	377					regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			CAGCTTGCTGGAGATCACCTT	0.657													34	123					0	0	0.006230	0	0
RGS5	8490	broad.mit.edu	37	1	163122481	163122481	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:163122481G>A	uc001gcn.2	-	4	490	c.243C>T	c.(241-243)TTC>TTT	p.F81F	RGS5_uc009wvb.2_RNA	NM_003617	NP_003608	O15539	RGS5_HUMAN	regulator of G-protein signalling 5	81	RGS.				negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity				0			LUSC - Lung squamous cell carcinoma(543;0.187)			CAGACTTCAGGAAACTTTTGA	0.398													35	55					0	0	0.003755	0	0
MGST3	4259	broad.mit.edu	37	1	165619140	165619140	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:165619140T>C	uc001gdf.2	+	2	144	c.56T>C	c.(55-57)TTT>TCT	p.F19S	MGST3_uc001gdg.2_Missense_Mutation_p.F33S	NM_004528	NP_004519	O14880	MGST3_HUMAN	microsomal glutathione S-transferase 3	19	Helical; (Potential).				leukotriene biosynthetic process|leukotriene production involved in inflammatory response|signal transduction|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glutathione peroxidase activity|glutathione transferase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Glutathione(DB00143)	GCTGCCAGCTTTATAATGGTG	0.517													12	47					0	0	0.001855	0	0
GPA33	10223	broad.mit.edu	37	1	167042666	167042666	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:167042666G>A	uc001gea.1	-	2	498	c.154C>T	c.(154-156)CGA>TGA	p.R52*		NM_005814	NP_005805	Q99795	GPA33_HUMAN	transmembrane glycoprotein A33 precursor	52	Ig-like V-type.|Extracellular (Potential).					integral to plasma membrane	receptor activity				0						AGTCCCTCTCGACTGGAGGTG	0.522													8	48					0	0	0.003080	0	0
DCAF6	55827	broad.mit.edu	37	1	167944107	167944107	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:167944107T>G	uc001gew.2	+	4	534	c.292T>G	c.(292-294)TTT>GTT	p.F98V	DCAF6_uc001gev.2_Missense_Mutation_p.F98V|DCAF6_uc001gex.2_Missense_Mutation_p.F98V|DCAF6_uc010plk.1_Missense_Mutation_p.F67V|DCAF6_uc001gey.2_5'UTR	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	98	WD 2.				positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGCAAACATATTTAGTGCAAA	0.338													10	46					0	0	0.001368	0	0
TBX19	9095	broad.mit.edu	37	1	168282184	168282184	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:168282184G>A	uc001gfl.2	+	8	1342	c.1291G>A	c.(1291-1293)GGC>AGC	p.G431S	TBX19_uc001gfj.3_Missense_Mutation_p.G299S|TBX19_uc001gfm.2_Missense_Mutation_p.G134S	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	431					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					TCCCTTCGCGGGCTGGGGTGG	0.617													6	41					0	0	0.004482	0	0
SELP	6403	broad.mit.edu	37	1	169565373	169565373	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:169565373C>T	uc001ggi.3	-	12	1957	c.1892_splice	c.e12-1	p.G631_splice	SELP_uc001ggh.2_Splice_Site_p.G466_splice|SELP_uc009wvr.2_Splice_Site_p.G631_splice	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor						platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	GATGCTATGCCTGTTGTGAGA	0.463													49	64					0	0	0.003610	0	0
SELE	6401	broad.mit.edu	37	1	169694893	169694893	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:169694893T>C	uc001ggm.3	-	13	1982	c.1825A>G	c.(1825-1827)ATC>GTC	p.I609V	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	609	Cytoplasmic (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					ACTTAAAGGATGTAAGAAGGC	0.403													19	32					0	0	0.010504	0	0
FMO3	2328	broad.mit.edu	37	1	171076868	171076868	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:171076868G>A	uc001ghi.2	+	4	485	c.374G>A	c.(373-375)TGG>TAG	p.W125*	FMO3_uc001ghh.2_Nonsense_Mutation_p.W125*|FMO3_uc010pmb.1_Nonsense_Mutation_p.W105*|FMO3_uc010pmc.1_Nonsense_Mutation_p.W62*	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	125					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACTGGCCAGTGGGATGTTACC	0.398													9	34					0	0	0.004482	0	0
FMO3	2328	broad.mit.edu	37	1	171079953	171079953	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:171079953C>T	uc001ghi.2	+	6	753	c.642C>T	c.(640-642)TCC>TCT	p.S214S	FMO3_uc001ghh.2_Silent_p.S214S|FMO3_uc010pmb.1_Silent_p.S194S|FMO3_uc010pmc.1_Silent_p.S151S	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	214					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGATCAGTTCCAGAAGTGGCT	0.348													19	111					0	0	0.002780	0	0
FMO3	2328	broad.mit.edu	37	1	171080030	171080030	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:171080030G>A	uc001ghi.2	+	6	830	c.719G>A	c.(718-720)GGA>GAA	p.G240E	FMO3_uc001ghh.2_Missense_Mutation_p.G240E|FMO3_uc010pmb.1_Missense_Mutation_p.G220E|FMO3_uc010pmc.1_Missense_Mutation_p.G177E	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	240					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACTCGATTTGGAACCTTCCTC	0.468													42	81					0	0	0.006999	0	0
SLC9A11	284525	broad.mit.edu	37	1	173494046	173494046	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:173494046G>A	uc001giz.2	-	20	2809	c.2386C>T	c.(2386-2388)CGT>TGT	p.R796C	SLC9A11_uc009wwe.2_Missense_Mutation_p.R354C|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	796					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ACAACATCACGACCCTCATGC	0.313													20	37					0	0	0.002299	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628349	173628349	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:173628349A>T	uc001gja.1	-	2	270	c.209T>A	c.(208-210)CTC>CAC	p.L70H	ANKRD45_uc001gjb.3_Missense_Mutation_p.L70H	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	86											0						TTCTTCTAAGAGAAGCTGCAT	0.453													15	55					0	0	0.002450	0	0
SERPINC1	462	broad.mit.edu	37	1	173883957	173883957	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:173883957G>A	uc001gjt.2	-	2	261	c.142C>T	c.(142-144)CCC>TCC	p.P48S		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	48					blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	GGATTCATGGGAATGTCCCGC	0.572											OREG0013990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	105					0	0	0.007291	0	0
TNR	7143	broad.mit.edu	37	1	175299289	175299289	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:175299289G>A	uc001gkp.1	-	19	3795	c.3714C>T	c.(3712-3714)TTC>TTT	p.F1238F	TNR_uc009wwu.1_Silent_p.F1238F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1238	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CGTAGGAGGCGAAGGCGGCCT	0.577													16	31					0	0	0.004007	0	0
TNR	7143	broad.mit.edu	37	1	175306816	175306816	+	Splice_Site	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:175306816C>G	uc001gkp.1	-	17	3464	c.3383_splice	c.e17-1	p.G1128_splice	TNR_uc009wwu.1_Splice_Site_p.G1128_splice	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor						axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ACCCGGCCTCCTGCAAGGAAA	0.502													6	18					0	0	0.001168	0	0
TNR	7143	broad.mit.edu	37	1	175355175	175355175	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:175355175G>A	uc001gkp.1	-	6	1851	c.1770C>T	c.(1768-1770)TTC>TTT	p.F590F	TNR_uc009wwu.1_Silent_p.F590F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	590	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TACCTGTTGTGAACTGAGTGG	0.592													35	48					0	0	0.006999	0	0
PAPPA2	60676	broad.mit.edu	37	1	176659405	176659405	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:176659405C>T	uc001gkz.2	+	5	3434	c.2270C>T	c.(2269-2271)CCC>CTC	p.P757L	PAPPA2_uc001gky.1_Missense_Mutation_p.P757L|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	757					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGCAATGACCCCTGCAAGGAG	0.557													39	68					0	0	0.009718	0	0
PAPPA2	60676	broad.mit.edu	37	1	176661355	176661355	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:176661355A>T	uc001gkz.2	+	6	3689	c.2525A>T	c.(2524-2526)AAG>ATG	p.K842M	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	842					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GAAAGCAGAAAGCCCACCCCC	0.498													49	80					0	0	0.003610	0	0
ASTN1	460	broad.mit.edu	37	1	176926840	176926840	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:176926840G>A	uc001glc.2	-	11	2073	c.1861C>T	c.(1861-1863)CGC>TGC	p.R621C	ASTN1_uc001glb.1_Missense_Mutation_p.R621C|ASTN1_uc001gld.1_Missense_Mutation_p.R621C|ASTN1_uc009wwx.1_Missense_Mutation_p.R621C	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	629	EGF-like 2.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TCCAGCTTGCGATCTGAAATA	0.537													17	41					0	0	0.008871	0	0
SEC16B	89866	broad.mit.edu	37	1	177935080	177935080	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:177935080A>G	uc001gli.1	-	3	450	c.360T>C	c.(358-360)GCT>GCC	p.A120A	SEC16B_uc001glk.1_5'UTR|SEC16B_uc009wwz.1_5'UTR|SEC16B_uc001glj.1_Silent_p.A120A|SEC16B_uc001gll.3_Silent_p.A120A	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	120	Tyr-rich.|Required for endoplasmic reticulum localization.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						AACTTCCATAAGCATATTCCT	0.458													4	9					0	0	0.009096	0	0
ANGPTL1	9068	broad.mit.edu	37	1	178834107	178834107	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:178834107C>T	uc001gma.2	-	3	1281	c.805G>A	c.(805-807)GTA>ATA	p.V269I	RALGPS2_uc001gly.1_Intron|RALGPS2_uc001glz.2_Intron|RALGPS2_uc010pnb.1_Intron|ANGPTL1_uc001gmb.2_Missense_Mutation_p.V269I|ANGPTL1_uc010pnc.1_Missense_Mutation_p.V191I	NM_004673	NP_004664	O95841	ANGL1_HUMAN	angiopoietin-like 1 precursor	269						extracellular space	receptor binding				0						ATGAAAGTTACCGGTGGTATC	0.403													25	39					0	0	0.003330	0	0
RALGPS2	55103	broad.mit.edu	37	1	178875917	178875917	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:178875917C>T	uc001glz.2	+	19	1975	c.1637C>T	c.(1636-1638)TCG>TTG	p.S546L	RALGPS2_uc010pnb.1_Missense_Mutation_p.S520L	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	546	Required for stimulation of nucleotide exchange by RALA (By similarity).|PH.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						TTAGGAAATTCGTACAAGTTT	0.333													6	24					0	0	0.004482	0	0
C1orf125	126859	broad.mit.edu	37	1	179497516	179497516	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:179497516G>A	uc001gmo.2	+	23	2792	c.2665G>A	c.(2665-2667)GAA>AAA	p.E889K	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E815K|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	889	Glu-rich.										0						TGGAGAAGATGAAAATGTTCA	0.398													17	27					0	0	0.006122	0	0
LHX4	89884	broad.mit.edu	37	1	180243418	180243418	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:180243418G>A	uc001goe.1	+	6	1100	c.877G>A	c.(877-879)GAC>AAC	p.D293N	uc001gof.1_Intron	NM_033343	NP_203129	Q969G2	LHX4_HUMAN	LIM homeobox protein 4	293						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						CTTCTCCATGGACGGGACAGG	0.527													25	89					0	0	0.003330	0	0
ZNF648	127665	broad.mit.edu	37	1	182026812	182026812	+	Missense_Mutation	SNP	C	T	T	rs141227760	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:182026812C>T	uc001goz.2	-	2	542	c.334G>A	c.(334-336)GAG>AAG	p.E112K		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	112					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCCTGGGTCTCGTTGATCTTT	0.547													34	53					0	0	0.002836	0	0
RGL1	23179	broad.mit.edu	37	1	183711422	183711422	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:183711422G>A	uc001gqm.2	+	2	591	c.130G>A	c.(130-132)GAG>AAG	p.E44K	RGL1_uc010pof.1_Missense_Mutation_p.G8E|RGL1_uc010pog.1_Missense_Mutation_p.E44K|RGL1_uc010poh.1_Missense_Mutation_p.E44K	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	Error:Variant_position_missing_in_Q9NZL6_after_alignment					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						AAAGACAGAGGAGGTAAGATG	0.438													9	58					0	0	0.006214	0	0
RGL1	23179	broad.mit.edu	37	1	183885623	183885623	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:183885623G>A	uc001gqo.2	+	16	1949	c.1792G>A	c.(1792-1794)GAC>AAC	p.D598N	RGL1_uc001gqm.2_Missense_Mutation_p.D633N|RGL1_uc010pog.1_Missense_Mutation_p.D596N|RGL1_uc010poh.1_Missense_Mutation_p.D596N|RGL1_uc010poi.1_Missense_Mutation_p.D569N	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	598	Ser-rich.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						CCATTCCATGGACACAAATTC	0.502													28	102					0	0	0.005443	0	0
HMCN1	83872	broad.mit.edu	37	1	186086187	186086187	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:186086187G>A	uc001grq.1	+	76	11852	c.11623G>A	c.(11623-11625)GAA>AAA	p.E3875K		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3875	Ig-like C2-type 37.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGCAACCTATGAATGTACTGT	0.403													34	43					0	0	0.002836	0	0
HMCN1	83872	broad.mit.edu	37	1	186086707	186086707	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:186086707G>A	uc001grq.1	+	77	12029	c.11800G>A	c.(11800-11802)GGT>AGT	p.G3934S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3934	Ig-like C2-type 38.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GACCAAAAATGGTATAAGACT	0.423													19	67					0	0	0.010504	0	0
C1orf27	54953	broad.mit.edu	37	1	186375259	186375259	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:186375259C>T	uc001grw.2	+	13	1281	c.1045C>T	c.(1045-1047)CCC>TCC	p.P349S	C1orf27_uc010poq.1_Missense_Mutation_p.P326S|C1orf27_uc010por.1_Missense_Mutation_p.P317S	NM_017847	NP_060317	Q5SWX8	ODR4_HUMAN	odorant response abnormal 4 isoform 1	349						integral to membrane	oxidoreductase activity|zinc ion binding			ovary(1)	1						AGTCTTTGTTCCCCTTCCTGG	0.373													28	45					0	0	0.007291	0	0
PDC	5132	broad.mit.edu	37	1	186415681	186415681	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:186415681T>A	uc001gsa.2	-	3	163	c.90A>T	c.(88-90)AGA>AGT	p.R30S	PDC_uc001grz.2_5'UTR	NM_002597	NP_002588	P20941	PHOS_HUMAN	phosducin isoform a	30					G-protein coupled receptor protein signaling pathway|phototransduction|visual perception	actin cytoskeleton|cytosol|nucleus|photoreceptor inner segment|photoreceptor outer segment	phospholipase inhibitor activity			skin(1)	1		Breast(1374;1.53e-05)		KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.0129)		ATTTAAACTTTCTCCAATCAT	0.333													12	45					0	0	0.002450	0	0
PTGS2	5743	broad.mit.edu	37	1	186645691	186645691	+	Missense_Mutation	SNP	C	T	T	rs148160346		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:186645691C>T	uc001gsb.2	-	7	1015	c.878G>A	c.(877-879)CGG>CAG	p.R293Q	PTGS2_uc009wyo.2_Missense_Mutation_p.R140Q	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	293					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	GTTGTGTTCCCGCAGCCAGAT	0.502													10	52					0	0	0.008291	0	0
PTGS2	5743	broad.mit.edu	37	1	186646891	186646891	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:186646891G>A	uc001gsb.2	-	5	666	c.529C>T	c.(529-531)CCC>TCC	p.P177S	PTGS2_uc009wyo.2_Intron	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	177					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	GAGCCCTGGGGATCAGGGATG	0.423													20	34					0	0	0.008871	0	0
FAM5C	339479	broad.mit.edu	37	1	190067226	190067226	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:190067226C>T	uc001gse.1	-	8	2455	c.2223G>A	c.(2221-2223)AGG>AGA	p.R741R	FAM5C_uc010pot.1_Silent_p.R639R	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	741						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CAGATTGGATCCTCACCACCT	0.443													23	78					0	0	0.001882	0	0
CFH	3075	broad.mit.edu	37	1	196654301	196654301	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:196654301C>T	uc001gtj.3	+	7	1138	c.898C>T	c.(898-900)CCT>TCT	p.P300S	CFH_uc001gti.3_Missense_Mutation_p.P300S|CFH_uc009wyw.2_Missense_Mutation_p.P300S|CFH_uc009wyx.2_Missense_Mutation_p.P236S	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	300	Sushi 5.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TGGTTTTTATCCTGCAACCCG	0.398													16	78					0	0	0.004007	0	0
CRB1	23418	broad.mit.edu	37	1	197390617	197390617	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:197390617G>A	uc001gtz.2	+	6	1794	c.1659G>A	c.(1657-1659)AAG>AAA	p.K553K	CRB1_uc010poz.1_Silent_p.K484K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.K441K|CRB1_uc010ppb.1_Silent_p.K553K|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.K34K|CRB1_uc001gub.1_Silent_p.K202K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	553	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATCAGTCAAAGGTGCTTCTGT	0.458													34	61					0	0	0.007835	0	0
C1orf106	55765	broad.mit.edu	37	1	200880585	200880585	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:200880585G>A	uc001gvo.2	+	9	1249	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N	C1orf106_uc010ppm.1_Missense_Mutation_p.D322N	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	407										skin(2)|ovary(1)	3						CTTCAGGGTGGATTCCTTCCG	0.632													29	163					0	0	0.009535	0	0
KIF21B	23046	broad.mit.edu	37	1	200973910	200973910	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:200973910G>A	uc001gvs.1	-	6	1201	c.884C>T	c.(883-885)TCC>TTC	p.S295F	KIF21B_uc001gvr.1_Missense_Mutation_p.S295F|KIF21B_uc009wzl.1_Missense_Mutation_p.S295F|KIF21B_uc010ppn.1_Missense_Mutation_p.S295F|KIF21B_uc001gvt.1_Missense_Mutation_p.S78F	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	295	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						ACAGTTGATGGAGATGCCCTC	0.607													18	26					0	0	0.002299	0	0
CACNA1S	779	broad.mit.edu	37	1	201036090	201036090	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:201036090C>T	uc001gvv.2	-	20	2809	c.2582G>A	c.(2581-2583)GGT>GAT	p.G861D		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	861	III.|Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GCAGAAGGAACCCTTGTGCAG	0.597													4	22					0	0	0.009096	0	0
CACNA1S	779	broad.mit.edu	37	1	201054112	201054112	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:201054112C>T	uc001gvv.2	-	9	1425	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	400	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCTGCAATTTCATACAGGCTC	0.547													14	64					0	0	0.003163	0	0
NAV1	89796	broad.mit.edu	37	1	201751934	201751934	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:201751934C>T	uc001gwu.2	+	6	2641	c.2294C>T	c.(2293-2295)CCC>CTC	p.P765L	NAV1_uc001gwv.1_Missense_Mutation_p.P273L|NAV1_uc001gww.1_Missense_Mutation_p.P374L|NAV1_uc001gwx.2_Missense_Mutation_p.P374L|NAV1_uc001gwy.1_Missense_Mutation_p.P146L	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	765					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						GAAAGTACTCCCAAGAACCAA	0.557													7	37					0	0	0.001984	0	0
LGR6	59352	broad.mit.edu	37	1	202279388	202279388	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:202279388G>A	uc001gxu.2	+	16	1470	c.1470G>A	c.(1468-1470)AAG>AAA	p.K490K	LGR6_uc001gxv.2_Silent_p.K438K|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.K351K	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	490	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GCTTCTTCAAGGCCTCTGGGC	0.582													26	115					0	0	0.006320	0	0
KDM5B	10765	broad.mit.edu	37	1	202722118	202722118	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:202722118G>A	uc001gyf.2	-	12	1732	c.1616C>T	c.(1615-1617)CCA>CTA	p.P539L	KDM5B_uc009xag.2_Missense_Mutation_p.P575L|KDM5B_uc001gyg.1_Missense_Mutation_p.P381L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	539	JmjC.				negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						AAAGAGTTCTGGAGCTAGTTT	0.453													8	64					0	0	0.004482	0	0
MYBPH	4608	broad.mit.edu	37	1	203138156	203138156	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:203138156G>A	uc001gzh.1	-	9	1354	c.1295C>T	c.(1294-1296)TCT>TTT	p.S432F	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	432	Ig-like C2-type 2.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		GCCTTGCTCAGAGAGGGCGCG	0.552													22	97					0	0	0.003330	0	0
FMOD	2331	broad.mit.edu	37	1	203317141	203317141	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:203317141G>A	uc001gzr.2	-	2	394	c.258C>T	c.(256-258)TTC>TTT	p.F86F	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	86	Cys-rich.|LRRNT.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			TGGCCGTGGGGAAGTTGGGTG	0.592													5	7					0	0	0.001168	0	0
ATP2B4	493	broad.mit.edu	37	1	203676226	203676226	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:203676226G>A	uc001gzw.2	+	9	2073	c.1189G>A	c.(1189-1191)GAG>AAG	p.E397K	ATP2B4_uc001gzv.2_Missense_Mutation_p.E397K|ATP2B4_uc009xaq.2_Missense_Mutation_p.E397K	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	397	Extracellular (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ATGGCTCCCTGAGTGTACTCC	0.493													6	47					0	0	0.001168	0	0
LRRN2	10446	broad.mit.edu	37	1	204588975	204588975	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:204588975T>G	uc001hbe.1	-	3	534	c.146A>C	c.(145-147)GAG>GCG	p.E49A	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.E49A|LRRN2_uc009xbf.1_Missense_Mutation_p.E49A|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	49	Extracellular (Potential).|LRRNT.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			AGTGGTAGCCTCGCGGTAGGA	0.657													7	25					0	0	0.001984	0	0
NFASC	23114	broad.mit.edu	37	1	204923368	204923368	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:204923368G>A	uc001hbj.2	+	6	596	c.268G>A	c.(268-270)GTG>ATG	p.V90M	NFASC_uc001hbh.2_Missense_Mutation_p.V90M|NFASC_uc010pqz.1_Missense_Mutation_p.V84M|NFASC_uc010pra.1_Missense_Mutation_p.V84M|NFASC_uc001hbi.2_Missense_Mutation_p.V84M|NFASC_uc009xbg.1_Missense_Mutation_p.V157M|NFASC_uc010prb.1_Missense_Mutation_p.V84M|NFASC_uc010prc.1_Translation_Start_Site	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	90	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GGACCCCCGGGTGTCCATGAG	0.597													15	34					0	0	0.003163	0	0
CNTN2	6900	broad.mit.edu	37	1	205033517	205033517	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:205033517C>T	uc001hbr.2	+	11	1577	c.1308C>T	c.(1306-1308)ATC>ATT	p.I436I	CNTN2_uc001hbq.1_Silent_p.I327I|CNTN2_uc001hbs.2_Silent_p.I224I	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	436	Ig-like C2-type 5.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GGGGAGAGATCCTTATCCCCT	0.622													23	148					0	0	0.002299	0	0
TMCC2	9911	broad.mit.edu	37	1	205238338	205238338	+	Silent	SNP	C	T	T	rs145697603		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:205238338C>T	uc001hbz.1	+	4	1452	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	TMCC2_uc010prf.1_Silent_p.F258F|TMCC2_uc001hca.2_Silent_p.F111F|TMCC2_uc001hcb.1_Silent_p.F96F|TMCC2_uc001hcc.1_5'UTR|TMCC2_uc001hcd.2_Silent_p.F103F	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	336	Potential.					integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			AGCAAGTGTTCGAGAAGAAGA	0.567													5	19					0	0	0.000602	0	0
AVPR1B	553	broad.mit.edu	37	1	206224958	206224958	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:206224958C>T	uc001hds.2	+	1	676	c.518C>T	c.(517-519)TCC>TTC	p.S173F		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	173	Helical; Name=4; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	TTCATTTTTTCCCTGCGGGAG	0.652													21	39					0	0	0.002780	0	0
C1orf116	79098	broad.mit.edu	37	1	207195889	207195889	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:207195889C>T	uc001hfd.2	-	4	1479	c.1220G>A	c.(1219-1221)GGG>GAG	p.G407E	C1orf116_uc009xcb.1_Missense_Mutation_p.G161E	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	407	Ala-rich.					cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					cagagccttcccagcagcagg	0.239													21	23					0	0	0.008871	0	0
C4BPA	722	broad.mit.edu	37	1	207297618	207297618	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:207297618C>T	uc001hfo.2	+	6	807	c.613C>T	c.(613-615)CCC>TCC	p.P205S		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	205	Sushi 3.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CAGCTGTGACCCCCGCTTCTC	0.493													8	42					0	0	0.006214	0	0
CR1	1378	broad.mit.edu	37	1	207737282	207737282	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:207737282G>A	uc001hfy.2	+	14	2450	c.2310G>A	c.(2308-2310)CAG>CAA	p.Q770Q	CR1_uc009xcl.1_Intron|CR1_uc001hfx.2_Silent_p.Q1220Q|CR1_uc009xck.1_Intron	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	770	Sushi 12.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CACCCGGGCAGGAAGTGTTCT	0.582													38	30					0	0	0.003610	0	0
CR1L	1379	broad.mit.edu	37	1	207850845	207850845	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:207850845C>T	uc001hga.3	+	2	330	c.209C>T	c.(208-210)TCC>TTC	p.S70F	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	70	Sushi 1.					cytoplasm|extracellular region|membrane					0						CCTGGTTATTCCGGAAGACCG	0.473													52	84					0	0	0.003610	0	0
PLXNA2	5362	broad.mit.edu	37	1	208390556	208390556	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:208390556G>A	uc001hgz.2	-	2	1470	c.712C>T	c.(712-714)CAC>TAC	p.H238Y	PLXNA2_uc001hha.3_Missense_Mutation_p.H292Y	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	238	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		ATGTCAAAGTGGGAGACCAGG	0.552													41	182					0	0	0.008740	0	0
LOC642587	642587	broad.mit.edu	37	1	209605619	209605619	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:209605619C>T	uc009xcn.2	+	4	617	c.234C>T	c.(232-234)ACC>ACT	p.T78T		NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		ccgccaccaccgccgccgcca	0.289													11	8					0	0	0.001368	0	0
FLVCR1	28982	broad.mit.edu	37	1	213061908	213061908	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:213061908C>T	uc001hjt.2	+	7	1583	c.1385C>T	c.(1384-1386)TCA>TTA	p.S462L		NM_014053	NP_054772	Q9Y5Y0	FLVC1_HUMAN	feline leukemia virus subgroup C cellular	462	Helical; (Potential).				cell death|cellular iron ion homeostasis|heme export|transmembrane transport	integral to plasma membrane	heme transporter activity|protein binding|receptor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.00733)|all cancers(67;0.013)|GBM - Glioblastoma multiforme(131;0.0845)|Epithelial(68;0.11)		GAAGGTACTTCATCTGGTCTT	0.368													29	64					0	0	0.007291	0	0
CENPF	1063	broad.mit.edu	37	1	214813728	214813728	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:214813728C>T	uc001hkm.2	+	12	2221	c.2047C>T	c.(2047-2049)CAC>TAC	p.H683Y		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	683	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		CAGAAACCTTCACAACGTGTT	0.418													5	15					0	0	0.000602	0	0
USH2A	7399	broad.mit.edu	37	1	216495296	216495296	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:216495296C>T	uc001hku.1	-	9	1960	c.1573G>A	c.(1573-1575)GAT>AAT	p.D525N	USH2A_uc001hkv.2_Missense_Mutation_p.D525N	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	525	Laminin EGF-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TCGCAGTTATCGGCATGACCA	0.443										HNSCC(13;0.011)			37	53					0	0	0.008740	0	0
GPATCH2	55105	broad.mit.edu	37	1	217784405	217784405	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:217784405C>T	uc001hlf.1	-	4	940	c.844G>A	c.(844-846)GAA>AAA	p.E282K	GPATCH2_uc001hlg.3_Missense_Mutation_p.E282K	NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	282						intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		TCACTCTGTTCATCATCACCT	0.423													28	42					0	0	0.007291	0	0
SLC30A10	55532	broad.mit.edu	37	1	220091654	220091654	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:220091654C>T	uc001hlw.2	-	3	1112	c.901G>A	c.(901-903)GAG>AAG	p.E301K	SLC30A10_uc001hlu.1_RNA|SLC30A10_uc001hlv.2_Missense_Mutation_p.E56K|SLC30A10_uc001hlx.2_Missense_Mutation_p.E76K	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	301	Cytoplasmic (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		GCAGCGGTCTCCTTGATAAGC	0.468													26	103					0	0	0.004656	0	0
IARS2	55699	broad.mit.edu	37	1	220315224	220315224	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:220315224C>T	uc001hmc.2	+	20	2598	c.2494C>T	c.(2494-2496)CGT>TGT	p.R832C	IARS2_uc001hmd.2_Missense_Mutation_p.R168C	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	832					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TGTAATAGTTCGTTCTTTTGC	0.378													16	98					0	0	0.003163	0	0
HHIPL2	79802	broad.mit.edu	37	1	222712077	222712077	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:222712077C>T	uc001hnh.1	-	5	1548	c.1490G>A	c.(1489-1491)GGG>GAG	p.G497E		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	497					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		GACTGACTTCCCCACTGCATG	0.468													39	174					0	0	0.007835	0	0
DISP1	84976	broad.mit.edu	37	1	223178316	223178316	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:223178316G>A	uc001hnu.1	+	8	3724	c.3577G>A	c.(3577-3579)GAA>AAA	p.E1193K		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1193					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TGAGTTTTATGAATTAGAACC	0.443													142	283					0	0	0.003610	0	0
PARP1	142	broad.mit.edu	37	1	226566910	226566910	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:226566910C>T	uc001hqd.3	-	12	1849	c.1678G>A	c.(1678-1680)GTG>ATG	p.V560M		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	560					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		ACGATGTCCACCAGGCCAAGG	0.527								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					20	99					0	0	0.008871	0	0
WNT9A	7483	broad.mit.edu	37	1	228109363	228109363	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:228109363G>A	uc001hri.2	-	4	1042	c.954C>T	c.(952-954)AAC>AAT	p.N318N		NM_003395	NP_003386	O14904	WNT9A_HUMAN	wingless-type MMTV integration site family,	318					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|cornea development in camera-type eye|embryonic arm morphogenesis|embryonic skeletal joint morphogenesis|endoderm development|iris morphogenesis|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|neuron differentiation|positive regulation of smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding|signal transducer activity			central_nervous_system(1)|pancreas(1)	2		Prostate(94;0.0405)				TGCTCTCGCAGTTCTTCTCAC	0.647													6	11					0	0	0.001168	0	0
OBSCN	84033	broad.mit.edu	37	1	228451840	228451840	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:228451840G>A	uc009xez.1	+	16	4653	c.4609G>A	c.(4609-4611)GAG>AAG	p.E1537K	OBSCN_uc001hsn.2_Missense_Mutation_p.E1537K	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1537	Ig-like 16.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GTTTGCCAAGGAGCAGCCAGC	0.652													7	28					0	0	0.003080	0	0
OBSCN	84033	broad.mit.edu	37	1	228482045	228482045	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:228482045C>T	uc009xez.1	+	42	11368	c.11324C>T	c.(11323-11325)GCT>GTT	p.A3775V	OBSCN_uc001hsn.2_Missense_Mutation_p.A3775V|OBSCN_uc001hsq.1_Missense_Mutation_p.A1031V	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3775	Ig-like 38.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGTGGCCTGGCTGTGGTGGAT	0.617													17	74					0	0	0.004990	0	0
GALNT2	2590	broad.mit.edu	37	1	230338955	230338955	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:230338955C>T	uc010pwa.1	+	3	365	c.293C>T	c.(292-294)CCT>CTT	p.P98L	GALNT2_uc010pvy.1_Missense_Mutation_p.P60L|GALNT2_uc010pvz.1_RNA	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	98	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				GGGCAGGACCCTTACGCCCGC	0.547													23	92					0	0	0.003954	0	0
KIAA1383	54627	broad.mit.edu	37	1	232943543	232943543	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:232943543C>T	uc001hvh.2	+	1	2906	c.2774C>T	c.(2773-2775)ACT>ATT	p.T925I		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	783	Ser-rich.									ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				ATTTCAAAGACTCAGGATAAA	0.363													18	39					0	0	0.007413	0	0
KIAA1804	84451	broad.mit.edu	37	1	233482338	233482338	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:233482338C>T	uc001hvt.3	+	2	1217	c.956C>T	c.(955-957)TCC>TTC	p.S319F	KIAA1804_uc001hvs.1_Missense_Mutation_p.S319F	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	319	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				ATCAAGTCTTCCTTGTTTTCT	0.478													5	18					0	0	0.000602	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514909	233514909	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:233514909G>A	uc001hvt.3	+	9	2418	c.2157G>A	c.(2155-2157)ACG>ACA	p.T719T	KIAA1804_uc001hvu.3_Silent_p.T165T	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	719					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GAAAGAAAACGGAGTCAGCTC	0.547													28	34					0	0	0.005443	0	0
SLC35F3	148641	broad.mit.edu	37	1	234455868	234455868	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:234455868G>A	uc001hwa.1	+	6	1193	c.965G>A	c.(964-966)GGA>GAA	p.G322E	SLC35F3_uc001hvy.1_Missense_Mutation_p.G391E	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	322	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TTAAATTTTGGAATTGCCGTT	0.403													12	43					0	0	0.000978	0	0
TARBP1	6894	broad.mit.edu	37	1	234595032	234595032	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:234595032G>A	uc001hwd.2	-	8	1576	c.1576C>T	c.(1576-1578)CTG>TTG	p.L526L		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	526					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			GCCCCTCTCAGGAGAATCTGA	0.373													10	52					0	0	0.001368	0	0
RYR2	6262	broad.mit.edu	37	1	237811866	237811866	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:237811866G>A	uc001hyl.1	+	49	7585	c.7465G>A	c.(7465-7467)GAG>AAG	p.E2489K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2489	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CCATCTTCTTGAGGTTGGCTT	0.512													5	14					0	0	0.001168	0	0
RYR2	6262	broad.mit.edu	37	1	237870339	237870339	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:237870339C>T	uc001hyl.1	+	68	9791	c.9671C>T	c.(9670-9672)TCC>TTC	p.S3224F	RYR2_uc010pxz.1_Missense_Mutation_p.S179F	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3224					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTAGCCGAGTCCGGCATTCGC	0.468													30	98					0	0	0.002445	0	0
RYR2	6262	broad.mit.edu	37	1	237947684	237947684	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:237947684G>A	uc001hyl.1	+	90	12792	c.12672G>A	c.(12670-12672)GAG>GAA	p.E4224E	RYR2_uc010pya.1_Silent_p.E639E	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4224					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCGAGAAGGAGAGGCCGGAAG	0.542													10	23					0	0	0.006214	0	0
RYR2	6262	broad.mit.edu	37	1	237947694	237947694	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:237947694G>A	uc001hyl.1	+	90	12802	c.12682G>A	c.(12682-12684)GAG>AAG	p.E4228K	RYR2_uc010pya.1_Missense_Mutation_p.E643K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4228					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAGGCCGGAAGAGCAGGGGCC	0.542													6	20					0	0	0.001168	0	0
FMN2	56776	broad.mit.edu	37	1	240492391	240492391	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:240492391G>A	uc010pyd.1	+	9	4456	c.4231G>A	c.(4231-4233)GAA>AAA	p.E1411K	FMN2_uc010pye.1_Missense_Mutation_p.E1415K|FMN2_uc010pyf.1_Missense_Mutation_p.E57K|FMN2_uc010pyg.1_Missense_Mutation_p.E7K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1411	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ACAGTCAGACGAACTCGAAAA	0.363													15	33					0	0	0.002450	0	0
PLD5	200150	broad.mit.edu	37	1	242253296	242253296	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:242253296C>T	uc001hzn.1	-	10	1598	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K	PLD5_uc001hzl.3_Missense_Mutation_p.E429K|PLD5_uc001hzm.3_Missense_Mutation_p.E281K|PLD5_uc001hzo.1_Missense_Mutation_p.E399K			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	491						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			CAGTCCCTTTCAAACACATCT	0.458													56	79					0	0	0.003610	0	0
C1orf101	257044	broad.mit.edu	37	1	244724036	244724036	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:244724036C>T	uc001iam.2	+	10	1155	c.1096C>T	c.(1096-1098)CTT>TTT	p.L366F	C1orf101_uc001iak.1_5'UTR|C1orf101_uc001ial.2_Missense_Mutation_p.L366F|C1orf101_uc010pym.1_Missense_Mutation_p.L215F|C1orf101_uc010pyn.1_Missense_Mutation_p.L299F	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	366	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			ATCCATTCTTCTTAAGTTTGC	0.393													18	24					0	0	0.006122	0	0
HNRNPU	3192	broad.mit.edu	37	1	245019892	245019892	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:245019892C>T	uc001iaz.1	-	10	1997	c.1779G>A	c.(1777-1779)ATG>ATA	p.M593I	HNRNPU_uc001iaw.1_RNA|HNRNPU_uc001iax.1_RNA|HNRNPU_uc001iay.1_Missense_Mutation_p.M317I|HNRNPU_uc001iba.1_Missense_Mutation_p.M574I|HNRNPU_uc001ibb.1_Missense_Mutation_p.M281I	NM_031844	NP_114032	Q00839	HNRPU_HUMAN	heterogeneous nuclear ribonucleoprotein U	593					CRD-mediated mRNA stabilization	catalytic step 2 spliceosome|cell surface|CRD-mediated mRNA stability complex|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	ATP binding|DNA binding|protein binding|RNA binding				0	all_cancers(71;6.97e-06)|all_epithelial(71;0.000104)|all_neural(11;0.0269)|Breast(184;0.0545)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0989)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.00868)			CAAACAGGCACATTTTTCTCC	0.373													30	33					0	0	0.008361	0	0
HNRNPU	3192	broad.mit.edu	37	1	245021405	245021405	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:245021405G>A	uc001iaz.1	-	7	1620	c.1402C>T	c.(1402-1404)CCA>TCA	p.P468S	HNRNPU_uc001iaw.1_RNA|HNRNPU_uc001iax.1_RNA|HNRNPU_uc001iay.1_Missense_Mutation_p.P192S|HNRNPU_uc001iba.1_Missense_Mutation_p.P449S|HNRNPU_uc001ibb.1_Missense_Mutation_p.P156S	NM_031844	NP_114032	Q00839	HNRPU_HUMAN	heterogeneous nuclear ribonucleoprotein U	468					CRD-mediated mRNA stabilization	catalytic step 2 spliceosome|cell surface|CRD-mediated mRNA stability complex|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	ATP binding|DNA binding|protein binding|RNA binding				0	all_cancers(71;6.97e-06)|all_epithelial(71;0.000104)|all_neural(11;0.0269)|Breast(184;0.0545)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0989)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.00868)			TCAGGTATTGGAAAATATGGC	0.448													7	23					0	0	0.001984	0	0
SMYD3	64754	broad.mit.edu	37	1	246027153	246027153	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:246027153C>T	uc001ibl.2	-	9	944	c.849G>A	c.(847-849)TGG>TGA	p.W283*	SMYD3_uc001ibk.2_Nonsense_Mutation_p.W224*|SMYD3_uc001ibi.2_Nonsense_Mutation_p.W94*|SMYD3_uc001ibj.2_Nonsense_Mutation_p.W94*	NM_022743	NP_073580	Q9H7B4	SMYD3_HUMAN	SET and MYND domain containing 3	283						cytoplasm|nucleus	histone-lysine N-methyltransferase activity|protein binding|zinc ion binding				0	all_cancers(71;0.000291)|all_epithelial(71;0.000174)|Ovarian(71;0.0377)|all_lung(81;0.0568)|Lung NSC(105;0.0804)|Breast(184;0.173)|Melanoma(84;0.242)	all_cancers(173;0.0496)|Acute lymphoblastic leukemia(190;0.164)	OV - Ovarian serous cystadenocarcinoma(106;0.0129)	all cancers(4;0.028)|GBM - Glioblastoma multiforme(49;0.0537)		GAACTTCCTTCCATACTTGCT	0.348													7	46					0	0	0.003080	0	0
OR2G3	81469	broad.mit.edu	37	1	247769766	247769766	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:247769766G>A	uc010pyz.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			ATACTTTAAGGAACAAGGATA	0.423													22	53					0	0	0.002780	0	0
OR13G1	441933	broad.mit.edu	37	1	247836033	247836033	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:247836033G>A	uc001idi.1	-	1	311	c.311C>T	c.(310-312)TCT>TTT	p.S104F		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AGCTCCCAGAGACCATGTGAA	0.458													10	29					0	0	0.001368	0	0
OR11L1	391189	broad.mit.edu	37	1	248004713	248004713	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:248004713C>T	uc001idn.1	-	1	486	c.486G>A	c.(484-486)ATG>ATA	p.M162I		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ACCTGGAAATCATCAGGGAAG	0.557													26	69					0	0	0.004656	0	0
OR2W3	343171	broad.mit.edu	37	1	248058951	248058951	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:248058951C>T	uc001idp.1	+	3	332	c.63C>T	c.(61-63)CCC>CCT	p.P21P	OR2W3_uc010pzb.1_Silent_p.P21P	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CTGACCGACCCCATCTGGAGA	0.527													7	48					0	0	0.003080	0	0
OR2L3	391192	broad.mit.edu	37	1	248224630	248224630	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:248224630C>T	uc001idx.1	+	1	647	c.647C>T	c.(646-648)TCC>TTC	p.S216F	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ATTTCATGTTCCTATGGCCGG	0.502													35	67					0	0	0.004878	0	0
OR2M2	391194	broad.mit.edu	37	1	248343642	248343642	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:248343642G>T	uc010pzf.1	+	1	355	c.355G>T	c.(355-357)GCT>TCT	p.A119S		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GGCTGTTATGGCTTATGACCG	0.418													47	188					2.13384e-23	2.3916e-23	0.003610	1	0
OR2M7	391196	broad.mit.edu	37	1	248487007	248487007	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:248487007G>A	uc010pzk.1	-	1	864	c.864C>T	c.(862-864)CTC>CTT	p.L288L		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGCTATAAATGAGAGGATTCA	0.423													12	48					0	0	0.000978	0	0
OR14C36	127066	broad.mit.edu	37	1	248512753	248512753	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:248512753T>A	uc010pzl.1	+	1	677	c.677T>A	c.(676-678)TTT>TAT	p.F226Y		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GTGCTCGGGTTTCCAAGAGGA	0.498													13	71					0	0	0.001855	0	0
OR2T34	127068	broad.mit.edu	37	1	248737121	248737121	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:248737121C>T	uc001iep.1	-	1	938	c.938G>A	c.(937-939)AGA>AAA	p.R313K		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	313	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTGGTTCATTCTTGACTGCAT	0.478													17	31					0	0	0.007413	0	0
PGBD2	267002	broad.mit.edu	37	1	249211020	249211020	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:249211020C>T	uc001ifh.2	+	3	384	c.237C>T	c.(235-237)GTC>GTT	p.V79V	PGBD2_uc001ifg.2_Intron|PGBD2_uc009xhd.2_Silent_p.V76V	NM_170725	NP_733843	Q6P3X8	PGBD2_HUMAN	hypothetical protein LOC267002 isoform a	79										ovary(1)	1	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.012)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			ATGCTTCAGTCCTGTGTGAGG	0.572													22	25					0	0	0.001882	0	0
DIP2C	22982	broad.mit.edu	37	10	430065	430065	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:430065G>A	uc001ifp.2	-	16	1868	c.1778C>T	c.(1777-1779)TCG>TTG	p.S593L	DIP2C_uc009xhj.1_Missense_Mutation_p.S289L	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	593						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CATATCCCTCGATTTCACACA	0.463													20	41					0	0	0.001882	0	0
DIP2C	22982	broad.mit.edu	37	10	486818	486819	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:486818_486819GG>AA	uc001ifp.2	-	4	476_477	c.386_387CC>TT	c.(385-387)ACC>ATT	p.T129I	DIP2C_uc009xhk.1_Missense_Mutation_p.P131F	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	129						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		TACCTGGAGGGGTGTAGGCGTC	0.584													18	41					0	0	0.004672	0	0
CALML3	810	broad.mit.edu	37	10	5567446	5567446	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:5567446G>A	uc001iie.1	+	1	523	c.398G>A	c.(397-399)GGA>GAA	p.G133E	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	133	4.|EF-hand 4.						calcium ion binding				0						GACACGGACGGAGACGGACAG	0.672													8	30					0	0	0.003080	0	0
ITIH2	3698	broad.mit.edu	37	10	7772068	7772068	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:7772068G>A	uc001ijs.2	+	12	1595	c.1433G>A	c.(1432-1434)GGA>GAA	p.G478E		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	478					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						AGGATTTATGGAAACCAGGAC	0.368													24	57					0	0	0.005443	0	0
ATP5C1	509	broad.mit.edu	37	10	7841754	7841754	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:7841754C>A	uc001iju.2	+	5	526	c.448C>A	c.(448-450)CTG>ATG	p.L150M	ATP5C1_uc009xiq.1_Missense_Mutation_p.L150M|ATP5C1_uc010qbc.1_Missense_Mutation_p.L101M|ATP5C1_uc001ijv.2_Missense_Mutation_p.L150M	NM_001001973	NP_001001973	P36542	ATPG_HUMAN	ATP synthase, H+ transporting, mitochondrial F1	150					oxidative phosphorylation|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						TGACCAGTTTCTGGTGGCATT	0.423													23	43					1.87028e-06	2.07557e-06	0.001882	1	0
DHTKD1	55526	broad.mit.edu	37	10	12155038	12155038	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:12155038C>T	uc001ild.3	+	13	2393	c.2294C>T	c.(2293-2295)TCC>TTC	p.S765F		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	765					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			ATTGTTGCTTCCCCTAAGATG	0.443													143	282					0	0	0.003610	0	0
SEPHS1	22929	broad.mit.edu	37	10	13380732	13380732	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:13380732G>A	uc001imk.2	-	3	629	c.270C>T	c.(268-270)TAC>TAT	p.Y90Y	SEPHS1_uc001imh.2_5'Flank|SEPHS1_uc010qbs.1_Silent_p.Y42Y|SEPHS1_uc001imi.2_Silent_p.Y90Y|SEPHS1_uc001imj.2_Silent_p.Y90Y|SEPHS1_uc010qbt.1_Silent_p.Y23Y|SEPHS1_uc009xje.2_Silent_p.Y90Y	NM_012247	NP_036379	P49903	SPS1_HUMAN	selenophosphate synthetase 1	90					protein modification process		ATP binding|GTP binding|selenide, water dikinase activity			skin(1)	1						CTACGATCGGGTAAATGTAAT	0.468													37	107					0	0	0.008740	0	0
SUV39H2	79723	broad.mit.edu	37	10	14939205	14939205	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:14939205G>A	uc001inh.2	+	2	414	c.358G>A	c.(358-360)GGA>AGA	p.G120R	SUV39H2_uc001ing.2_Intron|SUV39H2_uc001ini.2_Missense_Mutation_p.G120R|SUV39H2_uc001inj.2_Missense_Mutation_p.G120R	NM_024670	NP_078946	Q9H5I1	SUV92_HUMAN	suppressor of variegation 3-9 homolog 2	180					cell cycle|cell differentiation|chromatin assembly or disassembly|chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin|chromosome, centromeric region|nucleus	histone methyltransferase activity (H3-K9 specific)|protein binding|zinc ion binding			breast(2)|ovary(1)	3						ACCAGCTCCTGGAATCAGCTT	0.368													32	60					0	0	0.003271	0	0
FAM171A1	221061	broad.mit.edu	37	10	15254982	15254982	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:15254982C>T	uc001iob.2	-	8	2612	c.2605G>A	c.(2605-2607)GGA>AGA	p.G869R		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	869	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TTGTCTTCTCCTTGGTCATCA	0.557													53	124					0	0	0.003610	0	0
PTER	9317	broad.mit.edu	37	10	16526508	16526508	+	Missense_Mutation	SNP	C	T	T	rs141767754	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:16526508C>T	uc001iog.1	+	3	332	c.125C>T	c.(124-126)CCG>CTG	p.P42L	PTER_uc001ioh.1_Missense_Mutation_p.P42L|PTER_uc001ioi.1_Missense_Mutation_p.P42L|PTER_uc009xjp.1_Missense_Mutation_p.P42L	NM_030664	NP_109589	Q96BW5	PTER_HUMAN	phosphotriesterase related	42					catabolic process		hydrolase activity, acting on ester bonds|zinc ion binding			ovary(2)	2						CCACCTCCCCCGTGCCAGGAA	0.453													18	65					0	0	0.006122	0	0
CUBN	8029	broad.mit.edu	37	10	16932473	16932473	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:16932473C>T	uc001ioo.2	-	55	8704	c.8652G>A	c.(8650-8652)GGG>GGA	p.G2884G	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_Silent_p.G240G	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2884	CUB 21.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GAGCCACGTTCCCACAGCCAG	0.552													23	59					0	0	0.002780	0	0
CUBN	8029	broad.mit.edu	37	10	16979614	16979614	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:16979614C>T	uc001ioo.2	-	39	5955	c.5903G>A	c.(5902-5904)GGT>GAT	p.G1968D		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1968					cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGGTAAAACACCATCAGGTGC	0.413													8	22					0	0	0.004482	0	0
CUBN	8029	broad.mit.edu	37	10	17156031	17156031	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:17156031G>A	uc001ioo.2	-	8	930	c.878C>T	c.(877-879)CCA>CTA	p.P293L		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	293	EGF-like 3; calcium-binding (Potential).				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TGTACCTGTTGGACAGGCCCC	0.527													5	8					0	0	0.001984	0	0
NEBL	10529	broad.mit.edu	37	10	21120197	21120197	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:21120197C>T	uc001iqi.2	-	16	1996	c.1599G>A	c.(1597-1599)GGG>GGA	p.G533G	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	533	Nebulin 14.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GCATTCCTTTCCCTTTAATTT	0.353													21	50					0	0	0.001882	0	0
PRTFDC1	56952	broad.mit.edu	37	10	25226281	25226281	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:25226281G>A	uc001ise.1	-	3	200	c.171C>T	c.(169-171)GCC>GCT	p.A57A	PRTFDC1_uc010qdd.1_Silent_p.A57A|PRTFDC1_uc001isf.1_RNA|PRTFDC1_uc009xkm.1_RNA	NM_020200	NP_064585	Q9NRG1	PRDC1_HUMAN	phosphoribosyl transferase domain containing 1	57					adenine salvage|central nervous system neuron development|cerebral cortex neuron differentiation|cytolysis|dendrite morphogenesis|GMP salvage|grooming behavior|hypoxanthine metabolic process|IMP salvage|lymphocyte proliferation|positive regulation of dopamine metabolic process|purine ribonucleoside salvage|response to amphetamine|striatum development	cytosol	hypoxanthine phosphoribosyltransferase activity|magnesium ion binding|nucleotide binding|protein homodimerization activity			ovary(1)	1						TAATATCCTTGGCCAGCCGCT	0.368													10	42					0	0	0.000978	0	0
GPR158	57512	broad.mit.edu	37	10	25701188	25701188	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:25701188C>T	uc001isj.2	+	4	1181	c.1121C>T	c.(1120-1122)CCG>CTG	p.P374L		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	374	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GGAAGGGGTCCGGATCAGCAT	0.468													35	91					0	0	0.004289	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687360	27687360	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:27687360G>A	uc001itu.2	-	4	2285	c.2167C>T	c.(2167-2169)CCT>TCT	p.P723S		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	723					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AAAAAATCAGGAATATTGTTC	0.299													19	30					0	0	0.007413	0	0
ARMC4	55130	broad.mit.edu	37	10	28229547	28229547	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:28229547G>A	uc009xky.2	-	13	2029	c.1931C>T	c.(1930-1932)TCT>TTT	p.S644F	ARMC4_uc010qds.1_Missense_Mutation_p.S169F|ARMC4_uc010qdt.1_Missense_Mutation_p.S336F|ARMC4_uc001itz.2_Missense_Mutation_p.S644F|ARMC4_uc010qdu.1_Missense_Mutation_p.S336F	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	644	ARM 3.						binding			ovary(4)|skin(2)	6						GTTTTCATGAGAAGTCTTCAG	0.512													17	90					0	0	0.004007	0	0
ARMC4	55130	broad.mit.edu	37	10	28270487	28270487	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:28270487C>G	uc009xky.2	-	7	942	c.844G>C	c.(844-846)GTT>CTT	p.V282L	ARMC4_uc010qds.1_5'UTR|ARMC4_uc010qdt.1_5'UTR|ARMC4_uc001itz.2_Missense_Mutation_p.V282L|ARMC4_uc010qdu.1_5'UTR	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	282							binding			ovary(4)|skin(2)	6						TCATAATTAACGTCCCCTTCA	0.294													35	110					0	0	0.008740	0	0
MPP7	143098	broad.mit.edu	37	10	28348640	28348640	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:28348640C>T	uc001iua.1	-	16	1641	c.1237G>A	c.(1237-1239)GAT>AAT	p.D413N	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.D413N|MPP7_uc009xla.2_Missense_Mutation_p.D413N|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	413	Guanylate kinase-like.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TCAACACCATCACTCTCCTGG	0.343													13	43					0	0	0.001855	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315425	30315425	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:30315425G>A	uc001iux.2	-	2	3711	c.3652C>T	c.(3652-3654)CAT>TAT	p.H1218Y	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.H1080Y|KIAA1462_uc009xle.1_Missense_Mutation_p.H1218Y	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1218										ovary(4)	4						TCTACAAAATGGAATAAAGTG	0.493													49	105					0	0	0.003610	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317025	30317025	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:30317025G>A	uc001iux.2	-	2	2111	c.2052C>T	c.(2050-2052)CAC>CAT	p.H684H	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.H546H|KIAA1462_uc009xle.1_Silent_p.H684H	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	684										ovary(4)	4						CTCTGTACCGGTGCCCTGGCC	0.527													29	58					0	0	0.007291	0	0
NRP1	8829	broad.mit.edu	37	10	33475384	33475384	+	Missense_Mutation	SNP	C	T	T	rs139081795		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:33475384C>T	uc001iwx.3	-	14	2618	c.2095G>A	c.(2095-2097)GAA>AAA	p.E699K	NRP1_uc001iwv.3_Missense_Mutation_p.E699K|NRP1_uc009xlz.2_Missense_Mutation_p.E693K|NRP1_uc001iww.3_Missense_Mutation_p.E511K|NRP1_uc001iwy.3_Missense_Mutation_p.E692K	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	699	Extracellular (Potential).|MAM.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TTCTGATTTTCGTCAGCTTGG	0.493													22	53					0	0	0.003330	0	0
CREM	1390	broad.mit.edu	37	10	35437404	35437404	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:35437404C>T	uc001iyb.2	+	3	315	c.153C>T	c.(151-153)ATC>ATT	p.I51I	CREM_uc001ixx.2_Silent_p.I35I|CREM_uc001ixy.2_Intron|CREM_uc001ixz.2_Intron|CREM_uc001iya.2_Silent_p.I51I|CREM_uc001iyc.2_Silent_p.I35I|CREM_uc001iyd.2_Silent_p.I51I|CREM_uc001iye.2_Silent_p.I51I	NM_181571	NP_853549	Q03060	CREM_HUMAN	cAMP responsive element modulator isoform a	51					cell differentiation|multicellular organismal development|signal transduction|spermatogenesis	nucleus	cAMP response element binding protein binding|protein binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AAAATTCAATCCCTGCTTTAG	0.428													18	41					0	0	0.007413	0	0
FXYD4	53828	broad.mit.edu	37	10	43871008	43871008	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:43871008C>T	uc001jaq.1	+	6	491	c.159C>T	c.(157-159)ATC>ATT	p.I53I		NM_173160	NP_775183	P59646	FXYD4_HUMAN	FXYD domain containing ion transport regulator 4	53	Helical; (Potential).					integral to membrane					0						TTGCTGGGATCGCGGCAGTTC	0.627													21	28					0	0	0.001882	0	0
RASSF4	83937	broad.mit.edu	37	10	45479559	45479559	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:45479559C>T	uc001jbo.2	+	5	505	c.371C>T	c.(370-372)TCG>TTG	p.S124L	RASSF4_uc001jbp.2_Missense_Mutation_p.S155L|RASSF4_uc009xmn.2_Missense_Mutation_p.S54L|RASSF4_uc001jbq.2_Intron|RASSF4_uc001jbt.2_Missense_Mutation_p.S81L	NM_032023	NP_114412	Q9H2L5	RASF4_HUMAN	Ras association domain family 4	124					cell cycle|signal transduction		protein binding			large_intestine(1)	1						ACAGACAGCTCGGGTAAGCGG	0.597													3	5					0	0	0.009096	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999848	46999848	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:46999848C>G	uc001jec.2	+	3	1103	c.968C>G	c.(967-969)GCC>GGC	p.A323G	GPRIN2_uc010qfq.1_Missense_Mutation_p.A86G	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	323											0						AATGACTTGGCCCCTGCAGAG	0.647													14	46					0	0	0.004007	0	0
RBP3	5949	broad.mit.edu	37	10	48390440	48390440	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:48390440C>T	uc001jez.2	-	1	552	c.438G>A	c.(436-438)ATG>ATA	p.M146I		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	146	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	ACTCCCCCATCATGCTCAGCA	0.647													38	34					0	0	0.004878	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49667782	49667782	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:49667782G>A	uc001jgt.2	-	5	901	c.604C>T	c.(604-606)CTG>TTG	p.L202L	ARHGAP22_uc001jgs.2_Silent_p.L112L|ARHGAP22_uc001jgu.2_Silent_p.L218L|ARHGAP22_uc010qgl.1_Silent_p.L159L|ARHGAP22_uc010qgm.1_Silent_p.L208L|ARHGAP22_uc001jgv.2_5'UTR	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	202	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						TCCCTCACCAGGTTGGCCTGG	0.632													59	66					0	0	0.003610	0	0
C10orf71	118461	broad.mit.edu	37	10	50532237	50532237	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:50532237G>A	uc010qgp.1	+	3	1986	c.1647G>A	c.(1645-1647)GAG>GAA	p.E549E		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	549											0						ATGGGCTTGAGGAAAGCCCTC	0.517													10	16					0	0	0.008291	0	0
OGDHL	55753	broad.mit.edu	37	10	50944403	50944403	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:50944403C>T	uc001jie.2	-	21	2896	c.2754G>A	c.(2752-2754)CAG>CAA	p.Q918Q	OGDHL_uc009xog.2_Silent_p.Q945Q|OGDHL_uc010qgt.1_Silent_p.Q861Q|OGDHL_uc010qgu.1_Silent_p.Q709Q	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	918					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TCAGGCACACCTGCTCCAGGC	0.617													32	45					0	0	0.009535	0	0
AGAP7	653268	broad.mit.edu	37	10	51465424	51465424	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:51465424C>T	uc001jio.2	-	7	1158	c.1032G>A	c.(1030-1032)ATG>ATA	p.M344I	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	344	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GCCCGGTGTCCATGTCCTTGG	0.552													83	91					0	0	0.003610	0	0
PCDH15	65217	broad.mit.edu	37	10	55582354	55582354	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:55582354G>A	uc001jju.1	-	33	5527	c.5132C>T	c.(5131-5133)TCA>TTA	p.S1711L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.S1708L|PCDH15_uc010qhw.1_Missense_Mutation_p.S1671L|PCDH15_uc010qhx.1_Missense_Mutation_p.S1642L|PCDH15_uc010qhy.1_Missense_Mutation_p.S1718L|PCDH15_uc010qhz.1_Missense_Mutation_p.S1713L|PCDH15_uc010qia.1_Missense_Mutation_p.S1691L|PCDH15_uc010qib.1_Missense_Mutation_p.S1688L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1711	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CCTAGAGAGTGAAGAATGTAA	0.398										HNSCC(58;0.16)			10	17					0	0	0.006214	0	0
PCDH15	65217	broad.mit.edu	37	10	55698675	55698675	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:55698675C>T	uc001jju.1	-	25	3668	c.3273G>A	c.(3271-3273)GTG>GTA	p.V1091V	PCDH15_uc010qhq.1_Silent_p.V1096V|PCDH15_uc010qhr.1_Silent_p.V1091V|PCDH15_uc010qhs.1_Silent_p.V1103V|PCDH15_uc010qht.1_Silent_p.V1098V|PCDH15_uc010qhu.1_Silent_p.V1091V|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.V1091V|PCDH15_uc010qhw.1_Silent_p.V1054V|PCDH15_uc010qhx.1_Silent_p.V1020V|PCDH15_uc010qhy.1_Silent_p.V1096V|PCDH15_uc010qhz.1_Silent_p.V1091V|PCDH15_uc010qia.1_Silent_p.V1069V|PCDH15_uc010qib.1_Silent_p.V1069V	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1091	Cadherin 10.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GAGGTCCATTCACATAGATAA	0.383										HNSCC(58;0.16)			18	20					0	0	0.010504	0	0
PCDH15	65217	broad.mit.edu	37	10	55912930	55912930	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:55912930C>T	uc001jju.1	-	14	2109	c.1714G>A	c.(1714-1716)GAA>AAA	p.E572K	PCDH15_uc010qhq.1_Missense_Mutation_p.E577K|PCDH15_uc010qhr.1_Missense_Mutation_p.E572K|PCDH15_uc010qhs.1_Missense_Mutation_p.E584K|PCDH15_uc010qht.1_Missense_Mutation_p.E579K|PCDH15_uc010qhu.1_Missense_Mutation_p.E572K|PCDH15_uc001jjv.1_Missense_Mutation_p.E550K|PCDH15_uc010qhv.1_Missense_Mutation_p.E572K|PCDH15_uc010qhw.1_Missense_Mutation_p.E535K|PCDH15_uc010qhx.1_Missense_Mutation_p.E572K|PCDH15_uc010qhy.1_Missense_Mutation_p.E577K|PCDH15_uc010qhz.1_Missense_Mutation_p.E572K|PCDH15_uc010qia.1_Missense_Mutation_p.E550K|PCDH15_uc010qib.1_Missense_Mutation_p.E550K|PCDH15_uc001jjw.2_Missense_Mutation_p.E572K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	572	Cadherin 5.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACTATCATTTCCACCCCTGGA	0.478										HNSCC(58;0.16)			24	35					0	0	0.003330	0	0
UBE2D1	7321	broad.mit.edu	37	10	60123403	60123403	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:60123403T>C	uc001jke.1	+	4	378	c.155T>C	c.(154-156)CTC>CCC	p.L52P		NM_003338	NP_003329	P51668	UB2D1_HUMAN	ubiquitin-conjugating enzyme E2D 1	52					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|BMP signaling pathway|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K48-linked ubiquitination|transforming growth factor beta receptor signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|ubiquitin-protein ligase activity			skin(2)	2						GTCTTCTTTCTCACTGTACAT	0.294													13	12					0	0	0.006122	0	0
SLC16A9	220963	broad.mit.edu	37	10	61413644	61413644	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:61413644G>A	uc010qig.1	-	5	1589	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	380	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						GGCCCATGATGATTAAGGTAG	0.418													26	22					0	0	0.003954	0	0
ANK3	288	broad.mit.edu	37	10	61833102	61833102	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:61833102C>T	uc001jky.2	-	37	7729	c.7537G>A	c.(7537-7539)GAA>AAA	p.E2513K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2513					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAGAGAATTTCTTTTTTGGGG	0.418													29	41					0	0	0.002445	0	0
MYPN	84665	broad.mit.edu	37	10	69926302	69926302	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:69926302G>A	uc001jnm.3	+	11	2037	c.1852G>A	c.(1852-1854)GTG>ATG	p.V618M	MYPN_uc001jnl.1_Missense_Mutation_p.V618M|MYPN_uc001jnn.3_Missense_Mutation_p.V343M|MYPN_uc001jno.3_Missense_Mutation_p.V618M|MYPN_uc009xps.2_Missense_Mutation_p.V618M|MYPN_uc009xpt.2_Missense_Mutation_p.V618M|MYPN_uc010qit.1_Missense_Mutation_p.V324M|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	618						nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GGCTGGTGTGGTGACCACCAG	0.577													22	24					0	0	0.002780	0	0
AIFM2	84883	broad.mit.edu	37	10	71874039	71874039	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:71874039G>A	uc010qjg.1	-	8	1030	c.1017C>T	c.(1015-1017)GGC>GGT	p.G339G	AIFM2_uc001jqp.1_Silent_p.G339G	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	339					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						CACTGATTTGGCCCACACCGT	0.577													22	15					0	0	0.001882	0	0
PPP3CB	5532	broad.mit.edu	37	10	75238270	75238270	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:75238270T>A	uc001jue.2	-	3	533	c.398A>T	c.(397-399)TAT>TTT	p.Y133F	PPP3CB_uc001juf.2_Missense_Mutation_p.Y133F|PPP3CB_uc001jug.2_Missense_Mutation_p.Y133F|PPP3CB_uc001jui.2_Missense_Mutation_p.Y133F|PPP3CB_uc001juh.2_Missense_Mutation_p.Y47F	NM_021132	NP_066955	P16298	PP2BB_HUMAN	protein phosphatase 3, catalytic subunit, beta	133	Catalytic.									skin(1)	1	Prostate(51;0.0119)					TATACTAAAATAACCTCTGTC	0.348													22	43					0	0	0.002299	0	0
MYOZ1	58529	broad.mit.edu	37	10	75399722	75399722	+	Silent	SNP	C	T	T	rs113054407	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:75399722C>T	uc001jur.2	-	2	419	c.54G>A	c.(52-54)CTG>CTA	p.L18L		NM_021245	NP_067068	Q9NP98	MYOZ1_HUMAN	myozenin 1	18					myofibril assembly	nucleus|pseudopodium	FATZ binding			ovary(2)	2	Prostate(51;0.0112)					GTTCCATGATCAGCTTGCTGG	0.502													28	35					0	0	0.006320	0	0
PLAU	5328	broad.mit.edu	37	10	75676277	75676277	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:75676277C>T	uc001jwa.2	+	11	1396	c.1250C>T	c.(1249-1251)CCC>CTC	p.P417L	C10orf55_uc001jvz.1_5'UTR|PLAU_uc010qkw.1_Missense_Mutation_p.P400L|PLAU_uc010qkx.1_Missense_Mutation_p.P331L|PLAU_uc001jwb.2_RNA|PLAU_uc001jwc.2_Missense_Mutation_p.P417L|PLAU_uc009xrq.1_Missense_Mutation_p.P381L	NM_002658	NP_002649	P00749	UROK_HUMAN	plasminogen activator, urokinase isoform 1	417	Peptidase S1.				blood coagulation|chemotaxis|fibrinolysis|proteolysis|regulation of cell adhesion mediated by integrin|regulation of receptor activity|regulation of smooth muscle cell migration|regulation of smooth muscle cell-matrix adhesion|signal transduction	cell surface|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(2)|kidney(1)	3	Prostate(51;0.0112)				Amiloride(DB00594)|Urokinase(DB00013)	CACTTCTTACCCTGGATCCGC	0.572													4	13					0	0	0.001168	0	0
VCL	7414	broad.mit.edu	37	10	75867093	75867093	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:75867093C>T	uc001jwd.2	+	17	2634	c.2540C>T	c.(2539-2541)CCA>CTA	p.P847L	VCL_uc009xrr.2_Missense_Mutation_p.P596L|VCL_uc010qky.1_Missense_Mutation_p.P754L|VCL_uc001jwe.2_Missense_Mutation_p.P847L|VCL_uc010qkz.1_Intron	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	847	Linker (Pro-rich).|Pro-rich.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					CCGCCTCCACCAGACCTTGAA	0.502													15	32					0	0	0.004990	0	0
SFTPA1	653509	broad.mit.edu	37	10	81372115	81372115	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:81372115G>A	uc001kap.2	+	4	341	c.220G>A	c.(220-222)GGG>AGG	p.G74R	SFTPA1_uc001kaq.2_Missense_Mutation_p.G74R|SFTPA1_uc009xry.2_Missense_Mutation_p.G89R|SFTPA1_uc001kar.2_Missense_Mutation_p.G74R|SFTPA1_uc010qlt.1_Missense_Mutation_p.G15R|SFTPA1_uc009xrz.2_Intron|SFTPA1_uc009xsa.2_Missense_Mutation_p.G74R|SFTPA1_uc009xsf.2_5'Flank	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	74	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			TGGAAATGATGGGCTGCCTGG	0.612													72	99					0	0	0.003610	0	0
C10orf58	84293	broad.mit.edu	37	10	82187231	82187231	+	Silent	SNP	C	T	T	rs150904688	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:82187231C>T	uc001kcc.3	+	5	715	c.555C>T	c.(553-555)TTC>TTT	p.F185F	C10orf58_uc001kcd.3_Silent_p.F174F|C10orf58_uc001kce.3_Silent_p.F185F|C10orf58_uc001kcf.3_Silent_p.F185F	NM_032333	NP_115709	Q9BRX8	CJ058_HUMAN	hypothetical protein LOC84293 precursor	185						extracellular region					0			Colorectal(32;0.229)			GGGGAGTTTTCGTGGTGGGAT	0.522													16	28					0	0	0.007413	0	0
GRID1	2894	broad.mit.edu	37	10	87966200	87966200	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:87966200G>A	uc001kdl.1	-	3	542	c.441C>T	c.(439-441)GTC>GTT	p.V147V	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	147	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CATTGAGGCGGACGGGTGGTC	0.622										Multiple Myeloma(13;0.14)			20	20					0	0	0.010504	0	0
BMPR1A	657	broad.mit.edu	37	10	88683459	88683459	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:88683459C>T	uc001kdy.2	+	13	2130	c.1582C>T	c.(1582-1584)CAA>TAA	p.Q528*	BMPR1A_uc001kdz.2_Nonsense_Mutation_p.Q69*	NM_004329	NP_004320	P36894	BMR1A_HUMAN	bone morphogenetic protein receptor, type IA	528	Cytoplasmic (Potential).				BMP signaling pathway|immune response|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	integral to membrane|plasma membrane	ATP binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta receptor activity			lung(3)|large_intestine(1)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	8						GGTTGAATCCCAAGATGTAAA	0.438			Mis|N|F			gastrointestinal polyps			Hereditary_Mixed_Polyposis_syndrome_type_2|Juvenile_Polyposis				15	21					0	0	0.004990	0	0
RNLS	55328	broad.mit.edu	37	10	90074264	90074264	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:90074264G>A	uc001kfe.2	-	6	970	c.835C>T	c.(835-837)CAG>TAG	p.Q279*	RNLS_uc010qms.1_Nonsense_Mutation_p.Q196*|RNLS_uc001kfd.2_Nonsense_Mutation_p.Q279*|RNLS_uc009xtj.2_Nonsense_Mutation_p.Q111*	NM_001031709	NP_001026879	Q5VYX0	RNLS_HUMAN	renalase isoform 1	279						extracellular region	oxidoreductase activity			ovary(1)	1						GCAATTGGCTGAGGCAAACCC	0.438													34	32					0	0	0.005524	0	0
LIPK	643414	broad.mit.edu	37	10	90497476	90497476	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:90497476C>T	uc010qmv.1	+	6	754	c.754C>T	c.(754-756)CGT>TGT	p.R252C		NM_001080518	NP_001073987	Q5VXJ0	LIPK_HUMAN	lipase, family member K precursor	252					lipid catabolic process	extracellular region	hydrolase activity			ovary(2)	2		Colorectal(252;0.0381)		Colorectal(12;7.03e-05)|COAD - Colon adenocarcinoma(12;8.33e-05)		AAAGCTATTCCGTCGTATTTG	0.373													54	94					0	0	0.003610	0	0
LGI1	9211	broad.mit.edu	37	10	95517914	95517914	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:95517914A>T	uc001kjc.3	+	1	349	c.13A>T	c.(13-15)AGA>TGA	p.R5*	LGI1_uc010qnv.1_Nonsense_Mutation_p.R5*|LGI1_uc001kjd.3_Nonsense_Mutation_p.R5*|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	5					axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				GGAATCAGAAAGAAGCAAAAG	0.443													6	21					0	0	0.003080	0	0
PLCE1	51196	broad.mit.edu	37	10	95790885	95790885	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:95790885G>A	uc001kjk.2	+	2	716	c.82G>A	c.(82-84)GAA>AAA	p.E28K	PLCE1_uc010qnx.1_Missense_Mutation_p.E28K	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	28					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GGCTGCAGATGAAAGTAGTGA	0.423													15	19					0	0	0.003163	0	0
PLCE1	51196	broad.mit.edu	37	10	96073108	96073108	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:96073108G>A	uc001kjk.2	+	28	6735	c.6101G>A	c.(6100-6102)GGA>GAA	p.G2034E	PLCE1_uc010qnx.1_Missense_Mutation_p.G2018E|PLCE1_uc001kjm.2_Missense_Mutation_p.G1726E|PLCE1_uc001kjp.2_Missense_Mutation_p.G392E	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	2034	Ras-associating 1.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACTATTAATGGAGGCACCAAG	0.453													41	68					0	0	0.003214	0	0
PLCE1	51196	broad.mit.edu	37	10	96081674	96081675	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:96081674_96081675AC>TT	uc001kjk.2	+	30	6993_6994	c.6359_6360AC>TT	c.(6358-6360)AAC>ATT	p.N2120I	PLCE1_uc010qnx.1_Missense_Mutation_p.N2104I|PLCE1_uc001kjm.2_Missense_Mutation_p.N1812I|PLCE1_uc001kjp.2_Missense_Mutation_p.N478I	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	2120					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GAAGAGAAAAACATTGTTCAAG	0.356													9	10					0	0	0.004672	0	0
CYP2C18	1562	broad.mit.edu	37	10	96454799	96454799	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:96454799G>A	uc001kjv.3	+	4	933	c.607G>A	c.(607-609)GAA>AAA	p.E203K	CYP2C18_uc001kjw.3_Missense_Mutation_p.E203K|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	203					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		AAAATTCAATGAAAACCTCAG	0.378													8	19					0	0	0.004482	0	0
CYP2C19	1557	broad.mit.edu	37	10	96541593	96541593	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:96541593C>T	uc010qnz.1	+	5	658	c.658C>T	c.(658-660)CCC>TCC	p.P220S	CYP2C19_uc009xus.1_Missense_Mutation_p.P85S|CYP2C19_uc010qny.1_Missense_Mutation_p.P198S	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	220					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CAATAATTTTCCCACTATCAT	0.274													14	12					0	0	0.004990	0	0
CYP2C8	1558	broad.mit.edu	37	10	96818118	96818118	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:96818118C>T	uc001kkb.2	-	5	888	c.793G>A	c.(793-795)GAT>AAT	p.D265N	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.D195N|CYP2C8_uc010qob.1_Missense_Mutation_p.D179N|CYP2C8_uc010qoc.1_Missense_Mutation_p.D163N|CYP2C8_uc010qod.1_Missense_Mutation_p.D179N	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	265					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	AGGAAGCAATCGATAAAGTCC	0.358													21	29					0	0	0.002780	0	0
SLIT1	6585	broad.mit.edu	37	10	98806450	98806450	+	Missense_Mutation	SNP	C	T	T	rs147332825		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:98806450C>T	uc001kmw.2	-	18	2066	c.1814G>A	c.(1813-1815)CGG>CAG	p.R605Q	SLIT1_uc009xvh.1_Missense_Mutation_p.R615Q	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	605	LRR 14.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CATGCCGCTCCGGATGGACTC	0.622													9	16					0	0	0.006214	0	0
HPS1	3257	broad.mit.edu	37	10	100183371	100183371	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:100183371G>A	uc010qpf.1	-	16	1833	c.1587C>T	c.(1585-1587)ATC>ATT	p.I529I	HPS1_uc001kpi.1_Silent_p.I529I|HPS1_uc001kpj.1_Silent_p.I436I|HPS1_uc001kpk.1_Silent_p.I353I|HPS1_uc010qpg.1_Silent_p.I149I|HPS1_uc009xwb.2_RNA	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	529					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		ACACCATGGTGATGTTCCTCC	0.617									Hermansky-Pudlak_syndrome				91	89					0	0	0.003610	0	0
DNMBP	23268	broad.mit.edu	37	10	101715817	101715817	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:101715817G>A	uc001kqj.2	-	4	1506	c.1414C>T	c.(1414-1416)CAG>TAG	p.Q472*	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	472					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		ACTGGCTTCTGAAGAGTTTTT	0.488													43	56					0	0	0.002522	0	0
NT5C2	22978	broad.mit.edu	37	10	104859732	104859732	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:104859732C>T	uc001kwo.2	-	9	770	c.584G>A	c.(583-585)CGG>CAG	p.R195Q	NT5C2_uc010qqp.1_Missense_Mutation_p.R166Q|NT5C2_uc001kwq.2_Missense_Mutation_p.R195Q|NT5C2_uc001kwp.2_Missense_Mutation_p.R42Q	NM_012229	NP_036361	P49902	5NTC_HUMAN	5'-nucleotidase, cytosolic II	195					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|metal ion binding|nucleotide binding|protein binding				0		all_hematologic(284;0.176)|Colorectal(252;0.178)		Epithelial(162;1.33e-08)|all cancers(201;1.04e-07)|BRCA - Breast invasive adenocarcinoma(275;0.159)	Adenosine triphosphate(DB00171)|Ribavirin(DB00811)	GAACATACTCCGGTAGGACAT	0.398													35	45					0	0	0.005524	0	0
NEURL	9148	broad.mit.edu	37	10	105331498	105331498	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:105331498T>C	uc001kxh.2	+	3	978	c.568T>C	c.(568-570)TTC>CTC	p.F190L		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	190	NHR 1.				nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		TGTTATGCTGTTCTTCAGCGG	0.642													26	34					0	0	0.008361	0	0
COL17A1	1308	broad.mit.edu	37	10	105819447	105819447	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:105819447C>T	uc001kxr.2	-	15	1340	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K	COL17A1_uc010qqv.1_Missense_Mutation_p.E375K	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	391	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GCTTGCTTTTCTTTTTTTAGG	0.438													15	36					0	0	0.001882	0	0
C10orf79	80217	broad.mit.edu	37	10	105920862	105920862	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:105920862C>T	uc001kxw.2	-	27	3589	c.3473G>A	c.(3472-3474)AGA>AAA	p.R1158K	C10orf79_uc009xxq.2_Missense_Mutation_p.R466K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1158	Potential.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		GAATTGTTTTCTTTCTTCTTC	0.328													17	12					0	0	0.004990	0	0
CCDC147	159686	broad.mit.edu	37	10	106130806	106130806	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:106130806G>A	uc001kyh.2	+	7	1218	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	362	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		TGTGGGATTAGAGAGAGGTAA	0.373													7	10					0	0	0.003080	0	0
SORCS3	22986	broad.mit.edu	37	10	107022146	107022146	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:107022146G>A	uc001kyi.1	+	26	3728	c.3501G>A	c.(3499-3501)ATG>ATA	p.M1167I		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1167	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGCAGGAGATGATTGGGTCAG	0.498													14	22					0	0	0.002450	0	0
ACSL5	51703	broad.mit.edu	37	10	114164293	114164293	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:114164293G>A	uc001kzs.2	+	4	431	c.290G>A	c.(289-291)AGA>AAA	p.R97K	ACSL5_uc001kzt.2_Missense_Mutation_p.R97K|ACSL5_uc001kzu.2_Missense_Mutation_p.R153K|ACSL5_uc009xxz.2_Missense_Mutation_p.R97K	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	97	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		TTGGGATATAGAAAACCAAAC	0.368													8	11					0	0	0.006214	0	0
NRAP	4892	broad.mit.edu	37	10	115391667	115391667	+	Silent	SNP	C	T	T	rs139136683		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:115391667C>T	uc001laj.2	-	17	1853	c.1689G>A	c.(1687-1689)CTG>CTA	p.L563L	NRAP_uc009xyb.2_5'Flank|NRAP_uc001lak.2_Silent_p.L528L|NRAP_uc001lal.3_Silent_p.L563L	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	563	Nebulin 13.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		ACATGGCATCCAGCTTCATCT	0.443													50	48					0	0	0.003610	0	0
FAM160B1	57700	broad.mit.edu	37	10	116602693	116602693	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:116602693A>T	uc001lcb.2	+	6	859	c.524A>T	c.(523-525)AAT>ATT	p.N175I	FAM160B1_uc001lcc.2_Missense_Mutation_p.N175I	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	175										lung(1)	1						CCTTTTCAGAATAAGATGAAA	0.308													8	7					0	0	0.003080	0	0
PNLIP	5406	broad.mit.edu	37	10	118314748	118314748	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:118314748C>T	uc001lcm.2	+	7	673	c.630C>T	c.(628-630)CCC>CCT	p.P210P		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	210					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	GATTGGACCCCAGCGATGCCA	0.483													6	21					0	0	0.001168	0	0
DMBT1	1755	broad.mit.edu	37	10	124377568	124377568	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:124377568G>A	uc001lgk.1	+	38	4646	c.4540G>A	c.(4540-4542)GGA>AGA	p.G1514R	DMBT1_uc001lgl.1_Missense_Mutation_p.G1504R|DMBT1_uc001lgm.1_Missense_Mutation_p.G886R|DMBT1_uc009xzz.1_Missense_Mutation_p.G1514R|DMBT1_uc010qtx.1_Missense_Mutation_p.G365R|DMBT1_uc009yab.1_Missense_Mutation_p.G217R	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1514	SRCR 12.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ACTGGTGAATGGAGGTGACAG	0.547													111	138					0	0	0.003610	0	0
ECHS1	1892	broad.mit.edu	37	10	135182473	135182473	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:135182473C>T	uc001lmu.2	-	4	539	c.468G>A	c.(466-468)GAG>GAA	p.E156E		NM_004092	NP_004083	P30084	ECHM_HUMAN	mitochondrial short-chain enoyl-coenzyme A	156					fatty acid beta-oxidation	mitochondrial matrix	enoyl-CoA hydratase activity|protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;1.62e-06)|OV - Ovarian serous cystadenocarcinoma(35;5.75e-06)|Epithelial(32;7.58e-06)		ACTGGGCCTTCTCACCGGCAT	0.488													26	33					0	0	0.002096	0	0
LOC653544	653544	broad.mit.edu	37	10	135491113	135491113	+	Missense_Mutation	SNP	G	A	A	rs150899513	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:135491113G>A	uc010qvi.1	+	1	835	c.724G>A	c.(724-726)GCC>ACC	p.A242T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	242						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGTCGCCTTCGCCCACACCGG	0.776													4	33					0	0	0.003080	0	0
AP2A2	161	broad.mit.edu	37	11	1006571	1006571	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:1006571C>T	uc001lss.2	+	17	2431	c.2250C>T	c.(2248-2250)TTC>TTT	p.F750F	AP2A2_uc001lst.1_Silent_p.F751F|AP2A2_uc009yco.1_RNA	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	750					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCACGCAGTTCCTAAACTTTA	0.423													27	88					0	0	0.009535	0	0
MUC6	4588	broad.mit.edu	37	11	1016670	1016670	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:1016670C>T	uc001lsw.2	-	31	6182	c.6131G>A	c.(6130-6132)GGC>GAC	p.G2044D		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	2044	Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGGAACGGTGCCTGTTGGCGT	0.572													38	583					0	0	0.005524	0	0
MUC6	4588	broad.mit.edu	37	11	1019291	1019291	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:1019291C>T	uc001lsw.2	-	30	4065	c.4014G>A	c.(4012-4014)GGG>GGA	p.G1338G		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1338	Pro-rich.|Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGGGGCTTGTCCCTGATGTGG	0.617													12	26					0	0	0.001855	0	0
MUC5B	727897	broad.mit.edu	37	11	1271167	1271167	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:1271167C>T	uc009ycr.1	+	51	14602	c.14476C>T	c.(14476-14478)CCC>TCC	p.P4826S	MUC5B_uc001ltb.2_Missense_Mutation_p.P4356S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4353	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CACAATCCACCCCTCCTCCAC	0.647													19	47					0	0	0.008871	0	0
KRTAP5-6	440023	broad.mit.edu	37	11	1718666	1718666	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:1718666G>A	uc001lua.2	+	1	242	c.191G>A	c.(190-192)GGG>GAG	p.G64E		NM_001012416	NP_001012416	Q6L8G9	KRA56_HUMAN	keratin associated protein 5-6	64	6 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGCTCTTGTGGGGGCTCCAAA	0.642													56	105					0	0	0.003610	0	0
TH	7054	broad.mit.edu	37	11	2189797	2189797	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:2189797G>A	uc001lvq.2	-	4	523	c.504C>T	c.(502-504)CGC>CGT	p.R168R	TH_uc001lvp.2_Silent_p.R164R|TH_uc001lvr.2_Silent_p.R137R|TH_uc010qxj.1_Silent_p.R141R|TH_uc001lvs.2_Silent_p.R137R|TH_uc001lvt.2_Silent_p.R141R|TH_uc009ydh.1_5'Flank	NM_199292	NP_954986	P07101	TY3H_HUMAN	tyrosine hydroxylase isoform a	168					dopamine biosynthetic process from tyrosine|embryonic camera-type eye morphogenesis|epinephrine biosynthetic process|eye photoreceptor cell development|heart morphogenesis|hormone biosynthetic process|learning|locomotory behavior|memory|neurotransmitter biosynthetic process|neurotransmitter secretion|norepinephrine biosynthetic process|pigmentation|regulation of heart contraction|response to ethanol|response to hypoxia|synaptic transmission, dopaminergic|visual perception	cytosol|internal side of plasma membrane|melanosome membrane|nucleus|perikaryon|smooth endoplasmic reticulum	protein binding|tyrosine 3-monooxygenase activity				0		all_epithelial(84;1.46e-23)|Lung NSC(207;4.44e-11)|all_lung(207;1.11e-09)|Ovarian(85;1.78e-06)|Breast(177;1.78e-05)|Medulloblastoma(188;0.0208)|all_neural(188;0.0416)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;8.45e-09)|Lung(200;0.000152)|LUSC - Lung squamous cell carcinoma(625;0.00154)	L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Metyrosine(DB00765)|Tetrahydrobiopterin(DB00360)	GGTCCCCTCGGCGCACCTCGA	0.682													8	23					0	0	0.003080	0	0
ART5	116969	broad.mit.edu	37	11	3660014	3660014	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:3660014C>T	uc001lyb.1	-	4	1223	c.830G>A	c.(829-831)GGA>GAA	p.G277E	ART5_uc001lyc.1_Missense_Mutation_p.G277E|ART5_uc001lyd.2_3'UTR|ART5_uc009yea.2_3'UTR	NM_053017	NP_443750	Q96L15	NAR5_HUMAN	ADP-ribosyltransferase 5 precursor	277						extracellular region	NAD(P)+-protein-arginine ADP-ribosyltransferase activity			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0336)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTCACCCGTTCCCAGGGCTCC	0.592													36	57					0	0	0.007835	0	0
OR52B4	143496	broad.mit.edu	37	11	4388826	4388826	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:4388826C>T	uc010qye.1	-	1	700	c.700G>A	c.(700-702)GAT>AAT	p.D234N		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGCAAGCATCTGGAGAAGGC	0.438													21	64					0	0	0.002299	0	0
OR52M1	119772	broad.mit.edu	37	11	4566547	4566547	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:4566547G>C	uc010qyf.1	+	1	127	c.127G>C	c.(127-129)GGG>CGG	p.G43R		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCTGTGGTGGGGAATGTGAC	0.562													21	45					0	0	0.001882	0	0
OR52I1	390037	broad.mit.edu	37	11	4615303	4615303	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:4615303C>T	uc010qyi.1	+	1	35	c.35C>T	c.(34-36)ACC>ATC	p.T12I		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAATGGAAACCCCTGCCTCC	0.473													51	146					0	0	0.003610	0	0
OR51E2	81285	broad.mit.edu	37	11	4703752	4703752	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:4703752T>C	uc001lzk.2	-	2	434	c.190A>G	c.(190-192)ATG>GTG	p.M64V		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		GCTGCAAGCATGCAGAGAAAG	0.502													25	64					0	0	0.004656	0	0
OR51F2	119694	broad.mit.edu	37	11	4843076	4843076	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:4843076G>A	uc010qyn.1	+	1	461	c.461G>A	c.(460-462)CGA>CAA	p.R154Q		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCAATGCCCGAATTGCCAAG	0.463													80	133					0	0	0.003610	0	0
OR51T1	401665	broad.mit.edu	37	11	4903321	4903321	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:4903321C>T	uc010qyp.1	+	1	273	c.273C>T	c.(271-273)TTC>TTT	p.F91F		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGTATTATTTCCTCTCCATGC	0.468													21	64					0	0	0.002780	0	0
OR51A7	119687	broad.mit.edu	37	11	4929383	4929383	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:4929383C>T	uc010qyq.1	+	1	784	c.784C>T	c.(784-786)CAC>TAC	p.H262Y		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCCATGCATCACTTTGCCAA	0.488													63	138					0	0	0.003610	0	0
OR51G2	81282	broad.mit.edu	37	11	4936874	4936874	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:4936874C>T	uc001lzr.1	-	1	20	c.20G>A	c.(19-21)GGA>GAA	p.G7E		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTGCTGTTTCCCAGGGATCC	0.547													21	40					0	0	0.008871	0	0
MMP26	56547	broad.mit.edu	37	11	5013468	5013468	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:5013468C>T	uc001lzv.2	+	6	800	c.782C>T	c.(781-783)CCT>CTT	p.P261L		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	261					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		TCTGACATACCTTAATGTTAG	0.403													5	14					0	0	0.001168	0	0
OR51B4	79339	broad.mit.edu	37	11	5322921	5322921	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:5322921C>T	uc010qza.1	-	1	256	c.256G>A	c.(256-258)GAC>AAC	p.D86N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCCTCTGGTCTAGCAGCAGG	0.512													28	51					0	0	0.006320	0	0
OR51B4	79339	broad.mit.edu	37	11	5322940	5322940	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:5322940G>A	uc010qza.1	-	1	237	c.237C>T	c.(235-237)GTC>GTT	p.V79V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGACACCCAGGACTGTGGGCA	0.507													28	49					0	0	0.006320	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444265	5444265	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:5444265G>A	uc010qzd.1	+	1	835	c.835G>A	c.(835-837)GCC>ACC	p.A279T	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTTATCATGGCCAATATCTA	0.473													29	58					0	0	0.008361	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529451	5529451	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:5529451C>T	uc001may.1	-	2	1424	c.1338G>A	c.(1336-1338)TCG>TCA	p.S446S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	446										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTCCCAGCCCCGAGACAAGAT	0.542													20	49					0	0	0.007413	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529823	5529823	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:5529823C>T	uc001may.1	-	2	1052	c.966G>A	c.(964-966)GGG>GGA	p.G322G	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	322										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATCCTGATCCCCATCCTGCC	0.512													23	38					0	0	0.001882	0	0
OR52N2	390077	broad.mit.edu	37	11	5841606	5841606	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:5841606T>A	uc010qzp.1	+	1	41	c.41T>A	c.(40-42)TTT>TAT	p.F14Y	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCAGGATTCTTTATCTTGAAT	0.512													30	41					0	0	0.002096	0	0
OR56A5	390084	broad.mit.edu	37	11	5989304	5989304	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:5989304C>T	uc010qzu.1	-	1	421	c.421G>A	c.(421-423)GAT>AAT	p.D141N		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	141	Cytoplasmic (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						ACAAATTGATCAGTGATGATG	0.483													5	12					0	0	0.000602	0	0
TRIM3	10612	broad.mit.edu	37	11	6477646	6477646	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:6477646G>A	uc001mdh.2	-	7	1697	c.1310C>T	c.(1309-1311)TCC>TTC	p.S437F	TRIM3_uc001mdi.2_Missense_Mutation_p.S437F|TRIM3_uc010raj.1_Missense_Mutation_p.S318F|TRIM3_uc009yfd.2_Missense_Mutation_p.S437F|TRIM3_uc010rak.1_Missense_Mutation_p.S437F|TRIM3_uc001mdj.2_Missense_Mutation_p.S318F	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	437					nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCGCCAGGGGACTTGACACG	0.667													17	27					0	0	0.004007	0	0
DNHD1	144132	broad.mit.edu	37	11	6589016	6589016	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:6589016C>T	uc001mdw.3	+	36	12841	c.12277C>T	c.(12277-12279)CCA>TCA	p.P4093S	DNHD1_uc001mea.3_Missense_Mutation_p.P362S|DNHD1_uc001meb.2_Missense_Mutation_p.P361S|DNHD1_uc001mec.2_Missense_Mutation_p.P361S|DNHD1_uc010rao.1_Missense_Mutation_p.P351S|DNHD1_uc009yfg.2_5'Flank	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	4093					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GATCTTGTTGCCACCGCCTGG	0.552													16	46					0	0	0.004990	0	0
OR2AG2	338755	broad.mit.edu	37	11	6790090	6790090	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:6790090G>A	uc001meq.1	-	1	99	c.99C>T	c.(97-99)ATC>ATT	p.I33I		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ACATGTATAGGATTGTAAATG	0.537													32	47					0	0	0.009535	0	0
OR10A4	283297	broad.mit.edu	37	11	6898760	6898760	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:6898760G>A	uc010rat.1	+	1	882	c.882G>A	c.(880-882)AGG>AGA	p.R294R		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ACAGCTCAAGGAATAAAGAAG	0.493													32	77					0	0	0.003755	0	0
NLRP14	338323	broad.mit.edu	37	11	7065201	7065201	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:7065201C>T	uc001mfb.1	+	4	2267	c.1944C>T	c.(1942-1944)CTC>CTT	p.L648L		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	648					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AAACAAGCCTCCCAACTAACA	0.473													23	58					0	0	0.003954	0	0
OR10A3	26496	broad.mit.edu	37	11	7960190	7960190	+	Missense_Mutation	SNP	C	T	T	rs146552050		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:7960190C>T	uc010rbi.1	-	1	878	c.878G>A	c.(877-879)CGA>CAA	p.R293Q		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTCACTGTTTCGTAAGCTATA	0.418													14	43					0	0	0.002450	0	0
RIC3	79608	broad.mit.edu	37	11	8132361	8132361	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:8132361C>T	uc001mgd.2	-	6	1048	c.994G>A	c.(994-996)GAA>AAA	p.E332K	RIC3_uc001mgb.2_Missense_Mutation_p.E170K|RIC3_uc001mgc.2_Missense_Mutation_p.E331K|RIC3_uc001mge.2_Missense_Mutation_p.E150K|RIC3_uc010rbl.1_Missense_Mutation_p.E282K|RIC3_uc010rbm.1_Missense_Mutation_p.E360K|RIC3_uc009yfm.2_Missense_Mutation_p.E251K|RIC3_uc009yfn.2_Missense_Mutation_p.E135K	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	332	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		TTGGTGGTTTCCTCTTGCTCA	0.483													39	80					0	0	0.006230	0	0
STK33	65975	broad.mit.edu	37	11	8496233	8496233	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:8496233C>T	uc001mgi.1	-	1	1139	c.220G>A	c.(220-222)GAT>AAT	p.D74N	STK33_uc001mgj.1_Missense_Mutation_p.D74N|STK33_uc001mgk.1_Missense_Mutation_p.D74N|STK33_uc010rbn.1_Missense_Mutation_p.D33N|STK33_uc001mgl.3_Intron|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	74						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		TTTACCAAATCTTTCCTGGAG	0.373													3	16					0	0	0.004672	0	0
AMPD3	272	broad.mit.edu	37	11	10506366	10506366	+	Splice_Site	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:10506366G>A	uc001mio.1	+	5	925	c.590_splice	c.e5-1	p.D197_splice	AMPD3_uc010rbz.1_Splice_Site_p.D38_splice|AMPD3_uc001min.1_Splice_Site_p.D206_splice|AMPD3_uc009yfw.1_Intron|AMPD3_uc009yfx.1_Splice_Site_p.D197_splice|AMPD3_uc009yfz.2_Splice_Site|AMPD3_uc001mip.1_Splice_Site_p.D204_splice|AMPD3_uc009yfy.2_Splice_Site_p.D197_splice	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B						AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		CTGTTTTGCAGACTTCCACCC	0.483													30	78					0	0	0.009535	0	0
CSNK2A1P	283106	broad.mit.edu	37	11	11374277	11374277	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:11374277G>C	uc001mjp.2	-	1	628	c.390C>G	c.(388-390)GAC>GAG	p.D130E	GALNTL4_uc001mjo.2_Intron	NM_177559	NP_808227			casein kinase II alpha 1 subunit isoform a												0						GAATATCATAGTCTGTTAACG	0.423													38	69					0	0	0.004878	0	0
CSNK2A1P	283106	broad.mit.edu	37	11	11374442	11374442	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:11374442C>T	uc001mjp.2	-	1	463	c.225G>A	c.(223-225)AAG>AAA	p.K75K	GALNTL4_uc001mjo.2_Intron	NM_177559	NP_808227			casein kinase II alpha 1 subunit isoform a												0						TAATTTTCTTCTTTTTTACTG	0.363													46	54					0	0	0.003610	0	0
SPON1	10418	broad.mit.edu	37	11	14157038	14157038	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:14157038G>A	uc001mle.2	+	7	1287	c.749G>A	c.(748-750)GGA>GAA	p.G250E		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	250	Spondin.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		GAATATGGAGGATATGCCAGC	0.478													41	73					0	0	0.007835	0	0
USH1C	10083	broad.mit.edu	37	11	17547960	17547960	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:17547960C>T	uc001mnf.2	-	8	717	c.608G>A	c.(607-609)GGA>GAA	p.G203E	USH1C_uc001mne.2_Missense_Mutation_p.G203E|USH1C_uc009yhb.2_Missense_Mutation_p.G203E|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.G167E	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	203					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						TTCCCGATTTCCAGGGGAGCC	0.597													15	21					0	0	0.006122	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159064	18159064	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:18159064C>T	uc001mnu.2	+	3	676	c.315C>T	c.(313-315)CCC>CCT	p.P105P		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	105	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TGACCTTTCCCTACTTTATAG	0.547													29	88					0	0	0.007291	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18194934	18194934	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:18194934G>A	uc001mnv.1	+	1	551	c.131G>A	c.(130-132)GGA>GAA	p.G44E		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	44	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GGACTGACAGGAAACGCGGTT	0.562													30	58					0	0	0.002836	0	0
LDHA	3939	broad.mit.edu	37	11	18424479	18424479	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:18424479C>T	uc001mok.3	+	5	783	c.511C>T	c.(511-513)CGT>TGT	p.R171C	LDHA_uc010rdc.1_Missense_Mutation_p.R113C|LDHA_uc009yhn.2_Missense_Mutation_p.R171C|LDHA_uc009yho.2_5'UTR|LDHA_uc001mol.3_Missense_Mutation_p.R171C|LDHA_uc010rdd.1_Missense_Mutation_p.R200C	NM_005566	NP_005557	P00338	LDHA_HUMAN	lactate dehydrogenase A isoform 1	171					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity|protein binding			central_nervous_system(3)	3					NADH(DB00157)	AGCCCGATTCCGTTACCTAAT	0.463													19	50					0	0	0.001882	0	0
SPTY2D1	144108	broad.mit.edu	37	11	18636920	18636920	+	Missense_Mutation	SNP	G	A	A	rs138155181	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:18636920G>A	uc001moy.2	-	3	1117	c.901C>T	c.(901-903)CGT>TGT	p.R301C	SPTY2D1_uc010rdi.1_Missense_Mutation_p.R301C	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	301	Ser-rich.									breast(1)	1						TGGCCCTCACGAAGTGAGGGT	0.507													31	97					0	0	0.009535	0	0
PTPN5	84867	broad.mit.edu	37	11	18751000	18751000	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:18751000C>T	uc001mpd.2	-	14	2035	c.1604G>A	c.(1603-1605)AGG>AAG	p.R535K	PTPN5_uc001mpb.2_Missense_Mutation_p.R503K|PTPN5_uc001mpc.2_Missense_Mutation_p.R535K|PTPN5_uc001mpe.2_Missense_Mutation_p.R503K|PTPN5_uc010rdj.1_Missense_Mutation_p.R479K|PTPN5_uc001mpf.2_Missense_Mutation_p.R511K|PTPN5_uc010rdk.1_Missense_Mutation_p.R480K	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	535	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						GTGGGCTGACCTGTCCTGACG	0.662													10	16					0	0	0.000978	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955550	18955550	+	Missense_Mutation	SNP	G	A	A	rs150108666		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:18955550G>A	uc001mpg.2	-	1	1000	c.782C>T	c.(781-783)TCC>TTC	p.S261F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	261	Helical; Name=7; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GTTAAGAGCGGACAGGAAAAT	0.463													14	43					0	0	0.004007	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955718	18955718	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:18955718C>T	uc001mpg.2	-	1	832	c.614G>A	c.(613-615)GGA>GAA	p.G205E		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	205	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CTTCCGGGATCCACAGAGAAT	0.512													11	37					0	0	0.001368	0	0
SLC6A5	9152	broad.mit.edu	37	11	20623094	20623094	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:20623094G>A	uc001mqd.2	+	2	696	c.423G>A	c.(421-423)CTG>CTA	p.L141L	SLC6A5_uc009yic.2_5'UTR	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	141	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AGGGCACCCTGGAGCGGAACA	0.662													15	28					0	0	0.004007	0	0
SLC6A5	9152	broad.mit.edu	37	11	20676294	20676294	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:20676294G>A	uc001mqd.2	+	16	2547	c.2274G>A	c.(2272-2274)TGG>TGA	p.W758*	SLC6A5_uc009yic.2_Nonsense_Mutation_p.W523*	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	758	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AGCCGGACTGGGGCCCATTCT	0.557													41	78					0	0	0.002522	0	0
NELL1	4745	broad.mit.edu	37	11	20939733	20939733	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:20939733C>T	uc001mqe.2	+	6	762	c.609C>T	c.(607-609)ATC>ATT	p.I203I	NELL1_uc001mqf.2_Silent_p.I203I|NELL1_uc009yid.2_Silent_p.I231I|NELL1_uc010rdo.1_Silent_p.I146I|NELL1_uc010rdp.1_Intron	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	203	TSP N-terminal.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						TCAAGGGGATCATCCAAGATG	0.378													38	86					0	0	0.008740	0	0
SLC17A6	57084	broad.mit.edu	37	11	22399051	22399051	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:22399051G>A	uc001mqk.2	+	12	1927	c.1514G>A	c.(1513-1515)TGG>TAG	p.W505*		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	505	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						AAACAACCCTGGGCAGACCCG	0.403													19	31					0	0	0.006122	0	0
LUZP2	338645	broad.mit.edu	37	11	24750779	24750779	+	Missense_Mutation	SNP	C	T	T	rs150458536		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:24750779C>T	uc001mqs.2	+	2	361	c.127C>T	c.(127-129)CGT>TGT	p.R43C	LUZP2_uc009yif.2_5'UTR|LUZP2_uc009yig.2_Missense_Mutation_p.R43C	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	43	Potential.					extracellular region		p.R43C(1)		ovary(1)|skin(1)	2						CACCATTCTTCGTCAGCTGAC	0.433													30	48					0	0	0.008361	0	0
ANO3	63982	broad.mit.edu	37	11	26655777	26655777	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:26655777G>A	uc001mqt.3	+	19	2045	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	ANO3_uc010rdr.1_Missense_Mutation_p.E618K|ANO3_uc010rds.1_Missense_Mutation_p.E473K|ANO3_uc010rdt.1_Missense_Mutation_p.E488K	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	634	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ATCAGAGTGGGAAAACAGCTT	0.308													6	33					0	0	0.003080	0	0
CCDC73	493860	broad.mit.edu	37	11	32636355	32636355	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:32636355C>T	uc001mtv.2	-	16	1553	c.1509G>A	c.(1507-1509)TCG>TCA	p.S503S		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	503										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					CCGTAACATTCGAGGTTTGTC	0.323													22	60					0	0	0.001882	0	0
C11orf41	25758	broad.mit.edu	37	11	33628245	33628245	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:33628245C>T	uc001mup.3	+	13	4189	c.4065C>T	c.(4063-4065)GCC>GCT	p.A1355A		NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	1349						integral to membrane				ovary(2)	2						GCAAGGTGGCCGCTGAACCCT	0.542													13	32					0	0	0.003163	0	0
C11orf41	25758	broad.mit.edu	37	11	33631448	33631448	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:33631448G>A	uc001mup.3	+	14	4466	c.4342G>A	c.(4342-4344)GAA>AAA	p.E1448K		NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	1442						integral to membrane				ovary(2)	2						AGCCCCGAAGGAAATGGAGCA	0.478													19	50					0	0	0.010504	0	0
NAT10	55226	broad.mit.edu	37	11	34158550	34158550	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:34158550C>T	uc001mvk.2	+	21	2432	c.2188C>T	c.(2188-2190)CCT>TCT	p.P730S	NAT10_uc010ren.1_Missense_Mutation_p.P658S	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	730	N-acetyltransferase.|Required for localization to the nucleolus and midbody.					nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				TGGATTTGTTCCTGTTTATCT	0.512													12	37					0	0	0.002450	0	0
ELF5	2001	broad.mit.edu	37	11	34502374	34502374	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:34502374C>T	uc001mvo.1	-	6	876	c.646G>A	c.(646-648)GGA>AGA	p.G216R	ELF5_uc001mvp.1_Missense_Mutation_p.G206R|ELF5_uc009ykd.1_Missense_Mutation_p.G111R	NM_198381	NP_938195	Q9UKW6	ELF5_HUMAN	E74-like factor 5 ESE-2a	216	ETS.				cell proliferation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.0087)|all_hematologic(20;0.0384)				TTCCTTTGTCCCCACATCTTT	0.408													14	51					0	0	0.004007	0	0
RAG1	5896	broad.mit.edu	37	11	36595229	36595229	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:36595229G>A	uc001mwu.3	+	2	499	c.375G>A	c.(373-375)AGG>AGA	p.R125R	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	125	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				AGCACAACAGGAGATATCCAG	0.488									Familial_Hemophagocytic_Lymphohistiocytosis				49	86					0	0	0.003610	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136827	40136827	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:40136827C>T	uc001mxa.1	-	2	2980	c.1016G>A	c.(1015-1017)AGG>AAG	p.R339K	LRRC4C_uc001mxc.1_Missense_Mutation_p.R335K|LRRC4C_uc001mxd.1_Missense_Mutation_p.R335K|LRRC4C_uc001mxb.1_Missense_Mutation_p.R335K	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	339	LRRCT.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TCCAATGTACCTCCCCTTTAG	0.527													16	37					0	0	0.003163	0	0
AMBRA1	55626	broad.mit.edu	37	11	46567280	46567280	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:46567280G>A	uc010rgu.1	-	5	785	c.425C>T	c.(424-426)TCC>TTC	p.S142F	AMBRA1_uc010rgt.1_5'Flank|AMBRA1_uc009ylc.1_Missense_Mutation_p.S142F|AMBRA1_uc001ncu.1_Missense_Mutation_p.S142F|AMBRA1_uc001ncv.2_Missense_Mutation_p.S142F|AMBRA1_uc001ncw.2_Missense_Mutation_p.S142F|AMBRA1_uc001ncx.2_Missense_Mutation_p.S142F	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	142	WD 3.				autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		GAAAGCCAGGGAGGCAATGGC	0.527													23	44					0	0	0.002780	0	0
LRP4	4038	broad.mit.edu	37	11	46918471	46918471	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:46918471C>T	uc001ndn.3	-	8	1017	c.871G>A	c.(871-873)GGG>AGG	p.G291R		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	291	Extracellular (Potential).|LDL-receptor class A 7.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		TCGTCCTCCCCATCACAGCGC	0.572													27	76					0	0	0.006320	0	0
ARFGAP2	84364	broad.mit.edu	37	11	47189487	47189487	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:47189487A>T	uc001ndt.2	-	12	1193	c.1178T>A	c.(1177-1179)ATC>AAC	p.I393N	ARFGAP2_uc010rha.1_Missense_Mutation_p.I124N|ARFGAP2_uc010rhb.1_Missense_Mutation_p.I365N|ARFGAP2_uc001ndu.2_Missense_Mutation_p.I257N|ARFGAP2_uc010rhc.1_Missense_Mutation_p.I124N	NM_032389	NP_115765	Q8N6H7	ARFG2_HUMAN	ADP-ribosylation factor GTPase activating	393	Required for interaction with coatomer.				protein transport|regulation of ARF GTPase activity|vesicle-mediated transport	Golgi membrane|nucleolus|plasma membrane	ARF GTPase activator activity|zinc ion binding			ovary(1)	1						GATGCTTGAGATGGTCACTTC	0.433													7	9					0	0	0.001984	0	0
MADD	8567	broad.mit.edu	37	11	47306552	47306552	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:47306552C>T	uc001ner.1	+	13	2409	c.2218C>T	c.(2218-2220)CCT>TCT	p.P740S	MADD_uc001neq.2_Missense_Mutation_p.P740S|MADD_uc001nev.1_Missense_Mutation_p.P740S|MADD_uc001nes.1_Missense_Mutation_p.P740S|MADD_uc001net.1_Missense_Mutation_p.P740S|MADD_uc009yln.1_Missense_Mutation_p.P740S|MADD_uc001neu.1_Missense_Mutation_p.P740S|MADD_uc001nex.2_Missense_Mutation_p.P740S|MADD_uc001nez.2_Missense_Mutation_p.P740S|MADD_uc001new.2_Missense_Mutation_p.P740S	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	740					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CAAGCCCCTCCCTTCCGTGCC	0.537													33	65					0	0	0.002096	0	0
MYBPC3	4607	broad.mit.edu	37	11	47364271	47364271	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:47364271G>A	uc001nfa.3	-	16	1537	c.1482C>T	c.(1480-1482)ACC>ACT	p.T494T	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	493	Ig-like C2-type 3.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		TCTCCTCCCGGGTCAGCTCCA	0.622													44	73					0	0	0.003610	0	0
MTCH2	23788	broad.mit.edu	37	11	47653242	47653242	+	Missense_Mutation	SNP	G	A	A	rs146228351	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:47653242G>A	uc010rho.1	-	6	580	c.391C>T	c.(391-393)CGT>TGT	p.R131C	MTCH2_uc001nge.2_Missense_Mutation_p.R4C|MTCH2_uc010rhp.1_Intron	NM_014342	NP_055157	Q9Y6C9	MTCH2_HUMAN	mitochondrial carrier 2	131	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0						GCAGCAGAACGAGCGATCATC	0.423													30	82					0	0	0.002836	0	0
OR4A47	403253	broad.mit.edu	37	11	48510356	48510356	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:48510356G>A	uc010rhx.1	+	1	12	c.12G>A	c.(10-12)AGG>AGA	p.R4R		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGAGCCAAGGAAAAATGTGA	0.363													7	11					0	0	0.004482	0	0
FOLH1	2346	broad.mit.edu	37	11	49179553	49179553	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:49179553C>T	uc001ngy.2	-	14	1744	c.1483G>A	c.(1483-1485)GAA>AAA	p.E495K	FOLH1_uc001ngz.2_Missense_Mutation_p.E495K|FOLH1_uc009yly.2_Missense_Mutation_p.E480K|FOLH1_uc009ylz.2_Missense_Mutation_p.E480K|FOLH1_uc009yma.2_Missense_Mutation_p.E187K	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	495	NAALADase.|Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	GTCCAACTTTCATAAAGAGAT	0.348													13	31					0	0	0.010504	0	0
OR4A5	81318	broad.mit.edu	37	11	51411590	51411590	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:51411590G>A	uc001nhi.1	-	1	806	c.806C>T	c.(805-807)ACT>ATT	p.T269I		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	269	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ATAAAACACAGTCATGAACTT	0.363													9	23					0	0	0.008291	0	0
OR4A16	81327	broad.mit.edu	37	11	55110964	55110964	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:55110964G>A	uc010rie.1	+	1	288	c.288G>A	c.(286-288)ATG>ATA	p.M96I		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						CAGCTTGCATGGGTCAGCTCT	0.448													40	134					0	0	0.008740	0	0
OR4C16	219428	broad.mit.edu	37	11	55339824	55339824	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:55339824C>T	uc010rih.1	+	1	221	c.221C>T	c.(220-222)TCC>TTC	p.S74F		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				CTCTCTACTTCCATAACCCCT	0.418													68	125					0	0	0.003610	0	0
OR5D16	390144	broad.mit.edu	37	11	55606440	55606440	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:55606440G>A	uc010rio.1	+	1	213	c.213G>A	c.(211-213)GTG>GTA	p.V71V		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TCTCCTTTGTGGATTTCTGCT	0.413													48	93					0	0	0.003610	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735856	55735856	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:55735856C>T	uc010rit.1	-	1	84	c.84G>A	c.(82-84)ATG>ATA	p.M28I		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					ACATCAGGATCATCAAATACA	0.333													27	40					0	0	0.004656	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409001	56409001	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:56409001C>T	uc001njb.1	-	1	915	c.915G>A	c.(913-915)AAG>AAA	p.K305K		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TCTTTAGGGCCTTTTTTACAT	0.343													6	31					0	0	0.001984	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409093	56409093	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:56409093C>T	uc001njb.1	-	1	823	c.823G>A	c.(823-825)GAG>AAG	p.E275K		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	275	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TTGTCTTGCTCCATTGAGTAG	0.408													23	48					0	0	0.002780	0	0
OR9G4	283189	broad.mit.edu	37	11	56510580	56510580	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:56510580G>A	uc010rjo.1	-	1	708	c.708C>T	c.(706-708)ATC>ATT	p.I236I		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	236	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TAGCCAGGAGGATGTTGACAT	0.488													33	61					0	0	0.003755	0	0
OR9G4	283189	broad.mit.edu	37	11	56510823	56510823	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:56510823G>A	uc010rjo.1	-	1	465	c.465C>T	c.(463-465)CTC>CTT	p.L155L		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GCCCAGTACAGAGGGCGGTGG	0.468													30	84					0	0	0.002096	0	0
SSRP1	6749	broad.mit.edu	37	11	57099700	57099701	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:57099700_57099701GG>AA	uc001njt.2	-	8	1193_1194	c.926_927CC>TT	c.(925-927)TCC>TTT	p.S309F		NM_003146	NP_003137	Q08945	SSRP1_HUMAN	structure specific recognition protein 1	309					DNA repair|DNA replication|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|cytoplasm|nucleoplasm	DNA binding|protein binding			ovary(2)	2						TCTCATAGAGGGATCCTGACAT	0.53													13	59					0	0	0.004672	0	0
OR5B17	219965	broad.mit.edu	37	11	58126225	58126225	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:58126225G>A	uc010rke.1	-	1	318	c.318C>T	c.(316-318)GCC>GCT	p.A106A		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TTTCCACAGTGGCAAAGACTG	0.478													15	23					0	0	0.002450	0	0
OR5B3	441608	broad.mit.edu	37	11	58170239	58170239	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:58170239G>A	uc010rkf.1	-	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GAATGTGTAGGATATCAAGAT	0.403													12	30					0	0	0.001368	0	0
OR5B3	441608	broad.mit.edu	37	11	58170535	58170535	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:58170535C>T	uc010rkf.1	-	1	348	c.348G>A	c.(346-348)ATG>ATA	p.M116I		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GGTCATAGGCCATTGAGGCCA	0.463													33	68					0	0	0.002836	0	0
GLYATL2	219970	broad.mit.edu	37	11	58601949	58601949	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:58601949G>A	uc001nnd.3	-	6	969	c.838C>T	c.(838-840)CCT>TCT	p.P280S	GLYATL2_uc009ymq.2_Missense_Mutation_p.P280S	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	280						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	CAGCCACAAGGACAAATCTTA	0.353													16	36					0	0	0.004007	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722282	58722282	+	Missense_Mutation	SNP	C	T	T	rs151204927		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:58722282C>T	uc001nnf.2	+	6	602	c.226C>T	c.(226-228)CGT>TGT	p.R76C	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.R107C|GLYATL1_uc001nni.1_Missense_Mutation_p.R76C|GLYATL1_uc001nnj.1_Missense_Mutation_p.R76C			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	76						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	AAACGTATATCGTATGTTCTC	0.383													7	32					0	0	0.003080	0	0
GLYATL1	92292	broad.mit.edu	37	11	58723340	58723340	+	Missense_Mutation	SNP	G	A	A	rs145479301	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:58723340G>A	uc001nnf.2	+	8	1125	c.749G>A	c.(748-750)CGA>CAA	p.R250Q	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.R281Q|GLYATL1_uc001nni.1_Missense_Mutation_p.R250Q|GLYATL1_uc001nnj.1_Missense_Mutation_p.R250Q			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	250						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	GTGATGGTGCGATACATGAAA	0.453													15	31					0	0	0.004007	0	0
OR4D9	390199	broad.mit.edu	37	11	59282987	59282987	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:59282987C>T	uc010rkv.1	+	1	602	c.602C>T	c.(601-603)TCA>TTA	p.S201L		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGATGATTTCAAATAATGGG	0.473													18	83					0	0	0.004990	0	0
OR4D9	390199	broad.mit.edu	37	11	59283128	59283128	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:59283128C>T	uc010rkv.1	+	1	743	c.743C>T	c.(742-744)ACC>ATC	p.T248I		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCGTGGTGACCCTGCATTTC	0.557													38	132					0	0	0.006999	0	0
Unknown	0	broad.mit.edu	37	11	59997402	59997402	+	RNA	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:59997402T>C	uc001nov.2	-	1		c.143A>G			uc001now.2_RNA|uc001nox.2_Missense_Mutation_p.K43E|uc001noy.2_Missense_Mutation_p.K43E|uc009ymw.2_Missense_Mutation_p.K43E					Homo sapiens mRNA for hypothetical protein, partial cds, clone:Hsa11-digit17-05-01-R.																		ACTTTGGGTTTCCTCTTGAAG	0.458													7	13					0	0	0.001984	0	0
MS4A8B	83661	broad.mit.edu	37	11	60468529	60468530	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:60468529_60468530CT>TC	uc001npv.2	+	2	399_400	c.196_197CT>TC	c.(196-198)CTG>TCG	p.L66S	MS4A8B_uc009yne.1_Missense_Mutation_p.L66S	NM_031457	NP_113645	Q9BY19	M4A8B_HUMAN	membrane-spanning 4-domains, subfamily A, member	66	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						GCAGAAAGCTCTGAAAGAAGGC	0.55													15	26					0	0	0.004672	0	0
TMEM132A	54972	broad.mit.edu	37	11	60696268	60696268	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:60696268G>A	uc001nqj.2	+	4	895	c.702G>A	c.(700-702)GTG>GTA	p.V234V	TMEM132A_uc001nqi.2_Silent_p.V234V|TMEM132A_uc001nqk.2_Silent_p.V247V|TMEM132A_uc001nql.1_Silent_p.V247V	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	234	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CCCTCCCAGTGGGGGGTGTGG	0.711													5	14					0	0	0.000602	0	0
C11orf66	220004	broad.mit.edu	37	11	61254688	61254688	+	Missense_Mutation	SNP	G	A	A	rs146588175		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:61254688G>A	uc001nru.1	+	11	1144	c.1019G>A	c.(1018-1020)CGA>CAA	p.R340Q	C11orf66_uc009ynq.1_Missense_Mutation_p.R320Q	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	340										ovary(1)	1						AGGGATCAGCGATACCTGACC	0.532													31	103					0	0	0.009535	0	0
TAF6L	10629	broad.mit.edu	37	11	62554665	62554665	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:62554665G>A	uc001nvc.2	+	11	1867	c.1766G>A	c.(1765-1767)AGC>AAC	p.S589N	TMEM179B_uc001nvd.3_5'Flank	NM_006473	NP_006464	Q9Y6J9	TAF6L_HUMAN	TAF6-like RNA polymerase II	589					chromatin remodeling|histone H3 acetylation|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	histone deacetylase complex|STAGA complex	DNA binding|protein binding|transcription coactivator activity			ovary(3)	3						TACGGGCCTAGCCCGGCCTCG	0.711											OREG0021030	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	8					0	0	0.004672	0	0
LGALS12	85329	broad.mit.edu	37	11	63283073	63283073	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:63283073C>T	uc001nxa.2	+	8	1093	c.752C>T	c.(751-753)CCT>CTT	p.P251L	LGALS12_uc001nxb.2_Missense_Mutation_p.P242L|LGALS12_uc001nxc.2_Missense_Mutation_p.P252L|LGALS12_uc001nxd.2_Missense_Mutation_p.P190L|LGALS12_uc001nxe.2_Missense_Mutation_p.P181L|LGALS12_uc009yot.2_Missense_Mutation_p.P211L	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	251	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						GCCCATGCTCCTGTGACACTC	0.597													12	45					0	0	0.001368	0	0
RARRES3	5920	broad.mit.edu	37	11	63313695	63313695	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:63313695G>A	uc001nxf.3	+	4	530	c.462G>A	c.(460-462)GCG>GCA	p.A154A		NM_004585	NP_004576	Q9UL19	TIG3_HUMAN	retinoic acid receptor responder (tazarotene	154					lipid catabolic process|negative regulation of cell proliferation		hydrolase activity			ovary(1)	1						GCTCTTTTGCGATTAGGAGAT	0.522													45	145					0	0	0.003610	0	0
ATL3	25923	broad.mit.edu	37	11	63398562	63398562	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:63398562G>A	uc001nxk.1	-	12	1765	c.1489C>T	c.(1489-1491)CGT>TGT	p.R497C	ATL3_uc010rms.1_Missense_Mutation_p.R479C|ATL3_uc010rmr.1_Missense_Mutation_p.R155C	NM_015459	NP_056274	Q6DD88	ATLA3_HUMAN	atlastin 3	497	Cytoplasmic.				endoplasmic reticulum organization|Golgi organization|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	GTP binding|GTPase activity|identical protein binding			pancreas(1)	1						CCCAGCTCACGATATTGACCA	0.483													19	37					0	0	0.010504	0	0
FLRT1	23769	broad.mit.edu	37	11	63884171	63884171	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:63884171G>A	uc001nyi.1	+	2	773	c.432G>A	c.(430-432)AGG>AGA	p.R144R	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	116	LRR 3.|Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						CCATTGCCAGGGACTCGCTGG	0.607													7	47					0	0	0.001984	0	0
CCDC88B	283234	broad.mit.edu	37	11	64112150	64112150	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:64112150G>A	uc001nzy.2	+	14	2181	c.2137G>A	c.(2137-2139)GGC>AGC	p.G713S	CCDC88B_uc009ypo.1_Missense_Mutation_p.G710S|CCDC88B_uc001nzz.1_Missense_Mutation_p.G362S	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	713					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GGTCTGGGAAGGCCCAATCCC	0.622													12	29					0	0	0.001368	0	0
NRXN2	9379	broad.mit.edu	37	11	64421181	64421181	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:64421181G>A	uc001oar.2	-	13	2842	c.2403C>T	c.(2401-2403)GTC>GTT	p.V801V	NRXN2_uc001oas.2_Intron|NRXN2_uc001oaq.2_Silent_p.V468V	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GTGCGCAGCCGACGCGCAGGC	0.572													4	16					0	0	0.001984	0	0
RASGRP2	10235	broad.mit.edu	37	11	64496379	64496379	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:64496379C>T	uc009ypu.2	-	15	1954	c.1727G>A	c.(1726-1728)AGC>AAC	p.S576N	RASGRP2_uc001oat.2_Missense_Mutation_p.S478N|RASGRP2_uc001oau.2_Missense_Mutation_p.S431N|RASGRP2_uc009ypv.2_Missense_Mutation_p.S576N|RASGRP2_uc009ypw.2_Missense_Mutation_p.S576N	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	576					platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						CAGAGAGAAGCTGAAGGCGCG	0.652													4	29					0	0	0.009096	0	0
ATG2A	23130	broad.mit.edu	37	11	64677192	64677192	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:64677192C>A	uc001obx.2	-	14	2183	c.2068G>T	c.(2068-2070)GTC>TTC	p.V690F		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	690							protein binding			ovary(1)|central_nervous_system(1)	2						TGGGTGGGGACTGGGGGACCA	0.667													20	39					1.37522e-17	1.53723e-17	0.007413	1	0
CDCA5	113130	broad.mit.edu	37	11	64846868	64846868	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:64846868G>A	uc001ocp.2	-	5	800	c.635C>T	c.(634-636)CCC>CTC	p.P212L		NM_080668	NP_542399	Q96FF9	CDCA5_HUMAN	cell division cycle associated 5	212					cell division|double-strand break repair|G1/S transition of mitotic cell cycle|mitotic chromosome condensation|mitotic metaphase plate congression|mitotic sister chromatid cohesion|regulation of cohesin localization to chromatin	cytoplasm|nuclear chromatin|plasma membrane	chromatin binding|identical protein binding				0						CTGTTTCTCGGGTGGTGGGGA	0.572													14	50					0	0	0.004007	0	0
CDCA5	113130	broad.mit.edu	37	11	64846871	64846871	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:64846871G>A	uc001ocp.2	-	5	797	c.632C>T	c.(631-633)CCA>CTA	p.P211L		NM_080668	NP_542399	Q96FF9	CDCA5_HUMAN	cell division cycle associated 5	211					cell division|double-strand break repair|G1/S transition of mitotic cell cycle|mitotic chromosome condensation|mitotic metaphase plate congression|mitotic sister chromatid cohesion|regulation of cohesin localization to chromatin	cytoplasm|nuclear chromatin|plasma membrane	chromatin binding|identical protein binding				0						TTTCTCGGGTGGTGGGGAGAT	0.572													15	49					0	0	0.004990	0	0
CAPN1	823	broad.mit.edu	37	11	64972273	64972273	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:64972273C>T	uc009yqd.1	+	11	1396	c.1285C>T	c.(1285-1287)CGC>TGC	p.R429C	CAPN1_uc001odf.1_Missense_Mutation_p.R429C|CAPN1_uc001odg.1_Missense_Mutation_p.R429C|CAPN1_uc010roa.1_Missense_Mutation_p.R170C	NM_005186	NP_005177	P07384	CAN1_HUMAN	calpain 1, large subunit	429	Domain III.				positive regulation of cell proliferation|proteolysis	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Lung NSC(402;0.094)|Melanoma(852;0.16)		Lung(977;0.00168)|LUSC - Lung squamous cell carcinoma(976;0.00813)		GAAGCACCGTCGCCGCGAGCG	0.632											OREG0021073	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	44					0	0	0.003080	0	0
TIGD3	220359	broad.mit.edu	37	11	65123717	65123718	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:65123717_65123718CC>TT	uc001odo.3	+	2	601_602	c.438_439CC>TT	c.(436-441)CCCCCT>CCTTCT	p.P147S		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	147					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						CTTCATTCCCCCCTGAGCCACC	0.614													35	78					0	0	0.004672	0	0
MALAT1	378938	broad.mit.edu	37	11	65273374	65273374	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:65273374G>A	uc010roh.1	+	1		c.8142G>A			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GAGTGGCTGAGAGGGCTTTTG	0.433													23	61					0	0	0.002299	0	0
CCDC87	55231	broad.mit.edu	37	11	66359372	66359372	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:66359372G>A	uc001oiq.3	-	1	1183	c.1115C>T	c.(1114-1116)CCA>CTA	p.P372L	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	372										ovary(1)|skin(1)	2						GTCCAGTGGTGGGTAGCGAGT	0.577													13	59					0	0	0.004007	0	0
CPT1A	1374	broad.mit.edu	37	11	68548126	68548126	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:68548126G>A	uc001oog.3	-	12	1610	c.1440C>T	c.(1438-1440)ATC>ATT	p.I480I	CPT1A_uc001oof.3_Silent_p.I480I|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	480	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GGTGGGCCACGATCGGCGCAT	0.418													18	36					0	0	0.008871	0	0
SHANK2	22941	broad.mit.edu	37	11	70336483	70336483	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:70336483C>T	uc001oqc.2	-	19	2527	c.2449G>A	c.(2449-2451)GAA>AAA	p.E817K	SHANK2_uc010rqn.1_Missense_Mutation_p.E229K|SHANK2_uc001opz.2_Missense_Mutation_p.E222K|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Missense_Mutation_p.E219K|SHANK2_uc001opy.2_5'UTR|SHANK2_uc010rqo.1_Missense_Mutation_p.E30K	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	438					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CCTTGGCGTTCGTACACAGAC	0.602													25	43					0	0	0.007291	0	0
LRTOMT	220074	broad.mit.edu	37	11	71804553	71804553	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:71804553G>A	uc001orr.2	+	4	472	c.94G>A	c.(94-96)GAG>AAG	p.E32K	LRTOMT_uc009ysz.2_RNA|LRTOMT_uc010rqt.1_Missense_Mutation_p.E32K|LRTOMT_uc010rqu.1_Missense_Mutation_p.E14K|LRTOMT_uc009yta.2_Intron|LRTOMT_uc010rqv.1_5'UTR|LRTOMT_uc010rqw.1_5'UTR|LRTOMT_uc001ors.3_5'UTR|LRTOMT_uc010rqs.1_Missense_Mutation_p.E32K	NM_145309	NP_660352	Q96E66	LRC51_HUMAN	leucine rich transmembrane and	32						cytoplasm					0						TCTGGTAAATGAGGAGCCAAG	0.488													6	11					0	0	0.001168	0	0
INPPL1	3636	broad.mit.edu	37	11	71945395	71945395	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:71945395C>T	uc001osf.2	+	20	2430	c.2283C>T	c.(2281-2283)AGC>AGT	p.S761S	INPPL1_uc001osg.2_Silent_p.S519S	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	761					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						AGACAGCCAGCCGCACCAAGT	0.567													11	46					0	0	0.001368	0	0
INPPL1	3636	broad.mit.edu	37	11	71946225	71946225	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:71946225C>T	uc001osf.2	+	22	2628	c.2481C>T	c.(2479-2481)TCC>TCT	p.S827S	INPPL1_uc001osg.2_Silent_p.S585S	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	827					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CAGTCAAGTCCATGGATGGCT	0.547													15	51					0	0	0.003163	0	0
ARAP1	116985	broad.mit.edu	37	11	72407631	72407631	+	Missense_Mutation	SNP	G	A	A	rs146883151		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:72407631G>A	uc001osu.2	-	23	3424	c.3235C>T	c.(3235-3237)CGG>TGG	p.R1079W	ARAP1_uc001osv.2_Missense_Mutation_p.R1079W|ARAP1_uc001osr.2_Missense_Mutation_p.R839W|ARAP1_uc001oss.2_Missense_Mutation_p.R834W|ARAP1_uc009yth.2_Missense_Mutation_p.R773W|ARAP1_uc010rre.1_Missense_Mutation_p.R834W	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1079	Rho-GAP.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						ACTGTGGCCCGGTTGACAGGG	0.567													144	225					0	0	0.003610	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73064048	73064048	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:73064048C>T	uc001otu.2	+	3	3465	c.3444C>T	c.(3442-3444)CTC>CTT	p.L1148L		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1148	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						GAGCCCTGCTCGTCCAGTCGG	0.657													23	28					0	0	0.002780	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73078666	73078666	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:73078666C>T	uc001otu.2	+	21	6054	c.6033C>T	c.(6031-6033)TCC>TCT	p.S2011S		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	2011					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						ACCGGGACTCCCCTTGGCACC	0.647													22	38					0	0	0.003330	0	0
PAAF1	80227	broad.mit.edu	37	11	73620606	73620606	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:73620606C>T	uc001ouk.1	+	7	729	c.695C>T	c.(694-696)TCC>TTC	p.S232F	PAAF1_uc001oul.1_Missense_Mutation_p.S215F|PAAF1_uc009ytx.1_RNA|PAAF1_uc001oum.1_Missense_Mutation_p.S215F	NM_025155	NP_079431	Q9BRP4	PAAF1_HUMAN	proteasomal ATPase-associated factor 1	232					interspecies interaction between organisms	proteasome complex	protein binding			ovary(1)|skin(1)	2	Breast(11;7.42e-05)					GCTGACAACTCCATAAACCTT	0.488													38	46					0	0	0.009718	0	0
CHRDL2	25884	broad.mit.edu	37	11	74424495	74424495	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:74424495G>A	uc001ovi.2	-	3	478	c.225C>T	c.(223-225)CAC>CAT	p.H75H	CHRDL2_uc001ovg.2_Intron|CHRDL2_uc001ovh.2_Silent_p.H75H|CHRDL2_uc001ovk.1_Silent_p.H75H			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	75	VWFC 1.				cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					CAGGCGGACAGTGGAGGCGGT	0.592													18	40					0	0	0.010504	0	0
GDPD5	81544	broad.mit.edu	37	11	75160033	75160033	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:75160033C>T	uc001owo.3	-	10	1240	c.703G>A	c.(703-705)GGG>AGG	p.G235R	GDPD5_uc001owp.3_Missense_Mutation_p.G235R|GDPD5_uc001own.3_5'UTR|GDPD5_uc009yuc.2_Missense_Mutation_p.G97R|GDPD5_uc009yud.2_Missense_Mutation_p.G116R|GDPD5_uc009yue.1_Missense_Mutation_p.G123R	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	235	Extracellular (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						ATGGGGGCCCCGCGGTGGCCA	0.607													17	16					0	0	0.006122	0	0
MAP6	4135	broad.mit.edu	37	11	75319327	75319327	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:75319327G>A	uc001owu.2	-	2	1011	c.946C>T	c.(946-948)CCA>TCA	p.P316S	MAP6_uc001owv.2_Missense_Mutation_p.P316S	NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	316	Calmodulin-binding (By similarity).|Mn 3.					Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					GCCTTTATTGGTTTCACAGGC	0.483													30	44					0	0	0.003755	0	0
WNT11	7481	broad.mit.edu	37	11	75902750	75902750	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:75902750G>A	uc001oxe.2	-	4	871	c.748C>T	c.(748-750)CGA>TGA	p.R250*	WNT11_uc001oxf.1_Nonsense_Mutation_p.R250*	NM_004626	NP_004617	O96014	WNT11_HUMAN	wingless-type MMTV integration site family,	250					adrenal gland development|anterior/posterior pattern formation|artery morphogenesis|axis specification|bone mineralization|cellular response to retinoic acid|cloacal septation|embryonic skeletal system development|endoderm development|lung-associated mesenchyme development|mesonephric duct development|negative regulation of apoptosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell migration|negative regulation of transcription, DNA-dependent|neuroendocrine cell differentiation|neuron differentiation|osteoblast differentiation|outflow tract morphogenesis|palate development|positive regulation of cell migration|positive regulation of protein kinase C signaling cascade|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor-beta2 production|protein localization at cell surface|protein phosphorylation|tight junction assembly|ureteric bud morphogenesis|ventricular septum morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|protein kinase activator activity|Ras GTPase activator activity|transcription regulatory region DNA binding			lung(1)|skin(1)	2						CCCATGGGTCGGTGCACTACC	0.617													50	72					0	0	0.003610	0	0
KCTD14	65987	broad.mit.edu	37	11	77728170	77728170	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:77728170G>A	uc001oyw.3	-	2	262	c.237C>T	c.(235-237)ATC>ATT	p.I79I		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	79	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			TGGGGCGGTCGATGAAGAAGC	0.597													10	37					0	0	0.008291	0	0
ODZ4	26011	broad.mit.edu	37	11	78383099	78383099	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:78383099C>T	uc001ozl.3	-	31	6235	c.5772G>A	c.(5770-5772)TGG>TGA	p.W1924*	ODZ4_uc001ozk.3_Nonsense_Mutation_p.W149*|ODZ4_uc009yvb.1_Nonsense_Mutation_p.W508*	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1924	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATGTGTAGCTCCATGTCTTCC	0.547													14	15					0	0	0.003163	0	0
C11orf82	220042	broad.mit.edu	37	11	82625826	82625826	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:82625826C>T	uc001ozt.2	+	3	290	c.46C>T	c.(46-48)CAG>TAG	p.Q16*	C11orf82_uc010rsr.1_5'UTR|C11orf82_uc010rss.1_5'UTR|C11orf82_uc009yvd.2_Nonsense_Mutation_p.Q16*	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	16					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						ACTTGCTCTCCAGAATTCAAG	0.398													6	30					0	0	0.001168	0	0
CCDC81	60494	broad.mit.edu	37	11	86097144	86097144	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:86097144C>T	uc001pbx.1	+	2	559	c.131C>T	c.(130-132)ACC>ATC	p.T44I	CCDC81_uc001pbw.1_Missense_Mutation_p.T44I	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	44										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				CGGCAGTTAACCCTGCACAAG	0.289													7	15					0	0	0.003080	0	0
GRM5	2915	broad.mit.edu	37	11	88781001	88781001	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:88781001C>T	uc001pcq.2	-	1	240	c.40G>A	c.(40-42)GAA>AAA	p.E14K	GRM5_uc009yvm.2_Missense_Mutation_p.E14K|GRM5_uc009yvn.1_Missense_Mutation_p.E14K	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	14					activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	CGGACATCTTCTTTCAAAAGT	0.478													14	26					0	0	0.004007	0	0
TYR	7299	broad.mit.edu	37	11	89017984	89017985	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:89017984_89017985GT>AA	uc001pcs.2	+	4	1310_1311	c.1228_1229GT>AA	c.(1228-1230)GTT>AAT	p.V410N		NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor	410	Lumenal, melanosome (Potential).				eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	TCTTCAAGAAGTTTATCCAGAA	0.386									Oculocutaneous_Albinism				16	45					0	0	0.004672	0	0
NOX4	50507	broad.mit.edu	37	11	89088167	89088167	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:89088167C>T	uc001pct.2	-	13	1419	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	NOX4_uc009yvr.2_Missense_Mutation_p.E369K|NOX4_uc001pcu.2_Missense_Mutation_p.E320K|NOX4_uc001pcw.2_Missense_Mutation_p.E87K|NOX4_uc001pcx.2_Missense_Mutation_p.E87K|NOX4_uc001pcv.2_Missense_Mutation_p.E394K|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_Missense_Mutation_p.E228K|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Missense_Mutation_p.E370K|NOX4_uc009yvq.2_Missense_Mutation_p.E370K	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	394	FAD-binding FR-type.|Extracellular (Potential).|Mediates interaction with TLR4.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				GGCAGAATTTCGGAGTCTTGA	0.378													5	21					0	0	0.001168	0	0
FAT3	120114	broad.mit.edu	37	11	92086953	92086953	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:92086953G>A	uc001pdj.3	+	1	1692	c.1675G>A	c.(1675-1677)GAA>AAA	p.E559K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	559	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATACCGCCATGAAAGTGAGGT	0.423										TCGA Ovarian(4;0.039)			166	353					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92257829	92257829	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:92257829C>T	uc001pdj.3	+	2	3339	c.3322C>T	c.(3322-3324)CGG>TGG	p.R1108W		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1108	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CATTCTTGATCGGGAGACAAT	0.438										TCGA Ovarian(4;0.039)			126	241					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92534496	92534496	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:92534496C>T	uc001pdj.3	+	9	8334	c.8317C>T	c.(8317-8319)CGT>TGT	p.R2773C		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2773	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACGCCTTGACCGTGAAACCAG	0.443										TCGA Ovarian(4;0.039)			90	329					0	0	0.003610	0	0
C11orf54	28970	broad.mit.edu	37	11	93480597	93480597	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:93480597T>G	uc009ywi.2	+	3	369	c.38T>G	c.(37-39)CTT>CGT	p.L13R	C11orf54_uc001pee.1_Missense_Mutation_p.L13R|C11orf54_uc001pef.2_Missense_Mutation_p.L13R|C11orf54_uc001peg.2_Missense_Mutation_p.L13R|C11orf54_uc001peh.2_Missense_Mutation_p.L13R|C11orf54_uc001pei.2_Intron|C11orf54_uc001pej.2_5'Flank	NM_014039	NP_054758	Q9H0W9	CK054_HUMAN	hypothetical protein LOC28970	13						nucleus	hydrolase activity, acting on ester bonds|protein binding|zinc ion binding				0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GTACCAAGTCTTGAAGAGCTT	0.313													7	44					0	0	0.004482	0	0
GPR83	10888	broad.mit.edu	37	11	94126696	94126696	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:94126696G>A	uc001pet.2	-	3	774	c.602C>T	c.(601-603)TCA>TTA	p.S201L		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	201	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ATGTGGGAGTGAAAAGAACGT	0.473													5	39					0	0	0.001168	0	0
ENDOD1	23052	broad.mit.edu	37	11	94862153	94862153	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:94862153C>T	uc001pfh.2	+	2	988	c.913C>T	c.(913-915)CTT>TTT	p.L305F		NM_015036	NP_055851	O94919	ENDD1_HUMAN	endonuclease domain containing 1 precursor	305						extracellular region	endonuclease activity|metal ion binding|nucleic acid binding				0		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.00824)				TTCTAGTCCCCTTTCTAGCAC	0.448													22	29					0	0	0.002299	0	0
CNTN5	53942	broad.mit.edu	37	11	100126491	100126491	+	Splice_Site	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:100126491G>A	uc001pga.2	+	17	2345	c.2006_splice	c.e17-1	p.G669_splice	CNTN5_uc001pfz.2_Splice_Site_p.G669_splice|CNTN5_uc001pgb.2_Splice_Site_p.G595_splice|CNTN5_uc010ruk.1_Splice_Site	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long						cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TTGACCTATAGGACCCCCAGG	0.448													11	41					0	0	0.001368	0	0
CNTN5	53942	broad.mit.edu	37	11	100126511	100126511	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:100126511G>A	uc001pga.2	+	17	2364	c.2025G>A	c.(2023-2025)GGG>GGA	p.G675G	CNTN5_uc001pfz.2_Silent_p.G675G|CNTN5_uc001pgb.2_Silent_p.G601G|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	675	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GCCCACCTGGGATAGTAATTG	0.458													16	43					0	0	0.006122	0	0
KIAA1377	57562	broad.mit.edu	37	11	101857743	101857743	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:101857743C>T	uc001pgm.2	+	9	3485	c.3215C>T	c.(3214-3216)TCC>TTC	p.S1072F	KIAA1377_uc001pgn.2_Missense_Mutation_p.S1028F|KIAA1377_uc010run.1_Missense_Mutation_p.S873F	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	1072							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		ATCCTAGAGTCCCTTAATGAT	0.299													6	33					0	0	0.003080	0	0
MMP27	64066	broad.mit.edu	37	11	102567566	102567566	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:102567566C>T	uc001phd.1	-	5	643	c.620G>A	c.(619-621)GGA>GAA	p.G207E		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	207					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CAAGTTGAATCCTTGATAATA	0.403													11	14					0	0	0.000978	0	0
MMP27	64066	broad.mit.edu	37	11	102573832	102573832	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:102573832G>A	uc001phd.1	-	3	382	c.359C>T	c.(358-360)CCG>CTG	p.P120L		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	120					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		TGCCATATCCGGAGTATAGTT	0.348													10	32					0	0	0.006214	0	0
MMP8	4317	broad.mit.edu	37	11	102587050	102587050	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:102587050T>C	uc001phe.2	-	6	984	c.885A>G	c.(883-885)ATA>ATG	p.I295M	MMP8_uc010rut.1_Missense_Mutation_p.I230M|MMP8_uc010ruu.1_Missense_Mutation_p.I272M	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	295	Hemopexin-like 1.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		TAAAGAAAAGTATTTCTCCAC	0.393													19	97					0	0	0.006122	0	0
MMP8	4317	broad.mit.edu	37	11	102592240	102592240	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:102592240G>A	uc001phe.2	-	4	613	c.514C>T	c.(514-516)CCA>TCA	p.P172S	MMP8_uc010rut.1_Missense_Mutation_p.P107S|MMP8_uc010ruu.1_Missense_Mutation_p.P149S	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	172					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		CCATCAAATGGAGAATTGTCA	0.433													8	42					0	0	0.003080	0	0
MMP1	4312	broad.mit.edu	37	11	102667484	102667484	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:102667484C>T	uc001phi.2	-	4	679	c.536G>A	c.(535-537)GGA>GAA	p.G179E	uc001phh.1_Intron|MMP1_uc010ruv.1_Missense_Mutation_p.G113E	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	179	Metalloprotease.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		AGCAAGATTTCCTCCAGGTCC	0.438													13	23					0	0	0.002450	0	0
CASP5	838	broad.mit.edu	37	11	104874035	104874035	+	Missense_Mutation	SNP	T	A	A	rs143600313		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:104874035T>A	uc010rva.1	-	4	541	c.509A>T	c.(508-510)GAA>GTA	p.E170V	CASP5_uc010ruz.1_Missense_Mutation_p.E183V|CASP5_uc010rvb.1_Missense_Mutation_p.E112V|CASP5_uc010rvc.1_Missense_Mutation_p.E28V|CASP5_uc009yxh.2_Intron|CASP5_uc010rvd.1_Intron	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	170					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		TCTCAGGAATTCTTCACGAGG	0.388													23	63					0	0	0.005443	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106810191	106810191	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:106810191C>T	uc001pjg.1	-	4	1591	c.1201G>A	c.(1201-1203)GAC>AAC	p.D401N	GUCY1A2_uc010rvo.1_Missense_Mutation_p.D401N|GUCY1A2_uc009yxn.1_Missense_Mutation_p.D401N	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	401					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		CTTACCTTGTCTTTATTTTCA	0.423													24	97					0	0	0.005443	0	0
EXPH5	23086	broad.mit.edu	37	11	108409889	108409889	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:108409889C>T	uc001pkk.2	-	3	416	c.305G>A	c.(304-306)AGA>AAA	p.R102K	EXPH5_uc010rvy.1_5'Flank|EXPH5_uc010rvz.1_5'Flank|EXPH5_uc010rwa.1_Missense_Mutation_p.R26K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	102					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		ATTTTTAGATCTTGATGTAGG	0.338													27	49					0	0	0.007291	0	0
BCO2	83875	broad.mit.edu	37	11	112064319	112064319	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:112064319G>A	uc001pnf.2	+	3	533	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	BCO2_uc001pne.1_5'UTR|BCO2_uc001png.2_Missense_Mutation_p.R139Q|BCO2_uc001pnh.2_Missense_Mutation_p.R105Q|BCO2_uc010rwt.1_Missense_Mutation_p.R34Q|BCO2_uc009yyn.2_Missense_Mutation_p.R105Q|BCO2_uc001pni.2_Missense_Mutation_p.R105Q	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	139					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCTAAAAACCGAATTGTGATC	0.463													7	33					0	0	0.001984	0	0
HTR3B	9177	broad.mit.edu	37	11	113803129	113803129	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:113803129C>T	uc001pok.2	+	5	554	c.487C>T	c.(487-489)CCA>TCA	p.P163S	HTR3B_uc001pol.2_Missense_Mutation_p.P152S	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	163	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		ATATGCTTTTCCATTTGATGT	0.453													15	49					0	0	0.003163	0	0
FAM55A	120400	broad.mit.edu	37	11	114393812	114393812	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:114393812C>T	uc001ppa.2	-	5	888	c.471G>A	c.(469-471)AAG>AAA	p.K157K	FAM55A_uc010rxd.1_Splice_Site_p.R7_splice	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	299						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		TTTTTTCTCTCTCTGGTAACA	0.398													4	14					0	0	0.009096	0	0
APOC3	345	broad.mit.edu	37	11	116701499	116701499	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:116701499G>A	uc001ppt.1	+	3	112	c.66G>A	c.(64-66)GAG>GAA	p.E22E		NM_000040	NP_000031	P02656	APOC3_HUMAN	apolipoprotein C-III precursor	22					Cdc42 protein signal transduction|cholesterol efflux|cholesterol homeostasis|chylomicron remnant clearance|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle remodeling|lipoprotein metabolic process|negative regulation of cholesterol import|negative regulation of fatty acid biosynthetic process|negative regulation of high-density lipoprotein particle clearance|negative regulation of lipoprotein lipase activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor-mediated endocytosis|negative regulation of triglyceride catabolic process|negative regulation of very-low-density lipoprotein particle clearance|negative regulation of very-low-density lipoprotein particle remodeling|phospholipid efflux|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle assembly	chylomicron|intermediate-density lipoprotein particle|spherical high-density lipoprotein particle|very-low-density lipoprotein particle	high-density lipoprotein particle receptor binding|lipase inhibitor activity|phospholipid binding				0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		GAGCTTCAGAGGCCGAGGATG	0.622													62	119					0	0	0.003610	0	0
SIK3	23387	broad.mit.edu	37	11	116827673	116827673	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:116827673C>T	uc001ppy.2	-	2	243	c.207G>A	c.(205-207)AGG>AGA	p.R69R	SIK3_uc001ppz.2_5'UTR|SIK3_uc001pqa.2_Silent_p.R69R	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	69	Protein kinase.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						CCTGGTAGAGCCTGATGATAT	0.418													85	348					0	0	0.003610	0	0
TMPRSS4	56649	broad.mit.edu	37	11	117982500	117982500	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:117982500G>A	uc010rxo.1	+	8	919	c.628G>A	c.(628-630)GAG>AAG	p.E210K	TMPRSS4_uc010rxp.1_Missense_Mutation_p.E205K|TMPRSS4_uc010rxq.1_Missense_Mutation_p.E63K|TMPRSS4_uc010rxr.1_Missense_Mutation_p.E185K|TMPRSS4_uc010rxs.1_Missense_Mutation_p.E170K|TMPRSS4_uc009yzu.2_RNA|TMPRSS4_uc010rxt.1_Missense_Mutation_p.E185K	NM_019894	NP_063947	Q9NRS4	TMPS4_HUMAN	transmembrane protease, serine 4 isoform 1	210	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0431)|all_hematologic(192;0.164)|Breast(348;0.183)|all_neural(223;0.238)		BRCA - Breast invasive adenocarcinoma(274;4.16e-05)|Epithelial(105;0.00204)		GGGTGTGGAGGAGGCCTCTGT	0.632													13	40					0	0	0.001855	0	0
MLL	4297	broad.mit.edu	37	11	118359392	118359392	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:118359392C>T	uc001pta.2	+	11	4419	c.4396C>T	c.(4396-4398)CCT>TCT	p.P1466S	MLL_uc001ptb.2_Missense_Mutation_p.P1466S|MLL_uc001pte.1_RNA	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1466	PHD-type 1.				apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GAACGAGCGCCCTCTGGAGGA	0.433			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								30	31					0	0	0.002096	0	0
BCL9L	283149	broad.mit.edu	37	11	118770888	118770888	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:118770888G>A	uc001pug.2	-	7	4109	c.3144C>T	c.(3142-3144)GGC>GGT	p.G1048G	BCL9L_uc009zal.2_Silent_p.G1043G	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1048	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		TGCTCCGGGGGCCGCTAGGCG	0.627													21	32					0	0	0.001882	0	0
BCL9L	283149	broad.mit.edu	37	11	118770898	118770898	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:118770898G>A	uc001pug.2	-	7	4099	c.3134C>T	c.(3133-3135)CCG>CTG	p.P1045L	BCL9L_uc009zal.2_Missense_Mutation_p.P1040L	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1045	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GCCGCTAGGCGGGAGGGTACC	0.627													13	25					0	0	0.003163	0	0
TECTA	7007	broad.mit.edu	37	11	120989023	120989023	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:120989023C>T	uc010rzo.1	+	6	799	c.799C>T	c.(799-801)CTT>TTT	p.L267F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	267	VWFC.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		AGGACAATTCCTTCGGCGAGG	0.318													14	46					0	0	0.003163	0	0
HSPA8	3312	broad.mit.edu	37	11	122930831	122930831	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:122930831T>G	uc001pyo.2	-	4	635	c.557A>C	c.(556-558)GAC>GCC	p.D186A	HSPA8_uc009zbc.2_5'UTR|HSPA8_uc001pyp.2_Missense_Mutation_p.D186A|HSPA8_uc010rzu.1_Missense_Mutation_p.D109A|HSPA8_uc009zbd.1_Missense_Mutation_p.D186A|HSPA8_uc010rzv.1_Missense_Mutation_p.D186A	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	186	Interaction with BAG1.				cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TACCTTTTTGTCTAAGCCGTA	0.373													23	36					0	0	0.002780	0	0
OR6X1	390260	broad.mit.edu	37	11	123624553	123624553	+	Missense_Mutation	SNP	C	T	T	rs140203672	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:123624553C>T	uc010rzy.1	-	1	674	c.674G>A	c.(673-675)CGA>CAA	p.R225Q		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TGAAGGAATTCGTAGGATTGC	0.473													10	53					0	0	0.008291	0	0
OR4D5	219875	broad.mit.edu	37	11	123811214	123811214	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:123811214C>T	uc001pzk.1	+	1	891	c.891C>T	c.(889-891)GCC>GCT	p.A297A		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TGATCATGGCCATGAAGAAGC	0.498													45	79					0	0	0.003610	0	0
OR10G7	390265	broad.mit.edu	37	11	123909443	123909443	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:123909443C>T	uc001pzq.1	-	1	266	c.266G>A	c.(265-267)AGG>AAG	p.R89K		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGAGATAGTCCTGCCGCTTGG	0.522													27	233					0	0	0.008361	0	0
OR8D1	283159	broad.mit.edu	37	11	124179743	124179743	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:124179743C>T	uc010sag.1	-	1	920	c.920G>A	c.(919-921)GGA>GAA	p.G307E		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GACTCATTTTCCTACTAAGAC	0.368													15	31					0	0	0.003163	0	0
CCDC15	80071	broad.mit.edu	37	11	124857470	124857470	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:124857470C>T	uc001qbm.3	+	8	1607	c.1348C>T	c.(1348-1350)CTA>TTA	p.L450L		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	450				L -> P (in Ref. 3; BAB14504).		centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CCAGGACTTCCTACCCAGAGA	0.408													29	64					0	0	0.006320	0	0
STT3A	3703	broad.mit.edu	37	11	125478009	125478009	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:125478009C>T	uc001qcd.2	+	9	896	c.786C>T	c.(784-786)GTC>GTT	p.V262V	STT3A_uc009zbm.2_Silent_p.V262V|STT3A_uc001qce.2_Silent_p.V262V|STT3A_uc010sbg.1_Silent_p.V170V|STT3A_uc009zbn.2_Silent_p.V36V	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	262	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		TACAGCCTGTCCTTTCATCAG	0.423													54	123					0	0	0.003610	0	0
KIRREL3	84623	broad.mit.edu	37	11	126432784	126432784	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:126432784A>T	uc001qea.2	-	2	440	c.79T>A	c.(79-81)TGC>AGC	p.C27S	KIRREL3_uc001qeb.2_Missense_Mutation_p.C27S|KIRREL3_uc001qec.1_Missense_Mutation_p.C27S|KIRREL3_uc001qed.3_RNA	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	27	Extracellular (Potential).				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		ACCAGACAGCATCCTCTCTTC	0.567													13	37					0	0	0.003163	0	0
FLI1	2313	broad.mit.edu	37	11	128677124	128677124	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:128677124G>A	uc010sbu.1	+	7	1112	c.771G>A	c.(769-771)CGG>CGA	p.R257R	FLI1_uc010sbt.1_Silent_p.R64R|FLI1_uc010sbv.1_Silent_p.R224R|FLI1_uc009zci.2_Silent_p.R191R	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	257					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		CAGAGCAACGGCCCCAGCCAG	0.512			T	EWSR1	Ewing sarcoma								5	12					0	0	0.001984	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709855	128709855	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:128709855G>A	uc001qeo.1	-	2	392	c.341C>T	c.(340-342)CCT>CTT	p.P114L	KCNJ1_uc001qep.1_Missense_Mutation_p.P95L|KCNJ1_uc001qeq.1_Missense_Mutation_p.P95L|KCNJ1_uc001qer.1_Missense_Mutation_p.P95L|KCNJ1_uc001qes.1_Missense_Mutation_p.P95L	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	114	Extracellular (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	ATTGGCAGAAGGATGGAATTC	0.453													16	39					0	0	0.003163	0	0
IGSF9B	22997	broad.mit.edu	37	11	133800931	133800931	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:133800931G>A	uc001qgx.3	-	11	1698	c.1467C>T	c.(1465-1467)GTC>GTT	p.V489V	IGSF9B_uc001qgy.1_Silent_p.V331V	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	489	Extracellular (Potential).|Ig-like 5.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CGTTGGTGGCGACACATTCCC	0.662													6	32					0	0	0.001168	0	0
IGSF9B	22997	broad.mit.edu	37	11	133801430	133801430	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:133801430T>A	uc001qgx.3	-	10	1517	c.1286A>T	c.(1285-1287)GAG>GTG	p.E429V	IGSF9B_uc001qgy.1_Missense_Mutation_p.E271V	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	429	Extracellular (Potential).|Ig-like 5.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CTGCCTGTACTCCCAGCCTGG	0.652													11	39					0	0	0.001368	0	0
B3GAT1	27087	broad.mit.edu	37	11	134257550	134257550	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr11:134257550G>A	uc001qhq.2	-	3	265	c.4C>T	c.(4-6)CCG>TCG	p.P2S	B3GAT1_uc001qhr.2_Missense_Mutation_p.P2S|B3GAT1_uc010scv.1_Missense_Mutation_p.P15S	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	2	Cytoplasmic (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		CGTCTCTTCGGCATCTCCAAG	0.642													12	24					0	0	0.000978	0	0
WNK1	65125	broad.mit.edu	37	12	988837	988837	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:988837C>T	uc001qio.3	+	11	2979	c.2472C>T	c.(2470-2472)TTC>TTT	p.F824F	WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	824					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GTGCTCATTTCCTTCCAGTGG	0.542													26	78					0	0	0.004656	0	0
CACNA1C	775	broad.mit.edu	37	12	2595388	2595388	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:2595388G>A	uc009zdu.1	+	6	1189	c.876G>A	c.(874-876)GGG>GGA	p.G292G	CACNA1C_uc009zdv.1_Silent_p.G292G|CACNA1C_uc001qkb.2_Silent_p.G292G|CACNA1C_uc001qkc.2_Silent_p.G292G|CACNA1C_uc001qke.2_Silent_p.G292G|CACNA1C_uc001qkf.2_Silent_p.G292G|CACNA1C_uc001qjz.2_Silent_p.G292G|CACNA1C_uc001qkd.2_Silent_p.G292G|CACNA1C_uc001qkg.2_Silent_p.G292G|CACNA1C_uc009zdw.1_Silent_p.G292G|CACNA1C_uc001qkh.2_Silent_p.G292G|CACNA1C_uc001qkl.2_Silent_p.G292G|CACNA1C_uc001qkn.2_Silent_p.G292G|CACNA1C_uc001qko.2_Silent_p.G292G|CACNA1C_uc001qkp.2_Silent_p.G292G|CACNA1C_uc001qkr.2_Silent_p.G292G|CACNA1C_uc001qku.2_Silent_p.G292G|CACNA1C_uc001qkq.2_Silent_p.G292G|CACNA1C_uc001qks.2_Silent_p.G292G|CACNA1C_uc001qkt.2_Silent_p.G292G|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_Silent_p.G28G|CACNA1C_uc001qkj.1_Silent_p.G28G|CACNA1C_uc001qkk.1_Silent_p.G28G|CACNA1C_uc001qkm.1_Silent_p.G28G	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	292	I.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCTTCATGGGGAAGATGCACA	0.577													20	48					0	0	0.010504	0	0
CACNA1C	775	broad.mit.edu	37	12	2797694	2797694	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:2797694C>T	uc009zdu.1	+	49	6428	c.6115C>T	c.(6115-6117)CCA>TCA	p.P2039S	CACNA1C_uc009zdv.1_Missense_Mutation_p.P1953S|CACNA1C_uc001qkb.2_Missense_Mutation_p.P1956S|CACNA1C_uc001qkc.2_Missense_Mutation_p.P1975S|CACNA1C_uc001qke.2_Missense_Mutation_p.P1945S|CACNA1C_uc001qkf.2_Missense_Mutation_p.P1964S|CACNA1C_uc001qjz.2_Missense_Mutation_p.P1956S|CACNA1C_uc001qkd.2_Missense_Mutation_p.P1975S|CACNA1C_uc001qkg.2_Missense_Mutation_p.P1962S|CACNA1C_uc009zdw.1_Missense_Mutation_p.P1997S|CACNA1C_uc001qkh.2_Missense_Mutation_p.P1964S|CACNA1C_uc001qkl.2_Missense_Mutation_p.P2004S|CACNA1C_uc001qkn.2_Missense_Mutation_p.P1956S|CACNA1C_uc001qko.2_Missense_Mutation_p.P1976S|CACNA1C_uc001qkp.2_Missense_Mutation_p.P1956S|CACNA1C_uc001qkr.2_Missense_Mutation_p.P1973S|CACNA1C_uc001qku.2_Missense_Mutation_p.P1991S|CACNA1C_uc001qkq.2_Missense_Mutation_p.P1984S|CACNA1C_uc001qks.2_Missense_Mutation_p.P1956S|CACNA1C_uc001qkt.2_Missense_Mutation_p.P1975S|CACNA1C_uc001qki.1_Missense_Mutation_p.P1763S|CACNA1C_uc001qkj.1_Missense_Mutation_p.P1727S|CACNA1C_uc001qkk.1_Missense_Mutation_p.P1692S|CACNA1C_uc001qkm.1_Missense_Mutation_p.P1752S|CACNA1C_uc010sea.1_Missense_Mutation_p.P647S|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Missense_Mutation_p.P274S	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	2039	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TGCCACCCCACCAGCCACACC	0.647													36	56					0	0	0.004878	0	0
AKAP3	10566	broad.mit.edu	37	12	4725009	4725009	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:4725009C>T	uc001qnb.3	-	5	2687	c.2458G>A	c.(2458-2460)GTT>ATT	p.V820I		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	820					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						GACTGCAGAACCTCGCCCACA	0.567													33	77					0	0	0.004289	0	0
AKAP3	10566	broad.mit.edu	37	12	4736646	4736646	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:4736646G>A	uc001qnb.3	-	4	1651	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	474					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						CTGCATGCTGGAAACCTAGAG	0.463													5	30					0	0	0.004482	0	0
AKAP3	10566	broad.mit.edu	37	12	4737061	4737061	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:4737061G>A	uc001qnb.3	-	4	1236	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	336					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						CCTCAAGAAGGAGTCGATGAG	0.483													18	33					0	0	0.006122	0	0
GALNT8	26290	broad.mit.edu	37	12	4829865	4829865	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:4829865C>T	uc001qne.1	+	1	114	c.22C>T	c.(22-24)CCC>TCC	p.P8S		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	8	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						GAGGAAACTCCCCAAAGCCCT	0.502													21	60					0	0	0.003330	0	0
GALNT8	26290	broad.mit.edu	37	12	4854713	4854713	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:4854713T>C	uc001qne.1	+	5	1071	c.979T>C	c.(979-981)TTT>CTT	p.F327L		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	327	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						AGTTGATGGGTTTAACTGGGA	0.488													14	30					0	0	0.002450	0	0
KCNA5	3741	broad.mit.edu	37	12	5154633	5154633	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:5154633C>T	uc001qni.2	+	1	1549	c.1320C>T	c.(1318-1320)TTC>TTT	p.F440F		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	440	Helical; Name=Segment S5; (Potential).					Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						TCATCTTCTTCCTCTTCATCG	0.587													11	32					0	0	0.003163	0	0
VWF	7450	broad.mit.edu	37	12	6220133	6220133	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:6220133C>T	uc001qnn.1	-	4	472	c.222G>A	c.(220-222)GGG>GGA	p.G74G	VWF_uc010set.1_Silent_p.G74G|VWF_uc001qno.1_Silent_p.G111G	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	74	VWFD 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TCTGGAAGTCCCCTGAAAGAG	0.388													23	62					0	0	0.002299	0	0
CHD4	1108	broad.mit.edu	37	12	6682350	6682350	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:6682350A>G	uc001qpo.2	-	38	5611	c.5447T>C	c.(5446-5448)ATG>ACG	p.M1816T	CHD4_uc001qpn.2_Missense_Mutation_p.M1809T|CHD4_uc001qpp.2_Missense_Mutation_p.M1841T	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1816	Required for interaction with PCNT.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						GTTGAGGGCCATGGAAGGGTG	0.532													31	97					0	0	0.002445	0	0
PTPN6	5777	broad.mit.edu	37	12	7064084	7064084	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:7064084C>T	uc001qsb.2	+	4	685	c.443C>T	c.(442-444)TCT>TTT	p.S148F	PTPN6_uc001qsa.1_Missense_Mutation_p.S150F|PTPN6_uc010sfr.1_Missense_Mutation_p.S109F|PTPN6_uc009zfl.1_Missense_Mutation_p.S148F|PTPN6_uc010sfs.1_Missense_Mutation_p.S136F	NM_002831	NP_002822	P29350	PTN6_HUMAN	protein tyrosine phosphatase, non-receptor type	148	SH2 2.				apoptosis|cell junction assembly|G-protein coupled receptor protein signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|negative regulation of peptidyl-tyrosine phosphorylation|platelet activation|positive regulation of cell proliferation|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of G1/S transition of mitotic cell cycle|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol|membrane|nucleus	protein binding|protein tyrosine phosphatase activity			breast(1)	1						TTCGTGCTTTCTGTGCTCAGT	0.657													24	67					0	0	0.004656	0	0
PTPN6	5777	broad.mit.edu	37	12	7065701	7065701	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:7065701C>T	uc001qsb.2	+	9	1286	c.1044C>T	c.(1042-1044)GTC>GTT	p.V348V	PTPN6_uc001qsa.1_Silent_p.V350V|PTPN6_uc010sfr.1_Silent_p.V309V|PTPN6_uc009zfl.1_Silent_p.V348V|PTPN6_uc010sfs.1_Silent_p.V336V	NM_002831	NP_002822	P29350	PTN6_HUMAN	protein tyrosine phosphatase, non-receptor type	348	Tyrosine-protein phosphatase.				apoptosis|cell junction assembly|G-protein coupled receptor protein signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|negative regulation of peptidyl-tyrosine phosphorylation|platelet activation|positive regulation of cell proliferation|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of G1/S transition of mitotic cell cycle|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol|membrane|nucleus	protein binding|protein tyrosine phosphatase activity			breast(1)	1						GTGTCATCGTCATGACCACCC	0.607													18	61					0	0	0.001882	0	0
PTPN6	5777	broad.mit.edu	37	12	7069123	7069123	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:7069123C>T	uc001qsb.2	+	12	1637	c.1395C>T	c.(1393-1395)GTC>GTT	p.V465V	PTPN6_uc001qsa.1_Silent_p.V467V|PTPN6_uc010sfr.1_Silent_p.V426V|PTPN6_uc009zfl.1_Silent_p.V465V|PTPN6_uc010sfs.1_Silent_p.V453V	NM_002831	NP_002822	P29350	PTN6_HUMAN	protein tyrosine phosphatase, non-receptor type	465	Tyrosine-protein phosphatase.				apoptosis|cell junction assembly|G-protein coupled receptor protein signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|negative regulation of peptidyl-tyrosine phosphorylation|platelet activation|positive regulation of cell proliferation|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of G1/S transition of mitotic cell cycle|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol|membrane|nucleus	protein binding|protein tyrosine phosphatase activity			breast(1)	1						CCATCATTGTCATCGACATGC	0.667													38	116					0	0	0.002522	0	0
Unknown	0	broad.mit.edu	37	12	8050875	8050875	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:8050875C>T	uc001qtp.1	+	3	338	c.258C>T	c.(256-258)TTC>TTT	p.F86F	uc001qtq.1_5'Flank					RecName: Full=Putative homeobox protein NANOG2;																		agacctggttccagaaccaga	0.104													9	9					0	0	0.001368	0	0
CLEC4D	338339	broad.mit.edu	37	12	8671612	8671612	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:8671612C>T	uc001qun.2	+	4	433	c.240C>T	c.(238-240)ACC>ACT	p.T80T		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	80	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					GAGGGAGCACCTGGAACTGTT	0.398													7	15					0	0	0.004482	0	0
A2ML1	144568	broad.mit.edu	37	12	8976444	8976444	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:8976444G>A	uc001quz.3	+	3	473	c.375G>A	c.(373-375)CAG>CAA	p.Q125Q		NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	Error:Variant_position_missing_in_B3KVV6_after_alignment						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CCTTTGTACAGACTGACAAAC	0.502													25	49					0	0	0.008361	0	0
A2ML1	144568	broad.mit.edu	37	12	8995744	8995744	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:8995744G>A	uc001quz.3	+	12	1361	c.1263G>A	c.(1261-1263)ATG>ATA	p.M421I	A2ML1_uc001qva.1_Missense_Mutation_p.M1I|A2ML1_uc010sgm.1_5'Flank	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	265						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						AGTTTCAAATGGAAGACTTAG	0.453													22	40					0	0	0.002299	0	0
TAS2R13	50838	broad.mit.edu	37	12	11061051	11061051	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:11061051G>A	uc001qzg.1	-	1	1111	c.847C>T	c.(847-849)CTA>TTA	p.L283L	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron	NM_023920	NP_076409	Q9NYV9	T2R13_HUMAN	taste receptor, type 2, member 13	283	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			breast(1)|skin(1)	2						GCGTTTCCTAGAATCAGAAGA	0.428													20	24					0	0	0.010504	0	0
TAS2R14	50840	broad.mit.edu	37	12	11091096	11091096	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:11091096G>A	uc010shi.1	-	1	711	c.711C>T	c.(709-711)TTC>TTT	p.F237F	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_RNA	NM_023922	NP_076411	Q9NYV8	T2R14_HUMAN	taste receptor, type 2, member 14	237	Helical; Name=6; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste		bitter taste receptor activity				0						CATAGAGTAGGAAGAAAGTGA	0.433													19	20					0	0	0.007413	0	0
TAS2R43	259289	broad.mit.edu	37	12	11244107	11244107	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:11244107T>C	uc001qzq.1	-	1	806	c.722A>G	c.(721-723)TAC>TGC	p.Y241C	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176884	NP_795365	P59537	T2R43_HUMAN	taste receptor, type 2, member 43	241	Helical; Name=6; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	cilium membrane|motile cilium	bitter taste receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0344)	BRCA - Breast invasive adenocarcinoma(232;0.196)		GGACAGAAAGTAAATGGCACA	0.403													74	56					0	0	0.003610	0	0
TAS2R42	353164	broad.mit.edu	37	12	11339534	11339534	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:11339534C>T	uc001qzr.1	-	1	10	c.10G>A	c.(10-12)GAA>AAA	p.E4K	PRB4_uc001qzf.1_Intron	NM_181429	NP_852094	Q7RTR8	T2R42_HUMAN	taste receptor, type 2, member 42	4	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0455)			TTGTCCAATTCGGTGGCCATC	0.368													31	43					0	0	0.002096	0	0
PRB1	5542	broad.mit.edu	37	12	11506643	11506643	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:11506643G>A	uc001qzw.1	-	3	431	c.394C>T	c.(394-396)CCC>TCC	p.P132S	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	193	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGAGGTGGGGGACCTTGAGGT	0.617													56	105					0	0	0.003610	0	0
PRB1	5542	broad.mit.edu	37	12	11506697	11506697	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:11506697G>A	uc001qzw.1	-	3	377	c.340C>T	c.(340-342)CCT>TCT	p.P114S	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	175	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTTCCTGGAGGAGGTGGGGGA	0.612													66	203					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11546609	11546609	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:11546609G>A	uc010shk.1	-	3	438	c.403C>T	c.(403-405)CCT>TCT	p.P135S		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTTCCTGGAGGAGGTGGAGGA	0.602													125	166					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11546792	11546792	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:11546792G>A	uc010shk.1	-	3	255	c.220C>T	c.(220-222)CCT>TCT	p.P74S		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTTCCTGGAGGAGGTGGGGGA	0.602													6	202					0	0	0.003080	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716487	13716487	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:13716487C>T	uc001rbt.2	-	13	3864	c.3685G>A	c.(3685-3687)GTG>ATG	p.V1229M		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1229	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGACCCGTCACCGTCGTGGAG	0.602													19	22					0	0	0.008871	0	0
PDE6H	5149	broad.mit.edu	37	12	15134401	15134401	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:15134401G>A	uc001rcr.2	+	4	327	c.243G>A	c.(241-243)GGG>GGA	p.G81G		NM_006205	NP_006196	Q13956	CNCG_HUMAN	phosphodiesterase 6H	81					visual perception		3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|enzyme inhibitor activity			ovary(1)|skin(1)	2						CTCAGTTTGGGATTATCTGAA	0.473													25	28					0	0	0.004656	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691095	18691095	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:18691095G>A	uc001rdt.2	+	24	3322	c.3206G>A	c.(3205-3207)CGA>CAA	p.R1069Q	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.R1110Q|PIK3C2G_uc010sic.1_Missense_Mutation_p.R888Q	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1069	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TACAGGGACCGAGCTCCTTTC	0.368													16	55					0	0	0.004007	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691147	18691147	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:18691147G>A	uc001rdt.2	+	24	3374	c.3258G>A	c.(3256-3258)GGG>GGA	p.G1086G	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.G1127G|PIK3C2G_uc010sic.1_Silent_p.G905G	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1086	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CAGAGGGTGGGAAAAACCCAC	0.398													22	57					0	0	0.002299	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18762521	18762521	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:18762521G>A	uc001rdt.2	+	30	4133	c.4017G>A	c.(4015-4017)GAG>GAA	p.E1339E	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.E1380E|PIK3C2G_uc010sic.1_Silent_p.E1158E	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1339	C2.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TATCCTACGAGGATGTGAAGC	0.363													4	9					0	0	0.000602	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18800840	18800840	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:18800840G>A	uc001rdt.2	+	32	4332	c.4216G>A	c.(4216-4218)GGA>AGA	p.G1406R	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.G1447R|PIK3C2G_uc010sic.1_Missense_Mutation_p.G1225R	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1406	C2.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				AGAGCTCCAAGGACATGTCTT	0.338													4	35					0	0	0.000602	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21358809	21358809	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:21358809C>T	uc001req.3	+	11	1443	c.1339C>T	c.(1339-1341)CCA>TCA	p.P447S		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	447	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	CAGAAATAATCCAGTGACATC	0.239													14	47					0	0	0.002450	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21453318	21453318	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:21453318C>T	uc001rer.2	-	7	1125	c.874G>A	c.(874-876)GAA>AAA	p.E292K	SLCO1A2_uc001res.2_Missense_Mutation_p.E292K|SLCO1A2_uc010siq.1_Missense_Mutation_p.E160K|SLCO1A2_uc010sio.1_Missense_Mutation_p.E160K|SLCO1A2_uc010sip.1_Missense_Mutation_p.E160K|SLCO1A2_uc001ret.2_Missense_Mutation_p.E290K|SLCO1A2_uc001reu.2_Missense_Mutation_p.E272K	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	292	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTGACCTCTTCTTTTTGTTTG	0.308													11	23					0	0	0.001368	0	0
ABCC9	10060	broad.mit.edu	37	12	21954019	21954019	+	Missense_Mutation	SNP	C	T	T	rs149722127		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:21954019C>T	uc001rfh.2	-	38	4629	c.4609G>A	c.(4609-4611)GAA>AAA	p.E1537K	ABCC9_uc001rfg.2_Missense_Mutation_p.E66K	NM_020297	NP_064693	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1537	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity	p.E1537K(1)		ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ACTCCATTTTCCTGAGCCAAG	0.383													14	36					0	0	0.003163	0	0
ABCC9	10060	broad.mit.edu	37	12	22059214	22059214	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:22059214G>A	uc001rfi.1	-	10	1484	c.1464C>T	c.(1462-1464)TCC>TCT	p.S488S	ABCC9_uc001rfh.2_Silent_p.S488S|ABCC9_uc001rfj.1_Silent_p.S488S	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	488	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GTCTCTCAGTGGAATAATCCT	0.264													8	21					0	0	0.003080	0	0
CASC1	55259	broad.mit.edu	37	12	25267768	25267768	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:25267768G>A	uc001rgl.2	-	12	1497	c.1415C>T	c.(1414-1416)TCC>TTC	p.S472F	CASC1_uc001rgk.2_Missense_Mutation_p.S478F|CASC1_uc001rgm.3_Missense_Mutation_p.S536F|CASC1_uc001rgj.2_Missense_Mutation_p.S432F|CASC1_uc010sje.1_Missense_Mutation_p.S413F|CASC1_uc010sjf.1_Missense_Mutation_p.S360F|CASC1_uc010sjg.1_3'UTR	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	472										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			TGGTTTGTAGGATACATTGCT	0.363													12	45					0	0	0.004007	0	0
IFLTD1	160492	broad.mit.edu	37	12	25702317	25702317	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:25702317C>T	uc001rgs.2	-	2	340	c.190G>A	c.(190-192)GGA>AGA	p.G64R	IFLTD1_uc001rgt.1_5'UTR|IFLTD1_uc010sji.1_Missense_Mutation_p.G85R|IFLTD1_uc010sjj.1_Intron|IFLTD1_uc009zjc.2_Missense_Mutation_p.G85R	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	64						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					GTCAATTGTCCAGTTGTTGAT	0.388													25	26					0	0	0.003954	0	0
ITPR2	3709	broad.mit.edu	37	12	26784916	26784916	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:26784916G>A	uc001rhg.2	-	22	3234	c.2817C>T	c.(2815-2817)TTC>TTT	p.F939F		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	939	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					CGCTCATGGGGAAGATGGAGC	0.547													37	115					0	0	0.009718	0	0
ARNTL2	56938	broad.mit.edu	37	12	27568836	27568836	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:27568836C>T	uc001rht.1	+	15	1639	c.1621C>T	c.(1621-1623)CCA>TCA	p.P541S	ARNTL2_uc001rhw.2_Missense_Mutation_p.P504S|ARNTL2_uc010sjp.1_Missense_Mutation_p.P504S|ARNTL2_uc001rhu.1_Missense_Mutation_p.P527S|ARNTL2_uc009zji.1_Missense_Mutation_p.P507S|ARNTL2_uc001rhv.1_Missense_Mutation_p.P493S|uc001rhx.2_Intron	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	541					circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					TGATTCGAGTCCAACAGGTTT	0.274													12	49					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	12	31279433	31279433	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:31279433C>T	uc010sjy.1	-	26	3320	c.3320G>A	c.(3319-3321)CGA>CAA	p.R1107Q						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		GAGTGCGTTTCGTAGAGCAGG	0.393													5	25					0	0	0.003080	0	0
PKP2	5318	broad.mit.edu	37	12	32945370	32945370	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:32945370G>A	uc001rlj.3	-	14	2749	c.2634C>T	c.(2632-2634)TCC>TCT	p.S878S	PKP2_uc001rlk.3_Silent_p.S834S|PKP2_uc010skj.1_Silent_p.S831S	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	878					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					AGTCTTTAAGGGAGTGGTAGG	0.423													14	40					0	0	0.004007	0	0
C12orf40	283461	broad.mit.edu	37	12	40115044	40115044	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:40115044G>A	uc001rmc.2	+	13	2117	c.1950G>A	c.(1948-1950)AAG>AAA	p.K650K	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	650										ovary(6)	6						AAATCCATAAGAACAACTAAT	0.333													10	33					0	0	0.008291	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43825296	43825296	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:43825296G>A	uc010skx.1	-	22	3100	c.3100C>T	c.(3100-3102)CTT>TTT	p.L1034F	ADAMTS20_uc001rno.1_Missense_Mutation_p.L188F|ADAMTS20_uc001rnp.1_Missense_Mutation_p.L188F	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1034	TSP type-1 5.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CATGTAACAAGGCACTGTAAG	0.368													32	115					0	0	0.003271	0	0
ARID2	196528	broad.mit.edu	37	12	46230562	46230562	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:46230562C>T	uc001ros.1	+	8	811	c.811C>T	c.(811-813)CAT>TAT	p.H271Y	ARID2_uc001ror.2_Missense_Mutation_p.H271Y|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	271					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GTCTTTATTTCATCCACCTCG	0.348													17	56					0	0	0.006122	0	0
SLC38A1	81539	broad.mit.edu	37	12	46598182	46598182	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:46598182G>A	uc001rpa.2	-	11	982	c.724C>T	c.(724-726)CAA>TAA	p.Q242*	SLC38A1_uc001rpb.2_Nonsense_Mutation_p.Q242*|SLC38A1_uc001rpc.2_Nonsense_Mutation_p.Q242*|SLC38A1_uc001rpd.2_Nonsense_Mutation_p.Q242*|SLC38A1_uc001rpe.2_Nonsense_Mutation_p.Q242*|SLC38A1_uc010slh.1_Nonsense_Mutation_p.Q215*|SLC38A1_uc009zkj.1_Nonsense_Mutation_p.Q242*	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	242	Extracellular (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			CAGGGAATTTGAAATTTCTTG	0.323													41	101					0	0	0.006999	0	0
SLC38A1	81539	broad.mit.edu	37	12	46598345	46598345	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:46598345G>A	uc001rpa.2	-	10	933	c.675C>T	c.(673-675)TCC>TCT	p.S225S	SLC38A1_uc001rpb.2_Silent_p.S225S|SLC38A1_uc001rpc.2_Silent_p.S225S|SLC38A1_uc001rpd.2_Silent_p.S225S|SLC38A1_uc001rpe.2_Silent_p.S225S|SLC38A1_uc010slh.1_Silent_p.S198S|SLC38A1_uc009zkj.1_Silent_p.S225S	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	225	Helical; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TACAGCTCAAGGAAAATCCAC	0.279													55	112					0	0	0.003610	0	0
AMIGO2	347902	broad.mit.edu	37	12	47472375	47472375	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:47472375G>A	uc001rpm.2	-	3	1066	c.411C>T	c.(409-411)TTC>TTT	p.F137F	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Silent_p.F137F|AMIGO2_uc001rpl.2_Silent_p.F137F	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	137	LRR 3.|Extracellular (Potential).				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					TCAACTCTTGGAATACAGCAT	0.438													19	55					0	0	0.007413	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48143184	48143184	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:48143184G>A	uc009zkp.2	-	9	1344	c.904C>T	c.(904-906)CGT>TGT	p.R302C	RAPGEF3_uc010sln.1_5'Flank|RAPGEF3_uc001rpy.2_5'Flank|RAPGEF3_uc009zkq.2_Missense_Mutation_p.R302C|RAPGEF3_uc001rpz.3_Missense_Mutation_p.R344C|RAPGEF3_uc001rqa.2_5'Flank|RAPGEF3_uc009zkr.2_RNA|RAPGEF3_uc009zks.2_Missense_Mutation_p.R356C|RAPGEF3_uc001rqb.3_Missense_Mutation_p.R344C	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	302					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		TTGATGATACGGTTGAAGTCC	0.582													20	52					0	0	0.002299	0	0
FMNL3	91010	broad.mit.edu	37	12	50045807	50045807	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:50045807G>A	uc001ruv.1	-	14	1746	c.1512C>T	c.(1510-1512)GAC>GAT	p.D504D	FMNL3_uc001ruw.1_Silent_p.D453D|FMNL3_uc001rut.1_Silent_p.D70D|FMNL3_uc001ruu.1_Silent_p.D354D	NM_175736	NP_783863	Q8IVF7	FMNL3_HUMAN	formin-like 3 isoform 1	504	Pro-rich.				actin cytoskeleton organization		actin binding|Rho GTPase binding			breast(2)|pancreas(2)	4						GAGCCAGAAGGTCCAGGTCGG	0.662													4	10					0	0	0.009096	0	0
LIMA1	51474	broad.mit.edu	37	12	50589631	50589631	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:50589631G>A	uc001rwj.3	-	8	1186	c.1012C>T	c.(1012-1014)CCT>TCT	p.P338S	LIMA1_uc001rwg.3_Missense_Mutation_p.P36S|LIMA1_uc001rwh.3_Missense_Mutation_p.P178S|LIMA1_uc001rwi.3_Missense_Mutation_p.P178S|LIMA1_uc001rwk.3_Missense_Mutation_p.P338S|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	338					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						TCTTCGGCAGGGGTGGAACGG	0.378													16	51					0	0	0.010504	0	0
LARP4	113251	broad.mit.edu	37	12	50855014	50855014	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:50855014A>G	uc001rwp.1	+	11	1362	c.1218A>G	c.(1216-1218)AGA>AGG	p.R406R	LARP4_uc001rwo.1_Silent_p.R412R|LARP4_uc001rwq.1_Silent_p.R335R|LARP4_uc001rwr.1_Intron|LARP4_uc001rws.1_Silent_p.R405R|LARP4_uc009zlr.1_Silent_p.R225R|LARP4_uc001rwt.1_Intron|LARP4_uc001rwm.2_Silent_p.R406R|LARP4_uc001rwn.2_Silent_p.R336R	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	406							nucleotide binding|RNA binding			ovary(1)	1						ATAGTTCAAGAAACTTTCCAG	0.478													39	68					0	0	0.007835	0	0
ATF1	466	broad.mit.edu	37	12	51208074	51208074	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:51208074G>A	uc001rww.3	+	6	801	c.523G>A	c.(523-525)GAT>AAT	p.D175N	ATF1_uc010smu.1_Missense_Mutation_p.D40N	NM_005171	NP_005162	P18846	ATF1_HUMAN	activating transcription factor 1	175					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway				EWSR1/ATF1(323)|FUS/ATF1(4)	soft_tissue(321)|ovary(2)|NS(2)|bone(2)|skin(2)	329						TGCATCAGGAGATATGCAAAC	0.418			T	EWSR1|FUS	malignant melanoma of soft parts |angiomatoid fibrous histiocytoma 								19	37					0	0	0.002299	0	0
KRT6B	3854	broad.mit.edu	37	12	52841151	52841151	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:52841151G>A	uc001sak.2	-	9	1566	c.1518C>T	c.(1516-1518)GGC>GGT	p.G506G		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	506	Tail.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		CCAGGCCTAAGCCACTGCCGA	0.622													10	30					0	0	0.001368	0	0
KRT73	319101	broad.mit.edu	37	12	53010152	53010152	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:53010152C>T	uc001sas.2	-	2	495	c.460G>A	c.(460-462)GAG>AAG	p.E154K		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	154	Coil 1A.|Rod.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TTCTGCTGCTCCAGGAACCGC	0.522													23	46					0	0	0.003330	0	0
KRT4	3851	broad.mit.edu	37	12	53207961	53207961	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:53207961G>A	uc001saz.2	-	1	375	c.104C>T	c.(103-105)GCC>GTC	p.A35V		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	Error:Variant_position_missing_in_B4DRS2_after_alignment						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GGTTGCAGGGGCATAAAGGGA	0.557													12	24					0	0	0.000978	0	0
NFE2	4778	broad.mit.edu	37	12	54686780	54686780	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:54686780C>T	uc009znk.2	-	2	1010	c.500G>A	c.(499-501)CGG>CAG	p.R167Q	NFE2_uc001sfq.2_Missense_Mutation_p.R167Q|NFE2_uc001sfr.3_Missense_Mutation_p.R167Q|NFE2_uc009znl.2_Missense_Mutation_p.R167Q	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	167	Transactivation domain.				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						GCTGCGCCGCCGACCAGCCTC	0.557													33	97					0	0	0.003271	0	0
GTSF1	121355	broad.mit.edu	37	12	54865020	54865020	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:54865020A>G	uc001sgb.2	-	2	99	c.13T>C	c.(13-15)TAC>CAC	p.Y5H		NM_144594	NP_653195	Q8WW33	GTSF1_HUMAN	gametocyte specific factor 1	5							metal ion binding				0		Myeloproliferative disorder(1001;0.00452)				TACATACTGTAAGTTTCTTCC	0.338													10	25					0	0	0.008291	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54905611	54905611	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:54905611G>A	uc001sgc.3	+	8	839	c.760G>A	c.(760-762)GAA>AAA	p.E254K	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.E204K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	254					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TCTGTCTGTGGAAGTAATGGA	0.403													29	60					0	0	0.003755	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54922077	54922077	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:54922077C>T	uc001sgc.3	+	22	2501	c.2422C>T	c.(2422-2424)CTC>TTC	p.L808F	NCKAP1L_uc010sox.1_Missense_Mutation_p.L350F|NCKAP1L_uc010soy.1_Missense_Mutation_p.L758F	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	808					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GACCATCATCCTCTCCCCAGC	0.547													51	133					0	0	0.003610	0	0
PDE1B	5153	broad.mit.edu	37	12	54967154	54967154	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:54967154C>T	uc001sgd.1	+	9	1018	c.852C>T	c.(850-852)ATC>ATT	p.I284I	PDE1B_uc010soz.1_Silent_p.I147I|PDE1B_uc010spa.1_Silent_p.I243I|PDE1B_uc001sgf.2_Silent_p.I147I|PDE1B_uc001sge.2_Silent_p.I264I|PDE1B_uc009znq.2_Silent_p.I80I	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	284	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AATGTGCCATCGTGTACAATG	0.522													27	75					0	0	0.008361	0	0
OR10A7	121364	broad.mit.edu	37	12	55615172	55615172	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:55615172C>T	uc010spf.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						GGCTTATGATCGCTTTGTGGC	0.448													41	70					0	0	0.006230	0	0
OR10A7	121364	broad.mit.edu	37	12	55615199	55615199	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:55615199C>T	uc010spf.1	+	1	391	c.391C>T	c.(391-393)CAT>TAT	p.H131Y		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TAACCCTCTCCATTATTCAGT	0.458													35	68					0	0	0.003755	0	0
OR6C74	254783	broad.mit.edu	37	12	55641320	55641320	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:55641320G>A	uc010spg.1	+	1	249	c.249G>A	c.(247-249)ATG>ATA	p.M83I		NM_001005490	NP_001005490	A6NCV1	O6C74_HUMAN	olfactory receptor, family 6, subfamily C,	83	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TTGTTAGTATGGCAACAGGTG	0.388													62	163					0	0	0.003610	0	0
OR6C1	390321	broad.mit.edu	37	12	55714790	55714790	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:55714790G>A	uc010spi.1	+	1	407	c.407G>A	c.(406-408)CGA>CAA	p.R136Q		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						ATCATGAATCGAAGAGTCTGC	0.433													9	18					0	0	0.006214	0	0
METTL7B	196410	broad.mit.edu	37	12	56077639	56077639	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:56077639G>A	uc010spr.1	+	2	750	c.541G>A	c.(541-543)GGA>AGA	p.G181R		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	181							methyltransferase activity				0						AGAACCATATGGAAGCTGGGC	0.542													25	94					0	0	0.003954	0	0
ITGA7	3679	broad.mit.edu	37	12	56096685	56096685	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:56096685G>A	uc001shh.2	-	3	605	c.385C>T	c.(385-387)CGG>TGG	p.R129W	ITGA7_uc001shg.2_Missense_Mutation_p.R129W|ITGA7_uc010sps.1_Intron|ITGA7_uc009znx.2_Missense_Mutation_p.R16W	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	129	FG-GAP 2.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CCCTGGCTCCGAACACTGACT	0.448													18	58					0	0	0.007413	0	0
SMARCC2	6601	broad.mit.edu	37	12	56559111	56559111	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:56559111C>T	uc001skb.2	-	26	3236	c.3130G>A	c.(3130-3132)GGA>AGA	p.G1044R	SMARCC2_uc001skd.2_Missense_Mutation_p.G1075R|SMARCC2_uc001ska.2_Missense_Mutation_p.G1075R|SMARCC2_uc001skc.2_Missense_Mutation_p.G1074R|SMARCC2_uc010sqf.1_Missense_Mutation_p.G964R	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1044	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			CCATGGGGTCCAGGGGGGGGA	0.577													40	70					0	0	0.003610	0	0
STAT2	6773	broad.mit.edu	37	12	56749512	56749512	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:56749512G>A	uc001slc.2	-	4	439	c.361C>T	c.(361-363)CAG>TAG	p.Q121*	STAT2_uc001sld.2_Nonsense_Mutation_p.Q117*|STAT2_uc010sqn.1_Nonsense_Mutation_p.Q117*	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	121					interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						CTCTGAGCCTGGATCAAAATT	0.448													37	119					0	0	0.006230	0	0
RBMS2	5939	broad.mit.edu	37	12	56965498	56965498	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:56965498C>T	uc001sln.2	+	5	600	c.401C>T	c.(400-402)CCC>CTC	p.P134L	RBMS2_uc010sqp.1_Intron|RBMS2_uc010sqq.1_Missense_Mutation_p.P9L|RBMS2_uc009zou.2_5'UTR	NM_002898	NP_002889	Q15434	RBMS2_HUMAN	RNA binding motif, single stranded interacting	134					RNA processing	nucleus	nucleotide binding|RNA binding				0						GAACAGGACCCCACAAATTTA	0.493													19	57					0	0	0.002780	0	0
PRIM1	5557	broad.mit.edu	37	12	57132269	57132269	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:57132269C>T	uc001smd.2	-	11	1157	c.1093G>A	c.(1093-1095)GAG>AAG	p.E365K		NM_000946	NP_000937	P49642	PRI1_HUMAN	DNA primase polypeptide 1	365					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	DNA primase activity|metal ion binding				0						TCTTTTTCCTCTTCATTAGTG	0.299													4	6					0	0	0.000602	0	0
GLI1	2735	broad.mit.edu	37	12	57860059	57860059	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:57860059G>A	uc001snx.2	+	8	877	c.799G>A	c.(799-801)GAG>AAG	p.E267K	GLI1_uc009zpq.2_Missense_Mutation_p.E139K	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	267					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			GGAGCGGAAGGAGTTCGTGTG	0.597													62	145					0	0	0.003610	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57872369	57872369	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:57872369C>T	uc001sod.2	-	6	894	c.701G>A	c.(700-702)AGA>AAA	p.R234K	ARHGAP9_uc001snz.2_5'Flank|ARHGAP9_uc001soa.2_5'Flank|ARHGAP9_uc001sob.2_Missense_Mutation_p.R163K|ARHGAP9_uc001soc.2_Missense_Mutation_p.R163K|ARHGAP9_uc001soe.1_Missense_Mutation_p.R242K|ARHGAP9_uc010sro.1_Missense_Mutation_p.R163K	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	163					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			GGAGAGGGATCTTCCGCTTGG	0.453													38	79					0	0	0.006230	0	0
MON2	23041	broad.mit.edu	37	12	62892735	62892735	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:62892735G>A	uc001sre.2	+	5	863	c.472G>A	c.(472-474)GAT>AAT	p.D158N	MON2_uc009zqj.2_Missense_Mutation_p.D158N|MON2_uc010ssl.1_Missense_Mutation_p.D86N|MON2_uc010ssm.1_Missense_Mutation_p.D158N|MON2_uc010ssn.1_Missense_Mutation_p.D158N|MON2_uc001srf.2_5'Flank|MON2_uc001srd.1_Missense_Mutation_p.D50N	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	158					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		CTTCACAAAAGATAATATTAC	0.343													24	55					0	0	0.002299	0	0
PPM1H	57460	broad.mit.edu	37	12	63226043	63226043	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:63226043T>A	uc001srk.3	-	2	411	c.262A>T	c.(262-264)AAG>TAG	p.K88*		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	88							phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		TGTGTGCTCTTCCCGGCATTG	0.542													5	22					0	0	0.001168	0	0
SRGAP1	57522	broad.mit.edu	37	12	64488754	64488754	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:64488754C>T	uc010ssp.1	+	13	1638	c.1582C>T	c.(1582-1584)CGG>TGG	p.R528W	SRGAP1_uc001srv.2_Missense_Mutation_p.R465W	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	528	Rho-GAP.				axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		AAGCTGTATTCGGTTCATCAA	0.383													42	80					0	0	0.002852	0	0
DYRK2	8445	broad.mit.edu	37	12	68051584	68051584	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:68051584G>A	uc001str.3	+	3	1299	c.897G>A	c.(895-897)ATG>ATA	p.M299I	DYRK2_uc001sts.3_Missense_Mutation_p.M226I	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	299	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		ACATCTGCATGACGTTTGAGC	0.473													18	923					0	0	0.004007	0	0
MDM1	56890	broad.mit.edu	37	12	68696423	68696423	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:68696423C>G	uc001stz.2	-	12	2085	c.1949G>C	c.(1948-1950)AGA>ACA	p.R650T	MDM1_uc010stc.1_Missense_Mutation_p.R615T|MDM1_uc009zqv.1_Missense_Mutation_p.R370T	NM_017440	NP_059136	Q8TC05	MDM1_HUMAN	mouse Mdm1 nuclear protein homolog isoform 1	650						nucleus				ovary(3)|skin(2)	5			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000174)		CTCTGGATCTCTAAGAGAGCC	0.383													16	615					0	0	0.006122	0	0
GLIPR1L2	144321	broad.mit.edu	37	12	75804358	75804358	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:75804358G>A	uc001sxr.1	+	2	387	c.379G>A	c.(379-381)GAA>AAA	p.E127K	GLIPR1L2_uc001sxp.1_Missense_Mutation_p.E127K|GLIPR1L2_uc001sxq.1_Missense_Mutation_p.E20K	NM_152436	NP_689649	Q4G1C9	GRPL2_HUMAN	GLI pathogenesis-related 1 like 2	127						integral to membrane				ovary(1)	1						CCCTGAAAATGAATTTACTGC	0.328													22	18					0	0	0.006320	0	0
CSRP2	1466	broad.mit.edu	37	12	77254062	77254062	+	Splice_Site	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:77254062A>T	uc001syl.1	-	4	494	c.411_splice	c.e4+1	p.K137_splice		NM_001321	NP_001312	Q16527	CSRP2_HUMAN	cysteine and glycine-rich protein 2						multicellular organismal development	nucleus	zinc ion binding			ovary(1)	1						ATAGCACTTTACCTTTCCAGC	0.418													18	22					0	0	0.006122	0	0
PPFIA2	8499	broad.mit.edu	37	12	81657127	81657127	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:81657127G>A	uc001szo.1	-	31	3759	c.3598C>T	c.(3598-3600)CAG>TAG	p.Q1200*	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	1099										ovary(3)|lung(2)|pancreas(1)	6						GGAGGAAACTGCCTTCTCCAG	0.448													11	19					0	0	0.001368	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85466851	85466851	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:85466851C>T	uc001tac.2	+	11	2973	c.2862C>T	c.(2860-2862)TTC>TTT	p.F954F	LRRIQ1_uc001tab.1_Silent_p.F954F	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	954										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		ATTGTAATTTCCTTATCTCCC	0.249													16	28					0	0	0.003163	0	0
CEP290	80184	broad.mit.edu	37	12	88472896	88472896	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:88472896G>A	uc001tar.2	-	39	5681	c.5337C>T	c.(5335-5337)ATC>ATT	p.I1779I	CEP290_uc001taq.2_Silent_p.I839I	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1779	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						GTCGATCAACGATTTGTTGAA	0.378													12	11					0	0	0.001855	0	0
GALNT4	8693	broad.mit.edu	37	12	89917186	89917186	+	Silent	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:89917186G>T	uc001tbd.2	-	1	1350	c.1141C>A	c.(1141-1143)CGG>AGG	p.R381R	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Silent_p.R378R|GALNT4_uc010suo.1_Silent_p.R73R	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	381	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						TCTGCTGCCCGAGCAGTATTC	0.473													24	31					5.35356e-11	5.95698e-11	0.002780	1	0
UBE2N	7334	broad.mit.edu	37	12	93804628	93804628	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:93804628C>T	uc001tcp.2	-	3	666	c.300G>A	c.(298-300)CAG>CAA	p.Q100Q		NM_003348	NP_003339	P61088	UBE2N_HUMAN	ubiquitin-conjugating enzyme E2N	100					DNA double-strand break processing|double-strand break repair via homologous recombination|histone ubiquitination|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of DNA repair|positive regulation of histone modification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity|postreplication repair|protein K63-linked ubiquitination|proteolysis|regulation of histone ubiquitination|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-MMS2 complex|UBC13-UEV1A complex|ubiquitin ligase complex	ATP binding|ubiquitin binding|ubiquitin-protein ligase activity				0						CTGTGCGGATCTGCAGTGCTG	0.498								Direct_reversal_of_damage|Rad6_pathway					22	47					0	0	0.002299	0	0
HAL	3034	broad.mit.edu	37	12	96370431	96370431	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:96370431G>A	uc001tem.1	-	19	2005	c.1708C>T	c.(1708-1710)CTG>TTG	p.L570L	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Silent_p.L362L|HAL_uc010sux.1_Silent_p.L570L	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	570					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	GTTGTTTTCAGGGGACGTAGA	0.478													101	40					0	0	0.003610	0	0
CDK17	5128	broad.mit.edu	37	12	96728504	96728504	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:96728504C>T	uc001tep.1	-	2	600	c.111G>A	c.(109-111)AAG>AAA	p.K37K	CDK17_uc009ztk.2_Silent_p.K37K|CDK17_uc010svb.1_Intron	NM_002595	NP_002586	Q00537	CDK17_HUMAN	PCTAIRE protein kinase 2	37							ATP binding|cyclin-dependent protein kinase activity			ovary(3)|lung(2)|kidney(1)|central_nervous_system(1)	7						TACCATTATCCTTGCTGCTGT	0.343													37	40					0	0	0.007835	0	0
ANKS1B	56899	broad.mit.edu	37	12	99898353	99898353	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:99898353G>A	uc001tge.1	-	10	1756	c.1339C>T	c.(1339-1341)CCT>TCT	p.P447S	ANKS1B_uc001tgf.1_Missense_Mutation_p.P27S|ANKS1B_uc009ztt.1_Missense_Mutation_p.P413S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	447						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TTTTCTGAAGGAAATGTATCC	0.388													10	14					0	0	0.006214	0	0
SLC17A8	246213	broad.mit.edu	37	12	100774643	100774643	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:100774643C>T	uc010svi.1	+	2	579	c.266C>T	c.(265-267)TCC>TTC	p.S89F	SLC17A8_uc009ztx.2_Missense_Mutation_p.S89F	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	89	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TTCTGCATTTCCTTTGGGATC	0.517													61	60					0	0	0.003610	0	0
UTP20	27340	broad.mit.edu	37	12	101715375	101715375	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:101715375C>T	uc001tia.1	+	25	3165	c.3009C>T	c.(3007-3009)GCC>GCT	p.A1003A		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1003					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TGAAAACAGCCCACCGAGCAG	0.333													13	37					0	0	0.002450	0	0
PAH	5053	broad.mit.edu	37	12	103234185	103234185	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:103234185G>A	uc001tjq.1	-	13	1780	c.1308C>T	c.(1306-1308)TCC>TCT	p.S436S		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	436					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	TACTGTTAATGGAATCAGCCA	0.433													17	25					0	0	0.006122	0	0
PRDM4	11108	broad.mit.edu	37	12	108145331	108145331	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:108145331G>A	uc001tmp.2	-	5	1424	c.987C>T	c.(985-987)GTC>GTT	p.V329V	PRDM4_uc001tmq.2_Intron	NM_012406	NP_036538	Q9UKN5	PRDM4_HUMAN	PR domain containing 4	329					cell proliferation|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						TGATGGAGGAGACAGCCACAG	0.498													34	26					0	0	0.004878	0	0
USP30	84749	broad.mit.edu	37	12	109494518	109494518	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:109494518G>A	uc010sxi.1	+	2	219	c.115G>A	c.(115-117)GGT>AGT	p.G39S	USP30_uc001tnu.3_Missense_Mutation_p.G8S	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	39	Helical; (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						GGGAGTTATAGGTGGAATTGC	0.373													69	94					0	0	0.003610	0	0
FOXN4	121643	broad.mit.edu	37	12	109719441	109719441	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:109719441G>A	uc001toe.3	-	9	1170	c.1065C>T	c.(1063-1065)TCC>TCT	p.S355S	FOXN4_uc009zvg.2_Silent_p.S152S|FOXN4_uc001tof.3_Silent_p.S175S	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	355					axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						CTGACTGCAGGGACAGGGTCA	0.687													4	10					0	0	0.009096	0	0
ATP2A2	488	broad.mit.edu	37	12	110781220	110781220	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:110781220C>T	uc001tqk.3	+	16	3065	c.2502C>T	c.(2500-2502)TTC>TTT	p.F834F	ATP2A2_uc001tql.3_Silent_p.F834F|ATP2A2_uc010sxy.1_Silent_p.F807F|ATP2A2_uc001tqn.3_5'Flank|ATP2A2_uc009zvn.2_5'Flank	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	834	Helical; Name=7; (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						GGCTCTTTTTCCGTTACTTGG	0.413													30	35					0	0	0.009535	0	0
ATP2A2	488	broad.mit.edu	37	12	110784064	110784064	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:110784064C>T	uc001tqk.3	+	20	3481	c.2918C>T	c.(2917-2919)TCC>TTC	p.S973F	ATP2A2_uc001tql.3_Missense_Mutation_p.S973F|ATP2A2_uc010sxy.1_Missense_Mutation_p.S946F|ATP2A2_uc001tqn.3_Missense_Mutation_p.S50F|ATP2A2_uc009zvn.2_RNA	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	973	Helical; Name=10; (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						CTGAAAATCTCCTTGCCCGTG	0.562													22	32					0	0	0.003954	0	0
CUX2	23316	broad.mit.edu	37	12	111785472	111785472	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:111785472G>A	uc001tsa.1	+	22	3957	c.3804G>A	c.(3802-3804)CAG>CAA	p.Q1268Q		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1268						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CTGAGGACCAGAAGCCAACCG	0.622													18	22					0	0	0.004990	0	0
MED13L	23389	broad.mit.edu	37	12	116429468	116429468	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:116429468G>A	uc001tvw.2	-	17	3346	c.3291C>T	c.(3289-3291)CCC>CCT	p.P1097P		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1097					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		GCATGGTGGCGGGCTCCACAG	0.522													14	19					0	0	0.001855	0	0
MAP1LC3B2	643246	broad.mit.edu	37	12	117013751	117013751	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:117013751C>T	uc009zwk.1	+	2	158	c.4C>T	c.(4-6)CCG>TCG	p.P2S		NM_001085481	NP_001078950	A6NCE7	MP3B2_HUMAN	microtubule-associated protein 1 light chain 3	2					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|endomembrane system|microtubule					0						CCACACCATGCCGTCGGAGAA	0.617													20	27					0	0	0.008871	0	0
NOS1	4842	broad.mit.edu	37	12	117703283	117703283	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:117703283G>A	uc001twm.1	-	12	2660	c.1974C>T	c.(1972-1974)TCC>TCT	p.S658S		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	658					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ACTCGGTGGCGGAGTGATGGT	0.602													7	4					0	0	0.001984	0	0
NOS1	4842	broad.mit.edu	37	12	117768658	117768659	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:117768658_117768659CC>TT	uc001twm.1	-	2	902_903	c.216_217GG>AA	c.(214-219)TTGGTG>TTAATG	p.V73M		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	73	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTCAGGTCCACCAAGGGCCGGC	0.619													20	12					0	0	0.004672	0	0
PEBP1	5037	broad.mit.edu	37	12	118582456	118582456	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:118582456C>T	uc001twu.1	+	4	557	c.412C>T	c.(412-414)CTC>TTC	p.L138F	PEBP1_uc010szc.1_Intron	NM_002567	NP_002558	P30086	PEBP1_HUMAN	prostatic binding protein	138							ATP binding|phosphatidylethanolamine binding|serine-type endopeptidase inhibitor activity			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGAGCCCATCCTCAGCAACCG	0.587								Direct_reversal_of_damage					9	15					0	0	0.004482	0	0
SRRM4	84530	broad.mit.edu	37	12	119552115	119552115	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:119552115C>T	uc001txa.1	+	3	603	c.311C>T	c.(310-312)CCT>CTT	p.P104L		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	104					cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						ACACCACCACCTTCCTCCAGG	0.473													6	15					0	0	0.001168	0	0
GCN1L1	10985	broad.mit.edu	37	12	120580452	120580453	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:120580452_120580453GG>AA	uc001txo.2	-	44	5700_5701	c.5687_5688CC>TT	c.(5686-5688)ACC>ATT	p.T1896I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1896					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCACCAGCTGGGTGTCTGAGCG	0.624													19	47					0	0	0.004672	0	0
GCN1L1	10985	broad.mit.edu	37	12	120585060	120585060	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:120585060G>A	uc001txo.2	-	38	4756	c.4743C>T	c.(4741-4743)CTC>CTT	p.L1581L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1581	HEAT 10.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGGCATCCAGGAGGACTGGAG	0.557													35	28					0	0	0.003271	0	0
MSI1	4440	broad.mit.edu	37	12	120784047	120784047	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:120784047G>A	uc001tye.1	-	13	1002	c.938C>T	c.(937-939)CCC>CTC	p.P313L		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	313					nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CATGGGGCCGGGGCTGGTGGT	0.701													3	10					0	0	0.004672	0	0
COQ5	84274	broad.mit.edu	37	12	120966880	120966880	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:120966880C>T	uc001tyn.2	-	1	85	c.65G>A	c.(64-66)CGG>CAG	p.R22Q	COQ5_uc001tyo.2_5'UTR|COQ5_uc010szj.1_Missense_Mutation_p.R22Q	NM_032314	NP_115690	Q5HYK3	COQ5_HUMAN	coenzyme Q5 homolog, methyltransferase	22					ubiquinone biosynthetic process	mitochondrion	methyltransferase activity			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGGCAGCCCCGCATCGCCCG	0.652													10	29					0	0	0.006214	0	0
MPHOSPH9	10198	broad.mit.edu	37	12	123705965	123705965	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:123705965G>T	uc001uel.2	-	1	477	c.370C>A	c.(370-372)CTT>ATT	p.L124I	MPHOSPH9_uc010tal.1_5'UTR|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_5'UTR	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	124					M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		TTTTCACCAAGAAAATTATGT	0.308													8	35					0.00307968	0.00340355	0.003080	1	0
DNAH10	196385	broad.mit.edu	37	12	124270434	124270434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:124270434G>A	uc001uft.3	+	9	1214	c.1189G>A	c.(1189-1191)GAA>AAA	p.E397K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	397	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CATCGCCTGGGAAATCGCTGA	0.498													17	54					0	0	0.006122	0	0
DNAH10	196385	broad.mit.edu	37	12	124305258	124305258	+	Missense_Mutation	SNP	G	A	A	rs142727450	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:124305258G>A	uc001uft.3	+	23	3803	c.3778G>A	c.(3778-3780)GAA>AAA	p.E1260K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1260	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AGTGCAGAAGGAAATGAGTGG	0.483													32	83					0	0	0.006230	0	0
DNAH10	196385	broad.mit.edu	37	12	124315133	124315133	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:124315133G>A	uc001uft.3	+	25	4103	c.4078G>A	c.(4078-4080)GAA>AAA	p.E1360K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1360	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGTCTTTTTTGAAATGACCGA	0.373													26	61					0	0	0.007291	0	0
UBC	7316	broad.mit.edu	37	12	125397113	125397113	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:125397113G>A	uc001ugs.3	-	2	1653	c.1205C>T	c.(1204-1206)ACC>ATC	p.T402I	UBC_uc001ugr.2_Intron|UBC_uc001ugu.1_Intron|UBC_uc001ugt.2_Intron|UBC_uc001ugv.2_Intron	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	402	Ubiquitin-like 6.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		ATTCTCAATGGTGTCACTCGG	0.542													78	166					0	0	0.003610	0	0
AACS	65985	broad.mit.edu	37	12	125570980	125570980	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:125570980C>T	uc001uhc.2	+	4	669	c.463C>T	c.(463-465)CGG>TGG	p.R155W	AACS_uc009zyg.2_RNA|AACS_uc001uhd.2_Missense_Mutation_p.R155W|AACS_uc009zyh.2_RNA	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	155					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		GAAAGGAGATCGGGTTGTTGG	0.468													23	30					0	0	0.002299	0	0
DDX51	317781	broad.mit.edu	37	12	132626863	132626863	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:132626863C>T	uc001ujy.3	-	4	814	c.775G>A	c.(775-777)GGC>AGC	p.G259S	NOC4L_uc001ujz.1_5'Flank	NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	259	Helicase ATP-binding.|ATP (By similarity).				rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		TTCCCACTGCCTGTTGGGGCA	0.612													14	48					0	0	0.001855	0	0
CHFR	55743	broad.mit.edu	37	12	133438075	133438076	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr12:133438075_133438076GG>AA	uc001ulf.2	-	7	848_849	c.764_765CC>TT	c.(763-765)CCC>CTT	p.P255L	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Missense_Mutation_p.P243L|CHFR_uc010tbs.1_Missense_Mutation_p.P255L|CHFR_uc001uld.2_Missense_Mutation_p.P214L|CHFR_uc010tbt.1_Missense_Mutation_p.P163L	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	255					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		TCTTCTTCACGGGCTCCAAATC	0.569													20	58					0	0	0.004672	0	0
LOC284232	284232	broad.mit.edu	37	13	19412626	19412626	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:19412626C>T	uc010tcj.1	-	1		c.33484G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GATTCAATTTCAGCTTCCAGT	0.363													8	39					0	0	0.008291	0	0
LOC284232	284232	broad.mit.edu	37	13	19444889	19444889	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:19444889G>A	uc010tcj.1	-	1		c.1221C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TGTTTAAGAAGGATGTTGACA	0.358													6	26					0	0	0.001168	0	0
SACS	26278	broad.mit.edu	37	13	23907707	23907707	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:23907707G>A	uc001uon.2	-	10	10897	c.10308C>T	c.(10306-10308)ATC>ATT	p.I3436I	SACS_uc001uoo.2_Silent_p.I3289I|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3436					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CAGCTGAAGGGATACTTTTTG	0.358													38	61					0	0	0.005524	0	0
SACS	26278	broad.mit.edu	37	13	23928867	23928867	+	Silent	SNP	G	A	A	rs144468379	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:23928867G>A	uc001uon.2	-	8	2473	c.1884C>T	c.(1882-1884)CCC>CCT	p.P628P	SACS_uc001uoo.2_Silent_p.P481P|SACS_uc001uop.1_Silent_p.P415P|SACS_uc001uoq.1_Silent_p.P481P	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	628					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GCACCCACGCGGGCGTCACCT	0.562													8	45					0	0	0.003080	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24466191	24466191	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:24466191C>T	uc010tcw.1	-	3	239	c.239G>A	c.(238-240)GGA>GAA	p.G80E	MIPEP_uc001uox.3_5'Flank|PCOTH_uc001uoy.2_3'UTR|PCOTH_uc009zzx.2_3'UTR|C1QTNF9B_uc010tcv.1_Missense_Mutation_p.E88K|C1QTNF9B_uc001uoz.1_Missense_Mutation_p.G80E|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.G80E	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	80	Collagen-like 1.					collagen					0						TTCAACTTTTCCATCTGCTCC	0.433													26	60					0	0	0.004289	0	0
PARP4	143	broad.mit.edu	37	13	25016098	25016098	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:25016098A>C	uc001upl.2	-	30	3658	c.3552T>G	c.(3550-3552)AAT>AAG	p.N1184K		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1184					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		AAGGCGACTCATTCTCATCCT	0.403													9	12					0	0	0.000978	0	0
FAM123A	219287	broad.mit.edu	37	13	25744419	25744419	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:25744419C>T	uc001uqb.2	-	1	1439	c.1339G>A	c.(1339-1341)GAG>AAG	p.E447K	FAM123A_uc001uqa.2_Missense_Mutation_p.E328K|FAM123A_uc001uqc.2_Missense_Mutation_p.E328K	NM_152704	NP_689917	Q8N7J2	F123A_HUMAN	hypothetical protein LOC219287 isoform 1	447										ovary(2)|large_intestine(1)|lung(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		CCCTGCTCCTCGGTCTGGGAG	0.657													10	14					0	0	0.006214	0	0
PDX1	3651	broad.mit.edu	37	13	28498687	28498687	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:28498687A>C	uc001urt.2	+	2	809	c.701A>C	c.(700-702)GAG>GCG	p.E234A		NM_000209	NP_000200	P52945	PDX1_HUMAN	pancreatic and duodenal homeobox 1	234					detection of glucose|generation of precursor metabolites and energy|insulin secretion|nitric oxide mediated signal transduction|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|type B pancreatic cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity				0	all_cancers(110;0.175)|all_hematologic(3;0.0447)|Acute lymphoblastic leukemia(6;0.155)	Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0402)|all cancers(112;0.0404)|OV - Ovarian serous cystadenocarcinoma(117;0.197)		TCCGGCGAGGAGCTTCTGGCG	0.657													17	58					0	0	0.006122	0	0
FLT1	2321	broad.mit.edu	37	13	29041073	29041073	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:29041073C>T	uc001usb.3	-	3	640	c.355G>A	c.(355-357)GAA>AAA	p.E119K	FLT1_uc010aar.1_Missense_Mutation_p.E119K|FLT1_uc001usc.3_Missense_Mutation_p.E119K|FLT1_uc010tdp.1_Missense_Mutation_p.E119K|FLT1_uc001usd.2_Missense_Mutation_p.E119K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	119	Ig-like C2-type 1.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GATTCTGTTTCCTTCTTCTTT	0.363													14	46					0	0	0.001855	0	0
SLC7A1	6541	broad.mit.edu	37	13	30090380	30090380	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:30090380G>A	uc001uso.2	-	12	2068	c.1681C>T	c.(1681-1683)CCC>TCC	p.P561S		NM_003045	NP_003036	P30825	CTR1_HUMAN	solute carrier family 7 (cationic amino acid	561	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity				0		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GGCAGGAAGGGAACCTGAAGA	0.537													4	26					0	0	0.009096	0	0
BRCA2	675	broad.mit.edu	37	13	32929059	32929059	+	Silent	SNP	C	T	T	rs80359636		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:32929059C>T	uc001uub.1	+	14	7296	c.7069C>T	c.(7069-7071)CTG>TTG	p.L2357L		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2357	Interaction with FANCD2.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		TCAAGAATTTCTGTCTAAATC	0.343			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			19	22					0	0	0.008871	0	0
BRCA2	675	broad.mit.edu	37	13	32937450	32937450	+	Missense_Mutation	SNP	C	T	T	rs80359054		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:32937450C>T	uc001uub.1	+	18	8338	c.8111C>T	c.(8110-8112)TCT>TTT	p.S2704F		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2704					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		TCTGAAACTTCTAGCAATAAA	0.383			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			10	49					0	0	0.008291	0	0
KL	9365	broad.mit.edu	37	13	33635593	33635593	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:33635593G>A	uc001uus.2	+	4	2385	c.2377G>A	c.(2377-2379)GAA>AAA	p.E793K	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	793	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CACTGAAGATGAAAAAAAGCT	0.398													18	33					0	0	0.004990	0	0
NBEA	26960	broad.mit.edu	37	13	35615209	35615209	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:35615209G>A	uc001uvb.2	+	3	640	c.434G>A	c.(433-435)CGA>CAA	p.R145Q		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	145						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCCATTCTACGAAAAAGTGTT	0.408													30	56					0	0	0.007291	0	0
NBEA	26960	broad.mit.edu	37	13	35733271	35733271	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:35733271C>T	uc001uvb.2	+	23	3169	c.2963C>T	c.(2962-2964)TCA>TTA	p.S988L	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	988						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCTGGTCTTTCATCACAGACA	0.423													27	33					0	0	0.002836	0	0
DCLK1	9201	broad.mit.edu	37	13	36379916	36379916	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:36379916C>T	uc001uvf.2	-	15	2097	c.1864G>A	c.(1864-1866)GAG>AAG	p.E622K	DCLK1_uc001uve.3_Missense_Mutation_p.E315K|DCLK1_uc010teh.1_Missense_Mutation_p.E315K|DCLK1_uc010abk.2_Missense_Mutation_p.E142K	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	622	Protein kinase.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		GTAATGAGCTCCTGTGAAGGG	0.408													32	60					0	0	0.002445	0	0
DCLK1	9201	broad.mit.edu	37	13	36700119	36700119	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:36700119G>A	uc001uvf.2	-	2	389	c.156C>T	c.(154-156)TCC>TCT	p.S52S		NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	52					cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		CCTTCTTCTCGGAGCTGAGCG	0.582													12	50					0	0	0.001368	0	0
TRPC4	7223	broad.mit.edu	37	13	38320118	38320118	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:38320118C>T	uc001uws.2	-	3	1088	c.853G>A	c.(853-855)GAT>AAT	p.D285N	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.D285N|TRPC4_uc010tey.1_Missense_Mutation_p.D285N|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Missense_Mutation_p.D285N|TRPC4_uc010aby.2_Missense_Mutation_p.D285N	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	285	Cytoplasmic (Potential).|Multimerization domain (By similarity).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CTTGCAAGATCATTTCCACTT	0.393													34	139					0	0	0.003271	0	0
FREM2	341640	broad.mit.edu	37	13	39454855	39454855	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:39454855G>A	uc001uwv.2	+	24	9750	c.9441G>A	c.(9439-9441)CCG>CCA	p.P3147P		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	3147	Cytoplasmic (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		AGGATGCCCCGAAAGGCTCCA	0.547													15	18					0	0	0.003163	0	0
KIAA0564	23078	broad.mit.edu	37	13	42393413	42393413	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:42393413A>T	uc001uyj.2	-	15	1880	c.1810T>A	c.(1810-1812)TTT>ATT	p.F604I	KIAA0564_uc001uyk.2_Missense_Mutation_p.F604I	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	604						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TAATGGAAAAAGAACATGGTT	0.403													11	35					0	0	0.000978	0	0
KIAA0564	23078	broad.mit.edu	37	13	42404772	42404772	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:42404772G>A	uc001uyj.2	-	14	1663	c.1593C>T	c.(1591-1593)ATC>ATT	p.I531I	KIAA0564_uc001uyk.2_Silent_p.I531I	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	531						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		CTCGATCATGGATTAACCTAA	0.398													23	50					0	0	0.002780	0	0
AKAP11	11215	broad.mit.edu	37	13	42875185	42875185	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:42875185A>C	uc001uys.1	+	8	2478	c.2303A>C	c.(2302-2304)CAG>CCG	p.Q768P		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	768					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		ACAGTGCAGCAGGCCTTGTTT	0.448													29	48					0	0	0.008361	0	0
NUFIP1	26747	broad.mit.edu	37	13	45563540	45563540	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:45563540G>A	uc001uzp.2	-	1	74	c.32C>T	c.(31-33)CCT>CTT	p.P11L	KIAA1704_uc010tfo.1_5'Flank|KIAA1704_uc001uzq.2_5'Flank|KIAA1704_uc001uzr.1_5'Flank|KIAA1704_uc001uzs.2_5'Flank	NM_012345	NP_036477	Q9UHK0	NUFP1_HUMAN	nuclear fragile X mental retardation protein	11					box C/D snoRNP assembly|positive regulation of transcription from RNA polymerase II promoter|RNA processing	actin cytoskeleton|cytosolic ribosome|nuclear matrix|nucleolus|perichromatin fibrils|pre-snoRNP complex|presynaptic active zone|transcription elongation factor complex	DNA binding|identical protein binding|protein binding, bridging|RNA binding|zinc ion binding				0		Lung NSC(96;8.23e-05)|Breast(139;0.00378)|Prostate(109;0.0107)|all_hematologic(4;0.014)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)|Acute lymphoblastic leukemia(4;0.143)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000306)|BRCA - Breast invasive adenocarcinoma(63;0.125)		CCACCCGATAGGAGTCTCGAA	0.622													7	25					0	0	0.003080	0	0
TPT1	7178	broad.mit.edu	37	13	45913690	45913690	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:45913690A>C	uc001uzy.1	-	4	434	c.341T>G	c.(340-342)TTT>TGT	p.F114C	TPT1_uc001uzz.1_Missense_Mutation_p.F80C|SNORA31_uc001vaa.1_5'Flank|LOC100190939_uc010tfr.1_5'Flank|LOC100190939_uc001vac.2_5'Flank	NM_003295	NP_003286	P13693	TCTP_HUMAN	tumor protein, translationally-controlled 1	114					anti-apoptosis|response to virus	extracellular space|multivesicular body	calcium ion binding|protein binding				0		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000232)		CCCTGTCATAAAAGGTTTTAC	0.328													31	63					0	0	0.003755	0	0
FAM10A4	145165	broad.mit.edu	37	13	50746534	50746534	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:50746534G>A	uc001vej.2	+	1	381	c.310G>A	c.(310-312)GAG>AAG	p.E104K	DLEU1_uc010adl.1_Intron|DLEU1_uc001vee.1_Intron|DLEU1_uc010adm.1_Intron|DLEU1_uc010adn.1_Intron|DLEU1_uc001vef.1_Intron|DLEU1_uc001veg.1_Intron|DLEU1_uc010tgn.1_Intron|DLEU1_uc001vei.1_Intron|DLEU1_uc010ado.1_Intron|DLEU1_uc010adp.1_Intron	NR_002183				SubName: Full=ST13 protein;												0						GGAGATAACAGAGGAGGTGAT	0.408													10	21					0	0	0.008291	0	0
PCDH9	5101	broad.mit.edu	37	13	67799944	67799944	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:67799944G>A	uc001vik.2	-	2	3321	c.2629C>T	c.(2629-2631)CCC>TCC	p.P877S	PCDH9_uc001vil.2_Missense_Mutation_p.P877S|PCDH9_uc010thl.1_Missense_Mutation_p.P877S|PCDH9_uc001vin.3_Missense_Mutation_p.P877S	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	877	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		GAGCTTTTGGGAGACTTCCTT	0.443													17	71					0	0	0.004007	0	0
KLHL1	57626	broad.mit.edu	37	13	70371006	70371006	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:70371006C>T	uc001vip.2	-	7	2297	c.1503G>A	c.(1501-1503)GTG>GTA	p.V501V	KLHL1_uc010thm.1_Silent_p.V440V	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	501	Kelch 1.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CAATAACAGCCACACCAAACT	0.408													17	96					0	0	0.004990	0	0
DIS3	22894	broad.mit.edu	37	13	73350187	73350187	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:73350187G>A	uc001vix.3	-	5	1072	c.698C>T	c.(697-699)CCC>CTC	p.P233L	DIS3_uc001viy.3_Missense_Mutation_p.P203L|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	233					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		CTTACTTAAGGGAAGATGCTC	0.353										Multiple Myeloma(4;0.011)			11	16					0	0	0.000978	0	0
LMO7	4008	broad.mit.edu	37	13	76382250	76382250	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:76382250C>T	uc001vjv.2	+	7	1892	c.1132C>T	c.(1132-1134)CCC>TCC	p.P378S	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Missense_Mutation_p.P284S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	663						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		CACCCCTGGCCCCTGCAGTGA	0.532													6	32					0	0	0.001168	0	0
MYCBP2	23077	broad.mit.edu	37	13	77742742	77742742	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:77742742G>A	uc001vkf.2	-	41	5912	c.5821C>T	c.(5821-5823)CCG>TCG	p.P1941S	MYCBP2_uc010aev.2_Missense_Mutation_p.P1345S	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1941					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GCAACTGACGGAAGCAATTGT	0.438													25	52					0	0	0.004656	0	0
SCEL	8796	broad.mit.edu	37	13	78178501	78178501	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:78178501C>T	uc001vki.2	+	19	1278	c.1108C>T	c.(1108-1110)CTT>TTT	p.L370F	SCEL_uc001vkj.2_Missense_Mutation_p.L350F|SCEL_uc010thx.1_Intron	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	370	16 X approximate tandem repeats.|7.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		AAAAAAAGACCTTGATGGGCT	0.323													31	73					0	0	0.002096	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454988	84454988	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:84454988C>T	uc001vlk.2	-	1	1541	c.655G>A	c.(655-657)GAT>AAT	p.D219N		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	219	Extracellular (Potential).|LRRCT 1.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GAGAGCAGATCACAGGTGCAG	0.547													25	34					0	0	0.003954	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368957	86368957	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:86368957C>T	uc001vll.1	-	2	2146	c.1687G>A	c.(1687-1689)GAA>AAA	p.E563K	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	563	LRRCT 2.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CAGAGAATTTCACTATTTAGG	0.433													30	40					0	0	0.009535	0	0
GPC5	2262	broad.mit.edu	37	13	92345554	92345554	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:92345554G>A	uc010tif.1	+	3	805	c.439G>A	c.(439-441)GAT>AAT	p.D147N		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	147						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				GTTCTTCACTGATGTGGGGCT	0.408													20	74					0	0	0.010504	0	0
GPC6	10082	broad.mit.edu	37	13	94197620	94197620	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:94197620G>A	uc001vlt.2	+	2	897	c.265G>A	c.(265-267)GAG>AAG	p.E89K	GPC6_uc010tig.1_Missense_Mutation_p.E89K|GPC6_uc001vlu.1_Missense_Mutation_p.E19K	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	89						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				CCTTGTGGAAGAGACAAGCCA	0.403													33	64					0	0	0.004289	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485190	97485190	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:97485190C>T	uc001vmw.2	+	2	1178	c.1154C>T	c.(1153-1155)TCT>TTT	p.S385F		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	385	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					ACGCGGGCTTCTAACGTGGAG	0.502													23	52					0	0	0.003954	0	0
FARP1	10160	broad.mit.edu	37	13	99047617	99047618	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:99047617_99047618CC>TT	uc001vnj.2	+	13	1637_1638	c.1301_1302CC>TT	c.(1300-1302)CCC>CTT	p.P434L	FARP1_uc001vnh.2_Missense_Mutation_p.P434L	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	434					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			AGGAGAAGCCCCGCGGGTAACA	0.693													10	16					0	0	0.004672	0	0
DOCK9	23348	broad.mit.edu	37	13	99540745	99540745	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:99540745G>A	uc001vnt.2	-	17	1904	c.1849C>T	c.(1849-1851)CCC>TCC	p.P617S	DOCK9_uc001vnw.2_Missense_Mutation_p.P616S|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.P617S|DOCK9_uc010tis.1_Missense_Mutation_p.P616S|DOCK9_uc010tit.1_Missense_Mutation_p.P617S|DOCK9_uc010afu.1_Missense_Mutation_p.P432S	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	617					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					AACGTGATGGGAGTTTTACTG	0.363													31	50					0	0	0.002096	0	0
GPR18	2841	broad.mit.edu	37	13	99907871	99907871	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:99907871C>T	uc001voe.3	-	3	757	c.256G>A	c.(256-258)GAA>AAA	p.E86K	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.E86K	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	86	Extracellular (Potential).			E -> A (in Ref. 1; AAB65819).		integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	AATGGCCATTCATCTTTTGCA	0.388													14	39					0	0	0.004007	0	0
PCCA	5095	broad.mit.edu	37	13	100953732	100953732	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:100953732G>A	uc001voo.2	+	13	1122	c.1084G>A	c.(1084-1086)GAA>AAA	p.E362K	PCCA_uc010aga.2_Missense_Mutation_p.E336K|PCCA_uc010tiz.1_Missense_Mutation_p.E362K|PCCA_uc001vop.2_RNA	NM_000282	NP_000273	P05165	PCCA_HUMAN	propionyl-Coenzyme A carboxylase, alpha	362	ATP-grasp.|Biotin carboxylation.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|enzyme binding|metal ion binding|propionyl-CoA carboxylase activity			skin(2)	2	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Biotin(DB00121)	TCCTGTCACAGAATGCATTAC	0.458													47	56					0	0	0.003610	0	0
NALCN	259232	broad.mit.edu	37	13	101712174	101712174	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:101712174G>A	uc001vox.1	-	42	5090	c.4901C>T	c.(4900-4902)CCT>CTT	p.P1634L		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1634	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCATACCTCAGGTTGCATGCT	0.517													21	63					0	0	0.002780	0	0
NALCN	259232	broad.mit.edu	37	13	101717830	101717830	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:101717830G>A	uc001vox.1	-	40	4719	c.4530C>T	c.(4528-4530)CTC>CTT	p.L1510L		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1510	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GCTTAAACAGGAGCTTGTCCT	0.602													20	71					0	0	0.007413	0	0
COL4A1	1282	broad.mit.edu	37	13	110831369	110831369	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:110831369G>A	uc001vqw.3	-	31	2481	c.2359C>T	c.(2359-2361)CCT>TCT	p.P787S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	787	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GGCAATCCAGGAGGTCCCGGT	0.622													4	16					0	0	0.000602	0	0
COL4A1	1282	broad.mit.edu	37	13	110838746	110838746	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:110838746G>A	uc001vqw.3	-	26	2005	c.1883C>T	c.(1882-1884)TCC>TTC	p.S628F	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	628	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CAGGCCTGGGGATCCAGGGCC	0.622													66	115					0	0	0.003610	0	0
PCID2	55795	broad.mit.edu	37	13	113852568	113852568	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr13:113852568G>A	uc010tju.1	-	3	218	c.137C>T	c.(136-138)CCA>CTA	p.P46L	PCID2_uc010tjv.1_Missense_Mutation_p.P46L|PCID2_uc010tjw.1_Missense_Mutation_p.P46L|PCID2_uc001vte.2_5'UTR|PCID2_uc001vtd.2_5'UTR|PCID2_uc001vtf.2_5'UTR|PCID2_uc001vtg.1_RNA	NM_001127203	NP_001120675	Q5JVF3	PCID2_HUMAN	PCI domain containing 2	46					negative regulation of apoptosis|negative regulation of cysteine-type endopeptidase activity|positive regulation of mitotic cell cycle spindle assembly checkpoint|positive regulation of transcription, DNA-dependent|regulation of mRNA stability|spleen development		protein binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.216)|all_epithelial(44;0.234)	all cancers(43;0.104)			CTTCTCCTCTGGAGAGGCCAT	0.358													60	85					0	0	0.003610	0	0
OR11H12	440153	broad.mit.edu	37	14	19378561	19378561	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:19378561C>T	uc010tkp.1	+	1	968	c.968C>T	c.(967-969)TCC>TTC	p.S323F		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	323	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGGGAAGTTCCAACATAATC	0.358													55	102					0	0	0.003610	0	0
OR4K2	390431	broad.mit.edu	37	14	20344630	20344630	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:20344630C>T	uc001vwh.1	+	1	204	c.204C>T	c.(202-204)ATC>ATT	p.I68I		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCTTTCAATCATTGATATGT	0.423													42	113					0	0	0.007835	0	0
OR4K5	79317	broad.mit.edu	37	14	20389214	20389214	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:20389214C>T	uc010tkw.1	+	1	449	c.449C>T	c.(448-450)GCT>GTT	p.A150V		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCTCCTGGGCTGTGAGCTTG	0.443													62	125					0	0	0.003610	0	0
OR4K1	79544	broad.mit.edu	37	14	20404396	20404396	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:20404396G>A	uc001vwj.1	+	1	571	c.571G>A	c.(571-573)GAT>AAT	p.D191N		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GGCTTGCATGGATACATATGA	0.443													37	75					0	0	0.006999	0	0
OR4K17	390436	broad.mit.edu	37	14	20586276	20586276	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:20586276C>T	uc001vwo.1	+	1	711	c.711C>T	c.(709-711)ATC>ATT	p.I237I		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GTGGCATAATCTCCCTGAGCT	0.413													27	97					0	0	0.004656	0	0
OR4K17	390436	broad.mit.edu	37	14	20586278	20586278	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:20586278C>T	uc001vwo.1	+	1	713	c.713C>T	c.(712-714)TCC>TTC	p.S238F		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GGCATAATCTCCCTGAGCTGT	0.413													25	99					0	0	0.003954	0	0
OR11H6	122748	broad.mit.edu	37	14	20692283	20692283	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:20692283G>A	uc010tlc.1	+	1	415	c.415G>A	c.(415-417)GAT>AAT	p.D139N		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		TATGGCTTATGATCGGTACCT	0.423													28	93					0	0	0.009535	0	0
PNP	4860	broad.mit.edu	37	14	20943275	20943275	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:20943275G>A	uc001vxo.3	+	5	658	c.516G>A	c.(514-516)CAG>CAA	p.Q172Q	PNP_uc010ahn.2_3'UTR|PNP_uc001vxn.3_Silent_p.Q43Q	NM_000270	NP_000261	P00491	PNPH_HUMAN	nucleoside phosphorylase	172					immune response|inosine catabolic process|interleukin-2 secretion|NAD biosynthesis via nicotinamide riboside salvage pathway|nicotinamide riboside catabolic process|positive regulation of alpha-beta T cell differentiation|positive regulation of T cell proliferation|purine base metabolic process|purine nucleotide catabolic process|purine-containing compound salvage|response to drug|urate biosynthetic process	cytoskeleton|cytosol	drug binding|nucleoside binding|phosphate binding|purine base binding|purine-nucleoside phosphorylase activity			ovary(2)	2					Aciclovir(DB00787)|Cladribine(DB00242)|Mercaptopurine(DB01033)	CTATGAGGCAGAGGGCTCTCA	0.493													23	61					0	0	0.003954	0	0
FLJ10357	55701	broad.mit.edu	37	14	21541322	21541322	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:21541322G>A	uc001vzp.2	+	2	151	c.122G>A	c.(121-123)CGG>CAG	p.R41Q	NDRG2_uc010tll.1_5'Flank|FLJ10357_uc001vzn.1_Missense_Mutation_p.R41Q|FLJ10357_uc001vzo.1_5'UTR|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_5'UTR	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	41					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		AGGACTTATCGGGAGGACGCA	0.607													12	25					0	0	0.001855	0	0
SUPT16H	11198	broad.mit.edu	37	14	21838552	21838552	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:21838552G>A	uc001wao.2	-	4	765	c.426C>T	c.(424-426)TTC>TTT	p.F142F		NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	142					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		ACTCTCCAGGGAATTTGTCTT	0.378													48	136					0	0	0.003610	0	0
CHD8	57680	broad.mit.edu	37	14	21868700	21868700	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:21868700G>A	uc001was.1	-	23	3699	c.3605C>T	c.(3604-3606)ACC>ATC	p.T1202I	CHD8_uc001war.1_Missense_Mutation_p.T1098I|CHD8_uc001wav.1_Missense_Mutation_p.T644I	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1481					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CCGACAAATGGTCTCCACATC	0.428													7	21					0	0	0.003080	0	0
SALL2	6297	broad.mit.edu	37	14	21991828	21991828	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:21991828G>A	uc001wbe.2	-	2	2316	c.2034C>T	c.(2032-2034)TTC>TTT	p.F678F	SALL2_uc010tly.1_Silent_p.F676F|SALL2_uc010tlz.1_Silent_p.F541F|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Silent_p.F543F|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	678	C2H2-type 4.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		TGTGGCCCACGAAATGTGCAC	0.567													14	39					0	0	0.001855	0	0
OR10G2	26534	broad.mit.edu	37	14	22102213	22102213	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:22102213G>A	uc010tmc.1	-	1	786	c.786C>T	c.(784-786)TTC>TTT	p.F262F		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	262	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TAAGGTAGATGAAAATACAGG	0.547													16	31					0	0	0.004007	0	0
RBM23	55147	broad.mit.edu	37	14	23380554	23380554	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:23380554G>A	uc001whg.2	-	2	248	c.49C>T	c.(49-51)CCC>TCC	p.P17S	RBM23_uc001whh.2_Missense_Mutation_p.P17S|RBM23_uc001whi.2_Missense_Mutation_p.P17S|RBM23_uc010tne.1_5'UTR|RBM23_uc001whj.2_Intron|RBM23_uc001whk.1_Missense_Mutation_p.P17S	NM_001077351	NP_001070819	Q86U06	RBM23_HUMAN	RNA binding motif protein 23 isoform 1	17					mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.0128)		TTTTTATAGGGAGCTTCCAGC	0.368													52	131					0	0	0.003610	0	0
CDH24	64403	broad.mit.edu	37	14	23524311	23524311	+	Silent	SNP	G	A	A	rs140243541	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:23524311G>A	uc001wil.2	-	3	713	c.453C>T	c.(451-453)CCC>CCT	p.P151P	CDH24_uc010akf.2_Silent_p.P151P|CDH24_uc001win.3_Silent_p.P151P	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	151	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		AGGGCCCAAGGGGAAAAATGG	0.592											OREG0022594	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	88					0	0	0.003610	0	0
CEBPE	1053	broad.mit.edu	37	14	23588123	23588123	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:23588123C>A	uc001wiv.1	-	1	352	c.178G>T	c.(178-180)GTG>TTG	p.V60L		NM_001805	NP_001796	Q15744	CEBPE_HUMAN	CCAAT/enhancer binding protein epsilon	60						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0064)		GCTGGCTTCACGGCAAAGAGA	0.642													23	56					6.44725e-10	7.1685e-10	0.002299	1	0
MYH6	4624	broad.mit.edu	37	14	23853878	23853878	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:23853878G>A	uc001wjv.2	-	36	5405	c.5338C>T	c.(5338-5340)CAC>TAC	p.H1780Y		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1780	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CGCTCCAGGTGGGCGCTGGTG	0.622													23	74					0	0	0.005443	0	0
MYH7	4625	broad.mit.edu	37	14	23886806	23886806	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:23886806C>T	uc001wjx.2	-	31	4365	c.4259G>A	c.(4258-4260)CGG>CAG	p.R1420Q		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1420	Potential.		R -> W (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		ATTCTGTAGCCGGTGCTTGGT	0.602													35	78					0	0	0.004878	0	0
MYH7	4625	broad.mit.edu	37	14	23891523	23891523	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:23891523G>A	uc001wjx.2	-	25	3217	c.3111C>T	c.(3109-3111)TCC>TCT	p.S1037S		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1037	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTTGCTCCAGGGATCCTTCCA	0.552													21	36					0	0	0.002299	0	0
MYH7	4625	broad.mit.edu	37	14	23896993	23896993	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:23896993G>A	uc001wjx.2	-	16	1795	c.1689C>T	c.(1687-1689)TTC>TTT	p.F563F		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	563	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GTGGCTTCTGGAAGTTGGCGG	0.542													23	62					0	0	0.002299	0	0
JPH4	84502	broad.mit.edu	37	14	24040243	24040243	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:24040243G>A	uc001wkq.2	-	6	2615	c.1697C>T	c.(1696-1698)CCC>CTC	p.P566L	AP1G2_uc001wkl.2_5'Flank|AP1G2_uc001wkn.2_5'Flank|AP1G2_uc010tnp.1_5'Flank|AP1G2_uc010akt.2_5'Flank|JPH4_uc010tnr.1_Missense_Mutation_p.P231L|JPH4_uc001wkr.2_Missense_Mutation_p.P566L	NM_032452	NP_115828	Q96JJ6	JPH4_HUMAN	junctophilin 4	566	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane				ovary(1)|pancreas(1)	2	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		CATGGCGATGGGCTCAGGCTC	0.682													15	32					0	0	0.002450	0	0
JPH4	84502	broad.mit.edu	37	14	24040471	24040471	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:24040471G>A	uc001wkq.2	-	6	2387	c.1469C>T	c.(1468-1470)TCC>TTC	p.S490F	JPH4_uc010tnr.1_Missense_Mutation_p.S155F|JPH4_uc001wkr.2_Missense_Mutation_p.S490F	NM_032452	NP_115828	Q96JJ6	JPH4_HUMAN	junctophilin 4	490	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane				ovary(1)|pancreas(1)	2	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		TTTGGGGCTGGAGAAGGGACC	0.682													41	72					0	0	0.006230	0	0
ADCY4	196883	broad.mit.edu	37	14	24787879	24787879	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:24787879C>T	uc001wov.2	-	24	3068	c.3062G>A	c.(3061-3063)GGA>GAA	p.G1021E	ADCY4_uc001wow.2_Missense_Mutation_p.G1021E|ADCY4_uc010toh.1_Missense_Mutation_p.G707E|ADCY4_uc001wox.2_Missense_Mutation_p.G1021E|ADCY4_uc001woy.2_Missense_Mutation_p.G1021E	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	1021	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		GCCAAGGACTCCTGTACTCTC	0.552													33	42					0	0	0.003271	0	0
AKAP6	9472	broad.mit.edu	37	14	33068655	33068655	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:33068655G>A	uc001wrq.2	+	6	2679	c.2509G>A	c.(2509-2511)GAA>AAA	p.E837K	AKAP6_uc010aml.2_Missense_Mutation_p.E834K	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	837	Spectrin 1.				protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TGCTCTCAAGGAAGCTGTGGA	0.403													32	78					0	0	0.003755	0	0
Unknown	0	broad.mit.edu	37	14	36840903	36840903	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:36840903G>A	uc001wtp.2	+	1	534	c.285G>A	c.(283-285)AAG>AAA	p.K95K		NM_199286	NP_954980			stella																		AGAGAGAAAAGATGGCAAGAT	0.483													15	24					0	0	0.003163	0	0
MIA2	117153	broad.mit.edu	37	14	39716748	39716748	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:39716748G>A	uc001wux.2	+	4	1164	c.970G>A	c.(970-972)GAT>AAT	p.D324N	MIA2_uc010amy.1_Missense_Mutation_p.D255N	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	324						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TGGAGATGAGGATACAGGGCT	0.408													15	47					0	0	0.004990	0	0
FSCB	84075	broad.mit.edu	37	14	44975396	44975396	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:44975396G>A	uc001wvn.2	-	1	1104	c.795C>T	c.(793-795)TTC>TTT	p.F265F		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	265						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TTTTAGCTGGGAATTTTTCTG	0.453													17	52					0	0	0.010504	0	0
PYGL	5836	broad.mit.edu	37	14	51390768	51390768	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:51390768G>A	uc001wyu.2	-	5	706	c.579C>T	c.(577-579)TCC>TCT	p.S193S	PYGL_uc010tqq.1_Silent_p.S159S|PYGL_uc001wyv.2_5'UTR|PYGL_uc010anz.1_5'UTR|PYGL_uc001wyw.3_Silent_p.S193S	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	193					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	ATTCTGGGCGGGACTTCTCCC	0.433													30	57					0	0	0.002096	0	0
SLC35F4	341880	broad.mit.edu	37	14	58056038	58056038	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:58056038G>A	uc001xdb.1	-	3	591	c.591C>T	c.(589-591)TTC>TTT	p.F197F	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Silent_p.F38F	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						ACCAAGTCATGAAAAATGGGC	0.358													24	45					0	0	0.002780	0	0
SLC35F4	341880	broad.mit.edu	37	14	58060704	58060704	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:58060704C>T	uc001xdb.1	-	2	350	c.350G>A	c.(349-351)GGA>GAA	p.G117E	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_5'UTR	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						TCCTGAGGATCCTTGGTTTTG	0.468													21	39					0	0	0.002780	0	0
DAAM1	23002	broad.mit.edu	37	14	59798110	59798110	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:59798110C>T	uc001xdz.1	+	14	1869	c.1744C>T	c.(1744-1746)CCC>TCC	p.P582S	DAAM1_uc001xea.1_Missense_Mutation_p.P582S	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	582	FH1.|Pro-rich.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		AGGGCCTCCTCCCTTAGGGGC	0.433													14	34					0	0	0.001855	0	0
DAAM1	23002	broad.mit.edu	37	14	59820639	59820639	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:59820639G>A	uc001xdz.1	+	20	2468	c.2343G>A	c.(2341-2343)AAG>AAA	p.K781K	DAAM1_uc001xea.1_Silent_p.K771K|DAAM1_uc001xec.1_5'Flank	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	781	FH2.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		ACTTCAAAAAGAAGTTTGCAG	0.348													5	19					0	0	0.000602	0	0
KCNH5	27133	broad.mit.edu	37	14	63175075	63175075	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:63175075G>A	uc001xfx.2	-	11	2169	c.2118C>T	c.(2116-2118)GTC>GTT	p.V706V	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	706	Calmodulin-binding (Potential).|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		AGAGCTTTCTGACTGGGTGGT	0.542													39	118					0	0	0.003214	0	0
SYNE2	23224	broad.mit.edu	37	14	64690033	64690033	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:64690033G>A	uc001xgm.2	+	112	20478	c.20248G>A	c.(20248-20250)GAG>AAG	p.E6750K	SYNE2_uc001xgl.2_Missense_Mutation_p.E6773K|SYNE2_uc010apy.2_Missense_Mutation_p.E3135K|SYNE2_uc001xgn.2_Missense_Mutation_p.E1712K|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.E720K|SYNE2_uc001xgq.2_Missense_Mutation_p.E1129K|SYNE2_uc001xgr.2_Missense_Mutation_p.E533K|SYNE2_uc010tsi.1_Missense_Mutation_p.E407K|SYNE2_uc001xgs.2_Missense_Mutation_p.E421K|SYNE2_uc001xgt.2_Missense_Mutation_p.E295K	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6750	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GCATGTTATTGAGAAGAAACT	0.418													11	29					0	0	0.001368	0	0
SPTB	6710	broad.mit.edu	37	14	65239632	65239632	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:65239632C>T	uc001xht.2	-	25	5273	c.5219G>A	c.(5218-5220)GGG>GAG	p.G1740E	SPTB_uc001xhr.2_Missense_Mutation_p.G1740E|SPTB_uc001xhs.2_Missense_Mutation_p.G1740E|SPTB_uc001xhu.2_Missense_Mutation_p.G1740E|SPTB_uc010aqi.2_Missense_Mutation_p.G401E	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1740	Spectrin 14.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCCAATCGCCCCGGTCTCCCG	0.627													6	24					0	0	0.003080	0	0
RDH12	145226	broad.mit.edu	37	14	68191872	68191872	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:68191872G>A	uc001xjz.3	+	5	568	c.244G>A	c.(244-246)GAA>AAA	p.E82K		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	82					photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	TGCTGCCAGTGAAATCCGAGT	0.512													45	126					0	0	0.003610	0	0
MAP3K9	4293	broad.mit.edu	37	14	71209294	71209294	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:71209294C>T	uc001xmm.2	-	6	1341	c.1341G>A	c.(1339-1341)TGG>TGA	p.W447*	MAP3K9_uc010ttk.1_Nonsense_Mutation_p.W184*|MAP3K9_uc001xmk.2_Nonsense_Mutation_p.W141*|MAP3K9_uc001xml.2_Nonsense_Mutation_p.W447*	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	447	Leucine-zipper 1.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		GCTCCTCCTCCCAGGTGCGAA	0.637													11	17					0	0	0.001368	0	0
ZFYVE1	53349	broad.mit.edu	37	14	73464862	73464862	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:73464862C>T	uc001xnm.2	-	3	1285	c.645G>A	c.(643-645)GAG>GAA	p.E215E	ZFYVE1_uc010arj.2_Silent_p.E215E	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	215						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		CAGTGCAGGACTCCTGGGTCG	0.498													11	48					0	0	0.000978	0	0
C14orf43	91748	broad.mit.edu	37	14	74203779	74203779	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:74203779G>A	uc001xot.2	-	3	2454	c.1671C>T	c.(1669-1671)AAC>AAT	p.N557N	C14orf43_uc001xou.2_Silent_p.N557N|C14orf43_uc010tud.1_Silent_p.N557N|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	557					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		GCTCAGCAGGGTTCTGTTCAG	0.602													24	46					0	0	0.003330	0	0
ENTPD5	957	broad.mit.edu	37	14	74444066	74444066	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:74444066G>A	uc010tuo.1	-	7	764	c.453C>T	c.(451-453)ATC>ATT	p.I151I	ENTPD5_uc001xpi.2_Silent_p.I151I	NM_001249	NP_001240	O75356	ENTP5_HUMAN	ectonucleoside triphosphate diphosphohydrolase 5	151					'de novo' posttranslational protein folding|ATP metabolic process|cell growth|cell proliferation|glycolysis|protein N-linked glycosylation|regulation of phosphatidylinositol 3-kinase cascade	endoplasmic reticulum lumen	guanosine-diphosphatase activity|uridine-diphosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00394)		ACTTCCTGAAGATCTCCTTTA	0.413													14	39					0	0	0.002450	0	0
YLPM1	56252	broad.mit.edu	37	14	75265512	75265512	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:75265512C>T	uc001xqj.3	+	5	3636	c.3512C>T	c.(3511-3513)CCA>CTA	p.P1171L	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	976	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CCATTCAGACCAGAACCAGGA	0.542													13	43					0	0	0.002450	0	0
ESRRB	2103	broad.mit.edu	37	14	76964656	76964656	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:76964656C>T	uc001xsq.1	+	7	1224	c.1157C>T	c.(1156-1158)CCC>CTC	p.P386L	ESRRB_uc001xsr.2_Missense_Mutation_p.P386L|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	386						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		CATGAGGAGCCCTGGAGGACG	0.617													8	18					0	0	0.003080	0	0
POMT2	29954	broad.mit.edu	37	14	77765075	77765075	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:77765075G>A	uc001xti.2	-	8	1164	c.963C>T	c.(961-963)GCC>GCT	p.A321A	POMT2_uc001xth.1_Silent_p.A19A	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	321					protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		CTGAAAGCCGGGCCTGGAAGG	0.532													11	8					0	0	0.001368	0	0
DIO2	1734	broad.mit.edu	37	14	80669341	80669341	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:80669341C>T	uc010tvq.1	-	4	915	c.513G>A	c.(511-513)GCG>GCA	p.A171A	DIO2_uc010tvp.1_Silent_p.A207A|DIO2_uc001xut.2_RNA|DIO2_uc010asx.2_3'UTR|DIO2_uc010tvr.1_Silent_p.A171A|DIO2_uc010asy.2_3'UTR	NM_000793	NP_000784	Q92813	IOD2_HUMAN	deiodinase, iodothyronine, type II isoform a	171					hormone biosynthetic process|selenocysteine incorporation|thyroid hormone generation	integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|ubiquitin protein ligase binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0281)		CCCCCGGTATCGCCCAGCCAT	0.557											OREG0022848	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	44					0	0	0.009535	0	0
STON2	85439	broad.mit.edu	37	14	81744041	81744041	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:81744041G>A	uc010tvu.1	-	4	1815	c.1614C>T	c.(1612-1614)TTC>TTT	p.F538F	STON2_uc001xvk.1_Silent_p.F538F|STON2_uc010tvt.1_Silent_p.F335F	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	538	SHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TGAAACTCAGGAAGTCATCGT	0.488													31	52					0	0	0.007291	0	0
FLRT2	23768	broad.mit.edu	37	14	86088740	86088740	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:86088740G>A	uc001xvr.2	+	2	1649	c.882G>A	c.(880-882)GGG>GGA	p.G294G	FLRT2_uc010atd.2_Silent_p.G294G	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	294	Extracellular (Potential).|LRR 10.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TGACTCAAGGGGTTTTTGATA	0.443													79	187					0	0	0.003610	0	0
KCNK10	54207	broad.mit.edu	37	14	88658580	88658580	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:88658580C>T	uc001xwo.2	-	5	1298	c.841G>A	c.(841-843)GAT>AAT	p.D281N	KCNK10_uc001xwm.2_Missense_Mutation_p.D286N|KCNK10_uc001xwn.2_Missense_Mutation_p.D286N	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	281					signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GCCACAAAATCACCAAAGCCC	0.522													30	48					0	0	0.002096	0	0
TTC8	123016	broad.mit.edu	37	14	89305844	89305844	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:89305844G>C	uc010ath.2	+	2	297	c.163G>C	c.(163-165)GAT>CAT	p.D55H	TTC8_uc010atg.1_RNA|TTC8_uc001xxl.2_5'UTR|TTC8_uc010ati.2_5'UTR|TTC8_uc001xxm.2_Missense_Mutation_p.D55H|TTC8_uc010atj.2_Intron|TTC8_uc001xxi.2_Missense_Mutation_p.D65H|TTC8_uc001xxj.2_Missense_Mutation_p.D55H|TTC8_uc001xxk.2_Missense_Mutation_p.D55H	NM_198309	NP_938051	Q8TAM2	TTC8_HUMAN	tetratricopeptide repeat domain 8 isoform B	65					cilium assembly|establishment of anatomical structure orientation|sensory processing	BBSome|centrosome|cilium membrane|microtubule basal body	protein binding				0						GGTATACATAGATGAAATTGA	0.328									Bardet-Biedl_syndrome				20	40					0	0	0.010504	0	0
CATSPERB	79820	broad.mit.edu	37	14	92189438	92189438	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:92189438G>A	uc001xzs.1	-	4	404	c.264C>T	c.(262-264)ATC>ATT	p.I88I		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	88					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TACTATTCATGATTCCCAAGC	0.338													20	43					0	0	0.010504	0	0
KIAA1409	57578	broad.mit.edu	37	14	94083628	94083628	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:94083628C>T	uc001ybv.1	+	26	3820	c.3737C>T	c.(3736-3738)GCC>GTC	p.A1246V	KIAA1409_uc001ybs.1_Missense_Mutation_p.A1224V	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1401						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGGTTGAAGGCCTTGCTTGTC	0.498													30	70					0	0	0.002096	0	0
FAM181A	90050	broad.mit.edu	37	14	94395482	94395482	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:94395482C>T	uc001ybz.1	+	3	1344	c.1037C>T	c.(1036-1038)CCC>CTC	p.P346L	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.P284L|FAM181A_uc001yca.1_Missense_Mutation_p.P284L	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	346											0						GTGCCCCCACCCATCTTCAAT	0.662													17	46					0	0	0.004990	0	0
SERPINA6	866	broad.mit.edu	37	14	94772531	94772531	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:94772531C>T	uc001ycv.2	-	4	1013	c.909G>A	c.(907-909)AAG>AAA	p.K303K	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	303					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	AGATGGTGACCTTTGGAATGT	0.552													17	32					0	0	0.007413	0	0
SERPINA9	327657	broad.mit.edu	37	14	94933631	94933631	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:94933631C>T	uc001ydf.2	-	3	932	c.771G>A	c.(769-771)ATG>ATA	p.M257I	SERPINA9_uc001yde.2_Missense_Mutation_p.M157I|SERPINA9_uc010avc.2_Missense_Mutation_p.M108I|SERPINA9_uc001ydg.2_Missense_Mutation_p.M221I|SERPINA9_uc001ydh.1_Missense_Mutation_p.M257I|SERPINA9_uc001ydi.1_Missense_Mutation_p.M221I	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	239					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		TCTGGTGCATCATGGGGACAT	0.512													12	30					0	0	0.004007	0	0
C14orf49	161176	broad.mit.edu	37	14	95923555	95923556	+	Missense_Mutation	DNP	TC	GT	GT	rs139621209		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:95923555_95923556TC>GT	uc001yei.3	-	4	762_763	c.747_748GA>AC	c.(745-750)CGGAAC>CGACAC	p.N250H	C14orf49_uc010avi.2_Missense_Mutation_p.N250H|C14orf49_uc001yej.1_Missense_Mutation_p.N250H	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	250	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		AGCTTGCAGTTCCGCCCCAGGC	0.619													45	79					0	0	0.004672	0	0
BDKRB2	624	broad.mit.edu	37	14	96703494	96703494	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:96703494C>T	uc010avm.1	+	2	246	c.50C>T	c.(49-51)TCC>TTC	p.S17F	BDKRB2_uc010avl.1_Missense_Mutation_p.P77S|BDKRB2_uc010twu.1_5'UTR|BDKRB2_uc001yfg.2_Missense_Mutation_p.S17F	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	17	Extracellular (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		CGTGAGGACTCCGTGCCCACC	0.532													39	62					0	0	0.009718	0	0
ATG2B	55102	broad.mit.edu	37	14	96790257	96790257	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:96790257G>A	uc001yfi.2	-	16	2881	c.2516C>T	c.(2515-2517)TCG>TTG	p.S839L		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	839										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		GTCATCTGACGATGTTGTATC	0.343													17	39					0	0	0.010504	0	0
DEGS2	123099	broad.mit.edu	37	14	100615479	100615479	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:100615479G>A	uc001ygx.2	-	2	739	c.651C>T	c.(649-651)TTC>TTT	p.F217F		NM_206918	NP_996801	Q6QHC5	DEGS2_HUMAN	degenerative spermatocyte homolog 2, lipid	217	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	sphingosine hydroxylase activity				0		Melanoma(154;0.212)				CCAGGCCCAGGAAGGAGCTGG	0.637													25	70					0	0	0.003954	0	0
WARS	7453	broad.mit.edu	37	14	100820807	100820807	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:100820807G>A	uc001yhf.1	-	4	603	c.519C>T	c.(517-519)CAC>CAT	p.H173H	WARS_uc001yhe.1_5'Flank|WARS_uc001yhg.1_Silent_p.H173H|WARS_uc001yhh.1_Silent_p.H173H|WARS_uc001yhi.1_Silent_p.H132H|WARS_uc001yhj.1_Silent_p.H132H|WARS_uc001yhk.1_Silent_p.H132H|WARS_uc001yhl.1_Silent_p.H173H|WARS_uc010twz.1_Silent_p.H173H	NM_173701	NP_776049	P23381	SYWC_HUMAN	tryptophanyl-tRNA synthetase isoform a	173	HIGH region.				angiogenesis|negative regulation of cell proliferation|regulation of angiogenesis|tryptophanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|protein binding|tryptophan-tRNA ligase activity			breast(1)	1		all_cancers(154;0.00223)|all_lung(585;2.48e-06)|all_epithelial(191;0.000564)|Melanoma(154;0.152)			L-Tryptophan(DB00150)	ATGGAATGAGGTGACCTACAT	0.378													27	41					0	0	0.007291	0	0
RTL1	388015	broad.mit.edu	37	14	101351056	101351056	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:101351056C>T	uc010txj.1	-	1	129	c.70G>A	c.(70-72)GAG>AAG	p.E24K	uc010txk.1_RNA|MIR136_hsa-mir-136|MI0000475_RNA	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	24										pancreas(1)	1						TCGGAGGACTCCATTTGTTTT	0.542													8	37					0	0	0.004482	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103440442	103440442	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:103440442G>A	uc001ymi.1	-	12	1784	c.1552C>T	c.(1552-1554)CGC>TGC	p.R518C		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	518	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CGCTCTTGGCGAAGCGCCACT	0.557													15	28					0	0	0.004990	0	0
KIF26A	26153	broad.mit.edu	37	14	104641820	104641820	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:104641820C>T	uc001yos.3	+	12	2695	c.2695C>T	c.(2695-2697)CCT>TCT	p.P899S		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	899					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		TGCCAGCACCCCTCGAGGCAG	0.697													5	9					0	0	0.000602	0	0
ADSSL1	122622	broad.mit.edu	37	14	105207039	105207039	+	Missense_Mutation	SNP	C	T	T	rs144784529		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:105207039C>T	uc001ypd.2	+	6	652	c.578C>T	c.(577-579)TCC>TTC	p.S193F	INF2_uc010tyi.1_Intron|ADSSL1_uc001ype.2_Missense_Mutation_p.S236F|ADSSL1_uc001ypf.2_RNA	NM_152328	NP_689541	Q8N142	PURA1_HUMAN	adenylosuccinate synthase like 1 isoform 2	193					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(1)|central_nervous_system(1)	2		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.18)	L-Aspartic Acid(DB00128)	GATGAGTTTTCCTCCAGGTAC	0.597													25	66					0	0	0.003330	0	0
AKT1	207	broad.mit.edu	37	14	105246461	105246461	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:105246461G>A	uc001ypk.2	-	3	693	c.139C>T	c.(139-141)CAA>TAA	p.Q47*	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Nonsense_Mutation_p.Q47*|AKT1_uc010axa.2_Nonsense_Mutation_p.Q47*|AKT1_uc001ypm.2_Nonsense_Mutation_p.Q47*|AKT1_uc001ypn.2_Nonsense_Mutation_p.Q47*|AKT1_uc010tyk.1_5'Flank	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	47	PH.				activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	GCCTCACGTTGGTCCACATCC	0.577		1	Mis		breast|colorectal|ovarian|NSCLC								25	38					0	0	0.005443	0	0
GPR132	29933	broad.mit.edu	37	14	105518000	105518000	+	Silent	SNP	G	A	A	rs148183695		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:105518000G>A	uc001yqd.2	-	4	1373	c.474C>T	c.(472-474)ACC>ACT	p.T158T	GPR132_uc001yqc.2_5'UTR|GPR132_uc001yqe.2_Silent_p.T149T	NM_013345	NP_037477	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	158	Cytoplasmic (Potential).				response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		TGAGGATGGCGGTCCTCCGGC	0.617													18	37					0	0	0.007413	0	0
PACS2	23241	broad.mit.edu	37	14	105848902	105848902	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:105848902C>T	uc001yqt.2	+	14	1665	c.1490C>T	c.(1489-1491)TCG>TTG	p.S497L	PACS2_uc001yqs.2_Missense_Mutation_p.S422L|PACS2_uc001yqv.2_Missense_Mutation_p.S501L|PACS2_uc001yqu.2_Missense_Mutation_p.S501L	NM_015197	NP_056012	Q86VP3	PACS2_HUMAN	phosphofurin acidic cluster sorting protein 2	497					apoptosis|interspecies interaction between organisms	endoplasmic reticulum lumen|mitochondrion				pancreas(1)	1		all_cancers(154;0.0351)|all_epithelial(191;0.153)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)|Epithelial(46;0.036)	Epithelial(152;0.138)		GTCAACACCTCGGACTGGCAG	0.582													43	76					0	0	0.002852	0	0
ADAM6	8755	broad.mit.edu	37	14	106091498	106091498	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106091498C>T	uc010tyt.1	-	3647		c.62010G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						TCCGGGAGATCATGAGAGTGT	0.602													19	119					0	0	0.002299	0	0
ADAM6	8755	broad.mit.edu	37	14	106208050	106208050	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106208050C>T	uc010tyt.1	-	3628		c.59067G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Silent_p.L117L|uc001ysf.2_Silent_p.L117L					Parts of antibodies, mostly variable regions.												0						AGCCTTTGACCAGGCAGGTCA	0.622													78	96					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106235802	106235802	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106235802G>A	uc010tyt.1	-	3617		c.58045C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CGCTGGGGTAGAAGCCTTTGA	0.627													73	139					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106471545	106471545	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106471545G>A	uc010tyt.1	-	1891		c.36564C>T								Parts of antibodies, mostly variable regions.												0						ACCTGGGAGTGGACACCTGTA	0.572													23	6					0	0	0.002780	0	0
ADAM6	8755	broad.mit.edu	37	14	106692072	106692072	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106692072G>A	uc010tyt.1	-	753		c.20381C>T								Parts of antibodies, mostly variable regions.												0						ACTTTTCCATGATTCACCTTC	0.478													47	93					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106774143	106774143	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106774143C>T	uc010tyt.1	-	430		c.15618G>A								Parts of antibodies, mostly variable regions.												0						CGGAGGTGTCCATGGAGAAGA	0.532													5	15					0	0	0.000602	0	0
ADAM6	8755	broad.mit.edu	37	14	106780804	106780804	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106780804C>T	uc010tyt.1	-	413		c.15058G>A								Parts of antibodies, mostly variable regions.												0						GCAGCTGCACCTGGGACAGGA	0.587													19	46					0	0	0.003330	0	0
ADAM6	8755	broad.mit.edu	37	14	106899283	106899283	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106899283G>A	uc010tyt.1	-	266		c.10873C>T			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						GAGAGTCTCAGGGACCCCCCA	0.587													28	75					0	0	0.007291	0	0
ADAM6	8755	broad.mit.edu	37	14	106994065	106994065	+	RNA	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:106994065C>A	uc010tyt.1	-	187		c.8382G>T								Parts of antibodies, mostly variable regions.												0						AGGGACCCCCCAGGCTGTACC	0.582													43	91					3.16986e-14	3.5352e-14	0.003610	1	0
ADAM6	8755	broad.mit.edu	37	14	107062244	107062244	+	RNA	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:107062244A>T	uc010tyt.1	-	131		c.6351T>A								Parts of antibodies, mostly variable regions.												0						GACGGGTTGTAGTAGGTGCTC	0.577													26	61					0	0	0.004656	0	0
ADAM6	8755	broad.mit.edu	37	14	107218782	107218782	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr14:107218782G>A	uc010tyt.1	-	12		c.932C>T								Parts of antibodies, mostly variable regions.												0						GCCCTTCACGGAGTCCGCGTA	0.542													53	118					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	15	20489461	20489461	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:20489461C>T	uc001ytf.1	+	3		c.449C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		AACACAACTTCATTCCTAAAG	0.428													6	54					0	0	0.003080	0	0
C15orf2	23742	broad.mit.edu	37	15	24922388	24922388	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:24922388C>T	uc001ywo.2	+	1	1848	c.1374C>T	c.(1372-1374)ATC>ATT	p.I458I		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	458	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CATTCACAATCCCTAACTCTC	0.498													38	58					0	0	0.004289	0	0
C15orf2	23742	broad.mit.edu	37	15	24923425	24923425	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:24923425C>T	uc001ywo.2	+	1	2885	c.2411C>T	c.(2410-2412)TCC>TTC	p.S804F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	804					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCAGACACCTCCACTTTAGTG	0.532													52	77					0	0	0.003610	0	0
C15orf2	23742	broad.mit.edu	37	15	24924009	24924009	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:24924009G>T	uc001ywo.2	+	1	3469	c.2995G>T	c.(2995-2997)GGA>TGA	p.G999*		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	999					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTTACTGGTTGGAAATACTAT	0.527													6	28					0.00116845	0.00129279	0.001168	1	0
ATP10A	57194	broad.mit.edu	37	15	25966939	25966940	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:25966939_25966940GG>AA	uc010ayu.2	-	7	1333_1334	c.1227_1228CC>TT	c.(1225-1230)TGCCGA>TGTTGA	p.R410*		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	410	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		TTCAGAGCTCGGCACTGCAGCT	0.421													22	78					0	0	0.004672	0	0
HERC2	8924	broad.mit.edu	37	15	28457652	28457652	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:28457652G>A	uc001zbj.2	-	43	6970	c.6864C>T	c.(6862-6864)AAC>AAT	p.N2288N		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2288					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TTCCAGCGAGGTTCACCAACT	0.498													16	44					0	0	0.007413	0	0
RYR3	6263	broad.mit.edu	37	15	33920732	33920732	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:33920732C>T	uc001zhi.2	+	21	2705	c.2635C>T	c.(2635-2637)CTT>TTT	p.L879F	RYR3_uc010bar.2_Missense_Mutation_p.L879F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	879	4 X approximate repeats.|1.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CATCCATGAGCTTTGGGGAAT	0.453													25	21					0	0	0.006320	0	0
RYR3	6263	broad.mit.edu	37	15	34105726	34105726	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:34105726G>A	uc001zhi.2	+	74	10518	c.10448G>A	c.(10447-10449)CGG>CAG	p.R3483Q	RYR3_uc010bar.2_Missense_Mutation_p.R3478Q	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3483					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity	p.R3483W(1)		ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCAAAGCAACGGAAACGGGCA	0.512													14	97					0	0	0.004007	0	0
C15orf55	256646	broad.mit.edu	37	15	34649616	34649616	+	Missense_Mutation	SNP	G	A	A	rs138691157	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:34649616G>A	uc001zif.2	+	7	3478	c.3323G>A	c.(3322-3324)CGA>CAA	p.R1108Q	C15orf55_uc010ucc.1_Missense_Mutation_p.R1136Q|C15orf55_uc010ucd.1_Missense_Mutation_p.R1126Q	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	1108						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GGAGTAGTTCGACCCTCACAG	0.587			T	BRD3|BRD4	lethal midline carcinoma								16	51					0	0	0.007413	0	0
MEIS2	4212	broad.mit.edu	37	15	37387790	37387790	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:37387790G>A	uc001zjr.2	-	4	1450	c.413C>T	c.(412-414)TCC>TTC	p.S138F	MEIS2_uc001zjl.2_Missense_Mutation_p.S125F|MEIS2_uc010ucj.1_Missense_Mutation_p.S125F|MEIS2_uc001zjm.2_Missense_Mutation_p.S50F|MEIS2_uc001zjn.2_5'UTR|MEIS2_uc001zjo.2_Missense_Mutation_p.S138F|MEIS2_uc001zjp.2_Missense_Mutation_p.S138F|MEIS2_uc001zjs.2_Missense_Mutation_p.S138F|MEIS2_uc001zju.2_Missense_Mutation_p.S125F|MEIS2_uc001zjt.2_Missense_Mutation_p.S138F	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	138					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		TGGATTTGAGGAAAAAAGTGG	0.468													10	33					0	0	0.000978	0	0
BAHD1	22893	broad.mit.edu	37	15	40751535	40751535	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:40751535C>T	uc001zlu.2	+	2	943	c.872C>T	c.(871-873)CCA>CTA	p.P291L	BAHD1_uc001zlt.2_Missense_Mutation_p.P291L|BAHD1_uc010bbp.1_Missense_Mutation_p.P291L|BAHD1_uc001zlv.2_Missense_Mutation_p.P291L	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	291	Pro-rich.				heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		CCTTGTGGGCCATCCGTCCAG	0.667													10	45					0	0	0.006214	0	0
CASC5	57082	broad.mit.edu	37	15	40921491	40921491	+	Silent	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:40921491A>T	uc010bbs.1	+	14	5843	c.5682A>T	c.(5680-5682)ATA>ATT	p.I1894I	CASC5_uc010bbt.1_Silent_p.I1868I	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	1894	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		ATGGGAGAATAACAATAAGGG	0.378													10	14					0	0	0.008291	0	0
FAM82A2	55177	broad.mit.edu	37	15	41044186	41044186	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:41044186G>A	uc001zmo.1	-	3	522	c.378C>T	c.(376-378)GTC>GTT	p.V126V	FAM82A2_uc001zmp.1_Silent_p.V126V|FAM82A2_uc001zmq.1_Silent_p.V126V	NM_018145	NP_060615	Q96TC7	RMD3_HUMAN	family with sequence similarity 82, member A2	126					apoptosis|cell differentiation	integral to membrane|microtubule|mitochondrial membrane|nucleus|spindle pole	protein binding				0						TTACTCACCGGACCTCCCCAA	0.592													17	36					0	0	0.004990	0	0
RHOV	171177	broad.mit.edu	37	15	41165486	41165486	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:41165486C>T	uc001znd.2	-	3	631	c.481G>A	c.(481-483)GGC>AGC	p.G161S		NM_133639	NP_598378	Q96L33	RHOV_HUMAN	ras homolog gene family, member V	161					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome membrane|plasma membrane	GTP binding|metal ion binding				0		all_cancers(109;1.42e-13)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.58e-05)|COAD - Colon adenocarcinoma(120;0.149)|BRCA - Breast invasive adenocarcinoma(123;0.163)		CCCTCCCGGCCCCCCTGGTCC	0.652													21	39					0	0	0.002299	0	0
VPS18	57617	broad.mit.edu	37	15	41191790	41191790	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:41191790C>T	uc001zne.2	+	4	1113	c.774C>T	c.(772-774)TTC>TTT	p.F258F		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	258					endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		CACCCCCATTCCGTGAGTTTC	0.637													25	59					0	0	0.004656	0	0
VPS18	57617	broad.mit.edu	37	15	41194915	41194915	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:41194915A>T	uc001zne.2	+	5	2637	c.2298A>T	c.(2296-2298)GAA>GAT	p.E766D		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	766	Clathrin.				endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		TGGTGCAGGAAGAGGAAGATG	0.562													6	31					0	0	0.001984	0	0
MGA	23269	broad.mit.edu	37	15	42041639	42041639	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:42041639C>T	uc010ucy.1	+	17	6015	c.5834C>T	c.(5833-5835)GCC>GTC	p.A1945V	MGA_uc010ucz.1_Missense_Mutation_p.A1736V|MGA_uc010uda.1_Missense_Mutation_p.A561V|MGA_uc001zoi.2_Missense_Mutation_p.A159V	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1906	Basic motif.					MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		GGTAGTTTTGCCTTGTTACAG	0.448													7	34					0	0	0.001984	0	0
SPTBN5	51332	broad.mit.edu	37	15	42158681	42158681	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:42158681C>T	uc001zos.2	-	37	6719	c.6386G>A	c.(6385-6387)TGG>TAG	p.W2129*		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2164	Spectrin 18.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		CGCCTGGATCCAGTCCTCAGC	0.632													6	26					0	0	0.001984	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42361047	42361047	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:42361047C>T	uc001zox.2	-	20	2418	c.2323G>A	c.(2323-2325)GAG>AAG	p.E775K		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	775	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		AAGTCTTCCTCCTTGTAGGTC	0.657													8	16					0	0	0.006214	0	0
GANC	2595	broad.mit.edu	37	15	42631902	42631902	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:42631902G>A	uc001zpi.2	+	17	2193	c.1879G>A	c.(1879-1881)GAG>AAG	p.E627K		NM_198141	NP_937784	Q8TET4	GANC_HUMAN	glucosidase, alpha; neutral C	627					carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity			central_nervous_system(2)	2		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		TCCAGAGACAGAGCTGCTAGT	0.542													18	58					0	0	0.007413	0	0
GANC	2595	broad.mit.edu	37	15	42643552	42643552	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:42643552C>T	uc001zpi.2	+	23	2871	c.2557C>T	c.(2557-2559)CCC>TCC	p.P853S	CAPN3_uc001zpk.1_5'UTR|CAPN3_uc001zpl.1_5'UTR|CAPN3_uc010udf.1_5'Flank|CAPN3_uc010udg.1_5'Flank	NM_198141	NP_937784	Q8TET4	GANC_HUMAN	glucosidase, alpha; neutral C	853					carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity			central_nervous_system(2)	2		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		GGGTCATTATCCCAGCAAGTG	0.483													16	32					0	0	0.006122	0	0
UBR1	197131	broad.mit.edu	37	15	43269040	43269040	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:43269040G>A	uc001zqq.2	-	39	4310	c.4244C>T	c.(4243-4245)TCC>TTC	p.S1415F		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1415					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		CCAATACAAGGATGGGAATGC	0.383													6	13					0	0	0.001984	0	0
CATSPER2	117155	broad.mit.edu	37	15	43931848	43931848	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:43931848G>A	uc001zsh.2	-	6	925	c.710C>T	c.(709-711)GCC>GTC	p.A237V	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.A237V|CATSPER2_uc001zsj.2_Missense_Mutation_p.A237V|CATSPER2_uc001zsk.2_3'UTR	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	237	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CACCTTGAGGGCCCTGACCAG	0.413													61	111					0	0	0.003610	0	0
FRMD5	84978	broad.mit.edu	37	15	44181070	44181070	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:44181070C>T	uc001ztl.2	-	9	906	c.729G>A	c.(727-729)TGG>TGA	p.W243*	FRMD5_uc001ztj.1_5'UTR|FRMD5_uc001ztk.1_Nonsense_Mutation_p.W154*|FRMD5_uc001ztm.2_5'UTR|FRMD5_uc001ztn.2_Silent_p.R9R	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	243	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		TCACCTCATTCCTAGAAGCAC	0.483													17	22					0	0	0.006122	0	0
C15orf21	283651	broad.mit.edu	37	15	45848181	45848181	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:45848181G>A	uc010beg.1	+	6		c.1176G>A			C15orf21_uc010beh.1_RNA|C15orf21_uc010bei.1_RNA|C15orf21_uc010bej.1_RNA|C15orf21_uc001zvm.1_RNA|C15orf21_uc001zvn.1_RNA					Homo sapiens cDNA FLJ39426 fis, clone PROST2000505.												0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;3.03e-17)|GBM - Glioblastoma multiforme(94;7.36e-07)		TGTACAGTTTGAAATACTATT	0.318			T	ETV1	prostate								13	18					0	0	0.001855	0	0
MYEF2	50804	broad.mit.edu	37	15	48451901	48451901	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:48451901G>A	uc001zwi.3	-	6	750	c.626C>T	c.(625-627)CCA>CTA	p.P209L	MYEF2_uc001zwj.3_Missense_Mutation_p.P209L|MYEF2_uc001zwl.2_Missense_Mutation_p.P49L	NM_016132	NP_057216	Q9P2K5	MYEF2_HUMAN	myelin expression factor 2	209					transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding|nucleotide binding|RNA binding			lung(2)|ovary(1)	3		all_lung(180;0.00217)		all cancers(107;3.73e-10)|GBM - Glioblastoma multiforme(94;7.81e-07)		TATGGAAGGTGGTAAATTCAT	0.448													17	38					0	0	0.004990	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49327569	49327569	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:49327569G>A	uc001zxe.1	-	3	624	c.490C>T	c.(490-492)CGA>TGA	p.R164*	SECISBP2L_uc001zxd.1_Nonsense_Mutation_p.R164*|SECISBP2L_uc010bep.1_5'UTR|SECISBP2L_uc010beq.1_Nonsense_Mutation_p.R164*	NM_014701	NP_055516	Q93073	SBP2L_HUMAN	SECIS binding protein 2-like	164										breast(1)|skin(1)	2						TTTCTGCTTCGATGGCTGGAC	0.413													12	53					0	0	0.002450	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49327652	49327652	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:49327652G>A	uc001zxe.1	-	3	541	c.407C>T	c.(406-408)GCT>GTT	p.A136V	SECISBP2L_uc001zxd.1_Missense_Mutation_p.A136V|SECISBP2L_uc010bep.1_5'UTR|SECISBP2L_uc010beq.1_Missense_Mutation_p.A136V	NM_014701	NP_055516	Q93073	SBP2L_HUMAN	SECIS binding protein 2-like	136										breast(1)|skin(1)	2						AGTATTTGCAGCCTGAAAGGT	0.458													10	58					0	0	0.008291	0	0
C15orf33	196951	broad.mit.edu	37	15	49663592	49663592	+	Silent	SNP	G	A	A	rs145082626		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:49663592G>A	uc001zxl.2	-	12	1311	c.1017C>T	c.(1015-1017)ATC>ATT	p.I339I		NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	339										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TATTGAAGTCGATACCTAAAA	0.328													14	87					0	0	0.003163	0	0
FGF7	2252	broad.mit.edu	37	15	49775396	49775396	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:49775396G>A	uc001zxn.2	+	3	864	c.335G>A	c.(334-336)GGG>GAG	p.G112E	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	112					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	GCAATCAAAGGGGTGGAAAGT	0.353													13	19					0	0	0.004007	0	0
C15orf33	196951	broad.mit.edu	37	15	49867220	49867220	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:49867220G>A	uc001zxl.2	-	8	927	c.633C>T	c.(631-633)CTC>CTT	p.L211L	C15orf33_uc001zxm.2_Silent_p.L211L	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	211										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TAAATTTATGGAGAAACCACC	0.289													5	34					0	0	0.001168	0	0
TRPM7	54822	broad.mit.edu	37	15	50867312	50867312	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:50867312G>A	uc001zyt.3	-	34	5020	c.4756C>T	c.(4756-4758)CGT>TGT	p.R1586C	TRPM7_uc001zyr.2_Missense_Mutation_p.R23C	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1586	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TCTTCCAAACGATACACTGTG	0.363													12	31					0	0	0.001855	0	0
AP4E1	23431	broad.mit.edu	37	15	51294751	51294751	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:51294751G>A	uc001zyx.1	+	21	3336	c.3306G>A	c.(3304-3306)CTG>CTA	p.L1102L	AP4E1_uc010bex.1_RNA	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	1102					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		CCTGCTTACTGCATTGCCGAG	0.378													45	96					0	0	0.003610	0	0
DMXL2	23312	broad.mit.edu	37	15	51766543	51766543	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:51766543G>A	uc002abf.2	-	28	7433	c.7208C>T	c.(7207-7209)TCA>TTA	p.S2403L	DMXL2_uc002abd.2_Missense_Mutation_p.S474L|DMXL2_uc010ufy.1_Missense_Mutation_p.S2404L|DMXL2_uc010bfa.2_Missense_Mutation_p.S1767L	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2403						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TATCTTACCTGAAATATTTTC	0.328													20	46					0	0	0.010504	0	0
DMXL2	23312	broad.mit.edu	37	15	51795182	51795182	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:51795182C>A	uc002abf.2	-	17	3038	c.2813G>T	c.(2812-2814)GGA>GTA	p.G938V	DMXL2_uc010ufy.1_Missense_Mutation_p.G938V|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	938						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		GTTCTTCTGTCCAGGGACTGA	0.363													10	63					6.40141e-05	7.09332e-05	0.000978	1	0
TMOD3	29766	broad.mit.edu	37	15	52192439	52192439	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:52192439C>T	uc002abm.2	+	8	1042	c.823C>T	c.(823-825)CTG>TTG	p.L275L	TMOD3_uc010bfc.1_RNA	NM_014547	NP_055362	Q9NYL9	TMOD3_HUMAN	tropomodulin 3 (ubiquitous)	275						cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(1)	1				all cancers(107;0.00194)		GATTCTGGCACTGATTGATGC	0.418													13	27					0	0	0.001855	0	0
MYO5C	55930	broad.mit.edu	37	15	52517715	52517715	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:52517715G>A	uc010bff.2	-	26	3359	c.3222C>T	c.(3220-3222)TTC>TTT	p.F1074F	MYO5C_uc010uga.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1074	Potential.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TCTCTTTTTCGAACTCAGAGA	0.368													10	72					0	0	0.006214	0	0
WDR72	256764	broad.mit.edu	37	15	53908079	53908079	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:53908079G>A	uc002acj.2	-	15	2366	c.2324C>T	c.(2323-2325)TCC>TTC	p.S775F	WDR72_uc010bfi.1_Missense_Mutation_p.S775F	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	775										lung(1)|skin(1)	2				all cancers(107;0.0511)		CATTTTTTTGGAGATCTTCAT	0.408													44	61					0	0	0.002852	0	0
RFX7	64864	broad.mit.edu	37	15	56387725	56387725	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:56387725G>A	uc010bfn.2	-	9	2201	c.2201C>T	c.(2200-2202)TCC>TTC	p.S734F	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.S548F	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	637					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						AAGGGCAGAGGAATTCAAGGG	0.413													9	29					0	0	0.006214	0	0
CGNL1	84952	broad.mit.edu	37	15	57835964	57835964	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:57835964C>T	uc002aeg.2	+	15	3438	c.3362C>T	c.(3361-3363)TCC>TTC	p.S1121F	CGNL1_uc010bfw.2_Missense_Mutation_p.S1121F	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	1121	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GACAAGATTTCCCTGGAGAGG	0.567													4	35					0	0	0.001168	0	0
NARG2	79664	broad.mit.edu	37	15	60768358	60768358	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:60768358G>A	uc002agp.2	-	3	285	c.50C>T	c.(49-51)TCC>TTC	p.S17F	NARG2_uc002ago.2_5'UTR|NARG2_uc010bgk.2_Missense_Mutation_p.S17F|NARG2_uc002agr.1_Missense_Mutation_p.S17F	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	17						nucleus				ovary(1)|lung(1)	2						ATTTTTGGGGGAAATATCCCT	0.323													6	15					0	0	0.001168	0	0
TLN2	83660	broad.mit.edu	37	15	63011987	63011987	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:63011987C>T	uc002alb.3	+	22	2899	c.2899C>T	c.(2899-2901)CAG>TAG	p.Q967*		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	967	Ala-rich.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TCACATCCCTCAGCTGGTCCA	0.547													5	18					0	0	0.001168	0	0
DENND4A	10260	broad.mit.edu	37	15	65988768	65988768	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:65988768G>A	uc002aph.2	-	21	3264	c.2886C>T	c.(2884-2886)TCC>TCT	p.S962S	DENND4A_uc002api.2_Silent_p.S1005S|DENND4A_uc002apj.3_Silent_p.S962S	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	962					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GAACGATACTGGAAGAATTTT	0.378													48	19					0	0	0.003610	0	0
IQCH	64799	broad.mit.edu	37	15	67664767	67664767	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:67664767C>T	uc002aqo.1	+	9	1119	c.1072C>T	c.(1072-1074)CTT>TTT	p.L358F	IQCH_uc010ujv.1_Missense_Mutation_p.L177F|IQCH_uc002aqn.1_Missense_Mutation_p.L185F|IQCH_uc002aqq.1_Missense_Mutation_p.L106F|IQCH_uc002aqp.1_Missense_Mutation_p.L110F	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	358										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		GCTGATAAATCTTCCAGGGCA	0.468													30	141					0	0	0.008361	0	0
ITGA11	22801	broad.mit.edu	37	15	68607993	68607993	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:68607993C>T	uc002ari.2	-	22	2875	c.2788G>A	c.(2788-2790)GGC>AGC	p.G930S	ITGA11_uc010bib.2_Missense_Mutation_p.G930S	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	930	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	CCTGACCTGCCTGCAGCGAGC	0.587													5	32					0	0	0.001168	0	0
HCN4	10021	broad.mit.edu	37	15	73635884	73635884	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:73635884G>A	uc002avp.2	-	2	2045	c.1051C>T	c.(1051-1053)CCC>TCC	p.P351S		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	351	Helical; Name=Segment S3; (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		TAGTCCACGGGGATGGAGGAA	0.527													41	44					0	0	0.002852	0	0
GOLGA6A	342096	broad.mit.edu	37	15	74368272	74368272	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:74368272C>T	uc002axa.1	-	8	660	c.619G>A	c.(619-621)GAG>AAG	p.E207K		NM_001038640	NP_001033729	Q9NYA3	GOG6A_HUMAN	golgi autoantigen, golgin subfamily a, 6	207	Potential.										0						AGCGCCCGCTCCTTTATGGTC	0.592													22	251					0	0	0.003954	0	0
CYP11A1	1583	broad.mit.edu	37	15	74630921	74630921	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:74630921G>A	uc002axt.2	-	8	1580	c.1425C>T	c.(1423-1425)TTC>TTT	p.F475F	CYP11A1_uc002axs.2_Silent_p.F317F|CYP11A1_uc010bjm.1_Silent_p.F317F|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Silent_p.F393F	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	475					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CATTGATGAGGAAGATGGTCA	0.567													89	61					0	0	0.003610	0	0
MAN2C1	4123	broad.mit.edu	37	15	75652466	75652466	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:75652466G>T	uc002baf.2	-	14	1688	c.1671C>A	c.(1669-1671)TTC>TTA	p.F557L	MAN2C1_uc002bag.2_Missense_Mutation_p.F557L|MAN2C1_uc002bah.2_Missense_Mutation_p.F557L|MAN2C1_uc010bkk.2_Missense_Mutation_p.F458L|MAN2C1_uc010umi.1_Missense_Mutation_p.F339L	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	557					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						CTGGGTATAGGAACTGGGCAC	0.627													41	213					2.77807e-22	3.11008e-22	0.003214	1	0
SGK269	79834	broad.mit.edu	37	15	77473384	77473384	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:77473384G>A	uc002bcm.2	-	3	1193	c.885C>T	c.(883-885)CCC>CCT	p.P295P	SGK269_uc002bcn.2_Silent_p.P295P	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	295					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TGTTTCGCAGGGGGATGGTAT	0.443													26	123					0	0	0.006320	0	0
SH2D7	646892	broad.mit.edu	37	15	78390783	78390783	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:78390783G>A	uc010blb.1	+	4	490	c.490G>A	c.(490-492)GAC>AAC	p.D164N		NM_001101404	NP_001094874	A6NKC9	SH2D7_HUMAN	SH2 domain containing 7	164											0						GACCATCGTGGACCCAGAAAA	0.617													57	38					0	0	0.003610	0	0
RASGRF1	5923	broad.mit.edu	37	15	79298727	79298727	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:79298727T>A	uc002beq.2	-	15	2290	c.1915A>T	c.(1915-1917)ACC>TCC	p.T639S	RASGRF1_uc002bep.2_Missense_Mutation_p.T626S|RASGRF1_uc010blm.1_Missense_Mutation_p.T548S|RASGRF1_uc002ber.3_Missense_Mutation_p.T626S|RASGRF1_uc010unh.1_Missense_Mutation_p.T34S	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	639					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GAGTTCATGGTTTTGCTGAAG	0.542													24	105					0	0	0.003954	0	0
TMC3	342125	broad.mit.edu	37	15	81627135	81627135	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:81627135C>T	uc002bgo.1	-	21	2385	c.2385G>A	c.(2383-2385)CCG>CCA	p.P795P	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	795	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						CCCCTGGCCTCGGGCTCTGGG	0.592													19	90					0	0	0.008871	0	0
BNC1	646	broad.mit.edu	37	15	83933168	83933168	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:83933168C>T	uc002bjt.1	-	4	923	c.835G>A	c.(835-837)GAA>AAA	p.E279K	BNC1_uc010uos.1_Missense_Mutation_p.E267K	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	279					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CCATGGACTTCCTGTTTGGGG	0.478													84	46					0	0	0.003610	0	0
MRPL46	26589	broad.mit.edu	37	15	89008035	89008035	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:89008035T>C	uc002bmj.2	-	3	513	c.488A>G	c.(487-489)GAG>GGG	p.E163G	MRPL46_uc002bmi.1_Missense_Mutation_p.E41G|MRPL46_uc002bmk.2_Missense_Mutation_p.E162G|MRPS11_uc002bmm.2_5'Flank|MRPS11_uc002bml.2_5'Flank|MRPS11_uc002bmn.2_5'Flank|MRPS11_uc010bnj.2_5'Flank	NM_022163	NP_071446	Q9H2W6	RM46_HUMAN	mitochondrial ribosomal protein L46 precursor	163						mitochondrion|ribosome	hydrolase activity			central_nervous_system(1)	1	Lung NSC(78;0.203)		BRCA - Breast invasive adenocarcinoma(143;0.188)			TCCAAACTTCTCTCTGACTAA	0.527													22	194					0	0	0.002299	0	0
ACAN	176	broad.mit.edu	37	15	89417680	89417680	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:89417680C>T	uc010upo.1	+	18	7935	c.7561C>T	c.(7561-7563)CCT>TCT	p.P2521S	ACAN_uc010upp.1_Missense_Mutation_p.P2422S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2521					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CTCACGGCACCCTCGGAGGAG	0.617													3	15					0	0	0.009096	0	0
FANCI	55215	broad.mit.edu	37	15	89843548	89843548	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:89843548G>A	uc010bnp.1	+	26	2911	c.2821G>A	c.(2821-2823)GGA>AGA	p.G941R	FANCI_uc002bnm.1_Missense_Mutation_p.G881R|FANCI_uc002bnn.1_RNA|FANCI_uc002bnp.1_Missense_Mutation_p.G702R|FANCI_uc002bnq.1_Missense_Mutation_p.G354R	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	941					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					AGATAAGGAAGGAGAAGAGAG	0.408								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				31	35					0	0	0.003271	0	0
UNC45A	55898	broad.mit.edu	37	15	91496169	91496169	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:91496169C>T	uc002bqg.2	+	18	2654	c.2314C>T	c.(2314-2316)CTG>TTG	p.L772L	UNC45A_uc002bqd.2_Silent_p.L757L|UNC45A_uc010uqr.1_Silent_p.L164L|UNC45A_uc002bqi.2_Silent_p.L50L|RCCD1_uc002bqj.2_5'Flank|RCCD1_uc002bqk.2_5'Flank|RCCD1_uc002bql.2_5'Flank	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	772					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GCAGAAGATCCTGAAGGAGAA	0.393													286	245					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	15	91578389	91578389	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:91578389C>T	uc002bqs.1	+	5		c.707C>T								Homo sapiens cDNA FLJ30789 fis, clone FEBRA2000937.																		CATCTTCCTTCCACGTCCCTC	0.577													6	29					0	0	0.001984	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100821477	100821477	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:100821477C>T	uc002bvv.1	-	4	825	c.746G>A	c.(745-747)GGG>GAG	p.G249E	ADAMTS17_uc002bvx.1_Missense_Mutation_p.G6E	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	249	Peptidase M12B.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		GGCCTCGGCCCCGTGGTACTG	0.652													26	93					0	0	0.005443	0	0
LASS3	204219	broad.mit.edu	37	15	101024870	101024870	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:101024870C>T	uc002bvz.2	-	6	794	c.292G>A	c.(292-294)GAT>AAT	p.D98N	LASS3_uc002bwa.2_Missense_Mutation_p.D109N|LASS3_uc002bwb.2_Missense_Mutation_p.D98N	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	98	Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			CCATAAATATCAGTCTGAAAA	0.468													30	24					0	0	0.002836	0	0
TM2D3	80213	broad.mit.edu	37	15	102185351	102185351	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:102185351G>A	uc002bxi.2	-	5	547	c.517C>T	c.(517-519)CCC>TCC	p.P173S	TM2D3_uc010usg.1_Missense_Mutation_p.P147S|TM2D3_uc002bxh.2_Missense_Mutation_p.P108S|TM2D3_uc002bxj.2_Missense_Mutation_p.P147S|TM2D3_uc002bxk.2_Missense_Mutation_p.P108S	NM_078474	NP_510883	Q9BRN9	TM2D3_HUMAN	TM2 domain containing 3 isoform a	173						integral to membrane				ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGCATTTTGGGAAAAGTACGG	0.353													25	11					0	0	0.004656	0	0
TARSL2	123283	broad.mit.edu	37	15	102215839	102215839	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr15:102215839G>A	uc002bxm.2	-	13	1807	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F	TARSL2_uc002bxl.2_Silent_p.F129F|TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	584					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TCTCTCCTAGGAAGTTTTCCG	0.423													73	131					0	0	0.003610	0	0
MRPL28	10573	broad.mit.edu	37	16	418546	418546	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:418546G>A	uc002cgr.1	-	3	547	c.531C>T	c.(529-531)CAC>CAT	p.H177H	MRPL28_uc010bqu.1_Silent_p.H177H|MRPL28_uc002cgs.1_Silent_p.H177H|MRPL28_uc002cgt.1_Silent_p.H177H	NM_006428	NP_006419	Q13084	RM28_HUMAN	mitochondrial ribosomal protein L28 precursor	177					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0		Hepatocellular(16;0.000105)|Lung NSC(18;0.0324)|all_lung(18;0.064)				GGTCCTCGGGGTGCAGCTGGG	0.677													19	31					0	0	0.008871	0	0
NARFL	64428	broad.mit.edu	37	16	789655	789655	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:789655G>A	uc002cjr.2	-	2	162	c.150C>T	c.(148-150)TTC>TTT	p.F50F	NARFL_uc002cjp.2_5'Flank|NARFL_uc002cjq.2_5'UTR|NARFL_uc002cjs.2_5'UTR|NARFL_uc010brc.1_Silent_p.F50F|NARFL_uc010uur.1_Silent_p.F50F	NM_022493	NP_071938	Q9H6Q4	NARFL_HUMAN	nuclear prelamin A recognition factor-like	50					iron-sulfur cluster assembly|oxygen homeostasis|regulation of transcription, DNA-dependent|response to hypoxia		4 iron, 4 sulfur cluster binding|metal ion binding				0		Hepatocellular(780;0.0218)				GGTTAATTTGGAAGTAGCTCC	0.537													40	53					0	0	0.003610	0	0
TELO2	9894	broad.mit.edu	37	16	1557342	1557342	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:1557342C>T	uc002cly.2	+	19	2553	c.2262C>T	c.(2260-2262)TTC>TTT	p.F754F		NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	754						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				TGCTGGAATTCGTGTGGGCCC	0.672													9	17					0	0	0.006214	0	0
PKD1	5310	broad.mit.edu	37	16	2140185	2140185	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:2140185T>C	uc002cos.1	-	46	12664	c.12455A>G	c.(12454-12456)AAA>AGA	p.K4152R	PKD1_uc002cot.1_Missense_Mutation_p.K4151R	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	4152	Cytoplasmic (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AAAGCGGACTTTGTGGCGGAA	0.701													40	35					0	0	0.003214	0	0
TRAF7	84231	broad.mit.edu	37	16	2223226	2223226	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:2223226G>C	uc002cow.2	+	10	937	c.838G>C	c.(838-840)GAG>CAG	p.E280Q		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	280					activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						GACCCACCTGGAGACTTGCCG	0.647													6	9					0	0	0.001984	0	0
E4F1	1877	broad.mit.edu	37	16	2284185	2284185	+	Silent	SNP	C	T	T	rs113270919		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:2284185C>T	uc002cpm.2	+	10	1437	c.1389C>T	c.(1387-1389)TTC>TTT	p.F463F	E4F1_uc010bsi.2_Silent_p.F463F|E4F1_uc010bsj.2_Intron|DNASE1L2_uc002cpn.2_5'Flank|DNASE1L2_uc002cpo.2_5'Flank|DNASE1L2_uc002cpp.2_5'Flank|DNASE1L2_uc002cpq.2_5'Flank	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	463	Mediates interaction with CDKN2A.|C2H2-type 5.|Interaction with BMI1.				cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						CGAGGCCGTTCGCCTGCGCGC	0.706													11	13					0	0	0.000978	0	0
IL32	9235	broad.mit.edu	37	16	3119352	3119352	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:3119352A>T	uc002cto.2	+	6	912	c.701A>T	c.(700-702)AAA>ATA	p.K234I	IL32_uc002ctk.2_Missense_Mutation_p.K131I|IL32_uc010uwp.1_Missense_Mutation_p.K168I|IL32_uc010btb.2_Missense_Mutation_p.K178I|IL32_uc002ctl.2_Missense_Mutation_p.K188I|IL32_uc002ctm.2_Missense_Mutation_p.K188I|IL32_uc002ctn.2_Missense_Mutation_p.K188I|IL32_uc002cts.3_Missense_Mutation_p.K188I|IL32_uc002ctp.2_Missense_Mutation_p.K168I|IL32_uc002ctq.2_Missense_Mutation_p.K234I|IL32_uc002ctr.2_Missense_Mutation_p.K168I|IL32_uc002ctt.2_Missense_Mutation_p.K188I|IL32_uc010uwr.1_Missense_Mutation_p.K148I|IL32_uc002ctu.2_Missense_Mutation_p.K179I	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	234					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						CAATCCTCAAAATGAAGATAC	0.612													44	94					0	0	0.003214	0	0
OR2C1	4993	broad.mit.edu	37	16	3406744	3406744	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:3406744G>A	uc002cuw.1	+	1	856	c.804G>A	c.(802-804)CAG>CAA	p.Q268Q		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACAGCAAACAGGACCAGGGCA	0.537													27	29					0	0	0.009535	0	0
TFAP4	7023	broad.mit.edu	37	16	4310097	4310097	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:4310097G>A	uc010uxg.1	-	6	1070	c.816C>T	c.(814-816)ATC>ATT	p.I272I		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	272					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						GTACCTGCACGATGGTGTCCA	0.582													31	36					0	0	0.003755	0	0
ROGDI	79641	broad.mit.edu	37	16	4847783	4847783	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:4847783G>A	uc002cxv.2	-	10	856	c.754C>T	c.(754-756)CCC>TCC	p.P252S	ROGDI_uc002cxu.2_Missense_Mutation_p.P162S|ROGDI_uc010bua.2_RNA|ROGDI_uc002cxw.2_Missense_Mutation_p.P162S	NM_024589	NP_078865	Q9GZN7	ROGDI_HUMAN	leucine zipper domain protein	252						intracellular				ovary(1)|skin(1)	2						TTGAGCCAGGGGATCACGCAC	0.662													26	51					0	0	0.005443	0	0
ABAT	18	broad.mit.edu	37	16	8862722	8862722	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:8862722C>T	uc002czc.3	+	11	874	c.708C>T	c.(706-708)ATC>ATT	p.I236I	ABAT_uc002czd.3_Silent_p.I236I|ABAT_uc010buh.2_Silent_p.I178I|ABAT_uc010bui.2_Silent_p.I236I	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	236					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	TTCACAAGATCGACATCCCTT	0.532													76	94					0	0	0.003610	0	0
ABCC6	368	broad.mit.edu	37	16	16267203	16267203	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:16267203G>A	uc002den.3	-	21	2762	c.2725C>T	c.(2725-2727)CCT>TCT	p.P909S	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	909	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TCATCCAGAGGAACCTCTGTC	0.552													26	30					0	0	0.004656	0	0
XYLT1	64131	broad.mit.edu	37	16	17221565	17221565	+	Silent	SNP	G	A	A	rs112238716		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:17221565G>A	uc002dfa.2	-	10	2266	c.2181C>T	c.(2179-2181)ATC>ATT	p.I727I		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	727	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GTGGGCTTGCGATCTTGAAGA	0.493													69	64					0	0	0.003610	0	0
TMC7	79905	broad.mit.edu	37	16	19041653	19041653	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:19041653C>T	uc002dfq.2	+	6	949	c.819C>T	c.(817-819)ATC>ATT	p.I273I	TMC7_uc010vao.1_Silent_p.I273I|TMC7_uc002dfp.2_Silent_p.I273I|TMC7_uc010vap.1_Silent_p.I163I	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	273	Helical; (Potential).					integral to membrane				skin(2)|ovary(1)	3						TAAGCACAATCGCCTCCCTGG	0.463													23	28					0	0	0.002299	0	0
TMC7	79905	broad.mit.edu	37	16	19067872	19067872	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:19067872C>T	uc002dfq.2	+	14	2010	c.1880C>T	c.(1879-1881)TCC>TTC	p.S627F	TMC7_uc002dfp.2_Missense_Mutation_p.S627F|TMC7_uc010vap.1_Missense_Mutation_p.S517F	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	627	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						AGCATCCCTTCCTCGAAAGCC	0.572													25	28					0	0	0.004656	0	0
SYT17	51760	broad.mit.edu	37	16	19278375	19278375	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:19278375C>T	uc002dfw.2	+	8	1733	c.1402C>T	c.(1402-1404)CCT>TCT	p.P468S	SYT17_uc002dfx.2_Missense_Mutation_p.P407S|SYT17_uc002dfy.2_Missense_Mutation_p.P464S	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	468						membrane|synaptic vesicle	transporter activity			ovary(1)	1						CCGCGTGTCTCCTGCCTCCCT	0.517													7	7					0	0	0.004482	0	0
DNAH3	55567	broad.mit.edu	37	16	20944721	20944721	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:20944721C>T	uc010vbe.1	-	62	12106	c.12106G>A	c.(12106-12108)GAA>AAA	p.E4036K	DNAH3_uc010vbd.1_Missense_Mutation_p.E1471K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	4036					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GGGAGAGATTCCCCAATCTGC	0.498													35	46					0	0	0.004878	0	0
DNAH3	55567	broad.mit.edu	37	16	20975497	20975497	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:20975497C>T	uc010vbe.1	-	53	9709	c.9709G>A	c.(9709-9711)GAA>AAA	p.E3237K	DNAH3_uc010vbd.1_Missense_Mutation_p.E672K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3237	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCTTCAATTTCCTTGAGATGC	0.468													49	60					0	0	0.003610	0	0
NCRNA00169	400508	broad.mit.edu	37	16	21328395	21328395	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:21328395G>A	uc010bwr.1	+	3		c.787G>A				NR_026675				Homo sapiens cDNA FLJ41766 fis, clone IMR322006222.											central_nervous_system(1)	1						GAAGTACTGTGGTTCAGGGTA	0.373													45	50					0	0	0.009718	0	0
ATXN2L	11273	broad.mit.edu	37	16	28847424	28847424	+	Silent	SNP	C	T	T	rs1140135		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:28847424C>T	uc002drc.2	+	22	3234	c.3066C>T	c.(3064-3066)CCC>CCT	p.P1022P	uc010vct.1_Intron|ATXN2L_uc002drb.2_Silent_p.P1022P|ATXN2L_uc002dqy.2_Silent_p.P1022P|ATXN2L_uc002dra.2_Silent_p.P1022P|ATXN2L_uc002dqz.2_Silent_p.P1022P|ATXN2L_uc010vdb.1_Silent_p.P1028P|ATXN2L_uc002dre.2_Silent_p.P1022P|ATXN2L_uc002drf.2_Silent_p.P431P|ATXN2L_uc002drg.2_Silent_p.P305P	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	1022						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CACCCTACCCCTACATCGGAC	0.637													23	33					0	0	0.002780	0	0
TAOK2	9344	broad.mit.edu	37	16	29996834	29996834	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:29996834G>A	uc002dva.1	+	14	2506	c.1723G>A	c.(1723-1725)GAG>AAG	p.E575K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Missense_Mutation_p.E575K|TAOK2_uc002dvc.1_Missense_Mutation_p.E575K|TAOK2_uc010bzm.1_Missense_Mutation_p.E582K|TAOK2_uc002dvd.1_Missense_Mutation_p.E402K	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	575	Potential.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GCAGAAGAAGGAGCTGGCTGC	0.647													5	15					0	0	0.000602	0	0
TAOK2	9344	broad.mit.edu	37	16	29998174	29998174	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:29998174A>T	uc002dva.1	+	16	3364	c.2581A>T	c.(2581-2583)ATT>TTT	p.I861F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.I868F|TAOK2_uc002dvd.1_Missense_Mutation_p.I688F	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	861	Glu-rich.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GGAGAGGAGCATTGTTGGCCA	0.577													11	21					0	0	0.000978	0	0
ZNF646	9726	broad.mit.edu	37	16	31088662	31088662	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:31088662G>A	uc002eap.2	+	2	1306	c.1017G>A	c.(1015-1017)GAG>GAA	p.E339E		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	339					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						ACACAGATGAGAGCAGCCAGG	0.632													7	7					0	0	0.001984	0	0
ITGAD	3681	broad.mit.edu	37	16	31434754	31434754	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:31434754G>A	uc002ebv.1	+	25	2990	c.2941G>A	c.(2941-2943)GAT>AAT	p.D981N	ITGAD_uc010cap.1_Missense_Mutation_p.D982N	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	981	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GGCTGTGTGGGATGTGGTCAT	0.547													31	34					0	0	0.002096	0	0
Unknown	0	broad.mit.edu	37	16	32077573	32077573	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:32077573C>T	uc010vfu.1	+	1		c.15C>T								Homo sapiens mRNA for immunoglobulin heavy chain, VHDJH rearrangement : VHLI26.																		TACGCAGACTCTGTGAAAGGC	0.517													59	227					0	0	0.003610	0	0
ZNF423	23090	broad.mit.edu	37	16	49670894	49670894	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:49670894G>A	uc002efs.2	-	5	2467	c.2169C>T	c.(2167-2169)ACC>ACT	p.T723T	ZNF423_uc010vgn.1_Silent_p.T606T	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	723	C2H2-type 17.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CCTGACACAGGGTGCAGTGGT	0.557													19	23					0	0	0.007413	0	0
SALL1	6299	broad.mit.edu	37	16	51175596	51175596	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:51175596G>A	uc010vgs.1	-	2	568	c.537C>T	c.(535-537)CTC>CTT	p.L179L	SALL1_uc010vgr.1_Silent_p.L82L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	179					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TCAGGTCCCCGAGTTGAGGTA	0.448													19	26					0	0	0.010504	0	0
SLC6A2	6530	broad.mit.edu	37	16	55706064	55706064	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:55706064C>T	uc002eif.2	+	4	732	c.621C>T	c.(619-621)TTC>TTT	p.F207F	SLC6A2_uc010ccd.2_Silent_p.F207F|SLC6A2_uc002eig.2_Silent_p.F207F|SLC6A2_uc002eih.2_Silent_p.F207F|SLC6A2_uc002eii.2_Silent_p.F102F	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	207	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	AGTACAAGTTCACGCCGGCAG	0.557													15	22					0	0	0.004990	0	0
MT1A	4489	broad.mit.edu	37	16	56673228	56673228	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:56673228C>T	uc002ejq.2	+	2	154	c.81C>T	c.(79-81)ACC>ACT	p.T27T	MT1A_uc002eji.2_Intron	NM_005946	NP_005937	P04731	MT1A_HUMAN	metallothionein 1A	27	Beta.					cytoplasm	cadmium ion binding|copper ion binding|zinc ion binding				0						GCAAATGCACCTCCTGCAAGA	0.527													13	19					0	0	0.004990	0	0
CNGB1	1258	broad.mit.edu	37	16	57935322	57935322	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:57935322C>T	uc002emt.2	-	29	2975	c.2910G>A	c.(2908-2910)ATG>ATA	p.M970I	CNGB1_uc010cdh.2_Missense_Mutation_p.M964I	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	970	Helical; Name=H6; (Potential).|cAMP (By similarity).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						TGTCAAAGATCATCTGCCGGT	0.572													34	34					0	0	0.003271	0	0
HYDIN	54768	broad.mit.edu	37	16	71025992	71025992	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:71025992C>T	uc002ezr.2	-	24	3894	c.3766G>A	c.(3766-3768)GAT>AAT	p.D1256N		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1256										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TCATTTAAATCCATCTCGGGG	0.458													15	18					0	0	0.002299	0	0
CLEC18B	497190	broad.mit.edu	37	16	74443494	74443494	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:74443494C>T	uc002fct.2	-	12	1484	c.1284G>A	c.(1282-1284)TGG>TGA	p.W428*	CLEC18B_uc002fcu.2_Nonsense_Mutation_p.W419*	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B	428	C-type lectin.					extracellular region	sugar binding				0						GCTGGTCGTTCCAGTTGAAGG	0.597													12	57					0	0	0.008871	0	0
WDR59	79726	broad.mit.edu	37	16	74990485	74990485	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:74990485T>C	uc002fdh.1	-	3	230	c.128A>G	c.(127-129)AAT>AGT	p.N43S	WDR59_uc002fdi.2_Missense_Mutation_p.N43S|WDR59_uc002fdj.2_Missense_Mutation_p.N43S	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	43										ovary(1)|breast(1)	2						GGCATCTAGATTGACGATGTA	0.408													12	19					0	0	0.001368	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76569505	76569505	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:76569505T>A	uc002feu.1	+	20	3204	c.2819T>A	c.(2818-2820)ATG>AAG	p.M940K	CNTNAP4_uc002fev.1_Missense_Mutation_p.M804K|CNTNAP4_uc010chb.1_Missense_Mutation_p.M867K|CNTNAP4_uc002fex.1_Missense_Mutation_p.M943K	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	940	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TTGAATGGGATGACCCTGGAT	0.517													25	29					0	0	0.006320	0	0
MON1B	22879	broad.mit.edu	37	16	77228850	77228850	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:77228850C>T	uc002fez.2	+	4	1424	c.1094C>T	c.(1093-1095)GCC>GTC	p.A365V	MON1B_uc010vnf.1_Missense_Mutation_p.A256V|MON1B_uc010vng.1_Missense_Mutation_p.A219V|MON1B_uc002ffa.2_Missense_Mutation_p.A245V	NM_014940	NP_055755	Q7L1V2	MON1B_HUMAN	MON1 homolog B	365							protein binding				0						GCCATGGCCGCCTGCCGGCGC	0.612													8	21					0	0	0.003080	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77465339	77465339	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:77465339C>T	uc002ffc.3	-	3	767	c.348G>A	c.(346-348)GCG>GCA	p.A116A	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	116					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGCTCAAAATCGCCGAGGGCT	0.483													68	54					0	0	0.003610	0	0
PKD1L2	114780	broad.mit.edu	37	16	81241209	81241209	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:81241209G>A	uc002fgh.1	-	5	792	c.792C>T	c.(790-792)TTC>TTT	p.F264F	PKD1L2_uc002fgj.2_Silent_p.F264F	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	264	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGTCAAAGATGAAACTCTCAC	0.438													34	67					0	0	0.004878	0	0
PLCG2	5336	broad.mit.edu	37	16	81944272	81944272	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:81944272C>T	uc002fgt.2	+	18	2033	c.1881C>T	c.(1879-1881)TTC>TTT	p.F627F	PLCG2_uc010chg.1_Silent_p.F627F	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	627	SH2 1.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GCGCCGAGTTCGAGCTGCGGC	0.632													52	56					0	0	0.003610	0	0
PLCG2	5336	broad.mit.edu	37	16	81960742	81960742	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:81960742G>A	uc002fgt.2	+	23	2625	c.2473G>A	c.(2473-2475)GAG>AAG	p.E825K		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	825	SH3.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						CAACTACGTCGAGGACATCTC	0.522													59	66					0	0	0.003610	0	0
SDR42E1	93517	broad.mit.edu	37	16	82032955	82032955	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:82032955C>T	uc002fgu.2	-	3	1071	c.943G>A	c.(943-945)GAA>AAA	p.E315K		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	315					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						TTGTAAACTTCAGTGCGAGTG	0.448													19	16					0	0	0.008871	0	0
CBFA2T3	863	broad.mit.edu	37	16	88947895	88947895	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr16:88947895G>A	uc002fmm.1	-	9	1392	c.1206C>T	c.(1204-1206)CTC>CTT	p.L402L	CBFA2T3_uc002fml.1_Silent_p.L316L|CBFA2T3_uc010cif.1_Silent_p.L341L|CBFA2T3_uc002fmk.1_5'Flank	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	402	Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		TGCAGTTCAGGAGCTGGGGGC	0.701			T	RUNX1	AML								12	10					0	0	0.001855	0	0
C17orf97	400566	broad.mit.edu	37	17	263022	263022	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:263022C>T	uc002frh.2	+	2	404	c.388C>T	c.(388-390)CCG>TCG	p.P130S	C17orf97_uc010vpz.1_5'Flank	NM_001013672	NP_001013694	Q6ZQX7	CQ097_HUMAN	hypothetical protein LOC400566	130										ovary(1)	1						AGAGCGTGGCCCGAAACCAGA	0.517													21	40					0	0	0.001882	0	0
SLC43A2	124935	broad.mit.edu	37	17	1478958	1478958	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:1478958C>T	uc002fsv.2	-	14	1739	c.1650G>A	c.(1648-1650)CAG>CAA	p.Q550Q	SLC43A2_uc002fsu.2_Silent_p.Q554Q	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	550					cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)		TGTCATCCTCCTGCCTCTGCT	0.622													10	12					0	0	0.008291	0	0
WDR81	124997	broad.mit.edu	37	17	1637434	1637434	+	Silent	SNP	C	T	T	rs150462855	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:1637434C>T	uc002fti.2	+	7	1683	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F	WDR81_uc002fth.2_Silent_p.F650F|WDR81_uc010vqp.1_Silent_p.F498F|WDR81_uc002ftj.2_Silent_p.F1701F|WDR81_uc010vqq.1_Silent_p.F332F	NM_001163811	NP_001157283	Q562E7	WDR81_HUMAN	WD repeat domain 81 isoform 4	474										skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		AGAGCGTCTTCTTCGTGGGCC	0.677													19	17					0	0	0.010504	0	0
SMYD4	114826	broad.mit.edu	37	17	1715306	1715306	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:1715306G>A	uc002ftm.3	-	3	406	c.238C>T	c.(238-240)CAG>TAG	p.Q80*		NM_052928	NP_443160	Q8IYR2	SMYD4_HUMAN	SET and MYND domain containing 4	80							zinc ion binding			skin(3)|kidney(2)	5						TCTTTCTCCTGAAATTTTTTG	0.348													53	84					0	0	0.003610	0	0
METT10D	79066	broad.mit.edu	37	17	2323266	2323266	+	Nonstop_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:2323266A>T	uc002fut.2	-	10	1835	c.1687T>A	c.(1687-1689)TAG>AAG	p.*563K	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_RNA|METT10D_uc002fuv.2_Intron|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_Nonstop_Mutation_p.*345K	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	563							methyltransferase activity				0						GGAGGTTTCTAGTTAACTGCA	0.493													17	32					0	0	0.007413	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2901625	2901625	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:2901625C>T	uc010ckd.2	+	14	1245	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I	RAP1GAP2_uc010cke.2_Silent_p.I370I	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	385	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						ATGCCTACATCGTCGTGCAGG	0.532													9	64					0	0	0.004482	0	0
OR1A1	8383	broad.mit.edu	37	17	3118978	3118978	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:3118978G>A	uc010vrc.1	+	1	64	c.64G>A	c.(64-66)GAA>AAA	p.E22K		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGTCAGCAGGAACAGGAAGA	0.438													32	45					0	0	0.002445	0	0
ZZEF1	23140	broad.mit.edu	37	17	3977624	3977624	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:3977624G>A	uc002fxe.2	-	24	3569	c.3505C>T	c.(3505-3507)CCT>TCT	p.P1169S		NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1169							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGCAACCGAGGACCGGCCTTG	0.502											OREG0024096	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	45	92					0	0	0.003214	0	0
DERL2	51009	broad.mit.edu	37	17	5383830	5383831	+	Nonsense_Mutation	DNP	GG	AA	AA	rs148853119	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:5383830_5383831GG>AA	uc002gcc.1	-	5	415_416	c.399_400CC>TT	c.(397-402)AGCCGA>AGTTGA	p.R134*		NM_016041	NP_057125	Q9GZP9	DERL2_HUMAN	Der1-like domain family, member 2	134	Cytoplasmic (Potential).				endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of cell growth|positive regulation of cell proliferation|retrograde protein transport, ER to cytosol	integral to endoplasmic reticulum membrane	protein binding				0						GGGTTCCTTCGGCTCCACACAT	0.48													28	136					0	0	0.004672	0	0
BCL6B	255877	broad.mit.edu	37	17	6930094	6930095	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:6930094_6930095CC>TT	uc002geg.2	+	7	1182_1183	c.1125_1126CC>TT	c.(1123-1128)AGCCGC>AGTTGC	p.R376C	BCL6B_uc010clt.1_Missense_Mutation_p.R377C	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	376	C2H2-type 2.					nucleus	zinc ion binding			skin(1)	1						AAACGCACAGCCGCATCCATTC	0.569													40	49					0	0	0.004672	0	0
DULLARD	23399	broad.mit.edu	37	17	7150120	7150120	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:7150120A>C	uc002gfd.2	-	4	730	c.350T>G	c.(349-351)TTC>TGC	p.F117C	DULLARD_uc002gfe.2_Missense_Mutation_p.F117C|DULLARD_uc002gff.2_Missense_Mutation_p.F117C|DULLARD_uc002gfc.2_RNA	NM_001143775	NP_001137247	O95476	CNEP1_HUMAN	dullard homolog	117	FCP1 homology.				nuclear envelope organization|protein dephosphorylation	endoplasmic reticulum membrane|integral to membrane|nuclear membrane	protein serine/threonine phosphatase activity				0						CACTTCCAGGAAGAAATCCAC	0.483													55	189					0	0	0.003610	0	0
EFNB3	1949	broad.mit.edu	37	17	7608921	7608921	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:7608921G>A	uc002gis.2	+	1	402	c.5G>A	c.(4-6)GGG>GAG	p.G2E		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	2					cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				GGGGTCATGGGGCCCCCCCAT	0.731													3	9					0	0	0.004672	0	0
DNAH2	146754	broad.mit.edu	37	17	7702555	7702555	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:7702555C>T	uc002giu.1	+	55	8708	c.8694C>T	c.(8692-8694)CCC>CCT	p.P2898P		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2898	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGGGGGATCCCTTCAGGTGAC	0.562													9	45					0	0	0.006214	0	0
CHD3	1107	broad.mit.edu	37	17	7797852	7797852	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:7797852C>T	uc002gje.2	+	8	1345	c.1195C>T	c.(1195-1197)CGT>TGT	p.R399C	CHD3_uc002gjd.2_Missense_Mutation_p.R458C|CHD3_uc002gjf.2_Missense_Mutation_p.R399C|CHD3_uc002gjg.1_Missense_Mutation_p.R227C	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	399	PHD-type 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CACCTGCCCTCGTGCCTACCA	0.577													15	58					0	0	0.004007	0	0
GUCY2D	3000	broad.mit.edu	37	17	7915790	7915790	+	Missense_Mutation	SNP	G	A	A	rs61750162		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:7915790G>A	uc002gjt.2	+	10	2053	c.1979G>A	c.(1978-1980)CGA>CAA	p.R660Q		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	660	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				CTGCACCATCGAGGCGTGGCT	0.587													19	81					0	0	0.007413	0	0
PIK3R5	23533	broad.mit.edu	37	17	8790920	8790920	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:8790920C>T	uc002glt.2	-	11	1764	c.1697G>A	c.(1696-1698)GGG>GAG	p.G566E	PIK3R5_uc010vuz.1_Missense_Mutation_p.G566E|PIK3R5_uc002glu.3_Missense_Mutation_p.G180E	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	566					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						AGGGCTGGTCCCATGACTTCG	0.617													12	8					0	0	0.001855	0	0
DHRS7C	201140	broad.mit.edu	37	17	9683345	9683345	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:9683345G>A	uc010vvb.1	-	3	278	c.278C>T	c.(277-279)ACC>ATC	p.T93I	DHRS7C_uc010cof.2_Missense_Mutation_p.T92I	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	93						extracellular region	binding|oxidoreductase activity				0						CAGCTTTGGGGTGAATGTCTG	0.507													8	12					0	0	0.006214	0	0
MYH13	8735	broad.mit.edu	37	17	10212617	10212617	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10212617C>T	uc002gmk.1	-	35	5193	c.5103G>A	c.(5101-5103)CGG>CGA	p.R1701R		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1701	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCCTGCGGGTCCGCTCCGTCT	0.657													15	16					0	0	0.007413	0	0
MYH13	8735	broad.mit.edu	37	17	10231253	10231253	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10231253C>T	uc002gmk.1	-	22	2711	c.2621G>A	c.(2620-2622)CGG>CAG	p.R874Q		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	874	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CAGCTCCTTCCGGCGAGCCTC	0.537											OREG0024177	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	32					0	0	0.002299	0	0
MYH13	8735	broad.mit.edu	37	17	10233724	10233724	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10233724G>A	uc002gmk.1	-	21	2505	c.2415C>T	c.(2413-2415)TTC>TTT	p.F805F		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	805	IQ.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCATCTTCTTGAACTCCACCC	0.552													5	22					0	0	0.001168	0	0
MYH13	8735	broad.mit.edu	37	17	10253951	10253951	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10253951C>T	uc002gmk.1	-	12	1156	c.1066G>A	c.(1066-1068)GGA>AGA	p.G356R	MYH13_uc010vvf.1_Missense_Mutation_p.G31R	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	356	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						ATCACGGCTCCCGTCAGTTTG	0.512													11	67					0	0	0.000978	0	0
MYH8	4626	broad.mit.edu	37	17	10297626	10297626	+	Silent	SNP	C	T	T	rs140525529		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10297626C>T	uc002gmm.2	-	35	5201	c.5106G>A	c.(5104-5106)AGG>AGA	p.R1702R	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1702	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle	p.R1702R(1)		skin(6)|ovary(3)|breast(2)	11						CGGCGATTTTCCTGCTTCTCT	0.567									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				28	45					0	0	0.009535	0	0
MYH1	4619	broad.mit.edu	37	17	10398572	10398572	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10398572C>T	uc002gmo.2	-	36	5326	c.5232G>A	c.(5230-5232)GAG>GAA	p.E1744E	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1744	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGTCTTCCATCTCTCCCTGGA	0.443													54	70					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10400388	10400388	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10400388C>T	uc002gmo.2	-	33	4748	c.4654G>A	c.(4654-4656)GAG>AAG	p.E1552K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1552	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATGCTTACCTCTGCCTCCTCT	0.368													6	39					0	0	0.003080	0	0
MYH1	4619	broad.mit.edu	37	17	10400472	10400472	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10400472C>T	uc002gmo.2	-	33	4664	c.4570G>A	c.(4570-4572)GGA>AGA	p.G1524R	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1524	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATGCGCTTTCCTCCTTCTGCA	0.363													8	22					0	0	0.004482	0	0
MYH1	4619	broad.mit.edu	37	17	10401102	10401102	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10401102C>T	uc002gmo.2	-	31	4408	c.4314G>A	c.(4312-4314)AGG>AGA	p.R1438R	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1438	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CAGCATTTGTCCTCTCAACAT	0.433													22	42					0	0	0.001882	0	0
MYH2	4620	broad.mit.edu	37	17	10441041	10441041	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10441041C>T	uc010coi.2	-	15	1656	c.1528G>A	c.(1528-1530)GAG>AAG	p.E510K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E510K|MYH2_uc010coj.2_Missense_Mutation_p.E510K	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	510	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AACGTCCACTCGATGCCTTCC	0.493													41	62					0	0	0.008740	0	0
MYH2	4620	broad.mit.edu	37	17	10443353	10443353	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10443353C>T	uc010coi.2	-	12	1167	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E347K|MYH2_uc010coj.2_Missense_Mutation_p.E347K	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	347	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACCTTTTCTTCATTAGTAAAG	0.423													16	71					0	0	0.004990	0	0
MYH3	4621	broad.mit.edu	37	17	10532961	10532961	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:10532961G>A	uc002gmq.1	-	39	5826	c.5749C>T	c.(5749-5751)CAA>TAA	p.Q1917*		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1917	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TTGTTGACTTGAGATTCTGCG	0.542													38	29					0	0	0.008740	0	0
DNAH9	1770	broad.mit.edu	37	17	11593480	11593480	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:11593480G>A	uc002gne.2	+	20	4409	c.4341G>A	c.(4339-4341)ATG>ATA	p.M1447I	DNAH9_uc010coo.2_Missense_Mutation_p.M741I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1447	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGGCTGGCATGGAATTCCAGT	0.512													8	40					0	0	0.006214	0	0
DNAH9	1770	broad.mit.edu	37	17	11671833	11671833	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:11671833C>T	uc002gne.2	+	37	7302	c.7234C>T	c.(7234-7236)CCT>TCT	p.P2412S	DNAH9_uc010coo.2_Missense_Mutation_p.P1706S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2412					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGTCAAGTTTCCTTCCCAAGG	0.498													21	42					0	0	0.008871	0	0
DNAH9	1770	broad.mit.edu	37	17	11726147	11726147	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:11726147C>T	uc002gne.2	+	48	9110	c.9042C>T	c.(9040-9042)TTC>TTT	p.F3014F	DNAH9_uc010coo.2_Silent_p.F2308F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3014	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTAGCAAATTCATGGCCTTTG	0.433													28	52					0	0	0.002096	0	0
DNAH9	1770	broad.mit.edu	37	17	11827196	11827196	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:11827196G>A	uc002gne.2	+	62	11883	c.11815G>A	c.(11815-11817)GAA>AAA	p.E3939K	DNAH9_uc010coo.2_Missense_Mutation_p.E3233K|DNAH9_uc002gnf.2_Missense_Mutation_p.E251K|DNAH9_uc010vvh.1_Missense_Mutation_p.E292K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3939	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCAAGGACAGGAAGTGGTGGC	0.473													8	49					0	0	0.004482	0	0
MYOCD	93649	broad.mit.edu	37	17	12666456	12666456	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:12666456C>T	uc002gnn.2	+	13	2611	c.2312C>T	c.(2311-2313)TCC>TTC	p.S771F	MYOCD_uc002gno.2_Missense_Mutation_p.S819F|MYOCD_uc002gnq.2_Missense_Mutation_p.S495F	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	771					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CCCAGATCTTCCCGAAGTCCA	0.498													16	89					0	0	0.004990	0	0
NCOR1	9611	broad.mit.edu	37	17	16068451	16068451	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:16068451C>T	uc002gpo.2	-	5	700	c.460G>A	c.(460-462)GAA>AAA	p.E154K	NCOR1_uc002gpn.2_Missense_Mutation_p.E154K|NCOR1_uc002gpp.1_Missense_Mutation_p.E45K|NCOR1_uc002gpr.2_Missense_Mutation_p.E45K|NCOR1_uc002gps.1_Missense_Mutation_p.E154K|NCOR1_uc010coz.1_5'UTR|NCOR1_uc010cpb.1_Missense_Mutation_p.E154K|NCOR1_uc010cpa.1_Missense_Mutation_p.E154K|NCOR1_uc002gpu.2_Missense_Mutation_p.E154K	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	154	Interaction with ZBTB33 and HEXIM1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GATGGAGCTTCATGTTTGCCT	0.388													18	162					0	0	0.002299	0	0
PEMT	10400	broad.mit.edu	37	17	17425608	17425608	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:17425608G>A	uc002grj.2	-	3	262	c.195C>T	c.(193-195)TTC>TTT	p.F65F	PEMT_uc002grk.2_Silent_p.F65F|PEMT_uc002grl.2_Silent_p.F102F|PEMT_uc010vwx.1_Silent_p.F102F	NM_148173	NP_680478	Q9UBM1	PEMT_HUMAN	phosphatidylethanolamine N-methyltransferase	65	Helical; (Potential).				cell proliferation|phosphatidylcholine biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial membrane	phosphatidylethanolamine N-methyltransferase activity				0				Colorectal(2;0.0157)|READ - Rectum adenocarcinoma(2;0.0891)		GCGAGCGCAGGAAGTTCAGGA	0.622													5	26					0	0	0.001168	0	0
TOM1L2	146691	broad.mit.edu	37	17	17751084	17751084	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:17751084G>A	uc002grz.3	-	15	1546	c.1389C>T	c.(1387-1389)TTC>TTT	p.F463F	TOM1L2_uc002gry.3_Silent_p.F413F|TOM1L2_uc010vwy.1_Silent_p.F439F|TOM1L2_uc010cpr.2_Silent_p.F418F|TOM1L2_uc010vwz.1_Silent_p.F344F|TOM1L2_uc010vxa.1_Silent_p.F345F|TOM1L2_uc002grv.3_Silent_p.F196F	NM_001082968	NP_001076437	Q6ZVM7	TM1L2_HUMAN	target of myb1-like 2 isoform 3	463					intracellular protein transport	intracellular					0	all_neural(463;0.228)					TTTCTTCAAGGAATTTATCAA	0.582													35	45					0	0	0.006999	0	0
MYO15A	51168	broad.mit.edu	37	17	18034824	18034824	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:18034824G>A	uc010vxh.1	+	9	4523	c.4185G>A	c.(4183-4185)GAG>GAA	p.E1395E		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1395	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					ACCTGCTTGAGAAATCCAGGA	0.627													12	16					0	0	0.001855	0	0
LLGL1	3996	broad.mit.edu	37	17	18138301	18138301	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:18138301G>A	uc002gsp.2	+	9	1115	c.1054G>A	c.(1054-1056)GAG>AAG	p.E352K		NM_004140	NP_004131	Q15334	L2GL1_HUMAN	lethal giant larvae homolog 1	352	WD 7.				cortical actin cytoskeleton organization|exocytosis|protein complex assembly	cortical actin cytoskeleton	protein kinase binding|structural molecule activity			breast(2)|skin(2)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)	6	all_neural(463;0.228)					CACACGGCCCGAGGATGGTGC	0.612													8	14					0	0	0.004482	0	0
FLII	2314	broad.mit.edu	37	17	18156662	18156662	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:18156662G>A	uc002gsr.1	-	9	1017	c.966C>T	c.(964-966)TTC>TTT	p.F322F	FLII_uc002gsq.1_Silent_p.F194F|FLII_uc010cpy.1_Silent_p.F311F|FLII_uc010vxn.1_Silent_p.F291F|FLII_uc010vxo.1_Silent_p.F268F|FLII_uc002gss.1_Silent_p.F322F	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	322	LRR 14.|Interaction with LRRFIP1 and LRRFIP2.				multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					TGGCAGCCATGAACTCTTCCA	0.577													9	32					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	17	20747245	20747245	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:20747245C>T	uc010crb.1	+	2		c.633C>T								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		CGACGCCTTCCCTAAGTGAGC	0.552													4	13					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	17	21731137	21731137	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:21731137C>T	uc002gyy.3	+	2	564	c.439C>T	c.(439-441)CTG>TTG	p.L147L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GCATCTGGTCCTGCGTCTGAG	0.557													9	38					0	0	0.000978	0	0
FAM27L	284123	broad.mit.edu	37	17	21825515	21825515	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:21825515G>A	uc002gyz.2	+	1		c.146G>A				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		cgaaaccacaggcagagtccg	0													12	50					0	0	0.001855	0	0
FOXN1	8456	broad.mit.edu	37	17	26856216	26856216	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:26856216C>T	uc010crm.2	+	5	1002	c.804C>T	c.(802-804)CTC>CTT	p.L268L	FOXN1_uc002hbj.2_Silent_p.L268L	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	268					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					ACCAGCCTCTCTTCCCAAAAC	0.597													48	58					0	0	0.003610	0	0
DHRS13	147015	broad.mit.edu	37	17	27228608	27228608	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:27228608G>A	uc002hde.3	-	3	400	c.273C>T	c.(271-273)TTC>TTT	p.F91F	DHRS13_uc002hdd.3_Silent_p.F41F|DHRS13_uc010wba.1_Intron	NM_144683	NP_653284	Q6UX07	DHR13_HUMAN	dehydrogenase/reductase (SDR family) member 13	91						extracellular region	binding|oxidoreductase activity				0	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.59e-06)|all cancers(11;9.27e-06)|BRCA - Breast invasive adenocarcinoma(11;5.78e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.0602)			CCAAGGCCATGAAGATGACCT	0.587													6	70					0	0	0.001984	0	0
MYO18A	399687	broad.mit.edu	37	17	27493764	27493764	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:27493764G>A	uc002hdt.1	-	2	353	c.195C>T	c.(193-195)CCC>CCT	p.P65P	MYO18A_uc010csa.1_Silent_p.P65P|MYO18A_uc002hdu.1_Silent_p.P65P	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	65					anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TGATGGGGATGGGGTTGGAGA	0.592													8	21					0	0	0.004482	0	0
CORO6	84940	broad.mit.edu	37	17	27943746	27943746	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:27943746C>T	uc002hel.2	-	7	980	c.978G>A	c.(976-978)CTG>CTA	p.L326L	CORO6_uc002hem.2_Silent_p.L92L|CORO6_uc002hen.2_Silent_p.L92L	NM_032854	NP_116243	Q6QEF8	CORO6_HUMAN	coronin 6	326					actin cytoskeleton organization	actin cytoskeleton	actin filament binding				0						TGCTGACATCCAGTCCCCTTT	0.607													16	82					0	0	0.003163	0	0
EFCAB5	374786	broad.mit.edu	37	17	28405450	28405450	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:28405450C>T	uc002het.2	+	15	3147	c.2955C>T	c.(2953-2955)ATC>ATT	p.I985I	EFCAB5_uc010cse.2_Silent_p.I740I|EFCAB5_uc010csf.2_Intron	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	985							calcium ion binding			ovary(1)|skin(1)	2						TGCACCAAATCCAATGTGCTG	0.478													9	68					0	0	0.006214	0	0
LRRC37B	114659	broad.mit.edu	37	17	30358412	30358412	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:30358412T>A	uc002hgu.2	+	5	1922	c.1911T>A	c.(1909-1911)AAT>AAA	p.N637K	LRRC37B_uc010wbx.1_Missense_Mutation_p.N555K|LRRC37B_uc010csu.2_Intron	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	637	LRR 4.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				TGGGCTGCAATTTAATTACAA	0.343													8	54					0	0	0.004482	0	0
ACCN1	40	broad.mit.edu	37	17	31415919	31415919	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:31415919G>A	uc002hhu.2	-	3	1070	c.796C>T	c.(796-798)CCA>TCA	p.P266S	ACCN1_uc002hht.2_Missense_Mutation_p.P317S	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	266	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	TGGAACCCTGGAGCCACCCCA	0.562													3	24					0	0	0.004672	0	0
ACCN1	40	broad.mit.edu	37	17	31438965	31438965	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:31438965C>T	uc002hhu.2	-	2	950	c.676G>A	c.(676-678)GAT>AAT	p.D226N	ACCN1_uc002hht.2_Missense_Mutation_p.D277N	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	226	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	AGGTACTCATCCTGCTGAATG	0.587													11	61					0	0	0.000978	0	0
ZNF830	91603	broad.mit.edu	37	17	33289621	33289621	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:33289621G>A	uc002hih.3	+	1	1073	c.1036G>A	c.(1036-1038)GAA>AAA	p.E346K	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	346	Potential.				cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				GAAAAAGGAAGAAGAGAATGC	0.423													42	47					0	0	0.009718	0	0
LIG3	3980	broad.mit.edu	37	17	33316660	33316660	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:33316660C>T	uc002hik.1	+	4	975	c.867C>T	c.(865-867)TTC>TTT	p.F289F	LIG3_uc002hii.2_Silent_p.F289F|LIG3_uc002hij.2_Silent_p.F289F|LIG3_uc010cth.1_Silent_p.F298F	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	289					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	TCCAGGACTTCCTTCGGAAAG	0.463								Other_BER_factors					34	51					0	0	0.006230	0	0
UNC45B	146862	broad.mit.edu	37	17	33496856	33496856	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:33496856G>A	uc002hja.2	+	11	1550	c.1453G>A	c.(1453-1455)GGA>AGA	p.G485R	UNC45B_uc002hjb.2_Missense_Mutation_p.G485R|UNC45B_uc002hjc.2_Missense_Mutation_p.G485R|UNC45B_uc010cto.2_Intron	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	485					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TCCTCCTCAGGGACTCTGTAA	0.453													17	32					0	0	0.004990	0	0
AMAC1	146861	broad.mit.edu	37	17	33520530	33520530	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:33520530G>T	uc002hjd.2	-	1	883	c.797C>A	c.(796-798)TCC>TAC	p.S266Y		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	266	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		ACATGTGAAGGAGACCAAGGC	0.602													38	84					9.8876e-21	1.10651e-20	0.004878	1	0
AP2B1	163	broad.mit.edu	37	17	33984713	33984713	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:33984713T>C	uc002hjr.2	+	14	2081	c.1892T>C	c.(1891-1893)CTT>CCT	p.L631P	AP2B1_uc002hjq.2_Missense_Mutation_p.L631P|AP2B1_uc010wci.1_Missense_Mutation_p.L593P|AP2B1_uc002hjs.2_Missense_Mutation_p.L574P|AP2B1_uc002hjt.2_Missense_Mutation_p.L631P|AP2B1_uc010ctv.2_Missense_Mutation_p.L631P|AP2B1_uc010wcj.1_Missense_Mutation_p.L368P	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	631	Pro-rich (stalk region).				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		CTAGGGGATCTTTTAAACCTT	0.527													3	61					0	0	0.004672	0	0
ACACA	31	broad.mit.edu	37	17	35470112	35470112	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:35470112G>A	uc002hnm.2	-	51	6443	c.6252C>T	c.(6250-6252)CCC>CCT	p.P2084P	ACACA_uc002hnk.2_Silent_p.P2006P|ACACA_uc002hnl.2_Silent_p.P2026P|ACACA_uc002hnn.2_Silent_p.P2084P|ACACA_uc002hno.2_Silent_p.P2121P|ACACA_uc010cuy.2_Silent_p.P729P|ACACA_uc010wdb.1_Silent_p.P122P|ACACA_uc010wdc.1_Silent_p.P210P	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	2084	Carboxyltransferase.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	GCTCAGCCTGGGGAGGAATGT	0.552													8	33					0	0	0.006214	0	0
DUSP14	11072	broad.mit.edu	37	17	35872918	35872918	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:35872918C>T	uc002hnx.2	+	3	838	c.544C>T	c.(544-546)CCC>TCC	p.P182S	DUSP14_uc002hny.2_Missense_Mutation_p.P169S|DUSP14_uc002hnz.2_Missense_Mutation_p.P169S	NM_007026	NP_008957	O95147	DUS14_HUMAN	dual specificity phosphatase 14	182							MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Breast(25;0.00637)|Ovarian(249;0.15)				TGGCATAGTTCCCGACGTCTA	0.562													25	47					0	0	0.003330	0	0
SYNRG	11276	broad.mit.edu	37	17	35928907	35928907	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:35928907G>A	uc002hoa.2	-	11	1550	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S	SYNRG_uc010wde.1_Silent_p.S411S|SYNRG_uc010wdf.1_Silent_p.S411S|SYNRG_uc002hoc.2_Silent_p.S410S|SYNRG_uc002hoe.2_Silent_p.S411S|SYNRG_uc002hod.2_Silent_p.S411S|SYNRG_uc010wdg.1_Silent_p.S328S|SYNRG_uc002hob.2_Silent_p.S489S|SYNRG_uc002hof.2_Silent_p.S201S|SYNRG_uc010cvd.1_Silent_p.S289S|SYNRG_uc002hog.1_Silent_p.S623S	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	489					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						TTCCATGCTGGGAGTTACTTG	0.368													12	63					0	0	0.000978	0	0
TBC1D3	729873	broad.mit.edu	37	17	36288204	36288204	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:36288204G>A	uc002hoo.2	+	6	447	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.R17Q|TBC1D3_uc010cvf.1_Missense_Mutation_p.R97Q|TBC1D3_uc002hoq.2_Missense_Mutation_p.R97Q|TBC1D3_uc010wdk.1_Missense_Mutation_p.R158Q|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	97						intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTCATAGATCGAGCGTACAAG	0.547													31	650					0	0	0.009535	0	0
GPR179	440435	broad.mit.edu	37	17	36499102	36499102	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:36499102C>T	uc002hpz.2	-	1	592	c.571G>A	c.(571-573)GAC>AAC	p.D191N		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	191	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GTGTCCAGGTCCCCAGGAGGG	0.637													15	49					0	0	0.003163	0	0
PIP4K2B	8396	broad.mit.edu	37	17	36927333	36927333	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:36927333G>A	uc002hqs.2	-	8	1481	c.1000C>T	c.(1000-1002)CCT>TCT	p.P334S	PIP4K2B_uc010cvp.2_5'Flank	NM_003559	NP_003550	P78356	PI42B_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	334	PIPK.				cell surface receptor linked signaling pathway	endoplasmic reticulum membrane|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|receptor signaling protein activity			ovary(1)	1						AAGAACCGAGGAAAGCTGAGG	0.512													5	51					0	0	0.001168	0	0
CACNB1	782	broad.mit.edu	37	17	37331907	37331907	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:37331907G>A	uc002hrm.1	-	14	1489	c.1336C>T	c.(1336-1338)CCC>TCC	p.P446S	CACNB1_uc002hrl.1_Missense_Mutation_p.P218S	NM_000723	NP_000714	Q02641	CACB1_HUMAN	calcium channel, voltage-dependent, beta 1	446					axon guidance	voltage-gated calcium channel complex				large_intestine(1)|ovary(1)	2					Ibutilide(DB00308)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Verapamil(DB00661)	GCAAGGTAGGGTCCCTGGTTA	0.602													11	49					0	0	0.000978	0	0
ERBB2	2064	broad.mit.edu	37	17	37873615	37873615	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:37873615C>T	uc002hso.2	+	15	2018	c.1780C>T	c.(1780-1782)CCC>TCC	p.P594S	ERBB2_uc002hsm.2_Missense_Mutation_p.P564S|ERBB2_uc010cwa.2_Missense_Mutation_p.P579S|ERBB2_uc002hsp.2_Missense_Mutation_p.P397S|ERBB2_uc010cwb.2_Missense_Mutation_p.P594S|ERBB2_uc010wek.1_Missense_Mutation_p.P318S|ERBB2_uc002hsl.2_Missense_Mutation_p.P564S	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	594	Extracellular (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	TAAGGACCCTCCCTTCTGCGT	0.632		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			5	32					0	0	0.000602	0	0
KRT33B	3884	broad.mit.edu	37	17	39522757	39522757	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:39522757C>T	uc002hwl.2	-	3	598	c.553G>A	c.(553-555)GAG>AAG	p.E185K		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	185	Rod.|Coil 1B.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				AGCAGCTCCTCCTTCAGGGAC	0.577													8	47					0	0	0.004482	0	0
KRT34	3885	broad.mit.edu	37	17	39535320	39535320	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:39535320G>A	uc002hwm.2	-	6	1123	c.1111C>T	c.(1111-1113)CGC>TGC	p.R371C		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	371	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				AGGTCACAGCGGATCTCTGCC	0.622													25	57					0	0	0.004656	0	0
KRT16	3868	broad.mit.edu	37	17	39767899	39767899	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:39767899G>A	uc002hxg.3	-	2	745	c.606C>T	c.(604-606)TTC>TTT	p.F202F	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	202	Coil 1B.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				ACTTGGTCCTGAAGTCATCGG	0.622													6	17					0	0	0.001984	0	0
SC65	10609	broad.mit.edu	37	17	39959569	39959569	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:39959569G>A	uc002hxt.2	-	7	1545	c.1261C>T	c.(1261-1263)CCG>TCG	p.P421S	SC65_uc002hxu.2_Missense_Mutation_p.P512S	NM_006455	NP_006446	Q92791	SC65_HUMAN	synaptonemal complex protein SC65	421	Asp/Glu-rich (acidic).				synaptonemal complex assembly	nucleolus|synaptonemal complex	binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.149)		TTGGCATCCGGCTCCTGCCAC	0.632													12	36					0	0	0.003163	0	0
NT5C3L	115024	broad.mit.edu	37	17	39985093	39985093	+	Silent	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:39985093C>A	uc002hyc.3	-	7	627	c.618G>T	c.(616-618)GTG>GTT	p.V206V	NT5C3L_uc002hxx.3_Silent_p.V71V|NT5C3L_uc010wfu.1_Silent_p.V71V|NT5C3L_uc002hyb.3_Silent_p.V129V|NT5C3L_uc002hyd.3_Silent_p.V129V|NT5C3L_uc002hxy.3_Silent_p.V164V|NT5C3L_uc002hxz.3_Silent_p.V129V|NT5C3L_uc002hya.3_Intron	NM_052935	NP_443167	C9JKC4	C9JKC4_HUMAN	5'-nucleotidase, cytosolic III-like	172						cytoplasm	5'-nucleotidase activity|magnesium ion binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.15)		TGGGGTGGAACACTTTCATCT	0.458													38	60					2.19358e-23	2.45667e-23	0.005524	1	0
KAT2A	2648	broad.mit.edu	37	17	40271325	40271325	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:40271325G>A	uc002hyx.2	-	6	1071	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F		NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	337					chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						TCTCCACTCGGAACTTTTCCA	0.567													55	83					0	0	0.003610	0	0
GHDC	84514	broad.mit.edu	37	17	40343101	40343101	+	Silent	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:40343101A>T	uc002hzd.2	-	5	1501	c.1017T>A	c.(1015-1017)CTT>CTA	p.L339L	GHDC_uc002hzg.1_Silent_p.L339L|GHDC_uc010wgg.1_Silent_p.L300L|GHDC_uc002hze.3_Silent_p.L339L|GHDC_uc002hzf.3_Silent_p.L339L	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	339						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		CCTCGGCCAAAAGGAGGGTGG	0.662													12	57					0	0	0.000978	0	0
STAT3	6774	broad.mit.edu	37	17	40476848	40476848	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:40476848G>A	uc002hzl.1	-	17	1721	c.1481C>T	c.(1480-1482)ACC>ATC	p.T494I	STAT3_uc002hzk.1_Missense_Mutation_p.T494I|STAT3_uc002hzm.1_Missense_Mutation_p.T494I|STAT3_uc010wgh.1_Missense_Mutation_p.T396I|STAT3_uc002hzn.1_Missense_Mutation_p.T494I	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	494					cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		TGGGGGCTTGGTAAAAAAGTT	0.488									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				29	35					0	0	0.009535	0	0
WNK4	65266	broad.mit.edu	37	17	40936049	40936049	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:40936049C>T	uc002ibj.2	+	3	907	c.886C>T	c.(886-888)CCT>TCT	p.P296S	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_Missense_Mutation_p.P68S|WNK4_uc010wgy.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	296	Protein kinase.				intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CTCCCGGGTTCCTCCCATCCT	0.617													25	48					0	0	0.002780	0	0
WNK4	65266	broad.mit.edu	37	17	40940333	40940333	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:40940333C>T	uc002ibj.2	+	10	1969	c.1948C>T	c.(1948-1950)CTT>TTT	p.L650F	WNK4_uc010wgx.1_Missense_Mutation_p.L314F|WNK4_uc002ibk.1_Missense_Mutation_p.L422F|WNK4_uc010wgy.1_5'UTR	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	650					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		AGCTTCAGGCCTTAGCGATGT	0.577													10	51					0	0	0.000978	0	0
G6PC	2538	broad.mit.edu	37	17	41063392	41063392	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:41063392C>T	uc002icb.1	+	5	1102	c.1023C>T	c.(1021-1023)ATC>ATT	p.I341I	G6PC_uc010whf.1_3'UTR	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	341	Helical; (Potential).		I -> N (in GSD1A).		gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		TCAGTGTCATCCCCTACTGCC	0.547									Glycogen_Storage_Disease_type_Ia				20	97					0	0	0.010504	0	0
ETV4	2118	broad.mit.edu	37	17	41611318	41611318	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:41611318C>T	uc002idw.2	-	6	420	c.292G>A	c.(292-294)GAG>AAG	p.E98K	ETV4_uc010wih.1_Missense_Mutation_p.E98K|ETV4_uc010czh.2_Missense_Mutation_p.E97K|ETV4_uc010wii.1_Missense_Mutation_p.E59K|ETV4_uc002idx.2_Missense_Mutation_p.E98K|ETV4_uc010wij.1_Missense_Mutation_p.E59K|ETV4_uc002idy.1_Missense_Mutation_p.E59K	NM_001986	NP_001977	P43268	ETV4_HUMAN	ets variant gene 4 (E1A enhancer binding	98				E->A: Loss of polysumoylation and ubiquitination; when associated with A- 228; A-262; A-324 and A-443.	positive regulation of transcription, DNA-dependent	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/ETV4(6)	bone(4)|soft_tissue(2)|ovary(1)	7		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0798)		CTCTGGGGCTCCTTCTTGATC	0.647			T	EWSR1|TMPRSS2|DDX5|KLK2|CANT1	Ewing sarcoma|Prostate carcinoma								7	12					0	0	0.003080	0	0
CD300LG	146894	broad.mit.edu	37	17	41939175	41939175	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:41939175G>A	uc002iem.2	+	7	936	c.895G>A	c.(895-897)GAA>AAA	p.E299K		NM_145273	NP_660316	Q6UXG3	CLM9_HUMAN	CD300 molecule-like family member g precursor	299	Cytoplasmic (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|multivesicular body membrane	receptor activity				0		Breast(137;0.0199)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GACTGCGGAGGAAAAGGAAGC	0.602													7	24					0	0	0.003080	0	0
SLC4A1	6521	broad.mit.edu	37	17	42335105	42335105	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:42335105G>A	uc002igf.3	-	12	1502	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F	SLC4A1_uc002igg.3_Silent_p.F451F	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	451	Membrane (anion exchange).|Helical; (Potential).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CCAGCAGGGCGAAGAGAATGC	0.592													7	29					0	0	0.001984	0	0
ITGB3	3690	broad.mit.edu	37	17	45364510	45364510	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:45364510G>A	uc002ilj.2	+	6	872	c.852G>A	c.(850-852)TTG>TTA	p.L284L	ITGB3_uc002ili.1_Silent_p.L284L|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	284	VWFA.|Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	ATATAGCATTGGACGGAAGGC	0.463													18	60					0	0	0.007413	0	0
SKAP1	8631	broad.mit.edu	37	17	46474085	46474085	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:46474085G>A	uc002ini.1	-	2	221	c.109C>T	c.(109-111)CAC>TAC	p.H37Y	SKAP1_uc002inj.1_Missense_Mutation_p.H37Y|SKAP1_uc010dbd.1_5'UTR|SKAP1_uc010dbe.1_Missense_Mutation_p.H37Y	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	37					positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						TGGTCTCTGTGATCCCTTGCA	0.378													109	127					0	0	0.003610	0	0
HOXB2	3212	broad.mit.edu	37	17	46620542	46620542	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:46620542C>T	uc002inm.2	-	2	1079	c.959G>A	c.(958-960)GGA>GAA	p.G320E		NM_002145	NP_002136	P14652	HXB2_HUMAN	homeobox B2	320					blood circulation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGAGAGGCCTCCGGATAGCTG	0.597													42	61					0	0	0.002522	0	0
GIP	2695	broad.mit.edu	37	17	47041831	47041831	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:47041831G>A	uc002iol.1	-	3	196	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_004123	NP_004114	P09681	GIP_HUMAN	gastric inhibitory polypeptide preproprotein	33					energy reserve metabolic process|signal transduction	extracellular region|soluble fraction	hormone activity			skin(1)	1						AACAGGCAGGGAGGGGAGAGC	0.557													23	42					0	0	0.002299	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47103026	47103026	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:47103026G>A	uc002iom.2	+	3	617	c.283G>A	c.(283-285)GAA>AAA	p.E95K	IGF2BP1_uc010dbj.2_Missense_Mutation_p.E95K	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	95	RRM 2.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						GCTCCGATGGGAAGTAAGTGT	0.478													5	16					0	0	0.000602	0	0
COL1A1	1277	broad.mit.edu	37	17	48263204	48263204	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:48263204C>T	uc002iqm.2	-	50	4309	c.4183G>A	c.(4183-4185)GAG>AAG	p.E1395K		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1395	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ATCTCGATCTCGTTGGAGCCC	0.627			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						19	34					0	0	0.010504	0	0
COL1A1	1277	broad.mit.edu	37	17	48266114	48266114	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:48266114G>A	uc002iqm.2	-	42	3214	c.3088C>T	c.(3088-3090)CCT>TCT	p.P1030S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1030	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	TTGGCGCCAGGAGAACCGTCT	0.622			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						35	42					0	0	0.005524	0	0
KIF2B	84643	broad.mit.edu	37	17	51900977	51900977	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:51900977C>T	uc002iua.2	+	1	739	c.583C>T	c.(583-585)CGC>TGC	p.R195C	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	195					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CGAAGAGTATCGCAGGCACCT	0.577													14	46					0	0	0.002450	0	0
TMEM100	55273	broad.mit.edu	37	17	53798111	53798111	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:53798111C>T	uc002iuj.3	-	2	632	c.321G>A	c.(319-321)TGG>TGA	p.W107*	TMEM100_uc002iuk.3_Nonsense_Mutation_p.W107*	NM_018286	NP_060756	Q9NV29	TM100_HUMAN	transmembrane protein 100	107						integral to membrane					0						GTCTCACTTTCCAGCACAAGG	0.463													18	75					0	0	0.007413	0	0
BZRAP1	9256	broad.mit.edu	37	17	56389063	56389063	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:56389063C>T	uc002ivx.3	-	18	3821	c.2950G>A	c.(2950-2952)GAT>AAT	p.D984N	BZRAP1_uc010dcs.2_Missense_Mutation_p.D924N|BZRAP1_uc010wnt.1_Missense_Mutation_p.D984N	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	984	Fibronectin type-III 3.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ATCTGCACATCCAGAGGGGCA	0.607													10	20					0	0	0.000978	0	0
C17orf47	284083	broad.mit.edu	37	17	56620146	56620146	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:56620146G>A	uc002iwq.1	-	1	1538	c.1402C>T	c.(1402-1404)CCT>TCT	p.P468S	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	468										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCACAGAAAGGGCTAGAGTCT	0.478													41	181					0	0	0.006230	0	0
CLTC	1213	broad.mit.edu	37	17	57761064	57761064	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:57761064A>G	uc002ixq.1	+	27	4713	c.4270A>G	c.(4270-4272)ATG>GTG	p.M1424V	CLTC_uc002ixp.2_Missense_Mutation_p.M1424V|CLTC_uc002ixr.1_Missense_Mutation_p.M1428V	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1424	Heavy chain arm.|Proximal segment.|Involved in binding clathrin light chain (By similarity).				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TGATTTGCTGATGGTGCTGTC	0.383			T	ALK|TFE3	ALCL|renal 								16	46					0	0	0.003163	0	0
HEATR6	63897	broad.mit.edu	37	17	58134512	58134512	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:58134512G>A	uc002iyk.1	-	12	1993	c.1976C>T	c.(1975-1977)TCC>TTC	p.S659F	HEATR6_uc010ddk.1_Missense_Mutation_p.S198F|HEATR6_uc010wos.1_Missense_Mutation_p.S491F	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	659							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			TACGACAATGGAAATGCAGAG	0.557													15	87					0	0	0.002450	0	0
BCAS3	54828	broad.mit.edu	37	17	58988023	58988023	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:58988023T>G	uc002iyv.3	+	12	1062	c.953T>G	c.(952-954)ATC>AGC	p.I318S	BCAS3_uc010wow.1_Missense_Mutation_p.I105S|BCAS3_uc002iyu.3_Missense_Mutation_p.I318S|BCAS3_uc002iyw.3_Missense_Mutation_p.I314S|BCAS3_uc002iyx.1_Missense_Mutation_p.I133S|BCAS3_uc002iyy.3_Missense_Mutation_p.I89S	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	318						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			GTCCCAGGCATCATCACAGTT	0.493													11	74					0	0	0.003163	0	0
GH2	2689	broad.mit.edu	37	17	61958410	61958410	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:61958410C>T	uc002jco.1	-	3	332	c.270G>A	c.(268-270)AGG>AGA	p.R90R	GH2_uc002jcj.2_Silent_p.R90R|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Silent_p.R90R|GH2_uc002jcm.1_Silent_p.R90R|GH2_uc002jcn.1_Silent_p.R75R	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	90						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						GCGTTTTCACCCTGTTGGAAG	0.557													35	156					0	0	0.004878	0	0
SCN4A	6329	broad.mit.edu	37	17	62020281	62020281	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:62020281C>T	uc002jds.1	-	23	4270	c.4193G>A	c.(4192-4194)GGG>GAG	p.G1398E		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1398	IV.|Helical; Name=S2 of repeat IV; (Potential).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CACGCACTCCCCTGTGAAGAT	0.517													22	54					0	0	0.002299	0	0
SMURF2	64750	broad.mit.edu	37	17	62568040	62568040	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:62568040G>A	uc002jep.1	-	10	1280	c.892C>T	c.(892-894)CCA>TCA	p.P298S	SMURF2_uc002jeq.1_Missense_Mutation_p.P57S|SMURF2_uc002jer.1_Missense_Mutation_p.P57S	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	298	WW 3.			Missing: Abolishes interaction with SMAD7.	BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			GGAGGCAATGGACCAAGCTCT	0.418													9	30					0	0	0.008291	0	0
CACNG5	27091	broad.mit.edu	37	17	64881232	64881232	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:64881232G>A	uc010wqi.1	+	6	940	c.703G>A	c.(703-705)GAC>AAC	p.D235N	CACNG5_uc010wqj.1_Missense_Mutation_p.D235N	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	235				SAGVMSVYLFMKRYTAEDMYRPHPGFYRPRLSNCSDYSGQF LHPDAWVRGRSPSDISSEASLQMNSNYPALLKCPDYDQMSS SPC -> VKPVTLSMDRLGLGTAPLSRGEWGWGRRDIPQPF WTPDHPLYFPSSSQNVSLSYLSGSPPARMSPGPCSCPHVHF PPHSSCVLCRPQPREMRQAPAASPSSAVFSL (in Ref. 1; AAF03089).	regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			CCTACACCCAGACGCCTGGGT	0.637													11	39					0	0	0.000978	0	0
ABCA9	10350	broad.mit.edu	37	17	67017945	67017945	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:67017945G>A	uc002jhu.2	-	18	2482	c.2339C>T	c.(2338-2340)TCC>TTC	p.S780F	ABCA9_uc010dez.2_Missense_Mutation_p.S780F	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	780					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					AGTTGTTATGGAAACACCATA	0.249													29	55					0	0	0.002096	0	0
ABCA10	10349	broad.mit.edu	37	17	67178296	67178296	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:67178296G>A	uc010dfa.1	-	23	3646	c.2767C>T	c.(2767-2769)CGT>TGT	p.R923C	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Missense_Mutation_p.R524C	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	923					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					CTACTTACACGAGAAAATGAA	0.234													8	21					0	0	0.003080	0	0
OTOP3	347741	broad.mit.edu	37	17	72937888	72937888	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:72937888G>A	uc010wrr.1	+	2	474	c.474G>A	c.(472-474)GGG>GGA	p.G158G	OTOP3_uc010wrq.1_Silent_p.G140G	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	158						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					CCCACGCGGGGCCCCTCTGGG	0.682													4	12					0	0	0.009096	0	0
OTOP3	347741	broad.mit.edu	37	17	72943385	72943385	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:72943385G>A	uc010wrr.1	+	6	1435	c.1435G>A	c.(1435-1437)GAG>AAG	p.E479K	OTOP3_uc010wrq.1_Missense_Mutation_p.E461K	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	479						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					CCCACTCTGGGAGACAGTTCC	0.667													11	11					0	0	0.000978	0	0
ITGB4	3691	broad.mit.edu	37	17	73728296	73728296	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:73728296G>A	uc002jpg.2	+	12	1617	c.1430G>A	c.(1429-1431)GGA>GAA	p.G477E	ITGB4_uc002jph.2_Missense_Mutation_p.G477E|ITGB4_uc010dgo.2_Missense_Mutation_p.G477E|ITGB4_uc002jpi.3_Missense_Mutation_p.G477E|ITGB4_uc010dgp.1_Missense_Mutation_p.G477E|ITGB4_uc002jpj.2_Missense_Mutation_p.G477E|ITGB4_uc010wsh.1_Missense_Mutation_p.G32E	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	477	I.|Extracellular (Potential).|Cysteine-rich tandem repeats.				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TTCGTGTGCGGACAGTGTGTG	0.642													19	36					0	0	0.010504	0	0
UNK	85451	broad.mit.edu	37	17	73780818	73780818	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:73780818G>A	uc002jpm.2	+	2	85	c.85G>A	c.(85-87)GAA>AAA	p.E29K	UNK_uc002jpn.2_RNA|UNK_uc002jpo.2_RNA	NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	Error:Variant_position_missing_in_Q9C0B0_after_alignment							nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCGGACATAGAACCACAACT	0.637													7	17					0	0	0.006214	0	0
UNK	85451	broad.mit.edu	37	17	73818612	73818612	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:73818612C>T	uc002jpm.2	+	15	2120	c.2120C>T	c.(2119-2121)TCC>TTC	p.S707F		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	631							nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGAAGCTTCTCCCCGGGCACT	0.617													18	97					0	0	0.010504	0	0
EVPL	2125	broad.mit.edu	37	17	74019684	74019684	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:74019684C>T	uc002jqi.2	-	3	478	c.250G>A	c.(250-252)GGC>AGC	p.G84S	EVPL_uc010wss.1_Missense_Mutation_p.G84S|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	84	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGGCTGCGGCCCGTCTCCTGC	0.667													8	10					0	0	0.003080	0	0
DNAH17	8632	broad.mit.edu	37	17	76498998	76498999	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:76498998_76498999CC>TT	uc010wtu.1	-	6	1103_1104	c.926_927GG>AA	c.(925-927)AGG>AAA	p.R309K	uc002jvt.1_RNA					full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCCACTGCTCCCTCGGCTTCTC	0.629													4	28					0	0	0.004672	0	0
CCDC40	55036	broad.mit.edu	37	17	78058567	78058567	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:78058567G>A	uc010dht.2	+	13	2042	c.2015G>A	c.(2014-2016)GGT>GAT	p.G672D	CCDC40_uc002jxm.3_Missense_Mutation_p.G455D|CCDC40_uc002jxn.3_Missense_Mutation_p.G68D	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	672					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			AAAATCAACGGTGACATTGCC	0.527													13	18					0	0	0.001855	0	0
RNF213	57674	broad.mit.edu	37	17	78318516	78318516	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:78318516C>T	uc002jyh.1	+	4	823	c.600C>T	c.(598-600)TTC>TTT	p.F200F		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TTGACATCTTCCCAAAAGTCA	0.473													17	108					0	0	0.010504	0	0
SLC38A10	124565	broad.mit.edu	37	17	79220107	79220107	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:79220107G>A	uc002jzz.1	-	16	2984	c.2609C>T	c.(2608-2610)CCA>CTA	p.P870L	SLC38A10_uc002jzy.1_Missense_Mutation_p.P788L	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	870					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			GCGCTCCTCTGGGCCCCCGGC	0.667													41	61					0	0	0.002852	0	0
C17orf70	80233	broad.mit.edu	37	17	79517625	79517625	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:79517625C>T	uc002kaq.2	-	3	950	c.895G>A	c.(895-897)GAG>AAG	p.E299K	C17orf70_uc002kao.1_5'Flank|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Missense_Mutation_p.E148K	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	299					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			AGAAAATTCTCTGCAGCTTCT	0.582													14	56					0	0	0.004007	0	0
CCDC57	284001	broad.mit.edu	37	17	80159600	80159600	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:80159600T>C	uc002kdz.1	-	3	576	c.221A>G	c.(220-222)TAT>TGT	p.Y74C	CCDC57_uc002kdx.1_Missense_Mutation_p.Y74C	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	74	Potential.									ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			GGCGGCGTCATAGCGCTCCAG	0.652													11	43					0	0	0.000978	0	0
TBCD	6904	broad.mit.edu	37	17	80828235	80828236	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:80828235_80828236CC>AT	uc002kfz.2	+	14	1584_1585	c.1454_1455CC>AT	c.(1453-1455)CCC>CAT	p.P485H	TBCD_uc002kfx.1_Missense_Mutation_p.P468H|TBCD_uc002kfy.1_Missense_Mutation_p.P485H	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	485					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			GAGCTGAAGCCCTTTGTGACTG	0.644													6	11					0	0	0.004672	0	0
TBCD	6904	broad.mit.edu	37	17	80847546	80847546	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr17:80847546C>T	uc002kfz.2	+	16	1666	c.1536C>T	c.(1534-1536)GCC>GCT	p.A512A	TBCD_uc002kfx.1_Silent_p.A495A|TBCD_uc002kfy.1_Silent_p.A512A	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	512					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			CTCCGCAGGCCGCCTTCCAGG	0.502													16	28					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	18	120727	120727	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:120727G>A	uc002kke.2	+	5		c.965G>A								Homo sapiens Rho-associated, coiled-coil containing protein kinase 1, mRNA (cDNA clone IMAGE:5269982), complete cds.																		GTGCCTTGTGGAATCGTGTGG	0.423													5	23					0	0	0.001168	0	0
COLEC12	81035	broad.mit.edu	37	18	480727	480727	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:480727G>A	uc002kkm.2	-	2	253	c.38C>T	c.(37-39)TCC>TTC	p.S13F		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	13	Cytoplasmic (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				GTAACCGAAGGATTGCACCTC	0.552													23	83					0	0	0.005443	0	0
DLGAP1	9229	broad.mit.edu	37	18	3534325	3534325	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:3534325C>T	uc002kmf.2	-	7	2413	c.2346G>A	c.(2344-2346)GAG>GAA	p.E782E	DLGAP1_uc010wyz.1_Silent_p.E782E|DLGAP1_uc002kme.1_Silent_p.E480E|DLGAP1_uc010dkn.2_Silent_p.E490E|DLGAP1_uc010wyw.1_Silent_p.E488E|DLGAP1_uc010wyx.1_Silent_p.E504E|DLGAP1_uc010wyy.1_Silent_p.E466E|DLGAP1_uc002kmg.2_Silent_p.E480E	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	782					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				TTTGCACGGCCTCCAGAGGGT	0.582													11	17					0	0	0.008291	0	0
DLGAP1	9229	broad.mit.edu	37	18	3742415	3742415	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:3742415C>T	uc002kmf.2	-	3	1337	c.1270G>A	c.(1270-1272)GAC>AAC	p.D424N	DLGAP1_uc010wyz.1_Missense_Mutation_p.D424N|DLGAP1_uc002kme.1_Missense_Mutation_p.D122N|DLGAP1_uc010dkn.2_Missense_Mutation_p.D122N|DLGAP1_uc010wyw.1_Missense_Mutation_p.D130N|DLGAP1_uc010wyx.1_Missense_Mutation_p.D136N|DLGAP1_uc010wyy.1_Missense_Mutation_p.D136N|DLGAP1_uc002kmg.2_Missense_Mutation_p.D122N|DLGAP1_uc002kmk.2_Missense_Mutation_p.D424N	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	424					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CCTGCAGGGTCCAGGCTGTCC	0.567													6	25					0	0	0.001168	0	0
LAMA1	284217	broad.mit.edu	37	18	7036045	7036045	+	Missense_Mutation	SNP	C	T	T	rs143022454	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:7036045C>T	uc002knm.2	-	13	1874	c.1780G>A	c.(1780-1782)GAT>AAT	p.D594N	LAMA1_uc010wzj.1_Missense_Mutation_p.D70N	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	594	Laminin IV type A 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACCGGAATATCGTAGGACACC	0.443													5	34					0	0	0.000602	0	0
LAMA1	284217	broad.mit.edu	37	18	7042163	7042163	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:7042163G>A	uc002knm.2	-	9	1336	c.1242C>T	c.(1240-1242)CTC>CTT	p.L414L	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	414	Laminin EGF-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGTCAGAATGGAGGTCATCCT	0.443													9	15					0	0	0.001368	0	0
KIAA0802	23255	broad.mit.edu	37	18	8824715	8824715	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:8824715C>T	uc002knr.2	+	15	3349	c.3207C>T	c.(3205-3207)TCC>TCT	p.S1069S	KIAA0802_uc002knq.2_Silent_p.S1028S|KIAA0802_uc002kns.2_Silent_p.S409S	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1379											0						CCGTGTCCTCCATGTCTGAGT	0.597													11	10					0	0	0.000978	0	0
ANKRD12	23253	broad.mit.edu	37	18	9257666	9257666	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:9257666C>T	uc002knv.2	+	9	4658	c.4401C>T	c.(4399-4401)TCC>TCT	p.S1467S	ANKRD12_uc002knw.2_Silent_p.S1444S|ANKRD12_uc002knx.2_Silent_p.S1444S|ANKRD12_uc010dkx.1_Silent_p.S1174S	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1467						nucleus				ovary(2)|central_nervous_system(1)	3						ATTTTTTATCCCTGCGCCAGA	0.428													12	45					0	0	0.001368	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258199	9258199	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:9258199T>G	uc002knv.2	+	9	5191	c.4934T>G	c.(4933-4935)TTG>TGG	p.L1645W	ANKRD12_uc002knw.2_Missense_Mutation_p.L1622W|ANKRD12_uc002knx.2_Missense_Mutation_p.L1622W|ANKRD12_uc010dkx.1_Missense_Mutation_p.L1352W	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1645						nucleus				ovary(2)|central_nervous_system(1)	3						TTAACTCATTTGAGTAGGTGT	0.368													7	22					0	0	0.003080	0	0
TXNDC2	84203	broad.mit.edu	37	18	9886722	9886722	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:9886722C>T	uc002koi.3	+	2	695	c.246C>T	c.(244-246)GCC>GCT	p.A82A	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Silent_p.A15A	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	82					cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						AGTCTGATGCCTCACAGGAGG	0.567													17	31					0	0	0.004007	0	0
NPC1	4864	broad.mit.edu	37	18	21116700	21116700	+	Missense_Mutation	SNP	A	G	G	rs80358259		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:21116700A>G	uc002kum.3	-	21	3456	c.3182T>C	c.(3181-3183)ATA>ACA	p.I1061T	NPC1_uc010xaz.1_Missense_Mutation_p.I794T	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	1061			I -> T (in NPC1; late infantile form).		autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					ATTACTGGCTATAAGTCGGGC	0.522													13	17					0	0	0.002450	0	0
NPC1	4864	broad.mit.edu	37	18	21137137	21137137	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:21137137G>A	uc002kum.3	-	7	1173	c.899C>T	c.(898-900)TCC>TTC	p.S300F	NPC1_uc010xaz.1_Missense_Mutation_p.S84F|NPC1_uc010xba.1_Missense_Mutation_p.S145F	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	300					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AGTGTACTCGGAGACAAAATA	0.383													4	14					0	0	0.001168	0	0
LAMA3	3909	broad.mit.edu	37	18	21479405	21479405	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:21479405G>A	uc002kuq.2	+	47	6076	c.5990G>A	c.(5989-5991)AGG>AAG	p.R1997K	LAMA3_uc002kur.2_Intron|LAMA3_uc002kus.3_Missense_Mutation_p.R388K|LAMA3_uc002kut.3_Intron	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1997	Domain II and I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCTGATAAAAGGGAGTCGCAG	0.483													10	19					0	0	0.000978	0	0
LAMA3	3909	broad.mit.edu	37	18	21530123	21530123	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:21530123G>T	uc002kuq.2	+	72	9728	c.9642G>T	c.(9640-9642)AAG>AAT	p.K3214N	LAMA3_uc002kur.2_Missense_Mutation_p.K3158N|LAMA3_uc002kus.3_Missense_Mutation_p.K1605N|LAMA3_uc002kut.3_Missense_Mutation_p.K1549N	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3214	Laminin G-like 5.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGCAGGAAAGGTGTGTAGCA	0.512													16	40					1.3612e-06	1.51119e-06	0.003163	1	0
DSG1	1828	broad.mit.edu	37	18	28914018	28914018	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:28914018T>A	uc002kwp.2	+	8	1070	c.858T>A	c.(856-858)AAT>AAA	p.N286K		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	286	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TAAATTCAAATTTGCTCGAGA	0.343													34	74					0	0	0.004289	0	0
DSG4	147409	broad.mit.edu	37	18	28966657	28966657	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:28966657G>A	uc002kwq.2	+	3	226	c.91G>A	c.(91-93)GAA>AAA	p.E31K	DSG4_uc002kwr.2_Missense_Mutation_p.E31K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	31					homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TAAGGTGAAGGAATTTGACAT	0.383													10	43					0	0	0.008291	0	0
DSG4	147409	broad.mit.edu	37	18	28989458	28989458	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:28989458G>A	uc002kwq.2	+	13	2112	c.1977G>A	c.(1975-1977)CAG>CAA	p.Q659Q	DSG4_uc002kwr.2_Silent_p.Q659Q	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	659	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AACAGAGACAGCCAGAAGGCC	0.532													33	102					0	0	0.003271	0	0
DSG2	1829	broad.mit.edu	37	18	29111134	29111134	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:29111134G>A	uc002kwu.3	+	9	1387	c.1199G>A	c.(1198-1200)AGC>AAC	p.S400N		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	400	Extracellular (Potential).|Cadherin 4.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			GTTAGCGAGAGCATGGATAGA	0.403													16	59					0	0	0.006122	0	0
KLHL14	57565	broad.mit.edu	37	18	30350077	30350077	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:30350077C>T	uc002kxm.1	-	2	866	c.478G>A	c.(478-480)GTC>ATC	p.V160I		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	160						cytosol|endoplasmic reticulum membrane				ovary(1)	1						ATCTTGCTGACCGACAGCACC	0.617													16	73					0	0	0.003163	0	0
ASXL3	80816	broad.mit.edu	37	18	31325250	31325250	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:31325250G>A	uc010dmg.1	+	12	5493	c.5438G>A	c.(5437-5439)GGG>GAG	p.G1813E	ASXL3_uc002kxq.2_Missense_Mutation_p.G1520E	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1813					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TACTTGGCAGGGACTCTGGCA	0.478													23	113					0	0	0.003330	0	0
C18orf10	25941	broad.mit.edu	37	18	34398865	34398865	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:34398865A>G	uc002kzw.1	-	2	585	c.157T>C	c.(157-159)TGG>CGG	p.W53R	C18orf10_uc002kzv.1_Missense_Mutation_p.W53R|C18orf10_uc010xci.1_Missense_Mutation_p.W53R|C18orf10_uc002kzx.1_Missense_Mutation_p.W53R|C18orf10_uc002kzy.3_Missense_Mutation_p.W53R	NM_015476	NP_056291	Q68CL5	TPGS2_HUMAN	tubulin polyglutamylase complex subunit 2	53						cytoplasm|microtubule				skin(1)	1						ACTTGTTCCCAGGAAGAAATC	0.433													38	77					0	0	0.002852	0	0
RIT2	6014	broad.mit.edu	37	18	40323574	40323574	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:40323574C>T	uc002lav.2	-	5	711	c.538G>A	c.(538-540)GAA>AAA	p.E180K	RIT2_uc010dnf.2_3'UTR	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	180					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						TTGCGAATTTCCCTCACTAAG	0.423													27	59					0	0	0.006320	0	0
HAUS1	115106	broad.mit.edu	37	18	43702488	43702488	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:43702488C>T	uc002lbu.2	+	5	612	c.532C>T	c.(532-534)CGT>TGT	p.R178C	HAUS1_uc002lbv.2_Missense_Mutation_p.R102C	NM_138443	NP_612452	Q96CS2	HAUS1_HUMAN	coiled-coil domain containing 5	178					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole				ovary(1)	1						AGTTGATAATCGTCGTCAGAA	0.378													23	28					0	0	0.002780	0	0
HAUS1	115106	broad.mit.edu	37	18	43705713	43705713	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:43705713C>T	uc002lbu.2	+	8	822	c.742C>T	c.(742-744)CCG>TCG	p.P248S	HAUS1_uc002lbv.2_Missense_Mutation_p.P172S	NM_138443	NP_612452	Q96CS2	HAUS1_HUMAN	coiled-coil domain containing 5	248					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole				ovary(1)	1						TTTAAAGAATCCGTCTCTTGC	0.279													8	10					0	0	0.004482	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566737	45566737	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:45566737A>G	uc002lda.2	-	1	758	c.742T>C	c.(742-744)TTG>CTG	p.L248L	ZBTB7C_uc002ldb.2_Silent_p.L248L|ZBTB7C_uc010dnu.2_Silent_p.L257L|ZBTB7C_uc010dnv.2_Silent_p.L270L|ZBTB7C_uc010dnw.2_Silent_p.L248L|ZBTB7C_uc010dnx.1_Silent_p.L248L|ZBTB7C_uc010dny.1_Silent_p.L248L|ZBTB7C_uc010dnz.1_Silent_p.L270L|ZBTB7C_uc010dob.1_Silent_p.L248L|ZBTB7C_uc010doc.1_Silent_p.L257L|ZBTB7C_uc010dod.1_Silent_p.L270L|ZBTB7C_uc010doe.1_Silent_p.L248L|ZBTB7C_uc010dof.1_Silent_p.L248L|ZBTB7C_uc010dog.1_Silent_p.L248L|ZBTB7C_uc010doh.1_Silent_p.L257L|ZBTB7C_uc010doi.1_Silent_p.L248L|ZBTB7C_uc010doj.1_Silent_p.L257L|ZBTB7C_uc010dok.1_Silent_p.L297L|ZBTB7C_uc010dol.1_Silent_p.L257L|ZBTB7C_uc010doa.1_Silent_p.L270L|ZBTB7C_uc010don.1_Silent_p.L256L|ZBTB7C_uc010doo.1_Silent_p.L248L|ZBTB7C_uc010dop.1_Silent_p.L248L|ZBTB7C_uc010doq.1_Silent_p.L257L|ZBTB7C_uc010dor.1_Silent_p.L270L|ZBTB7C_uc010dos.1_Silent_p.L248L|ZBTB7C_uc010dot.1_Silent_p.L248L|ZBTB7C_uc010dou.1_Silent_p.L257L|ZBTB7C_uc010dom.1_Silent_p.L257L	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	248						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AATGGAGACAAGGAGGGTCTC	0.612													9	24					0	0	0.004482	0	0
KIAA0427	9811	broad.mit.edu	37	18	46284741	46284741	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:46284741T>A	uc002ldc.2	+	8	1321	c.1036T>A	c.(1036-1038)TCC>ACC	p.S346T	KIAA0427_uc002ldd.2_Missense_Mutation_p.S346T|KIAA0427_uc002lde.3_5'Flank	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	346					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						GCTCCAGTCTTCCAAAGACAG	0.522													111	195					0	0	0.003610	0	0
MYO5B	4645	broad.mit.edu	37	18	47511087	47511087	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:47511087C>T	uc002leb.2	-	8	1234	c.946_splice	c.e8+1	p.G316_splice	MYO5B_uc002lec.1_Splice_Site_p.G315_splice	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB						protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AAGCTCCTTACCGAGGAGTGT	0.552													9	41					0	0	0.008291	0	0
MYO5B	4645	broad.mit.edu	37	18	47563277	47563277	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:47563277C>T	uc002leb.2	-	4	686	c.398G>A	c.(397-399)GGA>GAA	p.G133E	MYO5B_uc002lec.1_Missense_Mutation_p.G132E	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	133	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GTCCATGTCTCCCATGTTTTG	0.478													15	27					0	0	0.007413	0	0
ME2	4200	broad.mit.edu	37	18	48434450	48434450	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:48434450A>G	uc002ley.2	+	3	382	c.126A>G	c.(124-126)TTA>TTG	p.L42L	ME2_uc010dpd.2_Silent_p.L42L	NM_002396	NP_002387	P23368	MAOM_HUMAN	malic enzyme 2, NAD(+)-dependent, mitochondrial	42					malate metabolic process	mitochondrial matrix	electron carrier activity|malate dehydrogenase (decarboxylating) activity|malate dehydrogenase (oxaloacetate-decarboxylating) activity|metal ion binding|NAD binding				0		Colorectal(6;0.0273)|all_epithelial(6;0.118)		Colorectal(21;0.0313)|READ - Rectum adenocarcinoma(32;0.105)|STAD - Stomach adenocarcinoma(97;0.184)	NADH(DB00157)	CATTTACTTTACAAGAACGAC	0.313													7	43					0	0	0.003080	0	0
DCC	1630	broad.mit.edu	37	18	50936947	50936947	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:50936947C>T	uc002lfe.1	+	20	3648	c.3061C>T	c.(3061-3063)CGA>TGA	p.R1021*	DCC_uc010xdr.1_Nonsense_Mutation_p.R849*|DCC_uc010dpf.1_Nonsense_Mutation_p.R656*	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1021	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GTATTACTTTCGAATTCAAGC	0.378													25	43					0	0	0.003330	0	0
STARD6	147323	broad.mit.edu	37	18	51858177	51858177	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:51858177G>A	uc010xdt.1	-	4	320	c.320C>T	c.(319-321)TCC>TTC	p.S107F		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	107	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		GTCTCGAGGGGAAATGGAGCC	0.363													13	31					0	0	0.003163	0	0
CCDC68	80323	broad.mit.edu	37	18	52609970	52609970	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:52609970T>A	uc002lfs.2	-	3	225	c.53A>T	c.(52-54)GAT>GTT	p.D18V	CCDC68_uc002lft.2_Missense_Mutation_p.D18V	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	18										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		GGCAGAATTATCTTCCATCTT	0.388													24	42					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	18	54814936	54814936	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:54814936C>T	uc002lgm.2	+	1	601	c.393C>T	c.(391-393)ATC>ATT	p.I131I						RecName: Full=Protein FAM44C;																		TAAACCACATCTTCAGGCCAC	0.517													4	25					0	0	0.000602	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55024225	55024225	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:55024225C>T	uc002lgn.2	+	3	741	c.384C>T	c.(382-384)CAC>CAT	p.H128H		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	128	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		AACTGATGCACTATGATTATT	0.318													8	59					0	0	0.006214	0	0
CCBE1	147372	broad.mit.edu	37	18	57103257	57103257	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:57103257G>A	uc002lib.2	-	11	1174	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	CCBE1_uc010dpq.2_Silent_p.F97F|CCBE1_uc002lia.2_Silent_p.F221F	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	368					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GAGGTAAAGGGAACTCCTCTG	0.532													46	83					0	0	0.009718	0	0
RNF152	220441	broad.mit.edu	37	18	59483483	59483483	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:59483483C>T	uc002lih.1	-	2	626	c.214G>A	c.(214-216)GAC>AAC	p.D72N		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	72					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				ACCTCCGGGTCGTCCGGGAGC	0.637													5	25					0	0	0.000602	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570341	61570341	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:61570341T>A	uc010xeu.1	+	9	1383	c.1050T>A	c.(1048-1050)TTT>TTA	p.F350L	SERPINB2_uc002ljo.2_Missense_Mutation_p.F350L|SERPINB2_uc010dqh.2_Missense_Mutation_p.F280L|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	350					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	ATGACCTGTTTCTTTCTGAAG	0.517													14	54					0	0	0.002450	0	0
SERPINB8	5271	broad.mit.edu	37	18	61654452	61654452	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:61654452C>T	uc002ljv.2	+	7	1234	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	SERPINB8_uc002lju.2_Silent_p.F355F|SERPINB8_uc010xex.1_Silent_p.F173F	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	355					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				CTTTTCTTTTCTTCATCAGGC	0.512													16	89					0	0	0.008871	0	0
CDH7	1005	broad.mit.edu	37	18	63547807	63547807	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:63547807G>A	uc002ljz.2	+	12	2360	c.2035G>A	c.(2035-2037)GAC>AAC	p.D679N	CDH7_uc002lkb.2_Missense_Mutation_p.D679N	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	679	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CGTCATCCGAGACACCAAGAC	0.473													20	38					0	0	0.008871	0	0
DSEL	92126	broad.mit.edu	37	18	65180052	65180052	+	Silent	SNP	G	A	A	rs149858062		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:65180052G>A	uc002lke.1	-	2	3048	c.1824C>T	c.(1822-1824)GTC>GTT	p.V608V		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	598						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				AGAAGGCACTGACAGAATTTA	0.348													16	16					0	0	0.004990	0	0
RTTN	25914	broad.mit.edu	37	18	67692058	67692058	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr18:67692058G>A	uc002lkp.2	-	44	5918	c.5850C>T	c.(5848-5850)GTC>GTT	p.V1950V	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Silent_p.V1038V|RTTN_uc010dqp.2_Silent_p.V202V	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1950							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				GCAAGACAGGGACAAGGTGAG	0.378													18	30					0	0	0.007413	0	0
CDC34	997	broad.mit.edu	37	19	536311	536311	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:536311A>G	uc002lov.2	+	3	532	c.333A>G	c.(331-333)TCA>TCG	p.S111S		NM_004359	NP_004350	P49427	UB2R1_HUMAN	ubiquitin-conjugating enzyme Cdc34	111					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|negative regulation of cAMP-mediated signaling|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination	cytoplasm|nucleus	ATP binding|protein binding|ubiquitin-protein ligase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCTGCCCTCAGAGAGGTGGA	0.642													5	15					0	0	0.001984	0	0
PCSK4	54760	broad.mit.edu	37	19	1487053	1487053	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:1487053C>T	uc002ltb.1	-	8	929	c.867G>A	c.(865-867)GGG>GGA	p.G289G	PCSK4_uc002lta.2_Silent_p.G101G	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	289	Catalytic (By similarity).				proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGTGCCCAGCCCGCCGCGGC	0.697													8	19					0	0	0.006214	0	0
ATP8B3	148229	broad.mit.edu	37	19	1783131	1783131	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:1783131C>T	uc002ltw.2	-	29	4033	c.3799G>A	c.(3799-3801)GGC>AGC	p.G1267S	ATP8B3_uc002ltv.2_Missense_Mutation_p.G1230S|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1267	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAATTGTGCCCTGAGTGATG	0.562													8	10					0	0	0.006214	0	0
C19orf28	126321	broad.mit.edu	37	19	3547919	3547919	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:3547919G>A	uc002lxz.2	-	4	934	c.764C>T	c.(763-765)CCC>CTC	p.P255L	C19orf28_uc002lxw.2_Missense_Mutation_p.P255L|C19orf28_uc002lxx.2_Missense_Mutation_p.P255L|C19orf28_uc002lxy.2_Missense_Mutation_p.P246L	NM_174983	NP_778148	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform c	255					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCCAACAGGGGGGTGTGCTC	0.716													8	4					0	0	0.004482	0	0
TJP3	27134	broad.mit.edu	37	19	3747981	3747981	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:3747981C>T	uc010xhv.1	+	18	2611	c.2611C>T	c.(2611-2613)CCG>TCG	p.P871S	TJP3_uc010xhs.1_Missense_Mutation_p.P838S|TJP3_uc010xht.1_Missense_Mutation_p.P802S|TJP3_uc010xhu.1_Missense_Mutation_p.P847S|TJP3_uc010xhw.1_Missense_Mutation_p.P857S	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	852						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		TGATGAGCCCCCGGCTCCAGC	0.697													7	10					0	0	0.004482	0	0
ATCAY	85300	broad.mit.edu	37	19	3907802	3907802	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:3907802G>A	uc002lyy.3	+	5	859	c.429G>A	c.(427-429)ACG>ACA	p.T143T	ATCAY_uc010xhz.1_Silent_p.T149T|ATCAY_uc010dts.2_5'Flank	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	143					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		ACGGCACGACGGAGGACGGCA	0.637													27	47					0	0	0.002096	0	0
CREB3L3	84699	broad.mit.edu	37	19	4171958	4171958	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:4171958G>A	uc002lzl.2	+	10	1494	c.1378G>A	c.(1378-1380)GAG>AAG	p.E460K	CREB3L3_uc002lzm.2_Missense_Mutation_p.E450K|CREB3L3_uc010xib.1_Missense_Mutation_p.E449K|CREB3L3_uc010xic.1_3'UTR	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	460	Lumenal (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCGGGAGACGAGCTGTGAGC	0.701													4	5					0	0	0.000602	0	0
FEM1A	55527	broad.mit.edu	37	19	4792693	4792693	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:4792693C>T	uc002mbf.2	+	1	966	c.827C>T	c.(826-828)TCC>TTC	p.S276F	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	276					regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		TGCAGCTCCTCCCCAGAGGAA	0.647													10	48					0	0	0.000978	0	0
FEM1A	55527	broad.mit.edu	37	19	4793084	4793084	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:4793084C>T	uc002mbf.2	+	1	1357	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	406	TPR 2.				regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		CGGGCAATTTCGAGCGCTGCA	0.622													29	55					0	0	0.008361	0	0
GTF2F1	2962	broad.mit.edu	37	19	6389464	6389464	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:6389464G>A	uc002meq.2	-	4	602	c.317C>T	c.(316-318)TCA>TTA	p.S106L	GTF2F1_uc010xjb.1_5'Flank|GTF2F1_uc010xjc.1_Missense_Mutation_p.S78L	NM_002096	NP_002087	P35269	T2FA_HUMAN	general transcription factor IIF, polypeptide 1,	106					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|response to virus|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cell junction|transcription factor TFIIF complex	catalytic activity|DNA binding|phosphatase activator activity|transcription coactivator activity|transcription factor binding				0						CTTCCTGCCTGATTTGCCGTT	0.612													44	77					0	0	0.002852	0	0
DENND1C	79958	broad.mit.edu	37	19	6475321	6475321	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:6475321G>A	uc002mfe.2	-	14	1109	c.1017C>T	c.(1015-1017)CTC>CTT	p.L339L	DENND1C_uc002mfb.2_5'UTR|DENND1C_uc002mfc.2_5'UTR|DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Silent_p.L295L	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	339	dDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						ACCCCCCGAAGAGCAGGGCCT	0.652													8	17					0	0	0.003080	0	0
C3	718	broad.mit.edu	37	19	6709694	6709694	+	Splice_Site	SNP	C	T	T	rs111861067		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:6709694C>T	uc002mfm.2	-	14	1907	c.1845_splice	c.e14+1	p.K615_splice		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor						complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CTGGCCCTTACCTTACTCTGC	0.627													54	159					0	0	0.003610	0	0
SH2D3A	10045	broad.mit.edu	37	19	6760924	6760924	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:6760924C>T	uc002mft.2	-	3	338	c.144G>A	c.(142-144)GTG>GTA	p.V48V	SH2D3A_uc010xjg.1_Intron	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	48	SH2.				JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						GGCAGGAGATCACGGGGTTGC	0.642													13	31					0	0	0.003163	0	0
EMR1	2015	broad.mit.edu	37	19	6924812	6924812	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:6924812C>T	uc002mfw.2	+	15	1953	c.1915C>T	c.(1915-1917)CTG>TTG	p.L639L	EMR1_uc010dvc.2_Intron|EMR1_uc010dvb.2_Silent_p.L587L|EMR1_uc010xji.1_Silent_p.L498L|EMR1_uc010xjj.1_Silent_p.L462L	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	639	Helical; Name=2; (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CTACCTCCACCTGCACCTCTG	0.552													19	40					0	0	0.008871	0	0
PNPLA6	10908	broad.mit.edu	37	19	7625908	7625908	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:7625908C>T	uc010xjq.1	+	32	4050	c.3855C>T	c.(3853-3855)GCC>GCT	p.A1285A	PNPLA6_uc002mgq.1_Silent_p.A1237A|PNPLA6_uc010xjp.1_Silent_p.A1210A|PNPLA6_uc002mgr.1_Silent_p.A1237A|PNPLA6_uc002mgs.2_Silent_p.A1275A|PNPLA6_uc002mgt.1_RNA	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	1276	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						AGGTGCTTGCCTTCCCAAGCT	0.637													4	16					0	0	0.000602	0	0
CCL25	6370	broad.mit.edu	37	19	8122782	8122782	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:8122782C>T	uc002mjd.2	+	4	423	c.423C>T	c.(421-423)TCC>TCT	p.S141S	CCL25_uc002mjc.3_Silent_p.S140S|CCL25_uc010dvy.1_3'UTR	NM_005624	NP_005615	O15444	CCL25_HUMAN	small inducible cytokine A25 precursor	141					chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response	extracellular space|soluble fraction	CCR10 chemokine receptor binding|chemokine activity|hormone activity				0						ggaatgtctccctcctgatat	0													38	81					0	0	0.002522	0	0
FBN3	84467	broad.mit.edu	37	19	8175972	8175973	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:8175972_8175973CA>AG	uc002mjf.2	-	32	4200_4201	c.4179_4180TG>CT	c.(4177-4182)TTTGAC>TTCTAC	p.D1394Y		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1394	EGF-like 21; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TCGGTGGGGTCAAAGCCCATCT	0.653													8	26					0	0	0.004672	0	0
MYO1F	4542	broad.mit.edu	37	19	8620543	8620543	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:8620543G>A	uc002mkg.2	-	2	255	c.141C>T	c.(139-141)TTC>TTT	p.F47F	MYO1F_uc002mkh.2_Silent_p.F47F|MYO1F_uc010xkf.1_Silent_p.F47F	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	47	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CCCAGGGTACGAAGATGTAGT	0.617													26	63					0	0	0.002445	0	0
ACTL9	284382	broad.mit.edu	37	19	8808763	8808763	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:8808763A>G	uc002mkl.2	-	1	410	c.289T>C	c.(289-291)TTC>CTC	p.F97L		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	97						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						TCGCCGATGAACGTCTGCAGC	0.692													6	22					0	0	0.001984	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953474	8953474	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:8953474G>A	uc002mko.2	+	1	206	c.120G>A	c.(118-120)ACG>ACA	p.T40T		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	40	Transcription repressor.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GGCCAGTAACGAGAATTACAC	0.507													18	46					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	8973575	8973575	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:8973575G>A	uc002mkp.2	-	77	42945	c.42741C>T	c.(42739-42741)TTC>TTT	p.F14247F	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.F1047F|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCAGAAGCGGAATGTGTCAT	0.507													5	9					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	8996489	8996489	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:8996489C>T	uc002mkp.2	-	61	41287	c.41083G>A	c.(41083-41085)GAA>AAA	p.E13695K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.E512K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13697	Extracellular (Potential).|SEA 11.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCATCCTTTTCAGGCCTGGAG	0.547													26	38					0	0	0.003330	0	0
MUC16	94025	broad.mit.edu	37	19	9003586	9003586	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9003586C>T	uc002mkp.2	-	49	40258	c.40054G>A	c.(40054-40056)GAG>AAG	p.E13352K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.E169K|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13354	Extracellular (Potential).|SEA 9.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGACCCTCTCCGTGGTGTTG	0.572													87	169					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9049121	9049121	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9049121C>T	uc002mkp.2	-	5	32714	c.32510G>A	c.(32509-32511)TGG>TAG	p.W10837*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10839	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAAGTTGTCCAGGGAACTGT	0.473													39	95					0	0	0.004878	0	0
MUC16	94025	broad.mit.edu	37	19	9054339	9054339	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9054339C>T	uc002mkp.2	-	4	31487	c.31283G>A	c.(31282-31284)GGC>GAC	p.G10428D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10430	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCATAATGCCATCAGTTCC	0.463													8	18					0	0	0.004482	0	0
MUC16	94025	broad.mit.edu	37	19	9057040	9057040	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9057040G>A	uc002mkp.2	-	3	30610	c.30406C>T	c.(30406-30408)CCC>TCC	p.P10136S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10138	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGGAAGAGGGAGTACCCACT	0.468													16	33					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9058908	9058908	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9058908T>G	uc002mkp.2	-	3	28742	c.28538A>C	c.(28537-28539)CAC>CCC	p.H9513P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9515	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCAAAAACGTGAATTGCCTC	0.483													44	87					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9060306	9060306	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9060306C>T	uc002mkp.2	-	3	27344	c.27140G>A	c.(27139-27141)AGC>AAC	p.S9047N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9049	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGATCAGGGCTAGGTCCTCT	0.493													17	51					0	0	0.004007	0	0
MUC16	94025	broad.mit.edu	37	19	9062673	9062673	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9062673G>A	uc002mkp.2	-	3	24977	c.24773C>T	c.(24772-24774)TCC>TTC	p.S8258F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8260	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCACAGAGGATTGACTAGG	0.502													23	50					0	0	0.002780	0	0
MUC16	94025	broad.mit.edu	37	19	9064721	9064721	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9064721G>A	uc002mkp.2	-	3	22929	c.22725C>T	c.(22723-22725)TCC>TCT	p.S7575S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7577	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTCTGTCCTGGAGACCTCAG	0.502													36	81					0	0	0.004878	0	0
MUC16	94025	broad.mit.edu	37	19	9065788	9065788	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9065788C>T	uc002mkp.2	-	3	21862	c.21658G>A	c.(21658-21660)GAT>AAT	p.D7220N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7222	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACAGTTGTATCCTCCTGGGTG	0.488													70	130					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9068117	9068117	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9068117C>T	uc002mkp.2	-	3	19533	c.19329G>A	c.(19327-19329)AGG>AGA	p.R6443R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6445	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGCAATGGTCCTTTCTTCGG	0.522													72	133					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9070704	9070704	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9070704G>A	uc002mkp.2	-	3	16946	c.16742C>T	c.(16741-16743)CCC>CTC	p.P5581L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5583	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGTCCCAGGGAAGGATACC	0.517													54	139					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9074177	9074177	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9074177A>T	uc002mkp.2	-	3	13473	c.13269T>A	c.(13267-13269)TTT>TTA	p.F4423L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4425	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGATTGCATAAAATCTGGAG	0.493													54	121					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9074179	9074179	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9074179A>T	uc002mkp.2	-	3	13471	c.13267T>A	c.(13267-13269)TTT>ATT	p.F4423I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4425	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATTGCATAAAATCTGGAGTC	0.498													56	124					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9076497	9076497	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9076497G>A	uc002mkp.2	-	3	11153	c.10949C>T	c.(10948-10950)TCA>TTA	p.S3650L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3651	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTTACAGCTGAAGCATCAGA	0.463													24	43					0	0	0.003330	0	0
MUC16	94025	broad.mit.edu	37	19	9082363	9082363	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9082363G>A	uc002mkp.2	-	1	9656	c.9452C>T	c.(9451-9453)CCT>CTT	p.P3151L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3152	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCTTGGCAGGAACTGAAAT	0.443													22	46					0	0	0.002780	0	0
MUC16	94025	broad.mit.edu	37	19	9086647	9086647	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9086647A>C	uc002mkp.2	-	1	5372	c.5168T>G	c.(5167-5169)CTG>CGG	p.L1723R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1723	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTGTGTTCAGCCTTGGGCT	0.488													4	118					0	0	0.009096	0	0
ZNF560	147741	broad.mit.edu	37	19	9577542	9577542	+	Missense_Mutation	SNP	C	T	T	rs148650284		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9577542C>T	uc002mlp.1	-	10	2291	c.2081G>A	c.(2080-2082)CGA>CAA	p.R694Q	ZNF560_uc010dwr.1_Missense_Mutation_p.R588Q	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	694					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CATGGAATTTCGAAAGGAATT	0.378													59	94					0	0	0.003610	0	0
ZNF560	147741	broad.mit.edu	37	19	9577649	9577650	+	Nonsense_Mutation	DNP	AC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9577649_9577650AC>TT	uc002mlp.1	-	10	2183_2184	c.1973_1974GT>AA	c.(1972-1974)TGT>TAA	p.C658*	ZNF560_uc010dwr.1_Nonsense_Mutation_p.C552*	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	658	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CACATGCATTACATTTATAGGG	0.381													26	64					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	19	9801391	9801391	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:9801391G>A	uc010xkx.1	-	3	1099	c.476C>T	c.(475-477)TCC>TTC	p.S159F						RecName: Full=Zinc finger protein 562;																		AACATTAAAGGATGAGGAATT	0.348													14	33					0	0	0.001855	0	0
RAVER1	125950	broad.mit.edu	37	19	10431579	10431579	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:10431579G>A	uc002moa.2	-	9	1653	c.1573C>T	c.(1573-1575)CCC>TCC	p.P525S	RAVER1_uc002mnz.2_5'Flank	NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	525						cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			TTCAGGTAGGGATTCAGGGGA	0.701													6	28					0	0	0.004482	0	0
PDE4A	5141	broad.mit.edu	37	19	10577709	10577709	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:10577709C>T	uc002moj.2	+	15	2181	c.2073C>T	c.(2071-2073)CCC>CCT	p.P691P	PDE4A_uc002mok.2_Silent_p.P665P|PDE4A_uc002mol.2_Silent_p.P630P|PDE4A_uc002mom.2_Silent_p.P452P|PDE4A_uc002mon.2_Silent_p.P146P|PDE4A_uc002moo.2_3'UTR	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	691	Catalytic.				signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	CTCCGCCACCCGAGGAGGAGT	0.607													11	40					0	0	0.000978	0	0
PDE4A	5141	broad.mit.edu	37	19	10578097	10578097	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:10578097C>T	uc002moj.2	+	15	2569	c.2461C>T	c.(2461-2463)CTC>TTC	p.L821F	PDE4A_uc002mok.2_Missense_Mutation_p.L795F|PDE4A_uc002mol.2_Missense_Mutation_p.L760F|PDE4A_uc002mom.2_Missense_Mutation_p.L582F|PDE4A_uc002mon.2_Missense_Mutation_p.L276F|PDE4A_uc002moo.2_3'UTR	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	821					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	AAGCCCCCTTCTCCCTGCTTG	0.662													37	96					0	0	0.006230	0	0
ILF3	3609	broad.mit.edu	37	19	10792728	10792729	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:10792728_10792729CC>TT	uc002mpn.2	+	12	1557_1558	c.1240_1241CC>TT	c.(1240-1242)CCA>TTA	p.P414L	ILF3_uc002mpm.2_Missense_Mutation_p.P414L|ILF3_uc002mpl.2_Missense_Mutation_p.P414L|ILF3_uc002mpk.2_Missense_Mutation_p.P414L|ILF3_uc010xli.1_Missense_Mutation_p.P12L|ILF3_uc002mpo.2_Missense_Mutation_p.P414L|ILF3_uc002mpp.2_Missense_Mutation_p.P235L	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	414	DRBM 1.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			CCAGCTGAAGCCAGGGCTGCAG	0.574													17	39					0	0	0.004672	0	0
TMEM205	374882	broad.mit.edu	37	19	11453736	11453737	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:11453736_11453737GG>AA	uc002mrb.2	-	4	512_513	c.324_325CC>TT	c.(322-327)CCCCGC>CCTTGC	p.R109C	TMEM205_uc002mra.2_Missense_Mutation_p.R109C|TMEM205_uc002mqz.2_Missense_Mutation_p.R109C|TMEM205_uc002mrc.2_Missense_Mutation_p.R109C	NM_001145416	NP_001138888	Q6UW68	TM205_HUMAN	transmembrane protein 205	109						integral to membrane					0						GCTGTGGTGCGGGGTTCCAGCC	0.653													22	59					0	0	0.004672	0	0
ELAVL3	1995	broad.mit.edu	37	19	11569055	11569055	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:11569055C>T	uc002mry.1	-	5	914	c.534G>A	c.(532-534)GAG>GAA	p.E178E	ELAVL3_uc002mrx.1_Silent_p.E178E	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	178	RRM 2.				cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						CCTCTTCGGCCTCAATCCTCT	0.592													11	33					0	0	0.008291	0	0
ZNF763	284390	broad.mit.edu	37	19	12089398	12089398	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:12089398G>A	uc002msw.2	+	4	814	c.659G>A	c.(658-660)AGA>AAA	p.R220K	ZNF763_uc010xmf.1_Missense_Mutation_p.R240K|ZNF763_uc002msv.2_Missense_Mutation_p.R223K|ZNF763_uc010xmg.1_Missense_Mutation_p.R98K	NM_001012753	NP_001012771	Q0D2J5	ZN763_HUMAN	zinc finger protein 763	220	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						ATCCATGAAAGAACTCACACT	0.383													28	49					0	0	0.004656	0	0
ZNF433	163059	broad.mit.edu	37	19	12126465	12126465	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:12126465G>A	uc002msy.1	-	4	1388	c.1217C>T	c.(1216-1218)TCC>TTC	p.S406F	uc002msx.1_Intron|ZNF433_uc002msz.1_Missense_Mutation_p.S371F	NM_001080411	NP_001073880	Q8N7K0	ZN433_HUMAN	zinc finger protein 433	406	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAGGAACTGGAAGAATTAAA	0.408													30	60					0	0	0.008361	0	0
DNASE2	1777	broad.mit.edu	37	19	12991617	12991617	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:12991617C>A	uc002mvn.1	-	3	491	c.345G>T	c.(343-345)AAG>AAT	p.K115N	DNASE2_uc010xmr.1_Missense_Mutation_p.K115N	NM_001375	NP_001366	O00115	DNS2A_HUMAN	deoxyribonuclease II, lysosomal precursor	115					apoptosis	lysosome	deoxyribonuclease II activity|DNA binding|protein binding				0						AGGCCTCACCCTTCGTGTGCC	0.607								Direct_reversal_of_damage					48	114					1.10885e-35	1.24374e-35	0.003610	1	0
GCDH	2639	broad.mit.edu	37	19	13007120	13007120	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:13007120C>T	uc002mvq.2	+	8	814	c.737C>T	c.(736-738)TCG>TTG	p.S246L	GCDH_uc010xms.1_Missense_Mutation_p.S213L|GCDH_uc002mvp.2_Missense_Mutation_p.S246L|GCDH_uc010xmt.1_Missense_Mutation_p.S80L|GCDH_uc010xmu.1_Missense_Mutation_p.S202L	NM_000159	NP_000150	Q92947	GCDH_HUMAN	glutaryl-Coenzyme A dehydrogenase isoform a	246					lysine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|glutaryl-CoA dehydrogenase activity|protein binding				0						CGGGGTCTCTCGGCCCCCAGG	0.607													22	47					0	0	0.002299	0	0
CACNA1A	773	broad.mit.edu	37	19	13414615	13414615	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:13414615G>A	uc010dze.2	-	16	2309	c.2073C>T	c.(2071-2073)TCC>TCT	p.S691S	CACNA1A_uc010dzc.2_Silent_p.S216S|CACNA1A_uc002mwy.3_Silent_p.S690S|CACNA1A_uc010xne.1_Silent_p.S216S	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	691	II.|Helical; Name=S6 of repeat II; (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TGAAATAGATGGAGAACACCA	0.567													61	130					0	0	0.003610	0	0
ZNF333	84449	broad.mit.edu	37	19	14826950	14826950	+	Silent	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:14826950T>C	uc002mzn.2	+	9	761	c.627T>C	c.(625-627)GCT>GCC	p.A209A	ZNF333_uc002mzk.3_Silent_p.A100A|ZNF333_uc010dzr.1_RNA	NM_032433	NP_115809	Q96JL9	ZN333_HUMAN	zinc finger protein 333	209	KRAB 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CAGATGTGGCTGTGGTGTTCA	0.557													51	87					0	0	0.003610	0	0
OR7C2	26658	broad.mit.edu	37	19	15053166	15053167	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15053166_15053167AC>TT	uc010xoc.1	+	1	866_867	c.866_867AC>TT	c.(865-867)TAC>TTT	p.Y289F		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					CCCTTCATCTACAGCCTGAGGA	0.54													26	73					0	0	0.004672	0	0
CASP14	23581	broad.mit.edu	37	19	15164410	15164410	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15164410G>A	uc010dzv.1	+	3	453	c.145G>A	c.(145-147)GAA>AAA	p.E49K	CASP14_uc002naf.2_Missense_Mutation_p.E49K	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	49					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						GCTGAGATTCGAAAGCACCAT	0.552													25	76					0	0	0.003954	0	0
RASAL3	64926	broad.mit.edu	37	19	15569364	15569364	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15569364G>A	uc002nbe.2	-	7	851	c.765C>T	c.(763-765)CTC>CTT	p.L255L	RASAL3_uc010eaa.1_5'Flank	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	255	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						GCTCCCCCAGGAGGCTGGGGT	0.632													8	20					0	0	0.004482	0	0
CYP4F3	4051	broad.mit.edu	37	19	15760723	15760723	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15760723G>A	uc002nbj.2	+	7	698	c.648G>A	c.(646-648)GAG>GAA	p.E216E	CYP4F3_uc010xok.1_Silent_p.E216E|CYP4F3_uc010xol.1_Silent_p.E216E|CYP4F3_uc010xom.1_Silent_p.E67E|CYP4F3_uc002nbk.2_Silent_p.E216E|CYP4F3_uc010xon.1_5'Flank	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	216					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						TATCCTGCAGGAAGCCCAGTG	0.493													52	126					0	0	0.003610	0	0
CYP4F3	4051	broad.mit.edu	37	19	15770061	15770061	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15770061G>A	uc002nbj.2	+	13	1479	c.1429G>A	c.(1429-1431)GAG>AAG	p.E477K	CYP4F3_uc010xok.1_Missense_Mutation_p.E477K|CYP4F3_uc010xol.1_Missense_Mutation_p.E477K|CYP4F3_uc010xom.1_Missense_Mutation_p.E328K|CYP4F3_uc002nbk.2_Missense_Mutation_p.E477K|CYP4F3_uc010xon.1_Missense_Mutation_p.E187K	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	477					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						CGCGATGGCGGAGATGAAGGT	0.677													6	22					0	0	0.001168	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807310	15807310	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15807310C>T	uc002nbl.2	+	12	1446	c.1385C>T	c.(1384-1386)TCC>TTC	p.S462F		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					ATTCCTTTCTCCGCAGGGCCC	0.562													38	76					0	0	0.006999	0	0
OR10H3	26532	broad.mit.edu	37	19	15852893	15852893	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15852893C>T	uc010xoq.1	+	1	691	c.691C>T	c.(691-693)CCT>TCT	p.P231S		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTGAGGATTCCTTCTGCTGA	0.502													59	128					0	0	0.003610	0	0
CYP4F2	8529	broad.mit.edu	37	19	15989715	15989715	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15989715C>T	uc002nbs.1	-	13	1479	c.1429G>A	c.(1429-1431)GAG>AAG	p.E477K	CYP4F2_uc010xot.1_Missense_Mutation_p.E328K	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	477					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						ACCTTCATCTCCGCCATCGCG	0.677													4	42					0	0	0.000602	0	0
CYP4F2	8529	broad.mit.edu	37	19	15990703	15990703	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:15990703C>T	uc002nbs.1	-	10	1170	c.1120G>A	c.(1120-1122)GAC>AAC	p.D374N	CYP4F2_uc010xot.1_Missense_Mutation_p.D225N	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	374					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						TGGGCCAGGTCGTCCCTAAGG	0.557													33	93					0	0	0.005524	0	0
TPM4	7171	broad.mit.edu	37	19	16178477	16178477	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:16178477A>G	uc002ndi.2	+	1	161	c.43A>G	c.(43-45)AAG>GAG	p.K15E		NM_001145160	NP_001138632	P67936	TPM4_HUMAN	tropomyosin 4 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cellular component movement|muscle filament sliding|response to oxidative stress	cytosol|muscle thin filament tropomyosin|stress fiber	actin binding|calcium ion binding|structural constituent of muscle		TPM4/ALK(12)	soft_tissue(10)|haematopoietic_and_lymphoid_tissue(2)|breast(1)	13						GAAGTTGGACAAGGAGAATGC	0.667			T	ALK	ALCL								13	46					0	0	0.004007	0	0
NWD1	284434	broad.mit.edu	37	19	16918651	16918651	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:16918651G>T	uc002neu.3	+	18	4413	c.3991G>T	c.(3991-3993)GAC>TAC	p.D1331Y	NWD1_uc002net.3_Missense_Mutation_p.D1196Y|NWD1_uc002nev.3_Missense_Mutation_p.D1125Y			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1331							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CACCTCCGGGGACCCCTGCCC	0.607													26	52					7.26314e-15	8.10332e-15	0.007291	1	0
FAM125A	93343	broad.mit.edu	37	19	17533260	17533260	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:17533260C>T	uc002ngo.1	+	4	439	c.406C>T	c.(406-408)CGA>TGA	p.R136*	FAM125A_uc002ngp.1_Nonsense_Mutation_p.R44*|FAM125A_uc002ngq.1_Nonsense_Mutation_p.R32*	NM_138401	NP_612410	Q96EY5	F125A_HUMAN	family with sequence similarity 125, member A	136	MABP.				protein transport	late endosome membrane|microtubule organizing center|nucleus	SH3 domain binding				0						TGGATACCTTCGAATAGGGTA	0.582													5	36					0	0	0.000602	0	0
UNC13A	23025	broad.mit.edu	37	19	17735681	17735681	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:17735681G>A	uc002nhd.2	-	35	4418	c.4418C>T	c.(4417-4419)ACC>ATC	p.T1473I		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1385	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TTTCTCCATGGTGTTCATAAC	0.602													26	18					0	0	0.004656	0	0
B3GNT3	10331	broad.mit.edu	37	19	17922701	17922701	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:17922701G>A	uc002nhk.1	+	3	974	c.889G>A	c.(889-891)GAT>AAT	p.D297N	B3GNT3_uc002nhl.1_Missense_Mutation_p.D297N|B3GNT3_uc010ebd.1_Missense_Mutation_p.D297N|B3GNT3_uc010ebe.1_Missense_Mutation_p.D297N	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	297	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						CCCCATTGATGATGTCTTCCT	0.627													33	95					0	0	0.004289	0	0
SLC5A5	6528	broad.mit.edu	37	19	18001774	18001774	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:18001774G>A	uc002nhr.3	+	14	2078	c.1731G>A	c.(1729-1731)AAG>AAA	p.K577K		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	577	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TGGCCCCCAAGGAAGAAGTGG	0.602													24	69					0	0	0.003954	0	0
IL12RB1	3594	broad.mit.edu	37	19	18193031	18193031	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:18193031G>A	uc002nhw.1	-	3	232	c.168C>T	c.(166-168)TCC>TCT	p.S56S	IL12RB1_uc010xqb.1_Silent_p.S56S|IL12RB1_uc002nhx.1_Silent_p.S96S|IL12RB1_uc002nhy.2_Silent_p.S56S	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	56	Extracellular (Potential).|Fibronectin type-III 1.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						AACGATCACTGGATATCCGAT	0.597													11	14					0	0	0.000978	0	0
PIK3R2	5296	broad.mit.edu	37	19	18274135	18274135	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:18274135G>T	uc002nia.1	+	11	1865	c.1353G>T	c.(1351-1353)CAG>CAT	p.Q451H	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	451					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						TCTATCACCAGCAGTACCAGG	0.567													18	37					1.02788e-11	1.14461e-11	0.004990	1	0
CRLF1	9244	broad.mit.edu	37	19	18710608	18710608	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:18710608G>A	uc010ebt.1	-	2	358	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	55	Ig-like C2-type.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						GGCCAGCAGGGAGGAGCCGAT	0.677													10	13					0	0	0.006214	0	0
UPF1	5976	broad.mit.edu	37	19	18971235	18971235	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:18971235C>T	uc002nkg.2	+	16	2596	c.2321C>T	c.(2320-2322)TCC>TTC	p.S774F	UPF1_uc002nkf.2_Missense_Mutation_p.S763F|UPF1_uc002nkh.2_Missense_Mutation_p.S18F	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	774					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TCGGGCACCTCCTACCTGAAC	0.547													37	90					0	0	0.007835	0	0
NCAN	1463	broad.mit.edu	37	19	19338458	19338458	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:19338458G>A	uc002nlz.2	+	8	2128	c.2029G>A	c.(2029-2031)GTG>ATG	p.V677M	NCAN_uc010ecc.1_Missense_Mutation_p.V241M	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	677					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			AGAGACCAAGGTGTATTCCCT	0.617													40	82					0	0	0.006999	0	0
SF4	57794	broad.mit.edu	37	19	19416738	19416738	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:19416738G>A	uc002nmh.2	-	4	460	c.458C>T	c.(457-459)CCC>CTC	p.P153L	SF4_uc002nmg.2_5'Flank|SF4_uc002nmi.2_5'UTR|SF4_uc002nmj.2_5'UTR|SF4_uc010xqr.1_RNA|SF4_uc010xqs.1_RNA	NM_172231	NP_757386	Q8IWZ8	SUGP1_HUMAN	splicing factor 4	153					nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding				0						GTGCGCCACGGGCAGCTGCTT	0.652													16	42					0	0	0.004990	0	0
CILP2	148113	broad.mit.edu	37	19	19655734	19655734	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:19655734C>T	uc002nmv.3	+	8	2465	c.2380C>T	c.(2380-2382)CCC>TCC	p.P794S	CILP2_uc002nmw.3_Missense_Mutation_p.P800S	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	794						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CGCCTGCCTCCCCGCCTTCTG	0.746													3	16					0	0	0.009096	0	0
ZNF100	163227	broad.mit.edu	37	19	21910166	21910166	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:21910166G>A	uc002nqi.2	-	5	1147	c.948C>T	c.(946-948)CCC>CCT	p.P316P	ZNF100_uc002nqh.2_Silent_p.P252P	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	316					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TACATTTGTAGGGTTTCACTC	0.393													18	36					0	0	0.007413	0	0
ZNF676	163223	broad.mit.edu	37	19	22363955	22363955	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:22363955C>T	uc002nqs.1	-	3	882	c.564G>A	c.(562-564)AAG>AAA	p.K188K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	188	C2H2-type 1; degenerate.			TLTYYKSI -> NLMEHKRV (in Ref. 2; BAC05174).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TATGAATACTCTTATAATAAG	0.343													23	41					0	0	0.002780	0	0
ZNF99	7652	broad.mit.edu	37	19	22939518	22939518	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:22939518C>T	uc010xrh.1	-	7	2653	c.2653G>A	c.(2653-2655)GAG>AAG	p.E885K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TACGGTTTCTCCCCAGTATGA	0.348													16	41					0	0	0.003163	0	0
ZNF99	7652	broad.mit.edu	37	19	22940058	22940058	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:22940058G>A	uc010xrh.1	-	6	2273	c.2273C>T	c.(2272-2274)TCC>TTC	p.S758F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAGGGTTGAGGAATTGTTAAA	0.348													13	34					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	19	24102058	24102058	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:24102058C>T	uc002nrp.1	-	3		c.1410G>A			uc010eda.1_Intron					Homo sapiens cDNA FLJ43698 fis, clone TCERX2000998.																		TGGATAATTTCAGTCCCTCTT	0.303													6	11					0	0	0.001168	0	0
LOC100101266	100101266	broad.mit.edu	37	19	24345971	24345972	+	RNA	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:24345971_24345972GG>AA	uc010edb.1	-	1		c.278_279CC>TT				NR_003603				Homo sapiens hepatitis A virus cellular receptor 1 pseudogene (LOC100101266), non-coding RNA.												0						TATAGTCAAAGGGACATCCCTT	0.441													124	285					0	0	0.004672	0	0
ZNF536	9745	broad.mit.edu	37	19	31039043	31039043	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:31039043G>A	uc002nsu.1	+	4	2655	c.2517G>A	c.(2515-2517)AGG>AGA	p.R839R	ZNF536_uc010edd.1_Silent_p.R839R	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	839					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACATCCTGAGGGGGGCCTTCA	0.582													38	75					0	0	0.005524	0	0
DPY19L3	147991	broad.mit.edu	37	19	32927424	32927424	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:32927424T>G	uc002ntg.2	+	5	577	c.401T>G	c.(400-402)ATT>AGT	p.I134S	DPY19L3_uc002nth.1_Missense_Mutation_p.I134S|DPY19L3_uc002nti.1_5'Flank	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	134						integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					CGAATGAATATTTACCAAGAG	0.303													39	79					0	0	0.006230	0	0
SLC7A9	11136	broad.mit.edu	37	19	33324075	33324075	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:33324075C>T	uc002ntv.3	-	12	1496	c.1379G>A	c.(1378-1380)GGA>GAA	p.G460E	SLC7A9_uc002ntt.3_RNA|SLC7A9_uc002ntu.3_Missense_Mutation_p.G460E|SLC7A9_uc002ntw.3_Missense_Mutation_p.G251E	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	460	Cytoplasmic (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	CTGAGCCCATCCAAACTTGTA	0.507													30	74					0	0	0.008361	0	0
Unknown	0	broad.mit.edu	37	19	34583966	34583966	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:34583966C>T	uc002nuz.2	-	1	248	c.196G>A	c.(196-198)GGA>AGA	p.G66R						full-length cDNA clone CS0DE007YF24 of Placenta of Homo sapiens (human).																		TCCATAAATCCAGTAGGGTAG	0.438													4	13					0	0	0.009096	0	0
KIAA0355	9710	broad.mit.edu	37	19	34838893	34838893	+	Missense_Mutation	SNP	C	T	T	rs138673599		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:34838893C>T	uc002nvd.3	+	11	3492	c.2633C>T	c.(2632-2634)CCG>CTG	p.P878L		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	878										ovary(1)	1	Esophageal squamous(110;0.162)					GGCAACTGGCCGCCTATGGAT	0.637													16	29					0	0	0.004007	0	0
LSR	51599	broad.mit.edu	37	19	35741242	35741242	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:35741242C>T	uc002nyl.2	+	2	501	c.278C>T	c.(277-279)ACC>ATC	p.T93I	LSR_uc002nym.2_Missense_Mutation_p.T93I|LSR_uc002nyn.2_Missense_Mutation_p.T93I|LSR_uc002nyo.2_Missense_Mutation_p.T93I|LSR_uc010xsr.1_Missense_Mutation_p.T93I|LSR_uc002nyp.2_Missense_Mutation_p.T56I	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	93	Extracellular (Potential).|Ig-like V-type.				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			ATCCAGGTGACCGTGTCCAAC	0.612													72	226					0	0	0.003610	0	0
MLL4	9757	broad.mit.edu	37	19	36223782	36223782	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:36223782C>T	uc010eei.2	+	29	6332	c.6332C>T	c.(6331-6333)TCG>TTG	p.S2111L		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2111					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GACCTGCCATCGGAAATTGTG	0.667													4	21					0	0	0.000602	0	0
APLP1	333	broad.mit.edu	37	19	36364555	36364555	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:36364555G>A	uc002oce.2	+	8	1134	c.996G>A	c.(994-996)TGG>TGA	p.W332*	APLP1_uc010xsz.1_Nonsense_Mutation_p.W293*|APLP1_uc002ocf.2_Nonsense_Mutation_p.W332*|APLP1_uc002ocg.2_Nonsense_Mutation_p.W235*|APLP1_uc010xta.1_Nonsense_Mutation_p.W326*	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	332	Heparin-binding (By similarity).|Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCGTGAATGGGCCATGGCAG	0.562													14	36					0	0	0.004990	0	0
THAP8	199745	broad.mit.edu	37	19	36530863	36530864	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:36530863_36530864GG>AA	uc002oda.1	-	2	803_804	c.258_259CC>TT	c.(256-261)TCCCGG>TCTTGG	p.R87W	uc002ocy.2_Intron|THAP8_uc010xtb.1_Missense_Mutation_p.R44W|THAP8_uc010xtc.1_Intron	NM_152658	NP_689871	Q8NA92	THAP8_HUMAN	THAP domain containing 8	87							DNA binding|metal ion binding				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GGTGGTCCCCGGGAGAAGATGG	0.629													15	49					0	0	0.004672	0	0
ZNF529	57711	broad.mit.edu	37	19	37038114	37038114	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:37038114G>A	uc002oeh.3	-	5	1548	c.1346C>T	c.(1345-1347)CCT>CTT	p.P449L	ZNF529_uc010xth.1_Missense_Mutation_p.P449L|ZNF529_uc010xti.1_Missense_Mutation_p.P431L|ZNF529_uc002oeg.3_Missense_Mutation_p.P344L	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	416					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					ACATTCATAAGGTTTTTGACC	0.358													30	45					0	0	0.002445	0	0
ZNF829	374899	broad.mit.edu	37	19	37382511	37382511	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:37382511A>C	uc002ofa.1	-	6	1544	c.1182T>G	c.(1180-1182)AAT>AAG	p.N394K	ZNF345_uc002oez.2_Intron	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	394	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GTCGAGTAAGATTTGAGCCTT	0.403													20	24					0	0	0.002780	0	0
ZNF420	147923	broad.mit.edu	37	19	37618294	37618294	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:37618294C>T	uc002ofl.2	+	5	616	c.401C>T	c.(400-402)TCT>TTT	p.S134F		NM_144689	NP_653290	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	134					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGATGTCATTCTACTGAGAAA	0.368													11	39					0	0	0.001368	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643778	37643778	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:37643778G>A	uc002ofo.1	-	5	1254	c.1023C>T	c.(1021-1023)CTC>CTT	p.L341L	ZNF585A_uc002ofm.1_Silent_p.L286L|ZNF585A_uc002ofn.1_Silent_p.L286L	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	341	C2H2-type 7; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TATGTGTAACGAGGTTGGAAT	0.398													35	98					0	0	0.003271	0	0
ZNF569	148266	broad.mit.edu	37	19	37904033	37904033	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:37904033G>A	uc002ogi.2	-	6	2085	c.1527C>T	c.(1525-1527)TTC>TTT	p.F509F	ZNF569_uc002ogh.2_Silent_p.F350F|ZNF569_uc002ogj.2_Silent_p.F533F	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	509	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GATGTGTAATGAAGTTTTGCT	0.363													13	46					0	0	0.001368	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38597184	38597184	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:38597184C>T	uc002ohk.2	+	7	2546	c.2037C>T	c.(2035-2037)TCC>TCT	p.S679S		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	679	Rap-GAP.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CAGCCGACTCCACGGGAACCC	0.403													25	65					0	0	0.007291	0	0
CATSPERG	57828	broad.mit.edu	37	19	38858385	38858385	+	Missense_Mutation	SNP	G	A	A	rs147603617		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:38858385G>A	uc002oih.3	+	25	2986	c.2899G>A	c.(2899-2901)GAA>AAA	p.E967K	CATSPERG_uc002oig.3_Missense_Mutation_p.E927K|CATSPERG_uc002oif.3_Missense_Mutation_p.E607K|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	967	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CAGTGAGGACGAAATCTACCG	0.592													91	189					0	0	0.003610	0	0
CATSPERG	57828	broad.mit.edu	37	19	38858759	38858759	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:38858759A>T	uc002oih.3	+	26	3089	c.3002A>T	c.(3001-3003)CAC>CTC	p.H1001L	CATSPERG_uc002oig.3_Missense_Mutation_p.H961L|CATSPERG_uc002oif.3_Missense_Mutation_p.H641L|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	1001	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						ATCATGTCCCACGAGAGCCCA	0.602													25	76					0	0	0.005443	0	0
CATSPERG	57828	broad.mit.edu	37	19	38861407	38861407	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:38861407C>T	uc002oih.3	+	29	3542	c.3455C>T	c.(3454-3456)GCC>GTC	p.A1152V	CATSPERG_uc002oig.3_Missense_Mutation_p.A1112V|CATSPERG_uc002oif.3_Missense_Mutation_p.A792V|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	1152	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CCCAAGGAAGCCGTGGAGAGA	0.557													29	65					0	0	0.009535	0	0
RYR1	6261	broad.mit.edu	37	19	38996033	38996033	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:38996033G>A	uc002oit.2	+	53	8525	c.8395G>A	c.(8395-8397)GAG>AAG	p.E2799K	RYR1_uc002oiu.2_Missense_Mutation_p.E2799K|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2799	5.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GACCTTTTCAGAGAAGGTGAC	0.517													4	7					0	0	0.009096	0	0
RYR1	6261	broad.mit.edu	37	19	39008051	39008051	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:39008051G>A	uc002oit.2	+	66	9868	c.9738G>A	c.(9736-9738)CTG>CTA	p.L3246L	RYR1_uc002oiu.2_Silent_p.L3246L|RYR1_uc002oiv.1_Silent_p.L166L|RYR1_uc010xuf.1_Silent_p.L166L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3246					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCCCGGTGCTGGAGCGGCTCA	0.632													15	49					0	0	0.006122	0	0
RYR1	6261	broad.mit.edu	37	19	39034477	39034477	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:39034477C>T	uc002oit.2	+	87	12104	c.11974C>T	c.(11974-11976)CTG>TTG	p.L3992L	RYR1_uc002oiu.2_Silent_p.L3987L|RYR1_uc002oiv.1_Silent_p.L901L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3992	Helical; Name=M1; (Potential).				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGTGGGATTCCTGCACGTGTT	0.642													9	20					0	0	0.008291	0	0
IL28B	282617	broad.mit.edu	37	19	39735076	39735076	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:39735076C>T	uc010xut.1	-	2	243	c.239G>A	c.(238-240)TGG>TAG	p.W80*	IL28B_uc010xuu.1_Nonsense_Mutation_p.W80*	NM_172139	NP_742151	Q8IZI9	IL28B_HUMAN	interleukin 28B	80					response to virus	extracellular space	cytokine activity				0	all_cancers(60;2.81e-07)|all_lung(34;7.81e-08)|Lung NSC(34;9.29e-08)|all_epithelial(25;3.9e-07)|Ovarian(47;0.0315)		Epithelial(26;1.55e-27)|all cancers(26;1.41e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CCTCAGGTCCCAGGTCCTGGG	0.612													6	17					0	0	0.003080	0	0
PAF1	54623	broad.mit.edu	37	19	39879204	39879204	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:39879204C>T	uc002old.2	-	10	1028	c.853G>A	c.(853-855)GAT>AAT	p.D285N	PAF1_uc002ole.1_Missense_Mutation_p.D275N|PAF1_uc010xuv.1_RNA|MED29_uc010xuw.1_5'Flank|MED29_uc002olf.2_5'Flank|MED29_uc010xux.1_5'Flank	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	285					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			ACGCACACATCATCTGGTGCA	0.507													46	67					0	0	0.003214	0	0
FCGBP	8857	broad.mit.edu	37	19	40434209	40434209	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:40434209C>T	uc002omp.3	-	2	68	c.60G>A	c.(58-60)TTG>TTA	p.L20L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	20						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCTCCTGGGTCAATCCTGGTT	0.507													10	40					0	0	0.008291	0	0
MAP3K10	4294	broad.mit.edu	37	19	40720917	40720917	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:40720917C>T	uc002ona.2	+	10	2871	c.2583C>T	c.(2581-2583)CCC>CCT	p.P861P	MAP3K10_uc002onb.2_Silent_p.P250P	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	861					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						TGCCCGACCCCCAGGCCCTGT	0.682													17	22					0	0	0.007413	0	0
LTBP4	8425	broad.mit.edu	37	19	41129586	41129586	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:41129586T>C	uc002ooh.1	+	29	3835	c.3835T>C	c.(3835-3837)TGC>CGC	p.C1279R	LTBP4_uc002oog.1_Missense_Mutation_p.C1242R|LTBP4_uc002ooi.1_Missense_Mutation_p.C1212R|LTBP4_uc002ooj.1_Missense_Mutation_p.C152R|LTBP4_uc002ook.1_Missense_Mutation_p.C413R|LTBP4_uc002ool.1_Missense_Mutation_p.C291R|LTBP4_uc010xvp.1_Missense_Mutation_p.C39R	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1279	EGF-like 13; calcium-binding (Potential).				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGGCTACTCATGCTATTGCAG	0.592													17	29					0	0	0.006122	0	0
CYP2A7	1549	broad.mit.edu	37	19	41387627	41387627	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:41387627G>A	uc002opm.2	-	2	752	c.210C>T	c.(208-210)ACC>ACT	p.T70T	CYP2A7_uc002opo.2_Silent_p.T70T|CYP2A7_uc002opn.2_Intron	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	70						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			CCAAGTGAATGGTGAACACGG	0.642													12	29					0	0	0.001368	0	0
CYP2B6	1555	broad.mit.edu	37	19	41515906	41515906	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:41515906C>T	uc002opr.1	+	6	837	c.830C>T	c.(829-831)TCC>TTC	p.S277F	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Intron	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	277					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	CAGGAGAAATCCAACGCACAC	0.592													24	40					0	0	0.004656	0	0
LYPD4	147719	broad.mit.edu	37	19	42341250	42341250	+	Silent	SNP	G	A	A	rs148256898		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:42341250G>A	uc002orp.1	-	5	1692	c.708C>T	c.(706-708)GTC>GTT	p.V236V	LYPD4_uc002orq.1_Silent_p.V201V	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	236						anchored to membrane|plasma membrane				ovary(1)	1						GGCCTAAGACGACACCCCAAG	0.483													24	51					0	0	0.002299	0	0
ATP1A3	478	broad.mit.edu	37	19	42479941	42479941	+	Silent	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:42479941A>T	uc002osg.2	-	16	2257	c.2103T>A	c.(2101-2103)ATT>ATA	p.I701I	ATP1A3_uc010xwf.1_Silent_p.I712I|ATP1A3_uc010xwg.1_Silent_p.I671I|ATP1A3_uc010xwh.1_Silent_p.I714I|ATP1A3_uc002osh.2_Silent_p.I701I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	701	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TCACAGCCACAATTGCACCCT	0.433													32	76					0	0	0.002445	0	0
ZNF574	64763	broad.mit.edu	37	19	42584958	42584958	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:42584958C>T	uc002osm.3	+	2	2369	c.2200C>T	c.(2200-2202)CGC>TGC	p.R734C	ZNF574_uc002osk.3_Missense_Mutation_p.R824C	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	734					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				GGCCCCTGCCCGCCGCCGGGG	0.677													41	90					0	0	0.006999	0	0
TMEM145	284339	broad.mit.edu	37	19	42818443	42818443	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:42818443G>A	uc002otk.1	+	2	192	c.140G>A	c.(139-141)AGA>AAA	p.R47K		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	transmembrane protein 145	47						integral to membrane					0		Prostate(69;0.00682)				TTCCTGACAAGATTTTGTTTC	0.542													50	96					0	0	0.003610	0	0
LIPE	3991	broad.mit.edu	37	19	42931082	42931082	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:42931082C>T	uc002otr.2	-	1	497	c.220G>A	c.(220-222)GAA>AAA	p.E74K	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|LIPE_uc002ots.1_5'Flank	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	74					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				GCTCTAGGTTCCTTCTGGGAT	0.522													76	156					0	0	0.003610	0	0
PSG8	440533	broad.mit.edu	37	19	43259246	43259246	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:43259246G>A	uc002ouo.2	-	4	980	c.882C>T	c.(880-882)ATC>ATT	p.I294I	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_Intron|PSG8_uc002oui.2_Silent_p.I133I|PSG8_uc002ouh.2_Silent_p.I294I|PSG8_uc010ein.2_Silent_p.I172I|PSG8_uc002ouj.3_Silent_p.I76I|PSG8_uc002ouk.3_Silent_p.I133I|PSG8_uc002oul.3_Silent_p.I294I|PSG8_uc002oum.3_Silent_p.I201I|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Silent_p.I201I	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	294	Ig-like C2-type 2.					extracellular region					0		Prostate(69;0.00899)				GTAGAATGAGGATCCTGTTTT	0.488													45	126					0	0	0.003610	0	0
PSG7	5676	broad.mit.edu	37	19	43430647	43430647	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:43430647C>T	uc002ovl.3	-	5	1033	c.931G>A	c.(931-933)GAA>AAA	p.E311K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.E189K	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	311	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TCCCGTATTTCACATTGATAG	0.517													65	127					0	0	0.003610	0	0
PSG7	5676	broad.mit.edu	37	19	43430737	43430737	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:43430737G>A	uc002ovl.3	-	5	943	c.841C>T	c.(841-843)CCG>TCG	p.P281S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.P159S	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	281	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGACTGACCGGGAGGCTCTGA	0.468													117	273					0	0	0.003610	0	0
PSG5	5673	broad.mit.edu	37	19	43674288	43674288	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:43674288G>A	uc002ovu.2	-	5	1098	c.967C>T	c.(967-969)CCT>TCT	p.P323S	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.P198S|PSG5_uc002ovx.2_Missense_Mutation_p.P323S|PSG5_uc002ovv.2_Missense_Mutation_p.P416S|PSG5_uc002ovw.2_Missense_Mutation_p.P145S	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	323					female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				ATTCCTGAAGGAGCTGTCATG	0.428													37	96					0	0	0.007835	0	0
PSG9	5678	broad.mit.edu	37	19	43763053	43763053	+	Missense_Mutation	SNP	C	T	T	rs147249563	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:43763053C>T	uc002owd.3	-	4	1043	c.944G>A	c.(943-945)CGA>CAA	p.R315Q	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Missense_Mutation_p.R222Q|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	315	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GCCACCATATCGGTCCCGTAT	0.493													47	22					0	0	0.003610	0	0
CD177	57126	broad.mit.edu	37	19	43866377	43866377	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:43866377G>A	uc002owi.2	+	10	1261	c.1219G>A	c.(1219-1221)GGA>AGA	p.G407R	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	407					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				TCAGCATGAGGGAGGTGGGGC	0.612													18	41					0	0	0.010504	0	0
TEX101	83639	broad.mit.edu	37	19	43922487	43922487	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:43922487C>T	uc010xwo.1	+	6	883	c.688C>T	c.(688-690)CCT>TCT	p.P230S	TEX101_uc002owk.2_Missense_Mutation_p.P248S	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	230						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				TCTTCCCATTCCTGTTTGGGG	0.498													42	93					0	0	0.003610	0	0
ZNF225	7768	broad.mit.edu	37	19	44622362	44622362	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:44622362G>A	uc002oyj.1	+	3	280	c.37G>A	c.(37-39)GTG>ATG	p.V13M	ZNF225_uc010eje.1_Translation_Start_Site|ZNF225_uc010ejf.1_Missense_Mutation_p.V13M	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	13	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				CTTCAAGGACGTGGCTGTGGT	0.542													30	79					0	0	0.002096	0	0
ZFP112	7771	broad.mit.edu	37	19	44831861	44831861	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:44831861G>A	uc010ejj.2	-	5	2580	c.2467C>T	c.(2467-2469)CAT>TAT	p.H823Y	ZFP112_uc002ozc.3_Missense_Mutation_p.H817Y|ZFP112_uc010xwy.1_Missense_Mutation_p.H840Y|ZFP112_uc010xwz.1_Missense_Mutation_p.H822Y	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	823	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						ACTCTGTGATGGGCTTGAAGA	0.473													36	115					0	0	0.005524	0	0
CBLC	23624	broad.mit.edu	37	19	45295716	45295716	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:45295716T>C	uc002ozs.2	+	7	1145	c.1082T>C	c.(1081-1083)GTG>GCG	p.V361A	CBLC_uc010ejt.2_Missense_Mutation_p.V315A	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	361	RING-type.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				AACAAGGATGTGAAGATTGAG	0.607			M		AML								46	100					0	0	0.003610	0	0
RTN2	6253	broad.mit.edu	37	19	45997524	45997524	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:45997524C>T	uc002pcb.2	-	4	942	c.714G>A	c.(712-714)GAG>GAA	p.E238E	RTN2_uc002pcc.2_Silent_p.E238E|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	238						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		GCTTTTCTTCCTCTTCCAGCA	0.612													26	53					0	0	0.006320	0	0
DMPK	1760	broad.mit.edu	37	19	46280717	46280717	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:46280717G>A	uc002pdd.1	-	7	1588	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	DMPK_uc010xxs.1_Silent_p.F249F|DMPK_uc002pde.1_Silent_p.F348F|DMPK_uc002pdf.1_Silent_p.F338F|DMPK_uc002pdg.1_Silent_p.F338F|DMPK_uc002pdh.1_Silent_p.F338F|DMPK_uc002pdi.1_Silent_p.F364F|DMPK_uc010xxt.1_Silent_p.F338F	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	348	Protein kinase.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		GGCCAAAGAAGAAGGGATGTG	0.627													15	39					0	0	0.003163	0	0
DMPK	1760	broad.mit.edu	37	19	46282606	46282606	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:46282606G>A	uc002pdd.1	-	3	922	c.378C>T	c.(376-378)TTC>TTT	p.F126F	DMPK_uc010xxs.1_Silent_p.F27F|DMPK_uc002pde.1_Silent_p.F126F|DMPK_uc002pdf.1_Silent_p.F116F|DMPK_uc002pdg.1_Silent_p.F116F|DMPK_uc002pdh.1_Silent_p.F116F|DMPK_uc002pdi.1_Silent_p.F142F|DMPK_uc010xxt.1_Silent_p.F116F|DMPK_uc010xxu.1_Silent_p.F126F	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	126	Protein kinase.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		TCTCCTCACGGAAGCACGACA	0.687													42	66					0	0	0.002522	0	0
DMWD	1762	broad.mit.edu	37	19	46289715	46289715	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:46289715C>T	uc002pdj.1	-	3	1085	c.1039G>A	c.(1039-1041)GAT>AAT	p.D347N	DMWD_uc002pdk.1_Missense_Mutation_p.D347N|DMWD_uc010eko.1_Missense_Mutation_p.D32N	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	347	WD 3.				meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		ACCAGGTCATCTTCGCCACCC	0.642													22	66					0	0	0.003954	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307553	46307553	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:46307553G>A	uc002pdm.2	-	3	1753	c.1610C>T	c.(1609-1611)TCC>TTC	p.S537F	RSPH6A_uc002pdl.2_Missense_Mutation_p.S273F	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	537	Glu-rich.					intracellular				ovary(1)|central_nervous_system(1)	2						GTTGGCCATGGAGTCGACCAG	0.662													29	42					0	0	0.009535	0	0
RSPH6A	81492	broad.mit.edu	37	19	46308182	46308182	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:46308182G>A	uc002pdm.2	-	3	1124	c.981C>T	c.(979-981)TTC>TTT	p.F327F	RSPH6A_uc002pdl.2_Silent_p.F63F	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	327						intracellular				ovary(1)|central_nervous_system(1)	2						TCATGGCCAGGAAAATGCGGA	0.617													20	33					0	0	0.008871	0	0
SYMPK	8189	broad.mit.edu	37	19	46319823	46319823	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:46319823G>A	uc002pdn.2	-	25	3516	c.3271C>T	c.(3271-3273)CCT>TCT	p.P1091S	RSPH6A_uc002pdm.2_5'Flank	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	1091					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		ATGGAGTTAGGGATGTGAGCT	0.667													11	37					0	0	0.001368	0	0
FOXA3	3171	broad.mit.edu	37	19	46375568	46375568	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:46375568G>A	uc002pdr.2	+	2	502	c.305G>A	c.(304-306)GGG>GAG	p.G102E		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	102					brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		CTGGTGCACGGGAAGGAGATG	0.692													16	30					0	0	0.007413	0	0
GRLF1	2909	broad.mit.edu	37	19	47423263	47423263	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:47423263C>T	uc010ekv.2	+	1	1331	c.1331C>T	c.(1330-1332)CCT>CTT	p.P444L		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	444	FF 3.				axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		GAGACTTCTCCTTTCATAACT	0.453													18	32					0	0	0.006122	0	0
GRLF1	2909	broad.mit.edu	37	19	47423875	47423875	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:47423875T>C	uc010ekv.2	+	1	1943	c.1943T>C	c.(1942-1944)GTG>GCG	p.V648A		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	648					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		AGGCTTCCTGTGAACTCTTTC	0.438													28	61					0	0	0.009535	0	0
DHX34	9704	broad.mit.edu	37	19	47885322	47885322	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:47885322C>T	uc010xyn.1	+	17	3725	c.3384C>T	c.(3382-3384)TTC>TTT	p.F1128F	DHX34_uc010xyo.1_Silent_p.F257F	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	1128						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		GGAAGGACTTCCTCTTTACAC	0.642													21	34					0	0	0.002299	0	0
CA11	770	broad.mit.edu	37	19	49143141	49143141	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:49143141C>T	uc002pjz.1	-	5	1034	c.472_splice	c.e5-1	p.V158_splice	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|DBP_uc002pjx.3_5'Flank|DBP_uc002pjy.2_5'Flank|DBP_uc010elz.1_5'Flank	NM_001217	NP_001208	O75493	CAH11_HUMAN	carbonic anhydrase XI precursor							extracellular region					0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000103)|all cancers(93;0.000119)|GBM - Glioblastoma multiforme(486;0.00634)|Epithelial(262;0.016)		TGAGCTGCACCTGGGGGTAGC	0.597													18	60					0	0	0.006122	0	0
TRPM4	54795	broad.mit.edu	37	19	49671177	49671177	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:49671177C>T	uc002pmw.2	+	4	343	c.271C>T	c.(271-273)CTC>TTC	p.L91F	TRPM4_uc010emu.2_Missense_Mutation_p.L91F|TRPM4_uc010yak.1_Intron|TRPM4_uc002pmx.2_Intron|TRPM4_uc010emv.2_Intron|TRPM4_uc010yal.1_Intron	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	91	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		TCCACAGTTCCTCCGGCTCTC	0.483													53	89					0	0	0.003610	0	0
TSKS	60385	broad.mit.edu	37	19	50248617	50248617	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:50248617C>T	uc002ppm.2	-	7	1040	c.1029G>A	c.(1027-1029)CAG>CAA	p.Q343Q		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	343							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		CCCCCTCCTCCTGATGCCACC	0.701													5	5					0	0	0.000602	0	0
TSKS	60385	broad.mit.edu	37	19	50249796	50249796	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:50249796C>T	uc002ppm.2	-	6	934	c.923G>A	c.(922-924)CGG>CAG	p.R308Q		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	308							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		CTCGCCAGCCCGAGGCCCCAT	0.716													15	39					0	0	0.004007	0	0
MED25	81857	broad.mit.edu	37	19	50331794	50331794	+	Missense_Mutation	SNP	C	G	G	rs137859678		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:50331794C>G	uc002ppw.1	+	4	447	c.394C>G	c.(394-396)CGC>GGC	p.R132G	MED25_uc010ybe.1_Intron|MED25_uc002ppx.1_5'Flank	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	132	Interaction with the Mediator complex.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		CAAGAAGATGCGCGAGCAGAT	0.622													32	59					0	0	0.009535	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50455607	50455607	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:50455607C>T	uc010ybh.1	-	9	1787	c.1696G>A	c.(1696-1698)GGA>AGA	p.G566R	SIGLEC11_uc010ybi.1_Missense_Mutation_p.G470R	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	566	Helical; (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		ACGCCAGCTCCCAGGGCAGCC	0.657													21	65					0	0	0.002299	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50462659	50462659	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:50462659T>C	uc010ybh.1	-	5	1106	c.1015A>G	c.(1015-1017)AGG>GGG	p.R339G	SIGLEC11_uc010ybi.1_Missense_Mutation_p.R339G	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	339	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GAGCCAAGCCTGTTCTCCGCT	0.672													30	70					0	0	0.002445	0	0
MYBPC2	4606	broad.mit.edu	37	19	50958842	50958842	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:50958842C>T	uc002psf.2	+	20	2330	c.2279C>T	c.(2278-2280)CCG>CTG	p.P760L		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	760	Fibronectin type-III 2.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		TGGAGGCCTCCGAACAGGATC	0.597													28	69					0	0	0.008361	0	0
MYBPC2	4606	broad.mit.edu	37	19	50967675	50967675	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:50967675G>A	uc002psf.2	+	27	3352	c.3301G>A	c.(3301-3303)GGA>AGA	p.G1101R		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	1101	Ig-like C2-type 7.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CAATTACCAAGGAGTCCTGAC	0.577													3	16					0	0	0.009096	0	0
GPR32	2854	broad.mit.edu	37	19	51274868	51274868	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51274868G>A	uc010ycf.1	+	1	1011	c.1011G>A	c.(1009-1011)AGG>AGA	p.R337R		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	337	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CCCTGGCGAGGGCGTTTGGAG	0.547													46	65					0	0	0.003610	0	0
KLK1	3816	broad.mit.edu	37	19	51323241	51323241	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51323241C>T	uc002ptk.1	-	4	586	c.547G>A	c.(547-549)GAT>AAT	p.D183N	KLK1_uc010ycg.1_RNA	NM_002257	NP_002248	P06870	KLK1_HUMAN	kallikrein 1 preproprotein	183	Peptidase S1.				proteolysis	nucleus	serine-type endopeptidase activity				0		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00399)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTGCACTCATCATTAGGCAGG	0.542													19	31					0	0	0.010504	0	0
KLK11	11012	broad.mit.edu	37	19	51528040	51528040	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51528040C>T	uc002pvd.1	-	3	259	c.147G>A	c.(145-147)GGG>GGA	p.G49G	KLK11_uc002pvb.1_Silent_p.G17G|KLK11_uc002pve.1_5'UTR|KLK11_uc002pvf.1_Silent_p.G17G|KLK11_uc002pvc.3_Silent_p.G17G|KLK11_uc010eom.2_Silent_p.G17G	NM_144947	NP_659196	Q9UBX7	KLK11_HUMAN	kallikrein 11 isoform 2 precursor	49					proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|GBM - Glioblastoma multiforme(134;0.00878)		TGGTCTCTCCCCCTACAAGCC	0.617													10	12					0	0	0.000978	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51631291	51631291	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51631291C>T	uc002pvu.2	+	5	1168	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	SIGLEC9_uc010yct.1_Silent_p.F367F	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	367	Helical; (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GCGTCATCTTCGTTGTGTAAG	0.612													65	119					0	0	0.003610	0	0
CD33	945	broad.mit.edu	37	19	51729138	51729138	+	Silent	SNP	C	T	T	rs147729352		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51729138C>T	uc002pwa.2	+	3	538	c.498C>T	c.(496-498)TCC>TCT	p.S166S	CD33_uc010eos.1_Silent_p.S166S|CD33_uc010eot.1_Silent_p.S39S|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	166	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	GCTCTGTGTCCTGGGCCTGTG	0.587													28	76					0	0	0.006320	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51918534	51918534	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51918534C>T	uc002pwo.2	-	7	1847	c.1231G>A	c.(1231-1233)GAG>AAG	p.E411K	SIGLEC10_uc002pwp.2_Missense_Mutation_p.E353K|SIGLEC10_uc002pwq.2_Missense_Mutation_p.E353K|SIGLEC10_uc002pwr.2_Missense_Mutation_p.E411K|SIGLEC10_uc010ycy.1_Missense_Mutation_p.E321K|SIGLEC10_uc010ycz.1_Missense_Mutation_p.E363K|SIGLEC10_uc010eow.2_Missense_Mutation_p.E223K|SIGLEC10_uc002pws.1_Missense_Mutation_p.E247K	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	411	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		CGAGGCAGCTCCAGGACCCCG	0.667													16	39					0	0	0.004007	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51957944	51957944	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51957944A>G	uc002pwt.2	-	5	1209	c.1142T>C	c.(1141-1143)TTC>TCC	p.F381S	SIGLEC8_uc010yda.1_Missense_Mutation_p.F272S|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.F288S	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	381	Helical; (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCACATGATGAAGATGATGCA	0.597													28	69					0	0	0.009535	0	0
CEACAM18	729767	broad.mit.edu	37	19	51981793	51981793	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51981793G>A	uc002pwv.1	+	2	80	c.80G>A	c.(79-81)CGA>CAA	p.R27Q		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	27						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GCTGGGAGACGAGACCGGCAG	0.652													7	11					0	0	0.004482	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986304	51986304	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:51986304C>T	uc002pwv.1	+	5	890	c.890C>T	c.(889-891)CCT>CTT	p.P297L		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	297	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		AGGAGCAATCCTGATGATTTC	0.537													64	132					0	0	0.003610	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52002469	52002469	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:52002469G>A	uc002pwx.1	-	4	1146	c.1090C>T	c.(1090-1092)CCT>TCT	p.P364S	SIGLEC12_uc002pww.1_Missense_Mutation_p.P246S|SIGLEC12_uc010eoy.1_Missense_Mutation_p.P91S	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	364	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TTCTGAGGAGGATCTGGAACA	0.562													17	45					0	0	0.008871	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033984	52033984	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:52033984G>A	uc002pwy.2	-	3	819	c.657C>T	c.(655-657)TTC>TTT	p.F219F	SIGLEC6_uc002pwz.2_Silent_p.F219F|SIGLEC6_uc002pxa.2_Silent_p.F219F|SIGLEC6_uc010ydb.1_Silent_p.F172F|SIGLEC6_uc010ydc.1_Silent_p.F208F|SIGLEC6_uc010eoz.1_Silent_p.F197F|SIGLEC6_uc010epb.1_Silent_p.F172F|SIGLEC6_uc010epa.1_Silent_p.F208F	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	219	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		CGGCTCCAGGGAACGTCACCT	0.667													39	66					0	0	0.008740	0	0
ZNF432	9668	broad.mit.edu	37	19	52537010	52537010	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:52537010A>T	uc002pyk.2	-	5	2240	c.1922T>A	c.(1921-1923)ATT>AAT	p.I641N		NM_014650	NP_055465	O94892	ZN432_HUMAN	zinc finger protein 432	641	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|pancreas(1)	3		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.0054)|OV - Ovarian serous cystadenocarcinoma(262;0.0182)		CTGATGTACAATGAGATTTCT	0.403													41	123					0	0	0.002522	0	0
ZNF480	147657	broad.mit.edu	37	19	52824896	52824896	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:52824896C>T	uc010ydl.1	+	5	463	c.393C>T	c.(391-393)TCC>TCT	p.S131S	ZNF480_uc002pyv.2_Silent_p.S54S|ZNF480_uc010ydm.1_Silent_p.S88S|ZNF480_uc010epn.2_5'UTR|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		TTGGAGTATCCTTTCACTTAC	0.373													15	46					0	0	0.004007	0	0
ZNF845	91664	broad.mit.edu	37	19	53854516	53854516	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:53854516C>T	uc010ydv.1	+	4	705	c.588C>T	c.(586-588)TTC>TTT	p.F196F	ZNF845_uc010ydw.1_Silent_p.F196F	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGAATAATTTCCTGAATTCTT	0.363													21	63					0	0	0.008871	0	0
ZNF761	388561	broad.mit.edu	37	19	53958194	53958194	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:53958194C>T	uc010eqp.2	+	7	891	c.433C>T	c.(433-435)CAT>TAT	p.H145Y	ZNF761_uc010ydy.1_Missense_Mutation_p.H91Y|ZNF761_uc002qbt.1_Missense_Mutation_p.H91Y	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	145					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		ATCAAGCTTTCATTCGCATCT	0.388													50	71					0	0	0.003610	0	0
ZNF813	126017	broad.mit.edu	37	19	53994127	53994127	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:53994127C>T	uc002qbu.2	+	4	769	c.641C>T	c.(640-642)TCT>TTT	p.S214F	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	214					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		AGAGAAAAGTCTTTCCAATGT	0.343													27	73					0	0	0.006320	0	0
TFPT	29844	broad.mit.edu	37	19	54611388	54611389	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:54611388_54611389GG>AA	uc010yej.1	-	5	992_993	c.586_587CC>TT	c.(586-588)CCA>TTA	p.P196L		NM_013342	NP_037474	P0C1Z6	TFPT_HUMAN	TCF3 (E2A) fusion partner	196					apoptosis|DNA recombination|DNA repair|induction of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex	DNA binding|protein binding				0	all_cancers(19;0.004)|all_epithelial(19;0.00195)|all_lung(19;0.0193)|Lung NSC(19;0.0358)|Breast(117;0.137)|Ovarian(34;0.19)					TCCATCCCGTGGCACTCGCCGC	0.693			T	TCF3	pre-B ALL								16	48					0	0	0.004672	0	0
LILRB1	10859	broad.mit.edu	37	19	55143641	55143641	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:55143641C>T	uc002qgj.2	+	6	954	c.614C>T	c.(613-615)CCC>CTC	p.P205L	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.P205L|LILRB1_uc002qgk.2_Missense_Mutation_p.P205L|LILRB1_uc002qgm.2_Missense_Mutation_p.P205L|LILRB1_uc010erq.2_Missense_Mutation_p.P205L|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	205	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCGAACTCTCCCTATGAGTGG	0.607										HNSCC(37;0.09)			33	117					0	0	0.003755	0	0
LILRB1	10859	broad.mit.edu	37	19	55147030	55147030	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:55147030G>A	uc002qgj.2	+	14	1960	c.1620G>A	c.(1618-1620)CAG>CAA	p.Q540Q	LILRB1_uc010erp.1_Silent_p.Q155Q|LILRB1_uc002qgl.2_Silent_p.Q540Q|LILRB1_uc002qgk.2_Silent_p.Q541Q|LILRB1_uc002qgm.2_Silent_p.Q541Q|LILRB1_uc010erq.2_Silent_p.Q524Q|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	540	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		AGCACACACAGCCTGAGGATG	0.607										HNSCC(37;0.09)			42	94					0	0	0.003610	0	0
LILRB4	11006	broad.mit.edu	37	19	55178186	55178186	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:55178186G>A	uc002qgp.2	+	10	1389	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	LILRB4_uc002qgq.2_Missense_Mutation_p.E343K|LILRB4_uc002qgr.2_Missense_Mutation_p.E385K|LILRB4_uc010ert.2_Missense_Mutation_p.E385K|LILRB4_uc010eru.2_Missense_Mutation_p.E373K	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	343	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GGACGGGGTGGAAATGGACAC	0.353													18	53					0	0	0.002299	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55284790	55284790	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:55284790C>T	uc002qhb.1	+	3	114	c.76C>T	c.(76-78)CAC>TAC	p.H26Y	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.H26Y	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	26	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CCTAGGAGTCCACAGAAAACC	0.502													6	94					0	0	0.008871	0	0
NLRP2	55655	broad.mit.edu	37	19	55512191	55512191	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:55512191C>T	uc002qij.2	+	13	3200	c.3114C>T	c.(3112-3114)AAC>AAT	p.N1038N	NLRP2_uc010yfp.1_Silent_p.N1015N|NLRP2_uc010esn.2_Silent_p.N1014N|NLRP2_uc010eso.2_Silent_p.N1035N|NLRP2_uc010esp.2_Silent_p.N1016N	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	1038					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		AAGAAAAAAACCCACAACTGA	0.413													16	39					0	0	0.003163	0	0
NLRP9	338321	broad.mit.edu	37	19	56244087	56244087	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:56244087G>A	uc002qly.2	-	2	1138	c.1110C>T	c.(1108-1110)TCC>TCT	p.S370S		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	370	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TTGTTAAAAAGGATGCATATA	0.438													28	77					0	0	0.005443	0	0
NLRP11	204801	broad.mit.edu	37	19	56300601	56300601	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:56300601T>A	uc010ygf.1	-	10	3389	c.2678A>T	c.(2677-2679)AAT>ATT	p.N893I	NLRP11_uc002qlz.2_Missense_Mutation_p.N740I|NLRP11_uc002qmb.2_Missense_Mutation_p.N794I|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	893							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CTACCCAATATTCACCAACAT	0.468													28	51					0	0	0.006320	0	0
NLRP4	147945	broad.mit.edu	37	19	56370281	56370281	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:56370281A>T	uc002qmd.3	+	3	1944	c.1522A>T	c.(1522-1524)AAT>TAT	p.N508Y	NLRP4_uc002qmf.2_Missense_Mutation_p.N433Y|NLRP4_uc010etf.2_Missense_Mutation_p.N339Y	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	508							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TGGCCTTTTAAATAAAAAGGA	0.423													32	55					0	0	0.002836	0	0
NLRP8	126205	broad.mit.edu	37	19	56465912	56465912	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:56465912C>T	uc002qmh.2	+	3	559	c.488C>T	c.(487-489)CCC>CTC	p.P163L	NLRP8_uc010etg.2_Missense_Mutation_p.P163L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	163						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AAGTTTTTCCCCATATGGGAC	0.438													22	62					0	0	0.010504	0	0
NLRP8	126205	broad.mit.edu	37	19	56466710	56466711	+	Missense_Mutation	DNP	GG	AA	AA	rs150630809	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:56466710_56466711GG>AA	uc002qmh.2	+	3	1357_1358	c.1286_1287GG>AA	c.(1285-1287)CGG>CAA	p.R429Q	NLRP8_uc010etg.2_Missense_Mutation_p.R429Q	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	429	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GTGTTCGTCCGGTATATTTCTA	0.49													31	69					0	0	0.004672	0	0
NLRP8	126205	broad.mit.edu	37	19	56485109	56485109	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:56485109G>A	uc002qmh.2	+	7	2697	c.2626G>A	c.(2626-2628)GAA>AAA	p.E876K	NLRP8_uc010etg.2_Missense_Mutation_p.E857K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	876	LRR 4.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GAGCTTGGCAGAAAACGCCTT	0.502													50	119					0	0	0.003610	0	0
PEG3	5178	broad.mit.edu	37	19	57327958	57327958	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:57327958G>A	uc002qnu.2	-	7	2203	c.1852C>T	c.(1852-1854)CAG>TAG	p.Q618*	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Nonsense_Mutation_p.Q589*|PEG3_uc002qnv.2_Nonsense_Mutation_p.Q618*|PEG3_uc002qnw.2_Nonsense_Mutation_p.Q494*|PEG3_uc002qnx.2_Nonsense_Mutation_p.Q492*|PEG3_uc010etr.2_Nonsense_Mutation_p.Q618*	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	618					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TACATTTTCTGAAACTCATTA	0.368													6	19					0	0	0.001168	0	0
USP29	57663	broad.mit.edu	37	19	57640389	57640389	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:57640389G>A	uc002qny.2	+	4	702	c.346G>A	c.(346-348)GAT>AAT	p.D116N		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	116					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATCTGATGATGATTGGAGTGT	0.353													13	38					0	0	0.002450	0	0
USP29	57663	broad.mit.edu	37	19	57640998	57640998	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:57640998C>T	uc002qny.2	+	4	1311	c.955C>T	c.(955-957)CCA>TCA	p.P319S		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	319					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCAAGGTGTCCCATGGGAATA	0.408													31	65					0	0	0.002445	0	0
USP29	57663	broad.mit.edu	37	19	57642045	57642045	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:57642045A>G	uc002qny.2	+	4	2358	c.2002A>G	c.(2002-2004)AAG>GAG	p.K668E		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	668					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGATGGAGGGAAGCTGATCAG	0.473													18	33					0	0	0.007413	0	0
ZNF773	374928	broad.mit.edu	37	19	58016719	58016719	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:58016719G>A	uc002qox.2	+	3	353	c.213G>A	c.(211-213)GAG>GAA	p.E71E	ZNF547_uc002qpm.3_Intron|ZNF773_uc002qoy.2_Silent_p.E70E|ZNF773_uc002qoz.2_RNA	NM_198542	NP_940944	Q6PK81	ZN773_HUMAN	zinc finger protein 773	71	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)		AGTCATGGGAGGAGCCCTTCA	0.512													23	59					0	0	0.002836	0	0
ZNF530	348327	broad.mit.edu	37	19	58118507	58118507	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:58118507G>A	uc002qpk.2	+	3	1834	c.1614G>A	c.(1612-1614)AGG>AGA	p.R538R	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	538	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TTCAGCATAGGAGAGTTCACA	0.458													13	32					0	0	0.001855	0	0
ZNF552	79818	broad.mit.edu	37	19	58320092	58320092	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:58320092G>A	uc002qqg.2	-	3	710	c.540C>T	c.(538-540)CTC>CTT	p.L180L	ZNF587_uc002qqb.2_Intron|ZNF552_uc010yhg.1_Silent_p.L176L	NM_024762	NP_079038	Q9H707	ZN552_HUMAN	zinc finger protein 552	180					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		ATCCTGACCTGAGCAAAAAGT	0.488													40	96					0	0	0.006999	0	0
ZNF135	7694	broad.mit.edu	37	19	58579610	58579610	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:58579610C>T	uc010yhq.1	+	5	1890	c.1794C>T	c.(1792-1794)TCC>TCT	p.S598S	ZNF135_uc002qre.2_Silent_p.S586S|ZNF135_uc002qrd.1_Intron|ZNF135_uc002qrf.2_Silent_p.S544S|ZNF135_uc002qrg.2_Silent_p.S556S|ZNF135_uc010yhr.1_Silent_p.S407S	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	598					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		GTGGGAAATCCTTCAGCCACA	0.552													20	70					0	0	0.010504	0	0
ZNF274	10782	broad.mit.edu	37	19	58721332	58721332	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:58721332C>T	uc002qrq.1	+	8	1204	c.745C>T	c.(745-747)CCT>TCT	p.P249S	ZNF274_uc010yhu.1_RNA|ZNF274_uc010yhv.1_RNA|ZNF274_uc002qrr.1_Missense_Mutation_p.P217S|ZNF274_uc002qrs.1_Missense_Mutation_p.P144S|ZNF274_uc010eum.1_Missense_Mutation_p.P8S	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	249					viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		CCCAGTACTTCCTGCAGGACA	0.647													10	18					0	0	0.000978	0	0
FAM150B	285016	broad.mit.edu	37	2	283168	283168	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:283168T>G	uc002qwi.3	-	5	749	c.396A>C	c.(394-396)AAA>AAC	p.K132N	FAM150B_uc010ewf.1_Missense_Mutation_p.K132N	NM_001002919	NP_001002919	Q6UX46	F150B_HUMAN	hypothetical protein LOC285016 precursor	132						extracellular region					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00175)|Lung NSC(108;0.216)|all_epithelial(98;0.236)		all cancers(51;0.00091)|Epithelial(75;0.00656)|OV - Ovarian serous cystadenocarcinoma(76;0.00954)|GBM - Glioblastoma multiforme(21;0.128)		TGGCGCATCTTTTATAGTCTA	0.408													6	27					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	2	905542	905542	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:905542C>T	uc010ewg.2	-	1		c.41G>A			uc010ewh.1_Missense_Mutation_p.R135Q					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		CCGGCCTCCTCGCCTGCACTG	0.617													8	424					0	0	0.001368	0	0
TPO	7173	broad.mit.edu	37	2	1460037	1460037	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:1460037C>T	uc002qww.2	+	7	893	c.802C>T	c.(802-804)CCA>TCA	p.P268S	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.P268S|TPO_uc002qwr.2_Missense_Mutation_p.P268S|TPO_uc002qwx.2_Missense_Mutation_p.P268S|TPO_uc010yio.1_Missense_Mutation_p.P268S|TPO_uc010yip.1_Missense_Mutation_p.P268S	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	268	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity	p.P268A(1)		ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GAACCAAAACCCATGTTTTCC	0.418													19	32					0	0	0.008871	0	0
NOL10	79954	broad.mit.edu	37	2	10712246	10712246	+	Missense_Mutation	SNP	G	A	A	rs142436125		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:10712246G>A	uc002raq.2	-	21	2143	c.2018C>T	c.(2017-2019)TCG>TTG	p.S673L	NOL10_uc010yje.1_Missense_Mutation_p.S647L|NOL10_uc010yjf.1_Missense_Mutation_p.S623L|NOL10_uc002rap.2_Missense_Mutation_p.S623L	NM_024894	NP_079170	Q9BSC4	NOL10_HUMAN	nucleolar protein 10	673	Potential.					nucleolus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.207)		GTGTCCGGCCGAACGACGGAG	0.483													70	171					0	0	0.003610	0	0
KCNF1	3754	broad.mit.edu	37	2	11052667	11052667	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:11052667G>A	uc002rax.2	+	1	605	c.115G>A	c.(115-117)GAC>AAC	p.D39N		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	39	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		GCTGTACGGGGACCTCCTCAG	0.662													7	23					0	0	0.004482	0	0
KCNF1	3754	broad.mit.edu	37	2	11053729	11053729	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:11053729T>G	uc002rax.2	+	1	1667	c.1177T>G	c.(1177-1179)TGT>GGT	p.C393G		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	393	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		CAGCTTCTTGTGTGGTGTCAT	0.597													9	34					0	0	0.004482	0	0
GREB1	9687	broad.mit.edu	37	2	11706631	11706631	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:11706631G>A	uc002rbk.1	+	4	603	c.303G>A	c.(301-303)CTG>CTA	p.L101L	GREB1_uc002rbl.2_Silent_p.L101L|GREB1_uc002rbm.2_5'UTR|GREB1_uc002rbn.1_Silent_p.L101L	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	101						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GGAAGGACCTGCGCCTTGTCT	0.642													23	43					0	0	0.003330	0	0
LPIN1	23175	broad.mit.edu	37	2	11964794	11964794	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:11964794C>T	uc010yjn.1	+	21	2824	c.2550C>T	c.(2548-2550)TTC>TTT	p.F850F	LPIN1_uc010yjm.1_Silent_p.F935F|LPIN1_uc002rbt.2_Silent_p.F850F|LPIN1_uc010yjo.1_Silent_p.F351F	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	850					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		ACCACGTTTTCCCGTTGCTGA	0.502													38	39					0	0	0.006230	0	0
NBAS	51594	broad.mit.edu	37	2	15319127	15319127	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:15319127G>A	uc002rcc.1	-	51	6851	c.6825C>T	c.(6823-6825)ATC>ATT	p.I2275I	NBAS_uc002rcb.1_Silent_p.I115I|NBAS_uc010exl.1_Silent_p.I1347I|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2275										ovary(2)|liver(1)|skin(1)	4						TGACTGCCGTGATTTGCTCCA	0.418													15	31					0	0	0.003163	0	0
NBAS	51594	broad.mit.edu	37	2	15555702	15555702	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:15555702G>A	uc002rcc.1	-	25	2931	c.2905C>T	c.(2905-2907)CCC>TCC	p.P969S	NBAS_uc010exl.1_Intron|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	969										ovary(2)|liver(1)|skin(1)	4						ATCTTCAGGGGAAATTTTAAG	0.358													29	79					0	0	0.002445	0	0
MYCN	4613	broad.mit.edu	37	2	16086111	16086111	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:16086111T>A	uc002rci.2	+	3	1587	c.1287T>A	c.(1285-1287)TAT>TAA	p.Y429*	MYCN_uc010yjr.1_Nonsense_Mutation_p.Y421*	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	429	Helix-loop-helix motif.				regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			CCACTGAGTATGTCCACTCCC	0.517			A		neuroblastoma								77	136					0	0	0.003610	0	0
FAM49A	81553	broad.mit.edu	37	2	16736355	16736355	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:16736355C>T	uc010exm.1	-	10	1038	c.890G>A	c.(889-891)GGG>GAG	p.G297E	FAM49A_uc002rck.1_Missense_Mutation_p.G297E	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	297						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			ATTTAGCAGCCCCTCCACACT	0.428													14	38					0	0	0.003163	0	0
SMC6	79677	broad.mit.edu	37	2	17898095	17898095	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:17898095A>G	uc002rco.2	-	14	1555	c.1259T>C	c.(1258-1260)TTT>TCT	p.F420S	SMC6_uc010exo.2_Missense_Mutation_p.F420S|SMC6_uc002rcn.2_Missense_Mutation_p.F420S|SMC6_uc002rcp.1_Missense_Mutation_p.F446S|SMC6_uc002rcq.2_Missense_Mutation_p.F446S|SMC6_uc002rcr.1_Missense_Mutation_p.F420S	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	420	Potential.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTGATTTTGAAAGGCCTTTAC	0.348													26	66					0	0	0.003330	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765522	18765522	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:18765522C>T	uc002rcz.2	-	6	1008	c.904_splice	c.e6-1	p.P302_splice	NT5C1B_uc002rcy.2_Splice_Site_p.P302_splice|NT5C1B_uc010exr.2_Splice_Site_p.P244_splice|NT5C1B_uc010yju.1_Splice_Site_p.P242_splice|NT5C1B_uc002rda.2_Splice_Site_p.P242_splice|NT5C1B_uc010yjv.1_Splice_Site_p.P319_splice|NT5C1B_uc010yjw.1_Splice_Site_p.P285_splice|NT5C1B_uc010exs.2_Splice_Site_p.P304_splice|NT5C1B_uc002rdb.1_Intron	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1						purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TGGGTTTGGGCTGCAGAGAGG	0.577													27	65					0	0	0.005443	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765932	18765933	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:18765932_18765933CC>TT	uc002rcz.2	-	5	854_855	c.750_751GG>AA	c.(748-753)AGGGGG>AGAAGG	p.G251R	NT5C1B_uc002rcy.2_Missense_Mutation_p.G251R|NT5C1B_uc010exr.2_Missense_Mutation_p.G193R|NT5C1B_uc010yju.1_Missense_Mutation_p.G191R|NT5C1B_uc002rda.2_Missense_Mutation_p.G191R|NT5C1B_uc010yjv.1_Missense_Mutation_p.G268R|NT5C1B_uc010yjw.1_Missense_Mutation_p.G234R|NT5C1B_uc010exs.2_Missense_Mutation_p.G253R|NT5C1B_uc002rdb.1_Missense_Mutation_p.G43R	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	251					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GGGTAGATCCCCCTGCGCTGGC	0.673													4	14					0	0	0.004672	0	0
SDC1	6382	broad.mit.edu	37	2	20403772	20403773	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:20403772_20403773GG>AA	uc002rdo.1	-	3	727_728	c.428_429CC>TT	c.(427-429)ACC>ATT	p.T143I	SDC1_uc002rdp.1_Missense_Mutation_p.T143I|SDC1_uc010exv.2_Missense_Mutation_p.T143I|SDC1_uc010exw.1_RNA	NM_002997	NP_002988	P18827	SDC1_HUMAN	syndecan 1 precursor	143	Extracellular (Potential).				lipid metabolic process|lipoprotein metabolic process|myoblast development|striated muscle cell development	cytoplasm|extracellular region|focal adhesion|integral to plasma membrane	cytoskeletal protein binding|protein C-terminus binding			ovary(4)|skin(1)	5	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)			OV - Ovarian serous cystadenocarcinoma(76;0.221)		CCTGGGCCGTGGTGGCTGTGGT	0.688													31	84					0	0	0.004672	0	0
APOB	338	broad.mit.edu	37	2	21225258	21225258	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:21225258T>C	uc002red.2	-	29	13164	c.13036A>G	c.(13036-13038)AAA>GAA	p.K4346E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4346					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCAACAATTTAAAAACATAT	0.299													166	349					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21234846	21234846	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:21234846C>T	uc002red.2	-	26	5022	c.4894G>A	c.(4894-4896)GGC>AGC	p.G1632S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1632					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGTCAGTGCCTAAGATGTCA	0.438													218	394					0	0	0.003610	0	0
ASXL2	55252	broad.mit.edu	37	2	25966191	25966191	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:25966191C>T	uc002rgs.2	-	12	3236	c.3015G>A	c.(3013-3015)GAG>GAA	p.E1005E	ASXL2_uc002rgt.1_Intron	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	1005					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CATTAACTTCCTCTCTGGTGC	0.507													15	31					0	0	0.003163	0	0
C2orf53	339779	broad.mit.edu	37	2	27360240	27360240	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27360240C>T	uc002rjb.2	-	3	1538	c.958G>A	c.(958-960)GAA>AAA	p.E320K	PREB_uc002rix.1_5'Flank|PREB_uc002riy.1_5'Flank|PREB_uc002riz.1_5'Flank|PREB_uc002rja.1_5'Flank	NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	320											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCCTGCTTCCTTCGGCCTT	0.667													29	46					0	0	0.005443	0	0
C2orf53	339779	broad.mit.edu	37	2	27360391	27360391	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27360391C>T	uc002rjb.2	-	3	1387	c.807G>A	c.(805-807)AGG>AGA	p.R269R	PREB_uc002rix.1_5'Flank|PREB_uc002riy.1_5'Flank|PREB_uc002riz.1_5'Flank|PREB_uc002rja.1_5'Flank	NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	269											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGGTCCAGTCCTGTACCTGG	0.667													23	33					0	0	0.002780	0	0
TCF23	150921	broad.mit.edu	37	2	27372124	27372124	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27372124G>C	uc010ylg.1	+	1	123	c.123G>C	c.(121-123)AGG>AGC	p.R41S		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	41					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCAGGACAAGGCAGGACCCGT	0.662													3	6					0	0	0.004672	0	0
TCF23	150921	broad.mit.edu	37	2	27375592	27375592	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27375592C>T	uc010ylg.1	+	3	502	c.502C>T	c.(502-504)CTG>TTG	p.L168L		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	168					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGCTGGAGGCCTGGGGTACTC	0.567													14	47					0	0	0.003163	0	0
SLC30A3	7781	broad.mit.edu	37	2	27481762	27481762	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27481762T>C	uc002rjk.2	-	2	322	c.136A>G	c.(136-138)AAA>GAA	p.K46E	SLC30A3_uc002rjj.2_5'Flank|SLC30A3_uc010ylh.1_Missense_Mutation_p.K41E	NM_003459	NP_003450	Q99726	ZNT3_HUMAN	solute carrier family 30 (zinc transporter),	46	Cytoplasmic (Potential).				regulation of sequestering of zinc ion	cell junction|integral to plasma membrane|late endosome|membrane fraction|synaptic vesicle membrane	zinc transporting ATPase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCACAGGTTTGGACTCCTCA	0.637													17	30					0	0	0.006122	0	0
TRIM54	57159	broad.mit.edu	37	2	27505700	27505700	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27505700C>T	uc002rjo.2	+	1	101	c.101C>T	c.(100-102)TCC>TTC	p.S34F	TRIM54_uc002rjn.2_Missense_Mutation_p.S34F	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	34	RING-type.				cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAGATGTTCTCCAAACCAGTG	0.577													70	158					0	0	0.003610	0	0
TRIM54	57159	broad.mit.edu	37	2	27521505	27521505	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27521505C>T	uc002rjo.2	+	2	239	c.239C>T	c.(238-240)TCG>TTG	p.S80L	TRIM54_uc002rjn.2_Missense_Mutation_p.S80L	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	80	RING-type.				cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGCTGCCCATCGTGCAGGCAT	0.572													11	37					0	0	0.000978	0	0
ZNF513	130557	broad.mit.edu	37	2	27603104	27603104	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27603104C>T	uc002rkk.2	-	2	267	c.67G>A	c.(67-69)GAC>AAC	p.D23N	ZNF513_uc002rkj.2_5'UTR	NM_144631	NP_653232	Q8N8E2	ZN513_HUMAN	zinc finger protein 513	23					regulation of transcription, DNA-dependent|response to stimulus|retina development in camera-type eye|transcription, DNA-dependent|visual perception	nucleus	transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCGAGGGAGTCTTCAGTATCC	0.577													34	82					0	0	0.009718	0	0
GCKR	2646	broad.mit.edu	37	2	27719829	27719829	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27719829G>A	uc002rky.2	+	1	124	c.58G>A	c.(58-60)GAG>AAG	p.E20K	FNDC4_uc002rkx.2_5'Flank|GCKR_uc010ezd.2_Missense_Mutation_p.E20K|GCKR_uc010ylu.1_5'UTR	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	20					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TGGCAAGTGGGAGGTGAGACC	0.527													17	32					0	0	0.010504	0	0
GPN1	11321	broad.mit.edu	37	2	27858050	27858050	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:27858050C>T	uc010ymc.1	+	7	536	c.515C>T	c.(514-516)TCG>TTG	p.S172L	ZNF512_uc010yly.1_RNA|GPN1_uc010ezf.2_Missense_Mutation_p.S146L|GPN1_uc010yma.1_Missense_Mutation_p.S79L|GPN1_uc010ymb.1_Missense_Mutation_p.S63L|GPN1_uc010ymd.1_Missense_Mutation_p.S53L|GPN1_uc010yme.1_Missense_Mutation_p.S172L|GPN1_uc010ezg.1_Missense_Mutation_p.S53L	NM_007266	NP_009197	Q9HCN4	GPN1_HUMAN	GPN-loop GTPase 1 isoform a	158						cytoplasm	GTP binding|nucleoside-triphosphatase activity|protein binding				0						ATGGACACATCGAGAAGTACC	0.448													19	43					0	0	0.001882	0	0
PLB1	151056	broad.mit.edu	37	2	28823676	28823676	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:28823676G>A	uc002rmb.1	+	36	2475	c.2475G>A	c.(2473-2475)GAG>GAA	p.E825E	PLB1_uc010ezj.1_Silent_p.E814E|PLB1_uc002rme.1_5'Flank	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	825	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|3.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TCTTTCTCAGGGATCTTATGA	0.294													24	58					0	0	0.005443	0	0
EHD3	30845	broad.mit.edu	37	2	31489531	31489532	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:31489531_31489532CC>AT	uc002rnu.2	+	6	2177_2178	c.1569_1570CC>AT	c.(1567-1572)GCCCAC>GCATAC	p.H524Y	EHD3_uc010ymt.1_3'UTR	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	524	EH.				blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					AGCTGCCTGCCCACCTCCTGCC	0.589													23	47					0	0	0.004672	0	0
YIPF4	84272	broad.mit.edu	37	2	32517334	32517334	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:32517334G>A	uc002rok.2	+	3	589	c.322G>A	c.(322-324)GTG>ATG	p.V108M		NM_032312	NP_115688	Q9BSR8	YIPF4_HUMAN	Yip1 domain family, member 4	108						endoplasmic reticulum|integral to membrane	protein binding				0	Acute lymphoblastic leukemia(172;0.155)					TAATAGACAAGTGGTGAGAGA	0.343													10	35					0	0	0.000978	0	0
LTBP1	4052	broad.mit.edu	37	2	33500068	33500068	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:33500068C>T	uc002ros.2	+	17	2783	c.2783C>T	c.(2782-2784)TCC>TTC	p.S928F	LTBP1_uc002rot.2_Missense_Mutation_p.S602F|LTBP1_uc002rou.2_Missense_Mutation_p.S601F|LTBP1_uc002rov.2_Missense_Mutation_p.S548F|LTBP1_uc010ymz.1_Missense_Mutation_p.S601F|LTBP1_uc010yna.1_Missense_Mutation_p.S548F	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	927	EGF-like 5; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CACCTCTGCTCCCAGGGCCGC	0.438													23	52					0	0	0.002299	0	0
HEATR5B	54497	broad.mit.edu	37	2	37230775	37230775	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:37230775G>A	uc002rpp.1	-	31	5056	c.4960C>T	c.(4960-4962)CCA>TCA	p.P1654S	HEATR5B_uc002rpo.1_5'Flank|HEATR5B_uc010ezy.1_Missense_Mutation_p.P238S	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1654							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				ACAGATGATGGATTCCAGGTC	0.373													11	29					0	0	0.008291	0	0
HEATR5B	54497	broad.mit.edu	37	2	37235782	37235782	+	Silent	SNP	G	A	A	rs139581322		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:37235782G>A	uc002rpp.1	-	28	4590	c.4494C>T	c.(4492-4494)GCC>GCT	p.A1498A	HEATR5B_uc010ezy.1_Silent_p.A82A|HEATR5B_uc002rpq.3_Silent_p.A82A	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1498							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TAGAAAATTCGGCTGGTAAAG	0.383													15	46					0	0	0.003163	0	0
HEATR5B	54497	broad.mit.edu	37	2	37265141	37265141	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:37265141G>A	uc002rpp.1	-	21	3169	c.3073C>T	c.(3073-3075)CGT>TGT	p.R1025C		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1025							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				CAAGAGGAACGAATTGTAGAA	0.363													21	17					0	0	0.008361	0	0
DHX57	90957	broad.mit.edu	37	2	39029908	39029908	+	Silent	SNP	G	A	A	rs146662521	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:39029908G>A	uc002rrf.2	-	23	4065	c.3966C>T	c.(3964-3966)TTC>TTT	p.F1322F	DHX57_uc002rrd.3_Silent_p.F661F|DHX57_uc002rre.2_Silent_p.F755F	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	1322							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				GGGAGACAACGAACTCTCCTC	0.507													39	84					0	0	0.005524	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43871886	43871886	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:43871886T>C	uc010yny.1	+	2	157	c.74T>C	c.(73-75)ATG>ACG	p.M25T	PLEKHH2_uc002rte.3_Missense_Mutation_p.M25T|PLEKHH2_uc002rtf.3_Missense_Mutation_p.M25T	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	25	Potential.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TCCCAACTCATGAAATTTAGA	0.383													79	179					0	0	0.003610	0	0
LRPPRC	10128	broad.mit.edu	37	2	44200775	44200775	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:44200775A>G	uc002rtr.2	-	11	1398	c.1340T>C	c.(1339-1341)GTT>GCT	p.V447A	LRPPRC_uc010yob.1_Missense_Mutation_p.V347A	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	447	PPR 8.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCGACGTCCAACTAGCAATGG	0.403													148	313					0	0	0.003610	0	0
LHCGR	3973	broad.mit.edu	37	2	48925938	48925938	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:48925938C>T	uc002rwu.3	-	9	752	c.682G>A	c.(682-684)GAT>AAT	p.D228N	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	228	Extracellular (Potential).|LRR 6.				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	GAAGAAATATCCCTGAACAAT	0.289									Familial_Male-Limited_Precocious_Puberty				17	26					0	0	0.006122	0	0
CCDC85A	114800	broad.mit.edu	37	2	56611444	56611444	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:56611444G>A	uc002rzn.2	+	6	2118	c.1616G>A	c.(1615-1617)GGA>GAA	p.G539E		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	539										breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TCGTGTCCTGGAATTAGGCAA	0.408													15	46					0	0	0.006122	0	0
KIAA1841	84542	broad.mit.edu	37	2	61304125	61304125	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:61304125C>T	uc002saw.3	+	6	805	c.502C>T	c.(502-504)CTT>TTT	p.L168F	KIAA1841_uc002sax.3_Missense_Mutation_p.L22F|KIAA1841_uc002say.2_Missense_Mutation_p.L168F|KIAA1841_uc002sav.3_Missense_Mutation_p.L168F	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	168											0			Epithelial(17;0.193)			CCCGCGAGATCTTTTGATATC	0.373													28	69					0	0	0.006320	0	0
KIAA1841	84542	broad.mit.edu	37	2	61308628	61308628	+	Silent	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:61308628T>C	uc002saw.3	+	7	1015	c.712T>C	c.(712-714)TTA>CTA	p.L238L	KIAA1841_uc002sax.3_Silent_p.L92L|KIAA1841_uc002say.2_Silent_p.L238L|KIAA1841_uc002sav.3_Silent_p.L238L	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	238											0			Epithelial(17;0.193)			TTCGGAGTTTTTAAAAATGGA	0.308													33	75					0	0	0.003755	0	0
EHBP1	23301	broad.mit.edu	37	2	63175992	63175992	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:63175992A>C	uc002sby.2	+	14	2598	c.2116A>C	c.(2116-2118)AAG>CAG	p.K706Q	EHBP1_uc010fcp.2_Missense_Mutation_p.K671Q|EHBP1_uc002sbz.2_Missense_Mutation_p.K671Q|EHBP1_uc002scb.2_Missense_Mutation_p.K671Q	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	706						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			TAGTGATAAGAAGAAGGATAT	0.358									Hereditary_Prostate_Cancer				8	25					0	0	0.003080	0	0
CEP68	23177	broad.mit.edu	37	2	65296886	65296886	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:65296886C>T	uc002sdl.3	+	2	522	c.308C>T	c.(307-309)CCT>CTT	p.P103L	CEP68_uc002sdj.2_Missense_Mutation_p.P103L|CEP68_uc010yqb.1_Missense_Mutation_p.P103L|CEP68_uc002sdk.3_Missense_Mutation_p.P103L|CEP68_uc010yqc.1_Missense_Mutation_p.P103L|CEP68_uc010yqd.1_Missense_Mutation_p.P103L	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	centrosomal protein 68kDa	103					centrosome organization	centrosome				skin(1)	1						AGTGGCCTGCCTCCTGCCACC	0.607													39	69					0	0	0.004878	0	0
BMP10	27302	broad.mit.edu	37	2	69093461	69093461	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:69093461C>T	uc002sez.1	-	2	736	c.577G>A	c.(577-579)GGA>AGA	p.G193R		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	193					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						CTGTTGGTTCCATATATCTCC	0.483													15	61					0	0	0.003163	0	0
AAK1	22848	broad.mit.edu	37	2	69759266	69759266	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:69759266C>T	uc002sfp.2	-	6	1068	c.563G>A	c.(562-564)GGC>GAC	p.G188D	AAK1_uc010fdk.2_Missense_Mutation_p.G188D|AAK1_uc010yqm.1_Missense_Mutation_p.G188D	NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	188	Protein kinase.					coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						GACATAGTGGCCTCGGTCATG	0.423													21	49					0	0	0.008871	0	0
ASPRV1	151516	broad.mit.edu	37	2	70187831	70187831	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:70187831C>T	uc002sfz.3	-	1	1567	c.990G>A	c.(988-990)GAG>GAA	p.E330E		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	330	Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						AGGAGGGGTCCTCCTCTATGA	0.552													37	92					0	0	0.002522	0	0
ADD2	119	broad.mit.edu	37	2	70931583	70931583	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:70931583C>T	uc002sgz.2	-	4	657	c.192G>A	c.(190-192)AGG>AGA	p.R64R	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.R64R|ADD2_uc002sha.2_Silent_p.R64R|ADD2_uc002sgx.2_Silent_p.R64R|ADD2_uc010fdt.1_Silent_p.R64R|ADD2_uc002shc.1_Silent_p.R64R|ADD2_uc002shd.1_Silent_p.R64R|ADD2_uc010fdu.1_Silent_p.R80R	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	64					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CCAGCTCCTCCCTGAAAGACT	0.607													21	33					0	0	0.002299	0	0
DYSF	8291	broad.mit.edu	37	2	71781022	71781022	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:71781022C>T	uc002sie.2	+	21	2392	c.2016C>T	c.(2014-2016)ATC>ATT	p.I672I	DYSF_uc010feg.2_Silent_p.I703I|DYSF_uc010feh.2_Silent_p.I658I|DYSF_uc002sig.3_Silent_p.I658I|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.I672I|DYSF_uc010fef.2_Silent_p.I689I|DYSF_uc010fei.2_Silent_p.I689I|DYSF_uc010fek.2_Silent_p.I690I|DYSF_uc010fej.2_Silent_p.I659I|DYSF_uc010fel.2_Silent_p.I659I|DYSF_uc010feo.2_Silent_p.I704I|DYSF_uc010fem.2_Silent_p.I673I|DYSF_uc010fen.2_Silent_p.I690I|DYSF_uc002sif.2_Silent_p.I673I	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	672	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GCCATAGAATCGAGACTCAGA	0.552													14	33					0	0	0.004990	0	0
DYSF	8291	broad.mit.edu	37	2	71827912	71827912	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:71827912G>A	uc002sie.2	+	34	4159	c.3783G>A	c.(3781-3783)ACG>ACA	p.T1261T	DYSF_uc010feg.2_Silent_p.T1292T|DYSF_uc010feh.2_Silent_p.T1247T|DYSF_uc002sig.3_Silent_p.T1247T|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.T1261T|DYSF_uc010fef.2_Silent_p.T1278T|DYSF_uc010fei.2_Silent_p.T1278T|DYSF_uc010fek.2_Silent_p.T1279T|DYSF_uc010fej.2_Silent_p.T1248T|DYSF_uc010fel.2_Silent_p.T1248T|DYSF_uc010feo.2_Silent_p.T1293T|DYSF_uc010fem.2_Silent_p.T1262T|DYSF_uc010fen.2_Silent_p.T1279T|DYSF_uc002sif.2_Silent_p.T1262T|DYSF_uc010yqy.1_Silent_p.T142T|DYSF_uc010yqz.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1261	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TCCCACTGACGAGGGGCAGCC	0.602													44	100					0	0	0.003214	0	0
CYP26B1	56603	broad.mit.edu	37	2	72361998	72361998	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:72361998G>A	uc002sih.1	-	4	753	c.753C>T	c.(751-753)ATC>ATT	p.I251I	CYP26B1_uc010yra.1_Silent_p.I234I|CYP26B1_uc010yrb.1_Silent_p.I176I	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	251					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						GCTTCTCCCGGATGGCCTTCT	0.607													16	37					0	0	0.007413	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73302669	73302669	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:73302669G>A	uc002siu.3	-	5	2183	c.1942C>T	c.(1942-1944)CCC>TCC	p.P648S	RAB11FIP5_uc002sis.3_Silent_p.S26S|RAB11FIP5_uc002sit.3_Missense_Mutation_p.P570S	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	648	FIP-RBD.				protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						GGGCCCGGGGGGATCTGCAGC	0.637													16	55					0	0	0.001882	0	0
ALMS1	7840	broad.mit.edu	37	2	73679862	73679862	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:73679862G>A	uc002sje.1	+	10	6322	c.6211G>A	c.(6211-6213)GGT>AGT	p.G2071S	ALMS1_uc002sjf.1_Missense_Mutation_p.G2027S|ALMS1_uc002sjg.2_Missense_Mutation_p.G1457S|ALMS1_uc002sjh.1_Missense_Mutation_p.G1457S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2069	32.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TCAAAGTAAAGGTATTCTAAA	0.363													11	40					0	0	0.000978	0	0
C2orf78	388960	broad.mit.edu	37	2	74043122	74043122	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:74043122G>A	uc002sjr.1	+	3	1893	c.1772G>A	c.(1771-1773)GGG>GAG	p.G591E		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	591	Lys-rich.									ovary(2)	2						AAGCAGTCAGGGAAAAAAGTC	0.443													10	24					0	0	0.008291	0	0
TET3	200424	broad.mit.edu	37	2	74274486	74274486	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:74274486C>T	uc002skb.3	+	1	1037	c.1037C>T	c.(1036-1038)CCT>CTT	p.P346L	TET3_uc010fez.1_Missense_Mutation_p.P346L	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	346							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TTCAAGCGGCCTGAGGCCCTG	0.642													12	27					0	0	0.000978	0	0
TET3	200424	broad.mit.edu	37	2	74328497	74328497	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:74328497C>T	uc002skb.3	+	9	4177	c.4177C>T	c.(4177-4179)CCC>TCC	p.P1393S		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	1393							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CTTGGCTGGGCCCAGCCTGAC	0.637													16	40					0	0	0.004007	0	0
SLC4A5	57835	broad.mit.edu	37	2	74475491	74475491	+	Silent	SNP	G	A	A	rs148607545		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:74475491G>A	uc002sko.1	-	13	1778	c.1776C>T	c.(1774-1776)TTC>TTT	p.F592F	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.F592F|SLC4A5_uc010ffc.1_Silent_p.F592F|SLC4A5_uc002skp.1_Silent_p.F528F|SLC4A5_uc002sks.1_Silent_p.F592F	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	592	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TGCTGAAGTCGAAGAGGAGCT	0.592													36	61					0	0	0.004878	0	0
INO80B	83444	broad.mit.edu	37	2	74684951	74684951	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:74684951G>A	uc002slg.2	+	5	1076	c.1031G>A	c.(1030-1032)GGG>GAG	p.G344E	INO80B_uc002slf.1_3'UTR|INO80B_uc010yrr.1_Missense_Mutation_p.G316E|WBP1_uc002slh.1_Intron|INO80B_uc002sli.1_RNA|INO80B_uc010yrs.1_Missense_Mutation_p.G362E|WBP1_uc002slj.1_5'Flank|WBP1_uc002slk.1_5'Flank|WBP1_uc002sll.1_5'Flank	NM_031288	NP_112578	Q9C086	IN80B_HUMAN	high mobility group AT-hook 1-like 4	344					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex|nucleolus	metal ion binding|protein binding			pancreas(1)	1						ATGCGGCTGGGGGGGCCCGAG	0.662													16	34					0	0	0.006122	0	0
REG3G	130120	broad.mit.edu	37	2	79255393	79255393	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:79255393C>T	uc002snw.2	+	6	604	c.519C>T	c.(517-519)TTC>TTT	p.F173F	REG3G_uc002snx.2_Silent_p.F173F|REG3G_uc010ffu.2_Silent_p.F127F	NM_198448	NP_940850	Q6UW15	REG3G_HUMAN	regenerating islet-derived 3 gamma precursor	173					acute-phase response	extracellular region	sugar binding				0						TCTGCAAGTTCAAGGACTAGG	0.478													20	54					0	0	0.001882	0	0
POLR1A	25885	broad.mit.edu	37	2	86327194	86327194	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:86327194G>A	uc002sqs.2	-	2	558	c.179C>T	c.(178-180)TCC>TTC	p.S60F	POLR1A_uc002sqv.2_Missense_Mutation_p.S60F	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	60					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						CACCTCTTTGGAATCTGCAGG	0.527													17	45					0	0	0.004990	0	0
REEP1	65055	broad.mit.edu	37	2	86481850	86481850	+	Silent	SNP	C	T	T	rs141929755		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:86481850C>T	uc002srh.3	-	4	414	c.270G>A	c.(268-270)AAG>AAA	p.K90K	REEP1_uc010ytg.1_Silent_p.K69K|REEP1_uc010yth.1_Silent_p.K63K|REEP1_uc010yti.1_Intron	NM_022912	NP_075063	Q9H902	REEP1_HUMAN	receptor accessory protein 1 isoform 2	90					cell death|protein insertion into membrane	integral to membrane|mitochondrial membrane	olfactory receptor binding				0						GATGTACAAACTTCCTGTACA	0.388													28	38					0	0	0.009535	0	0
SMYD1	150572	broad.mit.edu	37	2	88405935	88405935	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:88405935C>T	uc002ssr.2	+	8	1075	c.1073C>T	c.(1072-1074)TCG>TTG	p.S358L	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.S54L	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	358					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AGCATTGTTTCGGAGGTCCTT	0.522													22	51					0	0	0.002780	0	0
FABP1	2168	broad.mit.edu	37	2	88425840	88425840	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:88425840C>T	uc002sst.1	-	2	137	c.95G>A	c.(94-96)GGG>GAG	p.G32E	FABP1_uc002ssu.2_Missense_Mutation_p.G32E	NM_001443	NP_001434	P07148	FABPL_HUMAN	fatty acid binding protein 1, liver	32					organ morphogenesis						0						GATATCCTTCCCCTTCTGGAT	0.522													64	142					0	0	0.003610	0	0
THNSL2	55258	broad.mit.edu	37	2	88472870	88472870	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:88472870C>T	uc002ssz.3	+	2	354	c.201C>T	c.(199-201)CTC>CTT	p.L67L	THNSL2_uc002ssv.2_Intron|THNSL2_uc002ssw.3_Silent_p.L67L|THNSL2_uc002ssx.3_Silent_p.L35L|THNSL2_uc002sta.3_Intron|THNSL2_uc002ssy.3_Silent_p.L67L	NM_018271	NP_060741	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2	67					threonine biosynthetic process		threonine synthase activity			ovary(1)	1						GCTCTGAGCTCCTTCCAAAAG	0.522													8	36					0	0	0.003080	0	0
TMEM131	23505	broad.mit.edu	37	2	98422129	98422129	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:98422129G>A	uc002syh.3	-	20	2322	c.2093C>T	c.(2092-2094)TCC>TTC	p.S698F		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	698						integral to membrane				ovary(4)|central_nervous_system(2)	6						CTGTGAGAAGGAATTCATAAT	0.333													41	106					0	0	0.006999	0	0
VWA3B	200403	broad.mit.edu	37	2	98853161	98853161	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:98853161G>A	uc002syo.2	+	19	2905	c.2641G>A	c.(2641-2643)GAC>AAC	p.D881N	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.D400N|VWA3B_uc002sym.2_Missense_Mutation_p.D881N|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.D538N|VWA3B_uc002syp.1_Missense_Mutation_p.D273N|VWA3B_uc002syq.1_Missense_Mutation_p.D157N|VWA3B_uc002syr.1_Missense_Mutation_p.D198N|VWA3B_uc010fih.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	881										ovary(3)|large_intestine(2)|skin(1)	6						TCCCGTCCTGGACAAGCATGT	0.488													58	146					0	0	0.003610	0	0
INPP4A	3631	broad.mit.edu	37	2	99156085	99156085	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:99156085C>T	uc002syy.2	+	10	1158	c.765C>T	c.(763-765)TCC>TCT	p.S255S	INPP4A_uc010yvj.1_Silent_p.S255S|INPP4A_uc010yvk.1_Silent_p.S255S|INPP4A_uc002syx.2_Silent_p.S255S|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	255					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						GCGTGCTCTCCCTGCACGTGC	0.567													24	45					0	0	0.003954	0	0
REV1	51455	broad.mit.edu	37	2	100020940	100020940	+	Silent	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:100020940T>G	uc002tad.2	-	18	3224	c.3012A>C	c.(3010-3012)GGA>GGC	p.G1004G	REV1_uc002tac.2_Silent_p.G1003G	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	1004					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						TTAAATTTATTCCTGCGTCAC	0.423								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					31	92					0	0	0.009535	0	0
CHST10	9486	broad.mit.edu	37	2	101010058	101010058	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:101010058G>A	uc002tam.2	-	7	1079	c.720C>T	c.(718-720)TTC>TTT	p.F240F		NM_004854	NP_004845	O43529	CHSTA_HUMAN	HNK-1 sulfotransferase	240	Lumenal (Potential).				carbohydrate biosynthetic process|cell adhesion	Golgi membrane|integral to membrane|membrane fraction				ovary(1)	1						GGTAGCGCACGAAATCTTCAA	0.542													57	138					0	0	0.003610	0	0
IL1R1	3554	broad.mit.edu	37	2	102781425	102781425	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:102781425C>T	uc002tbq.2	+	4	571	c.253C>T	c.(253-255)CCT>TCT	p.P85S	IL1R1_uc010fix.2_Missense_Mutation_p.P85S|IL1R1_uc002tbp.2_Missense_Mutation_p.P85S|IL1R1_uc002tbr.2_Missense_Mutation_p.P85S	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	85	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	TTGGTTTGTTCCTGCTAAGGT	0.398													9	36					0	0	0.008291	0	0
IL1RL2	8808	broad.mit.edu	37	2	102849490	102849490	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:102849490G>A	uc002tbs.2	+	10	1329	c.1203G>A	c.(1201-1203)GTG>GTA	p.V401V	IL1RL2_uc002tbt.2_Silent_p.V283V	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	401	TIR.|Cytoplasmic (Potential).				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						GGCATGCCGTGGATGCCCTGG	0.483													26	58					0	0	0.005443	0	0
UXS1	80146	broad.mit.edu	37	2	106746178	106746178	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:106746178G>A	uc002tdm.2	-	7	612	c.514C>T	c.(514-516)CCT>TCT	p.P172S	UXS1_uc002tdl.2_Missense_Mutation_p.P4S|UXS1_uc002tdn.2_Missense_Mutation_p.P177S|UXS1_uc002tdo.2_Missense_Mutation_p.P115S|UXS1_uc010ywh.1_Intron	NM_025076	NP_079352	Q8NBZ7	UXS1_HUMAN	UDP-glucuronate decarboxylase 1	172	Lumenal (Potential).				cellular metabolic process	Golgi cisterna membrane|integral to membrane	coenzyme binding|UDP-glucuronate decarboxylase activity			ovary(2)	2						GTCTTGATAGGATTATACATG	0.378													6	21					0	0	0.004482	0	0
RGPD3	653489	broad.mit.edu	37	2	107029624	107029624	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:107029624C>T	uc010ywi.1	-	22	5239	c.5182G>A	c.(5182-5184)GAA>AAA	p.E1728K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1728	GRIP.				intracellular transport		binding			ovary(1)	1						CTCTCTCTTTCACTACCTGGC	0.443													70	164					0	0	0.003610	0	0
RGPD3	653489	broad.mit.edu	37	2	107041433	107041433	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:107041433G>A	uc010ywi.1	-	20	3047	c.2990C>T	c.(2989-2991)TCA>TTA	p.S997L		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	997					intracellular transport		binding			ovary(1)	1						TCCAGCACCTGAAAATCCCTT	0.378													70	155					0	0	0.003610	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460137	107460137	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:107460137C>T	uc002tdq.2	-	2	416	c.297G>A	c.(295-297)TGG>TGA	p.W99*	ST6GAL2_uc002tdr.2_Nonsense_Mutation_p.W99*|ST6GAL2_uc002tds.3_Nonsense_Mutation_p.W99*	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	99	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GGGACTGGGCCCATTTCTGCA	0.587													24	50					0	0	0.003330	0	0
SH3RF3	344558	broad.mit.edu	37	2	109964283	109964283	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:109964283C>T	uc010ywt.1	+	2	727	c.727C>T	c.(727-729)CTC>TTC	p.L243F		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	243	SH3 1.						zinc ion binding			ovary(1)	1						ACAGGGCTTCCTCCCAGCCAG	0.567													7	33					0	0	0.003080	0	0
BUB1	699	broad.mit.edu	37	2	111419206	111419206	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:111419206G>A	uc002tgc.2	-	10	1282	c.1170C>T	c.(1168-1170)GCC>GCT	p.A390A	BUB1_uc010yxh.1_Silent_p.A370A|BUB1_uc010fkb.2_Silent_p.A390A|BUB1_uc002tgd.2_Silent_p.A390A	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	390					apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		TTACTGTCTGGGCTTTCAAAG	0.522													34	42					0	0	0.003271	0	0
IL1F7	27178	broad.mit.edu	37	2	113676317	113676317	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:113676317G>A	uc002tij.2	+	5	630	c.588G>A	c.(586-588)AGG>AGA	p.R196R	IL1F7_uc002tik.2_Silent_p.R175R|IL1F7_uc002til.2_Silent_p.R156R|IL1F7_uc002tim.2_Silent_p.R135R|IL1F7_uc002tin.2_Silent_p.R170R	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	196					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						TTGAGAACAGGAAACACATTG	0.493													16	27					0	0	0.004007	0	0
PSD4	23550	broad.mit.edu	37	2	113943683	113943683	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:113943683G>A	uc002tjc.2	+	5	1662	c.1479G>A	c.(1477-1479)TTG>TTA	p.L493L	PSD4_uc002tjd.2_Silent_p.L114L|PSD4_uc002tje.2_Silent_p.L464L|PSD4_uc002tjf.2_Silent_p.L114L	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	493					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CTTCACTCTTGGAGACGGATG	0.567													16	71					0	0	0.008871	0	0
DPP10	57628	broad.mit.edu	37	2	116101408	116101408	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:116101408C>T	uc002tla.1	+	3	648	c.191C>T	c.(190-192)TCG>TTG	p.S64L	DPP10_uc002tlb.1_Missense_Mutation_p.S14L|DPP10_uc002tlc.1_Missense_Mutation_p.S60L|DPP10_uc002tle.2_Missense_Mutation_p.S68L|DPP10_uc002tlf.1_Missense_Mutation_p.S57L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	64	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CTCACAAATTCGTCAGAAACC	0.348													17	54					0	0	0.008871	0	0
DPP10	57628	broad.mit.edu	37	2	116447276	116447276	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:116447276C>T	uc002tla.1	+	6	912	c.455C>T	c.(454-456)TCG>TTG	p.S152L	DPP10_uc002tlb.1_Missense_Mutation_p.S102L|DPP10_uc002tlc.1_Missense_Mutation_p.S148L|DPP10_uc002tle.2_Missense_Mutation_p.S156L|DPP10_uc002tlf.1_Missense_Mutation_p.S145L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	152	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TTTCATTATTCGTATACTGCT	0.264													6	11					0	0	0.001168	0	0
DPP10	57628	broad.mit.edu	37	2	116447454	116447454	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:116447454C>T	uc002tla.1	+	7	990	c.533C>T	c.(532-534)TCC>TTC	p.S178F	DPP10_uc002tlb.1_Missense_Mutation_p.S128F|DPP10_uc002tlc.1_Missense_Mutation_p.S174F|DPP10_uc002tle.2_Missense_Mutation_p.S182F|DPP10_uc002tlf.1_Missense_Mutation_p.S171F	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	178	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GTAGAGGACTCCGTCTTGCAG	0.443													34	86					0	0	0.007835	0	0
GLI2	2736	broad.mit.edu	37	2	121745958	121745958	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:121745958C>T	uc010flp.2	+	13	2498	c.2468C>T	c.(2467-2469)TCC>TTC	p.S823F	GLI2_uc002tmq.1_Missense_Mutation_p.S495F|GLI2_uc002tmr.1_Missense_Mutation_p.S478F|GLI2_uc002tmt.3_Missense_Mutation_p.S495F|GLI2_uc002tmu.3_Missense_Mutation_p.S478F	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	823	Ser-rich.				axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				AGCCGCCGCTCCTCCGGCATC	0.721													3	5					0	0	0.004672	0	0
TFCP2L1	29842	broad.mit.edu	37	2	121989422	121989422	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:121989422G>A	uc002tmx.2	-	13	1414	c.1321C>T	c.(1321-1323)CAT>TAT	p.H441Y	TFCP2L1_uc010flr.2_Intron|TFCP2L1_uc010flq.2_Intron	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	441					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					ACCACCACATGGATGCCCGTG	0.637													19	32					0	0	0.010504	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125530564	125530564	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:125530564C>T	uc002tno.2	+	17	3083	c.2719C>T	c.(2719-2721)CGA>TGA	p.R907*	CNTNAP5_uc010flu.2_Nonsense_Mutation_p.R908*	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	907	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GGGCCATTTTCGACTGCAGCT	0.537													46	107					0	0	0.003610	0	0
MYO7B	4648	broad.mit.edu	37	2	128331611	128331611	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:128331611C>T	uc002top.2	+	7	762	c.709C>T	c.(709-711)CTG>TTG	p.L237L		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	237	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GCAATTTCTCCTGGAGAAGTC	0.602													51	125					0	0	0.003610	0	0
WDR33	55339	broad.mit.edu	37	2	128476849	128476849	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:128476849G>A	uc002tpg.1	-	16	2933	c.2750C>T	c.(2749-2751)CCC>CTC	p.P917L		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	917					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CTGGTTGAAGGGGGCCCGGGG	0.512													57	119					0	0	0.003610	0	0
POTEE	445582	broad.mit.edu	37	2	131985849	131985849	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:131985849C>T	uc002tsn.2	+	5	1002	c.950C>T	c.(949-951)TCA>TTA	p.S317L	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	317	ANK 5.						ATP binding				0						TGTTGTGGATCAGCAAGTATA	0.358													26	67					0	0	0.002836	0	0
GPR39	2863	broad.mit.edu	37	2	133402928	133402928	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:133402928G>A	uc002ttl.2	+	2	1580	c.1111G>A	c.(1111-1113)GAG>AAG	p.E371K	LYPD1_uc002ttm.3_3'UTR|LYPD1_uc002ttn.2_3'UTR|LYPD1_uc002tto.2_3'UTR	NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	371	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						CGCCAACCACGAGAAGCGCCT	0.667													20	40					0	0	0.007413	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542082	133542082	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:133542082G>A	uc002ttp.2	-	14	2676	c.2302C>T	c.(2302-2304)CCT>TCT	p.P768S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	768							protein binding				0						TGCTGCTGAGGATTTTGTGTC	0.433													29	59					0	0	0.002096	0	0
NCKAP5	344148	broad.mit.edu	37	2	133751808	133751808	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:133751808C>T	uc002ttp.2	-	7	720	c.346G>A	c.(346-348)GAA>AAA	p.E116K	NCKAP5_uc002ttq.2_Missense_Mutation_p.E116K|NCKAP5_uc002tts.1_Missense_Mutation_p.E91K	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	116	Potential.						protein binding				0						ACTGTTTCTTCCATCCTGAGA	0.343													6	8					0	0	0.001168	0	0
TMEM163	81615	broad.mit.edu	37	2	135470837	135470837	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:135470837C>T	uc002ttx.2	-	2	321	c.255G>A	c.(253-255)AGG>AGA	p.R85R	TMEM163_uc002tty.2_RNA	NM_030923	NP_112185	Q8TC26	TM163_HUMAN	transmembrane protein 163	85						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(221;0.154)		ATGCCTTCTTCCTGTAGTTCT	0.502													53	88					0	0	0.003610	0	0
THSD7B	80731	broad.mit.edu	37	2	137990579	137990579	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:137990579G>A	uc002tva.1	+	8	1933	c.1933G>A	c.(1933-1935)GAC>AAC	p.D645N	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.D535N	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TTGTTCTGAGGACACATTGGT	0.512													27	54					0	0	0.005443	0	0
LRP1B	53353	broad.mit.edu	37	2	141122354	141122354	+	Splice_Site	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:141122354T>C	uc002tvj.1	-	72	11981	c.11009_splice	c.e72-1	p.G3670_splice		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B						protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TATTTCCTCCTTTATTTTAAA	0.378										TSP Lung(27;0.18)			35	86					0	0	0.005524	0	0
NEB	4703	broad.mit.edu	37	2	152350316	152350316	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:152350316C>T	uc010fnx.2	-	142	19268	c.19077G>A	c.(19075-19077)GTG>GTA	p.V6359V	NEB_uc002txr.2_Intron|RIF1_uc002txp.2_Intron|NEB_uc010zbz.1_Intron|NEB_uc002txq.2_Silent_p.V238V|NEB_uc010zca.1_Silent_p.V190V|NEB_uc010zcb.1_Intron	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6359	Nebulin 175.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GATTGCGTTTCACTCTTTCCA	0.398													5	9					0	0	0.001168	0	0
NEB	4703	broad.mit.edu	37	2	152404006	152404006	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:152404006C>T	uc010fnx.2	-	105	15392	c.15201G>A	c.(15199-15201)ATG>ATA	p.M5067I	NEB_uc002txr.2_Missense_Mutation_p.M1490I	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5067	Nebulin 139.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GCAGAGAGATCATGTGGCCCT	0.413													4	13					0	0	0.009096	0	0
NEB	4703	broad.mit.edu	37	2	152420119	152420119	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:152420119C>T	uc010fnx.2	-	91	13781	c.13590_splice	c.e91+1	p.A4530_splice	NEB_uc002txr.2_Splice_Site_p.A953_splice	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3						muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CATTTACTTACCGCACTCCTC	0.468													12	231					0	0	0.001855	0	0
FMNL2	114793	broad.mit.edu	37	2	153484972	153484972	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:153484972C>T	uc002tye.2	+	18	2692	c.2325C>T	c.(2323-2325)ATC>ATT	p.I775I	FMNL2_uc010fob.2_Silent_p.I231I|FMNL2_uc002tyf.2_Silent_p.I224I	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	775	FH2.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						TTAGTAAAATCGAGAGGCTCA	0.483													38	96					0	0	0.007835	0	0
NR4A2	4929	broad.mit.edu	37	2	157186171	157186171	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:157186171G>A	uc002tyz.3	-	3	950	c.528C>T	c.(526-528)TTC>TTT	p.F176F	NR4A2_uc002tyx.3_Silent_p.F113F|NR4A2_uc010zcf.1_Silent_p.F176F|NR4A2_uc010zcg.1_5'Flank	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	176	Pro-rich.				cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						GCTTAAAGGAGAAGAGGGAGA	0.637													55	154					0	0	0.003610	0	0
GPD2	2820	broad.mit.edu	37	2	157425915	157425915	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:157425915C>T	uc002tzf.3	+	11	1701	c.1341C>T	c.(1339-1341)ACC>ACT	p.T447T	GPD2_uc010zch.1_Silent_p.T220T|GPD2_uc002tzd.3_Silent_p.T447T|GPD2_uc002tze.1_RNA	NM_001083112	NP_001076581	P43304	GPDM_HUMAN	glycerol-3-phosphate dehydrogenase 2,	447					cellular lipid metabolic process	glycerol-3-phosphate dehydrogenase complex|mitochondrial inner membrane	calcium ion binding|sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity			ovary(1)	1						CAGAAGATACCATAAATGCTG	0.388													13	24					0	0	0.002450	0	0
CCDC148	130940	broad.mit.edu	37	2	159195377	159195377	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:159195377C>T	uc002tzq.2	-	7	888	c.625G>A	c.(625-627)GAA>AAA	p.E209K	CCDC148_uc002tzr.2_Missense_Mutation_p.E57K|CCDC148_uc010foh.2_Intron|CCDC148_uc010foi.1_Missense_Mutation_p.E156K|CCDC148_uc010foj.1_Missense_Mutation_p.E57K|CCDC148_uc010fok.1_Missense_Mutation_p.E123K|CCDC148_uc002tzs.1_Missense_Mutation_p.E209K	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	209										ovary(2)	2						ATGGGCAGTTCACTAAGCGGG	0.303													18	56					0	0	0.002299	0	0
LY75	4065	broad.mit.edu	37	2	160672034	160672034	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:160672034G>A	uc002ubc.3	-	31	4500	c.4431C>T	c.(4429-4431)ATC>ATT	p.I1477I	LY75_uc002ubb.3_Silent_p.I1477I|LY75_uc010fos.2_Silent_p.I1477I	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1477	Extracellular (Potential).|C-type lectin 9.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		CTTTCCATGGGATATAGTCAA	0.373													26	30					0	0	0.009535	0	0
LY75	4065	broad.mit.edu	37	2	160708785	160708785	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:160708785G>A	uc002ubc.3	-	21	2879	c.2810C>T	c.(2809-2811)TCG>TTG	p.S937L	LY75_uc002ubb.3_Missense_Mutation_p.S937L|LY75_uc010fos.2_Missense_Mutation_p.S937L	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	937	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTTCTCTAACGAAGAAACATT	0.373													17	41					0	0	0.004007	0	0
LY75	4065	broad.mit.edu	37	2	160729002	160729002	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:160729002C>T	uc002ubc.3	-	13	2146	c.2077G>A	c.(2077-2079)GAA>AAA	p.E693K	LY75_uc002ubb.3_Missense_Mutation_p.E693K|LY75_uc010fos.2_Missense_Mutation_p.E693K|LY75_uc010fot.1_Missense_Mutation_p.E693K	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	693	Extracellular (Potential).|C-type lectin 4.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TCCTTTATTTCATCCACATGG	0.378													34	76					0	0	0.003271	0	0
PLA2R1	22925	broad.mit.edu	37	2	160843670	160843670	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:160843670G>A	uc002ube.1	-	12	2241	c.2034C>T	c.(2032-2034)TTC>TTT	p.F678F	PLA2R1_uc010zcp.1_Silent_p.F678F|PLA2R1_uc002ubf.2_Silent_p.F678F	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	678	Extracellular (Potential).|C-type lectin 4.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GTATCACCTTGAAGCAACTGG	0.438													28	57					0	0	0.008361	0	0
SLC4A10	57282	broad.mit.edu	37	2	162661000	162661000	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:162661000G>A	uc002ubx.3	+	3	356	c.172G>A	c.(172-174)GGA>AGA	p.G58R	SLC4A10_uc010fpa.1_Missense_Mutation_p.G70R|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.G58R|SLC4A10_uc010zcs.1_Missense_Mutation_p.G69R	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	58	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						GCCCTTGGGAGGAAGAAAAAG	0.433													15	25					0	0	0.003163	0	0
DPP4	1803	broad.mit.edu	37	2	162875760	162875760	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:162875760C>T	uc002ubz.2	-	15	1832	c.1271G>A	c.(1270-1272)GGA>GAA	p.G424E	DPP4_uc010fpb.2_Missense_Mutation_p.G100E	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	424	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	TCCTGGCATTCCTTTATATTC	0.308													16	58					0	0	0.004007	0	0
IFIH1	64135	broad.mit.edu	37	2	163134738	163134738	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:163134738C>T	uc002uce.2	-	9	1964	c.1742G>A	c.(1741-1743)TGG>TAG	p.W581*		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	581					detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						TTGAATGGCCCATTGTTCATA	0.328													12	38					0	0	0.001368	0	0
KCNH7	90134	broad.mit.edu	37	2	163302698	163302698	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:163302698A>T	uc002uch.1	-	7	1596	c.1384T>A	c.(1384-1386)TTT>ATT	p.F462I	KCNH7_uc002uci.2_Missense_Mutation_p.F455I	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	462	Helical; Name=Segment S2; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TCTATGATAAACATAATATCC	0.363													16	28					0	0	0.004007	0	0
COBLL1	22837	broad.mit.edu	37	2	165551668	165551668	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:165551668G>A	uc010zcw.1	-	15	2673	c.2549C>T	c.(2548-2550)TCG>TTG	p.S850L	COBLL1_uc002ucp.2_Missense_Mutation_p.S783L|COBLL1_uc002ucq.2_Missense_Mutation_p.S745L|COBLL1_uc010zcx.1_Missense_Mutation_p.S791L|COBLL1_uc002ucn.2_Missense_Mutation_p.S211L|COBLL1_uc002uco.2_Missense_Mutation_p.S514L	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	821										ovary(2)|pancreas(1)	3						CCAGTCTTTCGATATTTCCAA	0.378													45	94					0	0	0.003214	0	0
SCN2A	6326	broad.mit.edu	37	2	166172039	166172039	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:166172039G>A	uc002udc.2	+	11	1732	c.1442G>A	c.(1441-1443)GGA>GAA	p.G481E	SCN2A_uc002udd.2_Missense_Mutation_p.G481E|SCN2A_uc002ude.2_Missense_Mutation_p.G481E	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	481					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GGTGGGATAGGAGTTTTTTCA	0.368													29	72					0	0	0.009535	0	0
SCN2A	6326	broad.mit.edu	37	2	166243496	166243496	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:166243496G>A	uc002udc.2	+	26	5082	c.4792G>A	c.(4792-4794)GAT>AAT	p.D1598N	SCN2A_uc002udd.2_Missense_Mutation_p.D1598N|SCN2A_uc002ude.2_Missense_Mutation_p.D1598N	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1598	Helical; Name=S3 of repeat IV; (Potential).|IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GAATATTTTTGATTTTGTGGT	0.338													20	67					0	0	0.002299	0	0
SCN2A	6326	broad.mit.edu	37	2	166243507	166243507	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:166243507G>A	uc002udc.2	+	26	5093	c.4803G>A	c.(4801-4803)GTG>GTA	p.V1601V	SCN2A_uc002udd.2_Silent_p.V1601V|SCN2A_uc002ude.2_Silent_p.V1601V	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1601	Helical; Name=S3 of repeat IV; (Potential).|IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATTTTGTGGTGGTCATTCTCT	0.333													25	63					0	0	0.005443	0	0
TTC21B	79809	broad.mit.edu	37	2	166805994	166805994	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:166805994G>A	uc002udk.2	-	3	305	c.172C>T	c.(172-174)CGA>TGA	p.R58*	TTC21B_uc002udl.2_Nonsense_Mutation_p.R58*|uc002udm.1_RNA	NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	58						cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						TCAAATTCTCGAAGAGCTTCT	0.308													28	96					0	0	0.006320	0	0
XIRP2	129446	broad.mit.edu	37	2	168099418	168099418	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:168099418C>T	uc002udx.2	+	8	1534	c.1516C>T	c.(1516-1518)CAT>TAT	p.H506Y	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.H331Y|XIRP2_uc010fpq.2_Missense_Mutation_p.H284Y|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	331					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAAACACATCCATCCTGAGTT	0.368													12	25					0	0	0.000978	0	0
XIRP2	129446	broad.mit.edu	37	2	168102837	168102837	+	Silent	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:168102837T>C	uc002udx.2	+	8	4953	c.4935T>C	c.(4933-4935)ACT>ACC	p.T1645T	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.T1470T|XIRP2_uc010fpq.2_Silent_p.T1423T|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1470					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ACAGATCAACTGAATTTCATG	0.323													13	37					0	0	0.001855	0	0
ABCB11	8647	broad.mit.edu	37	2	169788930	169788930	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:169788930C>T	uc002ueo.1	-	24	3296	c.3170G>A	c.(3169-3171)CGA>CAA	p.R1057Q	ABCB11_uc010zda.1_Missense_Mutation_p.R499Q|ABCB11_uc010zdb.1_Missense_Mutation_p.R533Q	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1057	Cytoplasmic (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	TGGGGGTTGTCGGTCCAGCAG	0.333													3	7					0	0	0.004672	0	0
C2orf77	129881	broad.mit.edu	37	2	170518802	170518802	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:170518802C>T	uc002ufe.2	-	5	901	c.807G>A	c.(805-807)AGG>AGA	p.R269R		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	269	Potential.										0						GAAACCGTCTCCTGCTTTCAT	0.284													37	188					0	0	0.002522	0	0
UBR3	130507	broad.mit.edu	37	2	170897478	170897478	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:170897478C>T	uc010zdi.1	+	32	4643	c.4643C>T	c.(4642-4644)CCA>CTA	p.P1548L	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Missense_Mutation_p.P369L|UBR3_uc002uft.3_Missense_Mutation_p.P405L|UBR3_uc010zdj.1_Missense_Mutation_p.P239L|UBR3_uc002ufu.3_Missense_Mutation_p.P54L	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1548					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						TTAATGATGCCACAACCCTTA	0.313													4	30					0	0	0.001168	0	0
UBR3	130507	broad.mit.edu	37	2	170917924	170917924	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:170917924C>T	uc010zdi.1	+	35	4990	c.4990C>T	c.(4990-4992)CTT>TTT	p.L1664F	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Missense_Mutation_p.L485F|UBR3_uc002uft.3_Missense_Mutation_p.L521F|UBR3_uc010zdj.1_Missense_Mutation_p.L355F|UBR3_uc002ufu.3_Missense_Mutation_p.L170F	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1664					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						TCAGCACCACCTTTTTGGGGA	0.348													42	94					0	0	0.003214	0	0
GAD1	2571	broad.mit.edu	37	2	171705805	171705805	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:171705805G>A	uc002ugi.2	+	12	1551	c.1129G>A	c.(1129-1131)GGA>AGA	p.G377R	GAD1_uc010fqc.2_5'UTR	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	377					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GGCTGCCTGGGGAGGTGGGCT	0.522													10	47					0	0	0.008291	0	0
EVX2	344191	broad.mit.edu	37	2	176948093	176948093	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:176948093C>T	uc010zeu.1	-	1	598	c.412G>A	c.(412-414)GAA>AAA	p.E138K		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	138						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		CCATTGTTTTCCTTAAGCTGA	0.677													3	9					0	0	0.009096	0	0
HOXD10	3236	broad.mit.edu	37	2	176983951	176983951	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:176983951T>C	uc002ukj.2	+	2	1085	c.1015T>C	c.(1015-1017)TTT>CTT	p.F339L		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	339						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		CAACCTCACGTTTTCTTAggt	0.463													19	23					0	0	0.010504	0	0
TTN	7273	broad.mit.edu	37	2	179426315	179426315	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179426315C>T	uc010zfg.1	-	275	77064	c.76840G>A	c.(76840-76842)GGA>AGA	p.G25614R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G19309R|TTN_uc010zfi.1_Missense_Mutation_p.G19242R|TTN_uc010zfj.1_Missense_Mutation_p.G19117R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26541							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGACTTCCTCCATCATTAACT	0.413													8	35					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179433173	179433173	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179433173C>T	uc010zfg.1	-	275	70206	c.69982G>A	c.(69982-69984)GGA>AGA	p.G23328R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G17023R|TTN_uc010zfi.1_Missense_Mutation_p.G16956R|TTN_uc010zfj.1_Missense_Mutation_p.G16831R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24255							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAACAGGTCCTTTTGGAGGA	0.408													10	33					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179440268	179440268	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179440268C>T	uc010zfg.1	-	275	63111	c.62887G>A	c.(62887-62889)GAA>AAA	p.E20963K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E14658K|TTN_uc010zfi.1_Missense_Mutation_p.E14591K|TTN_uc010zfj.1_Missense_Mutation_p.E14466K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21890							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGGTGCTTCAGAGGCTTTT	0.488													106	228					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179466205	179466205	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179466205C>T	uc010zfg.1	-	236	48039	c.47815G>A	c.(47815-47817)GGA>AGA	p.G15939R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G9634R|TTN_uc010zfi.1_Missense_Mutation_p.G9567R|TTN_uc010zfj.1_Missense_Mutation_p.G9442R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16866							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTCTCCTCCATCGTCGTCT	0.453													52	117					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179466620	179466620	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179466620C>T	uc010zfg.1	-	234	47811	c.47587G>A	c.(47587-47589)GAA>AAA	p.E15863K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E9558K|TTN_uc010zfi.1_Missense_Mutation_p.E9491K|TTN_uc010zfj.1_Missense_Mutation_p.E9366K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16790							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTGCATCTTCGGGTATGTCA	0.303													23	26					0	0	0.001882	0	0
TTN	7273	broad.mit.edu	37	2	179473616	179473616	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179473616G>A	uc010zfg.1	-	223	44642	c.44418C>T	c.(44416-44418)ATC>ATT	p.I14806I	uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I8501I|TTN_uc010zfi.1_Silent_p.I8434I|TTN_uc010zfj.1_Silent_p.I8309I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15733							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACAAAGTTGATTGGTGGTC	0.383													39	105					0	0	0.002522	0	0
TTN	7273	broad.mit.edu	37	2	179495906	179495906	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179495906C>T	uc010zfg.1	-	186	36389	c.36165G>A	c.(36163-36165)AAG>AAA	p.K12055K	TTN_uc010zfh.1_Silent_p.K5750K|TTN_uc010zfi.1_Silent_p.K5683K|TTN_uc010zfj.1_Silent_p.K5558K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12982							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTTATTTCCTTCCCATCCT	0.373													21	42					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179498051	179498051	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179498051G>A	uc010zfg.1	-	182	35469	c.35245C>T	c.(35245-35247)CGA>TGA	p.R11749*	TTN_uc010zfh.1_Nonsense_Mutation_p.R5444*|TTN_uc010zfi.1_Nonsense_Mutation_p.R5377*|TTN_uc010zfj.1_Nonsense_Mutation_p.R5252*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12676							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R11749T(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTATTAGTCGAGCTGAAATG	0.393													40	110					0	0	0.002522	0	0
TTN	7273	broad.mit.edu	37	2	179500199	179500199	+	Missense_Mutation	SNP	C	T	T	rs55723264		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179500199C>T	uc010zfg.1	-	176	34372	c.34148G>A	c.(34147-34149)GGA>GAA	p.G11383E	TTN_uc010zfh.1_Missense_Mutation_p.G5078E|TTN_uc010zfi.1_Missense_Mutation_p.G5011E|TTN_uc010zfj.1_Missense_Mutation_p.G4886E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12310							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTATCTTTTTCCTTCAATTTC	0.338													4	14					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179542396	179542396	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179542396C>A	uc010zfg.1	-	143	30735	c.30511G>T	c.(30511-30513)GAA>TAA	p.E10171*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.E6832*|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11098							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGACTTCTTCTTCAGGTACA	0.443													25	49					5.45024e-15	6.08302e-15	0.003330	1	0
TTN	7273	broad.mit.edu	37	2	179584810	179584810	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179584810G>A	uc010zfg.1	-	78	20051	c.19827C>T	c.(19825-19827)CTC>CTT	p.L6609L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L3270L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7536							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCCCAGCTGGAGGGTTGCAA	0.418													22	57					0	0	0.001882	0	0
TTN	7273	broad.mit.edu	37	2	179585824	179585824	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179585824G>A	uc010zfg.1	-	76	19414	c.19190C>T	c.(19189-19191)TCA>TTA	p.S6397L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3058L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7324							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCGGAACCATGAAACTTTGAT	0.373													35	90					0	0	0.002836	0	0
TTN	7273	broad.mit.edu	37	2	179589042	179589042	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179589042G>A	uc010zfg.1	-	69	17552	c.17328C>T	c.(17326-17328)TTC>TTT	p.F5776F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F2437F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6703							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGAACCTGGAAAGTGTATG	0.398													23	37					0	0	0.002299	0	0
TTN	7273	broad.mit.edu	37	2	179592435	179592435	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179592435A>G	uc010zfg.1	-	65	16362	c.16138T>C	c.(16138-16140)TTG>CTG	p.L5380L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L2041L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6307							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACCCTTCCAAGCCAATGAAA	0.393													86	225					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179595373	179595373	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179595373C>T	uc010zfg.1	-	58	14379	c.14155G>A	c.(14155-14157)GAA>AAA	p.E4719K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1380K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5646							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTACTTTTCACTAGCTGAT	0.398													39	66					0	0	0.005524	0	0
TTN	7273	broad.mit.edu	37	2	179604270	179604270	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179604270C>T	uc010zfh.1	-	46	13401	c.13177G>A	c.(13177-13179)GAA>AAA	p.E4393K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4326K|TTN_uc010zfj.1_Missense_Mutation_p.E4201K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTGTTTTTCGTCAGAGACA	0.428													33	64					0	0	0.003271	0	0
TTN	7273	broad.mit.edu	37	2	179605026	179605026	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179605026C>T	uc010zfh.1	-	46	12645	c.12421G>A	c.(12421-12423)GAA>AAA	p.E4141K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4074K|TTN_uc010zfj.1_Missense_Mutation_p.E3949K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTGCATTTTCCAGTGGATTT	0.433													27	54					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179606491	179606491	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179606491G>A	uc010zfh.1	-	46	11180	c.10956C>T	c.(10954-10956)ATC>ATT	p.I3652I	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.I3585I|TTN_uc010zfj.1_Silent_p.I3460I|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACACTTCTTTGATGAAAATTG	0.373													12	39					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179611580	179611580	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179611580G>A	uc002unb.2	-	46	15771	c.15547C>T	c.(15547-15549)CCA>TCA	p.P5183S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	8702							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATAAAAGATGGAGGCATTTCA	0.418													34	74					0	0	0.002836	0	0
TTN	7273	broad.mit.edu	37	2	179643629	179643629	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179643629G>A	uc010zfg.1	-	24	4404	c.4180C>T	c.(4180-4182)CCC>TCC	p.P1394S	TTN_uc010zfh.1_Missense_Mutation_p.P1348S|TTN_uc010zfi.1_Missense_Mutation_p.P1348S|TTN_uc010zfj.1_Missense_Mutation_p.P1348S|TTN_uc002unb.2_Missense_Mutation_p.P1394S|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1394							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTAGTGTGGGAATGTAAGTC	0.383													11	31					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179647757	179647757	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179647757G>A	uc010zfg.1	-	18	3100	c.2876C>T	c.(2875-2877)TCT>TTT	p.S959F	TTN_uc010zfh.1_Missense_Mutation_p.S913F|TTN_uc010zfi.1_Missense_Mutation_p.S913F|TTN_uc010zfj.1_Missense_Mutation_p.S913F|TTN_uc002unb.2_Missense_Mutation_p.S959F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	959							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAAGGTGACAGATTCACCTTC	0.403													19	44					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179664322	179664322	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:179664322G>A	uc002und.2	-	6	1031	c.806C>T	c.(805-807)CCG>CTG	p.P269L	TTN_uc010zfg.1_Missense_Mutation_p.P269L|TTN_uc010zfh.1_Missense_Mutation_p.P269L|TTN_uc010zfi.1_Missense_Mutation_p.P269L|TTN_uc010zfj.1_Missense_Mutation_p.P269L|TTN_uc002unb.2_Missense_Mutation_p.P269L			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	269							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCAATAGACGGTGGTGTTGG	0.582													26	58					0	0	0.004656	0	0
CWC22	57703	broad.mit.edu	37	2	180810045	180810045	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:180810045G>A	uc010frh.1	-	20	2838	c.2538C>T	c.(2536-2538)TTC>TTT	p.F846F	CWC22_uc002uno.2_Silent_p.F368F|CWC22_uc002unp.2_Silent_p.F846F	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	846						catalytic step 2 spliceosome	protein binding|RNA binding				0						CTTTTCTTCTGAAATTTTCAC	0.363													37	76					0	0	0.003755	0	0
ITGA4	3676	broad.mit.edu	37	2	182396465	182396465	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:182396465C>T	uc002unu.2	+	25	3509	c.2746C>T	c.(2746-2748)CAT>TAT	p.H916Y	ITGA4_uc002unv.2_Missense_Mutation_p.H161Y	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	916	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	AGCCAGTGTTCATATCCAACT	0.343													45	97					0	0	0.003610	0	0
PDE1A	5136	broad.mit.edu	37	2	183129116	183129116	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:183129116C>T	uc002uos.2	-	3	211	c.127G>A	c.(127-129)GAA>AAA	p.E43K	PDE1A_uc010zfp.1_5'UTR|PDE1A_uc002uoq.1_Missense_Mutation_p.E43K|PDE1A_uc010zfq.1_Missense_Mutation_p.E43K|PDE1A_uc002uor.2_Missense_Mutation_p.E27K|PDE1A_uc002uov.1_RNA	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	43	Calmodulin-binding (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TCACCTCTTTCCAGCTGCTTC	0.353													18	39					0	0	0.008871	0	0
PDE1A	5136	broad.mit.edu	37	2	183387070	183387070	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:183387070C>T	uc002uos.2	-	2	118	c.34G>A	c.(34-36)GAA>AAA	p.E12K	PDE1A_uc010zfp.1_5'UTR|PDE1A_uc002uoq.1_Missense_Mutation_p.E12K|PDE1A_uc010zfq.1_Missense_Mutation_p.E12K|PDE1A_uc002uov.1_RNA	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	12					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			GTGGTGTTTTCCAATTCTTCA	0.423													23	49					0	0	0.004656	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801846	185801846	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:185801846G>A	uc002uph.2	+	4	2317	c.1723G>A	c.(1723-1725)GAA>AAA	p.E575K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	575						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CACTCTAGATGAAAAATACAA	0.299													24	63					0	0	0.006320	0	0
FAM171B	165215	broad.mit.edu	37	2	187626618	187626618	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:187626618G>A	uc002ups.2	+	8	1661	c.1549G>A	c.(1549-1551)GGT>AGT	p.G517S	FAM171B_uc002upr.1_Missense_Mutation_p.G484S|FAM171B_uc002upt.2_5'UTR	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	517	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						GTATCTCACAGGTAATGAGGA	0.428													10	23					0	0	0.006214	0	0
CALCRL	10203	broad.mit.edu	37	2	188216651	188216651	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:188216651C>T	uc002upv.3	-	14	1714	c.1166G>A	c.(1165-1167)GGA>GAA	p.G389E	CALCRL_uc010frt.2_Missense_Mutation_p.G389E	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	389	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			TCATACCTCTCCATTAAAGAA	0.279													4	27					0	0	0.000602	0	0
COL3A1	1281	broad.mit.edu	37	2	189854874	189854874	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:189854874C>T	uc002uqj.1	+	9	860	c.743C>T	c.(742-744)CCA>CTA	p.P248L	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	248	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CCTGGACCTCCAGTGAGTCTT	0.368													20	55					0	0	0.008871	0	0
COL3A1	1281	broad.mit.edu	37	2	189867065	189867065	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:189867065C>T	uc002uqj.1	+	35	2550	c.2433C>T	c.(2431-2433)TTC>TTT	p.F811F		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	811	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CTGCTGGTTTCCCTGGTGCTC	0.438													18	40					0	0	0.010504	0	0
COL5A2	1290	broad.mit.edu	37	2	189901516	189901516	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:189901516A>G	uc002uqk.2	-	52	4214	c.3939T>C	c.(3937-3939)ATT>ATC	p.I1313I	COL5A2_uc010frx.2_Silent_p.I889I	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1313	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GGTTAGGATCAATCCAGTATT	0.338													10	16					0	0	0.001368	0	0
ANKAR	150709	broad.mit.edu	37	2	190593090	190593090	+	Missense_Mutation	SNP	G	A	A	rs139078107	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:190593090G>A	uc002uqw.1	+	13	2762	c.2762G>A	c.(2761-2763)GGA>GAA	p.G921E	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA|ANKAR_uc002uqy.1_Missense_Mutation_p.G88E	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	992						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			GAACAAATTGGATACAGCTTT	0.299													18	25					0	0	0.001882	0	0
SDPR	8436	broad.mit.edu	37	2	192701240	192701240	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:192701240C>T	uc002utb.2	-	2	1017	c.687G>A	c.(685-687)GAG>GAA	p.E229E		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	229	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TTTTTATTTTCTCTGCCCTAC	0.493													72	112					0	0	0.003610	0	0
SDPR	8436	broad.mit.edu	37	2	192711221	192711221	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:192711221T>G	uc002utb.2	-	1	761	c.431A>C	c.(430-432)AAC>ACC	p.N144T		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	144	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GGCGTGGTTGTTCTCCAGCCG	0.597													16	23					0	0	0.004007	0	0
SLC39A10	57181	broad.mit.edu	37	2	196581390	196581390	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:196581390C>T	uc002utg.3	+	7	1940	c.1726C>T	c.(1726-1728)CGA>TGA	p.R576*	SLC39A10_uc002uth.3_Nonsense_Mutation_p.R576*|SLC39A10_uc010zgp.1_Nonsense_Mutation_p.R126*	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	576					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			TTCTGAAGATCGACTTAATGA	0.328													15	42					0	0	0.006122	0	0
DNAH7	56171	broad.mit.edu	37	2	196664178	196664178	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:196664178C>T	uc002utj.3	-	55	10296	c.10195G>A	c.(10195-10197)GAA>AAA	p.E3399K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3399	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTATAAATTCCTGCAACATT	0.363													42	78					0	0	0.003610	0	0
DNAH7	56171	broad.mit.edu	37	2	196738347	196738347	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:196738347C>T	uc002utj.3	-	39	6459	c.6358G>A	c.(6358-6360)GAT>AAT	p.D2120N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2120	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATGGATTTATCACTAAACTCA	0.274													18	48					0	0	0.007413	0	0
DNAH7	56171	broad.mit.edu	37	2	196774764	196774764	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:196774764C>T	uc002utj.3	-	25	4192	c.4091G>A	c.(4090-4092)GGA>GAA	p.G1364E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1364	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AAAGAATTTTCCCAAAGCCAA	0.358													23	38					0	0	0.003330	0	0
DNAH7	56171	broad.mit.edu	37	2	196891640	196891640	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:196891640C>T	uc002utj.3	-	7	612	c.511G>A	c.(511-513)GGA>AGA	p.G171R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	171	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GTATCAATTCCATGGTGAATA	0.333													11	30					0	0	0.001855	0	0
CCDC150	284992	broad.mit.edu	37	2	197530331	197530331	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:197530331C>T	uc002utp.1	+	6	821	c.686C>T	c.(685-687)TCT>TTT	p.S229F	CCDC150_uc002uto.1_Missense_Mutation_p.S229F|CCDC150_uc010zgq.1_Intron|CCDC150_uc010zgr.1_Intron|CCDC150_uc010zgs.1_Intron	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	229	Potential.										0						CTTAGGGAATCTTTAGAGAAA	0.403													4	16					0	0	0.000602	0	0
C2orf66	401027	broad.mit.edu	37	2	197672301	197672301	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:197672301G>A	uc002utv.2	-	2	1109	c.220C>T	c.(220-222)CTT>TTT	p.L74F		NM_213608	NP_998773	Q6UXQ4	CB066_HUMAN	hypothetical protein LOC401027 precursor	74						extracellular region					0						AATGTTCCAAGATCAAGACCT	0.383													53	111					0	0	0.003610	0	0
PLCL1	5334	broad.mit.edu	37	2	198949057	198949057	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:198949057C>T	uc010fsp.2	+	2	1107	c.816C>T	c.(814-816)AAC>AAT	p.N272N	PLCL1_uc002uuv.3_Silent_p.N193N	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	272					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	AACAACTCAACCCTACTCTGA	0.418													27	66					0	0	0.006320	0	0
SATB2	23314	broad.mit.edu	37	2	200193547	200193547	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:200193547A>T	uc002uuy.1	-	8	2077	c.1260T>A	c.(1258-1260)AAT>AAA	p.N420K	SATB2_uc010fsq.1_Missense_Mutation_p.N302K|SATB2_uc002uuz.1_Missense_Mutation_p.N420K|SATB2_uc002uva.1_Missense_Mutation_p.N420K	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	420	CUT 1.					cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GATTGAGGAAATTCTGCATGG	0.522													26	34					0	0	0.004656	0	0
SGOL2	151246	broad.mit.edu	37	2	201438509	201438509	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:201438509T>G	uc002uvw.2	+	7	3553	c.3440T>G	c.(3439-3441)ATA>AGA	p.I1147R	SGOL2_uc010zhd.1_Missense_Mutation_p.I1147R|SGOL2_uc010zhe.1_Missense_Mutation_p.I1147R	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	1147					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						TCACCTAACATACAAGATTCT	0.343													19	47					0	0	0.007413	0	0
AOX1	316	broad.mit.edu	37	2	201462153	201462153	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:201462153C>T	uc002uvx.2	+	4	335	c.234C>T	c.(232-234)ATC>ATT	p.I78I		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	78	2Fe-2S ferredoxin-type.				inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	TGATTCCCATCTGTTCTCTGT	0.483													20	51					0	0	0.010504	0	0
NOP58	51602	broad.mit.edu	37	2	203157613	203157613	+	Silent	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:203157613T>A	uc002uzb.2	+	9	1044	c.894T>A	c.(892-894)CTT>CTA	p.L298L	SNORD11_uc002uzd.1_5'Flank	NM_015934	NP_057018	Q9Y2X3	NOP58_HUMAN	NOP58 ribonucleoprotein homolog	298	Nop.				cell growth|rRNA processing|snRNP protein import into nucleus	box C/D snoRNP complex|Cajal body|cytoplasm|pre-snoRNP complex	protein binding|snoRNA binding				0						GAGCACGGCTTATTGCTCATG	0.368													32	110					0	0	0.004289	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203807494	203807494	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:203807494C>T	uc002uzo.2	+	4	390	c.110C>T	c.(109-111)TCC>TTC	p.S37F	ALS2CR8_uc002uzn.2_Intron|ALS2CR8_uc002uzm.2_Missense_Mutation_p.S37F|ALS2CR8_uc010zhy.1_Missense_Mutation_p.S37F|ALS2CR8_uc010zhz.1_RNA|ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Intron|ALS2CR8_uc010zib.1_Intron|ALS2CR8_uc010zic.1_Intron|ALS2CR8_uc002uzp.2_Missense_Mutation_p.S37F	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	37										large_intestine(1)|ovary(1)	2						AGGGATTCTTCCTTTGGACAA	0.353													118	250					0	0	0.003610	0	0
PARD3B	117583	broad.mit.edu	37	2	206265765	206265765	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:206265765G>A	uc002var.1	+	19	2866	c.2659G>A	c.(2659-2661)GGA>AGA	p.G887R	PARD3B_uc002vao.1_Missense_Mutation_p.G887R|PARD3B_uc002vap.1_Missense_Mutation_p.G825R|PARD3B_uc002vaq.1_Missense_Mutation_p.G818R	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	887	Lys-rich.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		GGATAAGGGTGGAAAGGCTGA	0.428													7	17					0	0	0.003080	0	0
NRP2	8828	broad.mit.edu	37	2	206562290	206562290	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:206562290G>A	uc002vaw.2	+	2	887	c.96G>A	c.(94-96)TTG>TTA	p.L32L	NRP2_uc002vat.2_Silent_p.L32L|NRP2_uc002vau.2_Silent_p.L32L|NRP2_uc002vav.2_Silent_p.L32L|NRP2_uc002vax.2_Silent_p.L32L|NRP2_uc002vay.2_Silent_p.L32L|NRP2_uc010fud.2_Silent_p.L32L	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	32	Extracellular (Potential).|CUB 1.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GAGGTCGTTTGAATTCCAAAG	0.517													113	231					0	0	0.003610	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175171	207175171	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:207175171A>G	uc002vbp.2	+	5	6169	c.5919A>G	c.(5917-5919)TCA>TCG	p.S1973S		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1973							nucleic acid binding|zinc ion binding			ovary(3)	3						GTAAGTGTTCACGTTTACAGG	0.368													16	34					0	0	0.004007	0	0
CRYGD	1421	broad.mit.edu	37	2	208986442	208986442	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:208986442C>T	uc002vcn.3	-	3	596	c.480G>A	c.(478-480)ACG>ACA	p.T160T		NM_006891	NP_008822	P07320	CRGD_HUMAN	crystallin, gamma D	160	Beta/gamma crystallin 'Greek key' 4.				cellular response to reactive oxygen species|visual perception	soluble fraction	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		CTCTGGCATTCGTGGCCCCCC	0.498													12	39					0	0	0.001368	0	0
MAP2	4133	broad.mit.edu	37	2	210560546	210560546	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:210560546G>A	uc002vde.1	+	7	3900	c.3652G>A	c.(3652-3654)GCA>ACA	p.A1218T	MAP2_uc002vdc.1_Missense_Mutation_p.A1218T|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.A1214T	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1218					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	TTCTGATGTTGCAGAGCCATT	0.458													11	28					0	0	0.008291	0	0
ERBB4	2066	broad.mit.edu	37	2	212495276	212495276	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:212495276G>A	uc002veg.1	-	17	2088	c.1990C>T	c.(1990-1992)CTG>TTG	p.L664L	ERBB4_uc002veh.1_Silent_p.L664L|ERBB4_uc010zji.1_Silent_p.L654L|ERBB4_uc010zjj.1_Silent_p.L654L|ERBB4_uc010fut.1_Silent_p.L664L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	664	Potential.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ACAATGACCAGAATGAAGAGC	0.393										TSP Lung(8;0.080)			41	71					0	0	0.003214	0	0
ABCA12	26154	broad.mit.edu	37	2	215914410	215914410	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:215914410G>A	uc002vew.2	-	6	853	c.633C>T	c.(631-633)TGC>TGT	p.C211C	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	211					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TGTTAGAAAGGCAAAATTTGT	0.378													21	29					0	0	0.001882	0	0
CXCR2P1	3580	broad.mit.edu	37	2	218925401	218925401	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:218925401C>G	uc002vgx.2	-	1	613	c.320G>C	c.(319-321)GGA>GCA	p.G107A	RUFY4_uc002vgw.2_Intron	NR_002712				Homo sapiens interleukin 8 receptor, beta pseudogene, mRNA (cDNA clone IMAGE:5450999), with apparent retained intron.												0						CCCACATGGTCCAGTGCTTCT	0.552													15	48					0	0	0.004007	0	0
CXCR1	3577	broad.mit.edu	37	2	219029138	219029138	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:219029138G>A	uc002vhc.2	-	2	916	c.797C>T	c.(796-798)ACC>ATC	p.T266I		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	266	Extracellular (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						CCTCATGAGGGTGTCTGCCAG	0.592													28	68					0	0	0.005443	0	0
USP37	57695	broad.mit.edu	37	2	219341665	219341665	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:219341665G>A	uc002vie.2	-	19	2394	c.1941C>T	c.(1939-1941)TGC>TGT	p.C647C	USP37_uc010fvs.1_Silent_p.C647C|USP37_uc010zkf.1_Silent_p.C647C|USP37_uc002vif.2_Silent_p.C647C|USP37_uc002vig.2_Silent_p.C553C	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	647					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		CTGAATCAAGGCATAAAGCCA	0.393													15	36					0	0	0.004007	0	0
CCDC108	255101	broad.mit.edu	37	2	219871215	219871215	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:219871215G>T	uc002vjl.1	-	30	4775	c.4691C>A	c.(4690-4692)ACA>AAA	p.T1564K		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1564						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTCACAGGCTGTGCAGCATGT	0.438													53	107					4.88506e-25	5.47724e-25	0.003610	1	0
GLB1L	79411	broad.mit.edu	37	2	220108284	220108284	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:220108284C>T	uc002vkm.2	-	2	251	c.12G>A	c.(10-12)AAG>AAA	p.K4K	GLB1L_uc010zkx.1_Silent_p.K4K|GLB1L_uc002vkn.2_Silent_p.K4K|STK16_uc002vko.2_5'Flank|STK16_uc002vks.2_5'Flank|STK16_uc010zky.1_5'Flank|STK16_uc010fwf.2_5'Flank|STK16_uc002vkp.2_5'Flank|STK16_uc002vkr.2_5'Flank|STK16_uc002vkq.2_5'Flank	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	4					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGACAGCTTCTTGGGAGCCA	0.637													15	45					0	0	0.004990	0	0
TUBA4A	7277	broad.mit.edu	37	2	220115710	220115711	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:220115710_220115711GG>AA	uc002vkt.1	-	4	768_769	c.710_711CC>TT	c.(709-711)TCC>TTT	p.S237F	TUBA4A_uc010zkz.1_Missense_Mutation_p.S222F|TUBA4B_uc002vku.2_5'Flank|TUBA4B_uc002vkv.1_5'Flank	NM_006000	NP_005991	P68366	TBA4A_HUMAN	tubulin, alpha 4a	237					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|platelet activation|platelet degranulation|protein polymerization	cytosol|extracellular region|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)	3		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AAGCTGTGATGGAGGAGACAAT	0.564													20	43					0	0	0.004672	0	0
DNPEP	23549	broad.mit.edu	37	2	220239733	220239733	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:220239733G>A	uc010zlg.1	-	14	1357	c.1275C>T	c.(1273-1275)GTC>GTT	p.V425V	DNPEP_uc010zlf.1_RNA|DNPEP_uc002vle.2_Silent_p.V417V|DNPEP_uc002vlf.1_Silent_p.V403V|DNPEP_uc002vlh.2_Silent_p.V364V|DNPEP_uc002vli.1_Silent_p.V364V	NM_012100	NP_036232	Q9ULA0	DNPEP_HUMAN	aspartyl aminopeptidase	407					peptide metabolic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;1.09e-06)|all cancers(144;0.000179)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)	L-Glutamic Acid(DB00142)	TGTCATTCCGGACCATGAGAT	0.572													17	40					0	0	0.006122	0	0
SPEG	10290	broad.mit.edu	37	2	220354205	220354205	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:220354205C>T	uc010fwg.2	+	36	8465	c.8465C>T	c.(8464-8466)TCA>TTA	p.S2822L		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2822	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GTCAGCCCCTCATCTCCCCCC	0.677													7	37					0	0	0.001984	0	0
OBSL1	23363	broad.mit.edu	37	2	220430136	220430136	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:220430136G>A	uc010fwk.2	-	6	2292	c.2235C>T	c.(2233-2235)TTC>TTT	p.F745F	OBSL1_uc010zli.1_5'Flank|OBSL1_uc010fwl.1_Silent_p.F220F|OBSL1_uc002vmi.2_Silent_p.F745F|OBSL1_uc002vmj.2_Silent_p.F332F	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	745	Ig-like 5.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		AGGTTGCCGGGAAGTCCACCC	0.602											OREG0003987	type=REGULATORY REGION|Gene=BC061909|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	26	42					0	0	0.006320	0	0
EPHA4	2043	broad.mit.edu	37	2	222321436	222321436	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:222321436G>A	uc002vmq.2	-	7	1542	c.1500C>T	c.(1498-1500)ATC>ATT	p.I500I	EPHA4_uc002vmr.2_Silent_p.I500I|EPHA4_uc010zlm.1_Silent_p.I441I|EPHA4_uc010zln.1_Silent_p.I500I	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	500	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TCAGGCCTTTGATATCTGTGT	0.478													21	52					0	0	0.002299	0	0
AP1S3	130340	broad.mit.edu	37	2	224642566	224642566	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:224642566G>A	uc010fwx.1	-	2	176	c.24C>T	c.(22-24)TTC>TTT	p.F8F	AP1S3_uc002vnn.2_Silent_p.F8F|AP1S3_uc010fww.2_RNA|AP1S3_uc002vno.2_RNA	NM_001039569	NP_001034658	Q96PC3	AP1S3_HUMAN	adaptor-related protein complex 1, sigma 3	8					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane coat	protein transporter activity				0		Renal(207;0.0112)|Lung NSC(271;0.0186)|all_lung(227;0.0272)		Epithelial(121;7.6e-10)|all cancers(144;3.62e-07)|Lung(261;0.0086)|LUSC - Lung squamous cell carcinoma(224;0.00902)		CTTGTCGACTGAAGAGCAATA	0.408													12	49					0	0	0.002450	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446871	226446871	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:226446871C>T	uc002voe.2	+	4	913	c.738C>T	c.(736-738)ATC>ATT	p.I246I	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.I16I	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	246										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		CCGTGTACATCGAGATGGTGG	0.602													34	126					0	0	0.002445	0	0
COL4A4	1286	broad.mit.edu	37	2	227875162	227875162	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:227875162G>A	uc010zlt.1	-	45	5043	c.4389C>T	c.(4387-4389)CTC>CTT	p.L1463L		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1463					axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GGAAGCCACCGAGGTATCCAG	0.587													16	25					0	0	0.003163	0	0
COL4A4	1286	broad.mit.edu	37	2	227896882	227896882	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:227896882C>T	uc010zlt.1	-	39	4342	c.3688G>A	c.(3688-3690)GGT>AGT	p.G1230S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1230	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCTGGGGGACCTTTCTTTCCA	0.522													39	81					0	0	0.003610	0	0
COL4A4	1286	broad.mit.edu	37	2	227915856	227915857	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:227915856_227915857CC>TT	uc010zlt.1	-	33	3640_3641	c.2986_2987GG>AA	c.(2986-2988)GGG>AAG	p.G996K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	996	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCCTTGCATCCCGGGAGTTCCT	0.52													39	62					0	0	0.004672	0	0
COL4A4	1286	broad.mit.edu	37	2	227922198	227922198	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:227922198C>T	uc010zlt.1	-	29	3156	c.2502G>A	c.(2500-2502)GGG>GGA	p.G834G		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	834	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GCCCTGGTATCCCTGGAGCAC	0.468													7	16					0	0	0.003080	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882983	228882983	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:228882983G>A	uc002vpq.2	-	7	2634	c.2587C>T	c.(2587-2589)CCA>TCA	p.P863S	SPHKAP_uc002vpp.2_Missense_Mutation_p.P863S|SPHKAP_uc010zlx.1_Missense_Mutation_p.P863S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	863						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTGACCGTTGGGGACCTTTGT	0.493													47	70					0	0	0.003610	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883177	228883177	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:228883177C>T	uc002vpq.2	-	7	2440	c.2393G>A	c.(2392-2394)GGT>GAT	p.G798D	SPHKAP_uc002vpp.2_Missense_Mutation_p.G798D|SPHKAP_uc010zlx.1_Missense_Mutation_p.G798D	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	798						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCTCACTCCACCCTTGTCTTG	0.488													37	120					0	0	0.009718	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883927	228883927	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:228883927G>A	uc002vpq.2	-	7	1690	c.1643C>T	c.(1642-1644)TCC>TTC	p.S548F	SPHKAP_uc002vpp.2_Missense_Mutation_p.S548F|SPHKAP_uc010zlx.1_Missense_Mutation_p.S548F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	548						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTCATTGATGGAAGGTTCCTT	0.532													27	81					0	0	0.004656	0	0
SP110	3431	broad.mit.edu	37	2	231067394	231067394	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:231067394G>A	uc002vqh.3	-	9	1189	c.949C>T	c.(949-951)CAG>TAG	p.Q317*	SP110_uc002vqg.3_Nonsense_Mutation_p.Q317*|SP110_uc002vqi.3_Nonsense_Mutation_p.Q317*|SP110_uc010fxk.2_Nonsense_Mutation_p.Q315*|SP110_uc010fxj.2_Intron	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	317					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		TGAGGAACCTGATCCACCCTT	0.458													34	80					0	0	0.004878	0	0
SP140	11262	broad.mit.edu	37	2	231101941	231101941	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:231101941G>A	uc002vql.2	+	2	318	c.203G>A	c.(202-204)CGA>CAA	p.R68Q	SP140_uc010zma.1_RNA|SP140_uc002vqj.2_Missense_Mutation_p.R68Q|SP140_uc002vqk.2_Missense_Mutation_p.R68Q|SP140_uc002vqn.2_Missense_Mutation_p.R68Q|SP140_uc002vqm.2_Missense_Mutation_p.R68Q|SP140_uc010fxl.2_Missense_Mutation_p.R68Q	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	68	HSR.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		ATGGGCCTCCGAGACCGCTCC	0.443													33	60					0	0	0.006230	0	0
NMUR1	10316	broad.mit.edu	37	2	232392867	232392867	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:232392867C>T	uc002vry.3	-	2	975	c.865G>A	c.(865-867)GAT>AAT	p.D289N		NM_006056	NP_006047	Q9HB89	NMUR1_HUMAN	neuromedin U receptor 1	289	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|calcium ion transport|calcium-mediated signaling|chloride transport|smooth muscle contraction	integral to plasma membrane|membrane fraction	neuromedin U receptor activity			lung(3)|central_nervous_system(1)|pancreas(1)	5		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;8.37e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		CGGCCCCGATCGTGCTGCTGG	0.652													10	43					0	0	0.001368	0	0
GIGYF2	26058	broad.mit.edu	37	2	233677177	233677177	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:233677177C>T	uc002vti.3	+	20	2420	c.2083C>T	c.(2083-2085)CAG>TAG	p.Q695*	GIGYF2_uc010zmj.1_Nonsense_Mutation_p.Q695*|GIGYF2_uc002vtg.2_Nonsense_Mutation_p.Q689*|GIGYF2_uc002vtj.3_Nonsense_Mutation_p.Q716*|GIGYF2_uc002vtk.3_Nonsense_Mutation_p.Q695*|GIGYF2_uc002vth.3_Nonsense_Mutation_p.Q689*|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Nonsense_Mutation_p.Q526*|GIGYF2_uc002vtq.3_Nonsense_Mutation_p.Q28*	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	695	Gln-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		CTGGGAGCTTCAGCCAACAGC	0.378													10	31					0	0	0.001855	0	0
SPP2	6694	broad.mit.edu	37	2	234969093	234969093	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:234969093C>T	uc002vvk.1	+	4	499	c.414C>T	c.(412-414)TCC>TCT	p.S138S	SPP2_uc010fyl.1_Silent_p.S58S	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	138					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		GCTGGTCCTCCTCCACGTCTG	0.567													20	21					0	0	0.008871	0	0
COL6A3	1293	broad.mit.edu	37	2	238283530	238283530	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:238283530G>A	uc002vwl.2	-	8	3489	c.3204C>T	c.(3202-3204)GCC>GCT	p.A1068A	COL6A3_uc002vwo.2_Silent_p.A862A|COL6A3_uc010znj.1_Silent_p.A461A|COL6A3_uc002vwq.2_Silent_p.A862A|COL6A3_uc002vwr.2_Silent_p.A661A	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1068	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACTGCACCACGGCCACGCGGA	0.607													13	33					0	0	0.002450	0	0
COL6A3	1293	broad.mit.edu	37	2	238283548	238283548	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:238283548C>T	uc002vwl.2	-	8	3471	c.3186G>A	c.(3184-3186)CAG>CAA	p.Q1062Q	COL6A3_uc002vwo.2_Silent_p.Q856Q|COL6A3_uc010znj.1_Silent_p.Q455Q|COL6A3_uc002vwq.2_Silent_p.Q856Q|COL6A3_uc002vwr.2_Silent_p.Q655Q	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1062	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGACCCGGTCCTGGCCCACAT	0.587													15	29					0	0	0.004990	0	0
COL6A3	1293	broad.mit.edu	37	2	238303450	238303450	+	Silent	SNP	C	T	T	rs148970984	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:238303450C>T	uc002vwl.2	-	3	774	c.489G>A	c.(487-489)GCG>GCA	p.A163A	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Silent_p.A163A	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	163	VWFA 1.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACTTAAGTTCCGCTGAGGGCA	0.498													24	42					0	0	0.002299	0	0
COL6A3	1293	broad.mit.edu	37	2	238303473	238303473	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:238303473C>T	uc002vwl.2	-	3	751	c.466G>A	c.(466-468)GAT>AAT	p.D156N	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.D156N	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	156	VWFA 1.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GCAAGGCCATCCTTCGAGTGT	0.498													23	48					0	0	0.002780	0	0
C2orf54	79919	broad.mit.edu	37	2	241826495	241826495	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:241826495C>T	uc002wae.3	-	5	1495	c.1336G>A	c.(1336-1338)GAG>AAG	p.E446K	C2orf54_uc002wac.2_Missense_Mutation_p.E278K|C2orf54_uc002wad.2_Missense_Mutation_p.E297K	NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	446											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		GCTCAGCTCTCCTCGCCTCCC	0.572													14	37					0	0	0.003163	0	0
PASK	23178	broad.mit.edu	37	2	242072401	242072401	+	Nonsense_Mutation	SNP	G	A	A	rs140101325	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:242072401G>A	uc002wao.1	-	9	1443	c.1351C>T	c.(1351-1353)CGA>TGA	p.R451*	PASK_uc010zol.1_Nonsense_Mutation_p.R265*|PASK_uc010zom.1_Nonsense_Mutation_p.R416*|PASK_uc010fzl.1_Nonsense_Mutation_p.R451*|PASK_uc010zon.1_Nonsense_Mutation_p.R232*|PASK_uc002wap.2_5'UTR|PASK_uc002waq.2_Nonsense_Mutation_p.R451*	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	451					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity	p.R451L(1)		ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		ATCTCATCTCGGGGCACAACG	0.532													9	47					0	0	0.004482	0	0
TRIB3	57761	broad.mit.edu	37	20	372142	372142	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:372142C>T	uc002wdm.2	+	3	1009	c.503C>T	c.(502-504)ACC>ATC	p.T168I	TRIB3_uc002wdn.2_Missense_Mutation_p.T195I	NM_021158	NP_066981	Q96RU7	TRIB3_HUMAN	tribbles 3	168	Protein kinase.				apoptosis|cellular lipid metabolic process|insulin receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fatty acid biosynthetic process|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of protein binding|positive regulation of ubiquitin-protein ligase activity|regulation of glucose transport|regulation of MAP kinase activity|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	ATP binding|protein kinase activity|protein kinase binding|protein kinase inhibitor activity|transcription corepressor activity|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			central_nervous_system(2)	2		all_epithelial(17;0.165)|Lung NSC(37;0.191)|Breast(17;0.231)		Colorectal(46;0.101)|COAD - Colon adenocarcinoma(99;0.112)		CAGATGGCCACCGCCCTGGCG	0.622													5	22					0	0	0.001168	0	0
ANGPT4	51378	broad.mit.edu	37	20	896681	896681	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:896681A>G	uc002wei.2	-	1	280	c.177T>C	c.(175-177)CCT>CCC	p.P59P	ANGPT4_uc010zpn.1_Silent_p.P53P	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	59					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TGGAGACCTCAGGCCCCGGAG	0.627													3	103					0	0	0.004672	0	0
ANGPT4	51378	broad.mit.edu	37	20	896816	896816	+	Silent	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:896816A>C	uc002wei.2	-	1	145	c.42T>G	c.(40-42)CTT>CTG	p.L14L	ANGPT4_uc010zpn.1_Silent_p.L8L	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	14					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TGGCAACCACAAGGAGGAGGC	0.592													21	34					0	0	0.002299	0	0
SIRPB1	10326	broad.mit.edu	37	20	1559045	1559046	+	Missense_Mutation	DNP	CC	TT	TT	rs145977289	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:1559045_1559046CC>TT	uc010gai.2	-	2	470_471	c.371_372GG>AA	c.(370-372)CGG>CAA	p.R124Q	SIRPB1_uc002wfk.3_Missense_Mutation_p.R124Q	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	124	Extracellular (Potential).|Ig-like V-type.				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GGCTCCCTTTCCGGAACTTCAC	0.545													66	120					0	0	0.004672	0	0
TGM6	343641	broad.mit.edu	37	20	2376014	2376014	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:2376014C>T	uc002wfy.1	+	3	417	c.356C>T	c.(355-357)TCC>TTC	p.S119F	TGM6_uc010gal.1_Missense_Mutation_p.S119F	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	119					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	ATCAGGCTTTCCTCTCACCGC	0.562													26	96					0	0	0.009535	0	0
TGM6	343641	broad.mit.edu	37	20	2380241	2380241	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:2380241G>A	uc002wfy.1	+	6	768	c.707G>A	c.(706-708)GGA>GAA	p.G236E	TGM6_uc010gal.1_Missense_Mutation_p.G236E	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	236					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GTGGTGCAAGGACAGTGGCAG	0.642													21	65					0	0	0.006320	0	0
TMC2	117532	broad.mit.edu	37	20	2582822	2582822	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:2582822C>T	uc002wgf.1	+	11	1303	c.1288C>T	c.(1288-1290)CGT>TGT	p.R430C	TMC2_uc002wgg.1_Missense_Mutation_p.R414C|TMC2_uc010zpw.1_Missense_Mutation_p.R262C|TMC2_uc010zpx.1_Missense_Mutation_p.R261C	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	430	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						AAGATTTCTTCGTGTCCTGGC	0.388													7	33					0	0	0.001984	0	0
ProSAPiP1	9762	broad.mit.edu	37	20	3147713	3147713	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:3147713G>A	uc002wia.1	-	1	1495	c.97C>T	c.(97-99)CCC>TCC	p.P33S	ProSAPiP1_uc002wib.1_Missense_Mutation_p.P33S	NM_014731	NP_055546	O60299	PRIP1_HUMAN	ProSAPiP1 protein	33						cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				pancreas(1)	1						GCCAGGCGGGGGTCCGGGGGT	0.711													4	11					0	0	0.001168	0	0
HSPA12B	116835	broad.mit.edu	37	20	3719337	3719337	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:3719337G>A	uc002wjd.2	+	2	119	c.16G>A	c.(16-18)GAG>AAG	p.E6K	HSPA12B_uc010zqi.1_Missense_Mutation_p.E6K|HSPA12B_uc002wje.2_5'UTR|HSPA12B_uc010zqj.1_5'UTR	NM_052970	NP_443202	Q96MM6	HS12B_HUMAN	heat shock 70kD protein 12B	6							ATP binding				0						GGCTGTCCCGGAGATGGGCCT	0.552													33	65					0	0	0.003271	0	0
MAVS	57506	broad.mit.edu	37	20	3838380	3838380	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:3838380C>T	uc002wjw.3	+	3	385	c.216C>T	c.(214-216)TTC>TTT	p.F72F	MAVS_uc002wjv.2_Silent_p.F72F|MAVS_uc010zqn.1_Silent_p.F72F|MAVS_uc002wjx.3_Intron|MAVS_uc002wjy.3_5'UTR	NM_020746	NP_065797	Q7Z434	MAVS_HUMAN	virus-induced signaling adapter	72	Cytoplasmic (Probable).|Required for interaction with NLRX1.|CARD.				activation of innate immune response|cellular response to exogenous dsRNA|defense response to bacterium|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of chemokine (C-C motif) ligand 5 production|positive regulation of defense response to virus by host|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interleukin-8 production|positive regulation of IP-10 production|positive regulation of protein import into nucleus, translocation|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of type I interferon-mediated signaling pathway|response to virus	integral to membrane|mitochondrial outer membrane	CARD domain binding|protein kinase binding|signal transducer activity				0						TGGAGTACTTCATTGCGGCAC	0.627													33	99					0	0	0.006999	0	0
PROKR2	128674	broad.mit.edu	37	20	5282926	5282926	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:5282926G>A	uc010zqw.1	-	2	915	c.915C>T	c.(913-915)TTC>TTT	p.F305F	PROKR2_uc010zqx.1_Silent_p.F305F|PROKR2_uc010zqy.1_Silent_p.F305F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	305	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TTTCCTTCACGAACACAGTGG	0.537										HNSCC(71;0.22)			30	56					0	0	0.008361	0	0
PROKR2	128674	broad.mit.edu	37	20	5294791	5294791	+	Silent	SNP	G	A	A	rs139296723		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:5294791G>A	uc010zqw.1	-	1	225	c.225C>T	c.(223-225)ATC>ATT	p.I75I	PROKR2_uc010zqx.1_Silent_p.I75I|PROKR2_uc010zqy.1_Silent_p.I75I|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	75	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TGAGGGCAGCGATAAAGACAA	0.552										HNSCC(71;0.22)			25	62					0	0	0.003954	0	0
PLCB4	5332	broad.mit.edu	37	20	9404516	9404516	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:9404516G>A	uc002wnf.2	+	26	2541	c.2405G>A	c.(2404-2406)CGA>CAA	p.R802Q	PLCB4_uc010gbw.1_Missense_Mutation_p.R802Q|PLCB4_uc010gbx.2_Missense_Mutation_p.R814Q|PLCB4_uc002wne.2_Missense_Mutation_p.R802Q|PLCB4_uc002wnh.2_Missense_Mutation_p.R649Q	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	802					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ATTTCCCTTCGAAATGAGGGA	0.408													11	20					0	0	0.001368	0	0
PAK7	57144	broad.mit.edu	37	20	9546683	9546683	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:9546683C>T	uc002wnl.2	-	6	1884	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K	PAK7_uc002wnk.2_Missense_Mutation_p.E447K|PAK7_uc002wnj.2_Missense_Mutation_p.E447K|PAK7_uc010gby.1_Missense_Mutation_p.E447K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	447	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GCCAAGTATTCCCTGGGGTCT	0.582													29	70					0	0	0.007291	0	0
C20orf94	128710	broad.mit.edu	37	20	10541448	10541448	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:10541448C>T	uc010zre.1	+	4	398	c.218C>T	c.(217-219)TCC>TTC	p.S73F		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	73							protein binding				0						TTCACAAGATCCAATCCCTTG	0.383													13	27					0	0	0.001855	0	0
KIF16B	55614	broad.mit.edu	37	20	16387034	16387034	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:16387034G>A	uc002wpg.1	-	16	1838	c.1680C>T	c.(1678-1680)CTC>CTT	p.L560L	KIF16B_uc010gch.1_Silent_p.L560L|KIF16B_uc010gci.1_Silent_p.L560L|KIF16B_uc010gcj.1_Silent_p.L560L	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	560					cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TCTTCTCCCTGAGCTTGGCGG	0.473													58	175					0	0	0.003610	0	0
ZNF133	7692	broad.mit.edu	37	20	18295808	18295809	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:18295808_18295809CC>TT	uc010gcq.2	+	5	618_619	c.313_314CC>TT	c.(313-315)CCC>TTC	p.P105F	ZNF133_uc010zrv.1_Missense_Mutation_p.P108F|ZNF133_uc010zrw.1_Missense_Mutation_p.P42F|ZNF133_uc010gcr.2_Missense_Mutation_p.P105F|ZNF133_uc010zrx.1_Missense_Mutation_p.P10F|ZNF133_uc002wql.3_Missense_Mutation_p.P104F|ZNF133_uc010gcs.2_Missense_Mutation_p.P104F|ZNF133_uc010zry.1_Missense_Mutation_p.P10F|ZNF133_uc002wqm.2_Missense_Mutation_p.P105F	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	105						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						TAATCATCCCCCCTGGATCTTC	0.574													35	76					0	0	0.004672	0	0
SLC24A3	57419	broad.mit.edu	37	20	19566145	19566145	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:19566145A>G	uc002wrl.2	+	6	766	c.569A>G	c.(568-570)AAC>AGC	p.N190S		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	190	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						GCGGTATTCAACATCCTGTGC	0.547													78	138					0	0	0.003610	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20527462	20527462	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:20527462C>T	uc002wrz.2	-	24	3314	c.3171G>A	c.(3169-3171)ACG>ACA	p.T1057T	RALGAPA2_uc010gcx.2_Silent_p.T761T|RALGAPA2_uc010zsg.1_Silent_p.T505T	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1057					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GCCTTATGATCGTATTTAAGA	0.443													5	31					0	0	0.000602	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20569971	20569971	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:20569971C>T	uc002wrz.2	-	18	2523	c.2380G>A	c.(2380-2382)GAG>AAG	p.E794K	RALGAPA2_uc010gcx.2_Missense_Mutation_p.E498K|RALGAPA2_uc010zsg.1_Missense_Mutation_p.E242K	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	794					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GGCTGAGGCTCTGAAGAACTC	0.393													6	10					0	0	0.001168	0	0
NKX2-2	4821	broad.mit.edu	37	20	21492948	21492948	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:21492948C>T	uc002wsi.2	-	2	792	c.435G>A	c.(433-435)CGG>CGA	p.R145R		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	145	Homeobox.				brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						GCCGAAAGCGCCGCTCCAGCT	0.672													9	20					0	0	0.008291	0	0
CST8	10047	broad.mit.edu	37	20	23476513	23476513	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:23476513G>A	uc002wth.1	+	4	748	c.391G>A	c.(391-393)GAA>AAA	p.E131K		NM_005492	NP_005483	O60676	CST8_HUMAN	cystatin 8 precursor	131						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					CTGGAATGGTGAATTCACTGT	0.368													21	62					0	0	0.003954	0	0
C20orf191	149934	broad.mit.edu	37	20	26084146	26084146	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:26084146G>A	uc002wvj.3	-	2	325	c.270C>T	c.(268-270)ATC>ATT	p.I90I		NR_003678				SubName: Full=Putative uncharacterized protein ENSP00000323172;												0						TCAGTTTAAGGATCTGCTGTT	0.254													5	21					0	0	0.001168	0	0
BPIL1	80341	broad.mit.edu	37	20	31607401	31607401	+	Missense_Mutation	SNP	C	T	T	rs150536106		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:31607401C>T	uc002wyj.2	+	11	1119	c.925C>T	c.(925-927)CCC>TCC	p.P309S		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	309						extracellular region	lipid binding	p.P309S(1)		skin(2)|large_intestine(1)|ovary(1)	4						CCGCCAGTTTCCCGAGCCCAT	0.667													6	14					0	0	0.004482	0	0
BPIL3	128859	broad.mit.edu	37	20	31624250	31624250	+	Splice_Site	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:31624250G>A	uc010zuc.1	+	7	578	c.578_splice	c.e7-1	p.D193_splice	BPIL3_uc010zud.1_Splice_Site_p.D132_splice	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing							extracellular region	lipid binding			ovary(1)|pancreas(1)	2						TTTTCACACAGACCCCATGCC	0.512													36	115					0	0	0.007835	0	0
ZNF341	84905	broad.mit.edu	37	20	32349678	32349678	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:32349678G>T	uc002wzy.2	+	8	1059	c.1039G>T	c.(1039-1041)GAG>TAG	p.E347*	ZNF341_uc002wzx.2_Nonsense_Mutation_p.E340*|ZNF341_uc010geq.2_Nonsense_Mutation_p.E257*|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	347					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CCACACCGGTGAGAAGCCCTT	0.577													34	79					2.19358e-23	2.45667e-23	0.005524	1	0
NCOA6	23054	broad.mit.edu	37	20	33324560	33324560	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:33324560G>A	uc002xav.2	-	13	8467	c.5896C>T	c.(5896-5898)CCG>TCG	p.P1966S	NCOA6_uc002xaw.2_Missense_Mutation_p.P1966S	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1966	EP300/CRSP3-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						TTCTGCGACGGGGCTAAGGCA	0.408													8	28					0	0	0.003080	0	0
CEP250	11190	broad.mit.edu	37	20	34091040	34091040	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:34091040G>A	uc002xcm.2	+	31	5514	c.4843G>A	c.(4843-4845)GAG>AAG	p.E1615K	CEP250_uc010zve.1_Missense_Mutation_p.E983K	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1615	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CCATGACCTGGAGAGCCACAG	0.577													31	30					0	0	0.009535	0	0
NNAT	4826	broad.mit.edu	37	20	36151112	36151112	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:36151112G>A	uc002xhd.2	+	3	324	c.197G>A	c.(196-198)CGG>CAG	p.R66Q	BLCAP_uc002xha.2_5'Flank|BLCAP_uc002xhb.2_Intron|BLCAP_uc002xhc.2_Intron|NNAT_uc002xhe.2_Missense_Mutation_p.R39Q	NM_005386	NP_005377	Q16517	NNAT_HUMAN	neuronatin isoform alpha	66					brain development|protein lipoylation|transport						0		Myeloproliferative disorder(115;0.00878)				ACGGTGTCGCGGACCGGGCGG	0.652													11	18					0	0	0.001855	0	0
RALGAPB	57148	broad.mit.edu	37	20	37168506	37168506	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:37168506C>T	uc002xiw.2	+	17	2724	c.2467C>T	c.(2467-2469)CCT>TCT	p.P823S	RALGAPB_uc002xix.2_Missense_Mutation_p.P819S|RALGAPB_uc002xiy.1_Missense_Mutation_p.P823S|RALGAPB_uc002xiz.2_Missense_Mutation_p.P601S|RALGAPB_uc002xja.1_Missense_Mutation_p.P550S	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	823					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						TCGGCCAGCTCCTTTACACTC	0.488													21	73					0	0	0.002780	0	0
RALGAPB	57148	broad.mit.edu	37	20	37199425	37199425	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:37199425C>T	uc002xiw.2	+	28	4334	c.4077C>T	c.(4075-4077)CTC>CTT	p.L1359L	RALGAPB_uc002xix.2_Silent_p.L1356L|RALGAPB_uc002xiy.1_Intron|RALGAPB_uc002xiz.2_Silent_p.L1138L	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	1359	Rap-GAP.				activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						ACTTTCCCCTCTCAGAGCTGA	0.373													17	41					0	0	0.007413	0	0
PLCG1	5335	broad.mit.edu	37	20	39794189	39794189	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:39794189G>A	uc002xjp.1	+	15	1730	c.1609G>A	c.(1609-1611)GAG>AAG	p.E537K	PLCG1_uc002xjo.1_Missense_Mutation_p.E537K|PLCG1_uc010zwe.1_Missense_Mutation_p.E163K|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	537					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				GGAGCCCAAGGAGGTGAGGAA	0.587													19	17					0	0	0.006122	0	0
SGK2	10110	broad.mit.edu	37	20	42198152	42198152	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:42198152G>A	uc002xkv.2	+	5	755	c.536G>A	c.(535-537)GGA>GAA	p.G179E	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Missense_Mutation_p.G119E|SGK2_uc010ggm.2_Missense_Mutation_p.G119E|SGK2_uc002xks.2_Missense_Mutation_p.G118E|SGK2_uc002xku.2_Missense_Mutation_p.G119E|SGK2_uc002xkq.1_Missense_Mutation_p.G119E	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	179	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			GTCAACGGGGGAGAGGTGGGT	0.612													46	53					0	0	0.003610	0	0
WFDC6	140870	broad.mit.edu	37	20	44167995	44167995	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:44167995C>T	uc002xos.1	-	1	140	c.52G>A	c.(52-54)GAC>AAC	p.D18N	SPINLW1_uc010zxc.1_Intron	NM_080827	NP_543017	Q9BQY6	WFDC6_HUMAN	WAP four-disulfide core domain 6 precursor	18						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TCCTGGATGTCCCCCAAAAGG	0.517													48	77					0	0	0.003610	0	0
SLC13A3	64849	broad.mit.edu	37	20	45194871	45194871	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:45194871C>T	uc002xsf.1	-	11	1529	c.1491G>A	c.(1489-1491)GAG>GAA	p.E497E	SLC13A3_uc010ghn.1_Silent_p.E466E|SLC13A3_uc010zxw.1_Silent_p.E447E|SLC13A3_uc002xsg.1_Silent_p.E450E|SLC13A3_uc010gho.1_Silent_p.E415E|SLC13A3_uc010zxx.1_Silent_p.E399E|SLC13A3_uc002xse.1_5'Flank|SLC13A3_uc010ghm.1_Silent_p.E84E|SLC13A3_uc010zxv.1_Silent_p.E82E	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	497	Extracellular (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	CCCTCACCAGCTCTGCCAGGA	0.607													91	106					0	0	0.003610	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353966	45353966	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:45353966C>T	uc002xsl.2	+	2	388	c.291C>T	c.(289-291)TCC>TCT	p.S97S		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	97	Helical; Name=3; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TGGCTGGTTCCCTGGCCTGGC	0.632													44	31					0	0	0.003610	0	0
EYA2	2139	broad.mit.edu	37	20	45717957	45717957	+	Silent	SNP	G	A	A	rs143429707	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:45717957G>A	uc002xsm.2	+	8	1115	c.741G>A	c.(739-741)GGG>GGA	p.G247G	EYA2_uc010ghp.2_Silent_p.G247G|EYA2_uc002xsn.2_Silent_p.G252G|EYA2_uc002xso.2_Silent_p.G247G|EYA2_uc002xsp.2_Silent_p.G247G|EYA2_uc002xsq.2_Silent_p.G247G	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	247					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				CCTCCGACGGGAAGCTCCGAG	0.577													64	66					0	0	0.003610	0	0
NCOA3	8202	broad.mit.edu	37	20	46281213	46281213	+	Missense_Mutation	SNP	C	T	T	rs148634537		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:46281213C>T	uc002xtk.2	+	21	4215	c.4010C>T	c.(4009-4011)TCG>TTG	p.S1337L	NCOA3_uc002xtl.2_Missense_Mutation_p.S1333L|NCOA3_uc002xtm.2_Missense_Mutation_p.S1332L|NCOA3_uc002xtn.2_Missense_Mutation_p.S1336L|NCOA3_uc010zyc.1_Missense_Mutation_p.S1132L	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1337					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						GCAATGATGTCGTCAAGAATG	0.463													50	44					0	0	0.003610	0	0
ATP9A	10079	broad.mit.edu	37	20	50286538	50286538	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:50286538G>A	uc002xwg.1	-	13	1291	c.1291C>T	c.(1291-1293)CAG>TAG	p.Q431*	ATP9A_uc010gih.1_Nonsense_Mutation_p.Q295*|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	431	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GGCTTTACCTGGGTGTAAATG	0.323													43	78					0	0	0.003610	0	0
ZFP64	55734	broad.mit.edu	37	20	50701142	50701142	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:50701142G>A	uc002xwk.2	-	9	2241	c.1892C>T	c.(1891-1893)TCC>TTC	p.S631F	ZFP64_uc002xwj.2_Missense_Mutation_p.S412F	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CTGCCCCACGGAGACCAGGGT	0.597													32	41					0	0	0.004878	0	0
PCK1	5105	broad.mit.edu	37	20	56138725	56138725	+	Silent	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:56138725C>G	uc002xyn.3	+	6	1066	c.903C>G	c.(901-903)CCC>CCG	p.P301P	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	301					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CCAGCCTCCCCGGGTGGAAGG	0.557													56	68					0	0	0.003610	0	0
PCK1	5105	broad.mit.edu	37	20	56140833	56140833	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:56140833C>T	uc002xyn.3	+	10	2005	c.1842C>T	c.(1840-1842)GCC>GCT	p.A614A	PCK1_uc010zzm.1_Silent_p.A297A	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	614					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			AGATCCTTGCCTTGAAGCAAA	0.478													12	39					0	0	0.001368	0	0
ZBP1	81030	broad.mit.edu	37	20	56191419	56191419	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:56191419T>C	uc002xyo.2	-	2	421	c.140A>G	c.(139-141)CAA>CGA	p.Q47R	ZBP1_uc010gjm.2_Missense_Mutation_p.Q47R|ZBP1_uc002xyp.2_Intron|ZBP1_uc010zzn.1_Missense_Mutation_p.Q47R	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	47	DRADA 1.					cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			GTAGAGGACTTGGTTGAGCTC	0.567													65	95					0	0	0.003610	0	0
PMEPA1	56937	broad.mit.edu	37	20	56227540	56227540	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:56227540C>T	uc002xyq.2	-	4	826	c.433G>A	c.(433-435)GAC>AAC	p.D145N	PMEPA1_uc002xyr.2_Missense_Mutation_p.D95N|PMEPA1_uc002xys.2_Missense_Mutation_p.D110N|PMEPA1_uc002xyt.2_Missense_Mutation_p.D95N	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	145	Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						GGTGGCAGGTCGATCTCGTGC	0.711													14	22					0	0	0.004990	0	0
TUBB1	81027	broad.mit.edu	37	20	57598904	57598904	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:57598904G>A	uc002yak.2	+	4	691	c.422G>A	c.(421-423)GGG>GAG	p.G141E		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	141	GTP (Potential).				'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	TCCCTGGGCGGGGGCACAGGC	0.592													32	103					0	0	0.004289	0	0
ZNF831	128611	broad.mit.edu	37	20	57767358	57767358	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:57767358G>A	uc002yan.2	+	1	1284	c.1284G>A	c.(1282-1284)CGG>CGA	p.R428R		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	428						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ACAACGTGCGGCCCCGGAAGA	0.657													7	25					0	0	0.003080	0	0
MIR646	693231	broad.mit.edu	37	20	58883623	58883623	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:58883623G>A	hsa-mir-646|MI0003661	+			c.92G>A			uc002ybl.2_Intron|uc010gjw.1_Intron																	0						caggctcagtggcctatcttt	0													28	41					0	0	0.008361	0	0
CDH4	1002	broad.mit.edu	37	20	60348170	60348170	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:60348170G>A	uc002ybn.1	+	4	522	c.508G>A	c.(508-510)GAC>AAC	p.D170N	CDH4_uc002ybp.1_Missense_Mutation_p.D96N	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	170	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GCGCAAACGGGACTGGGTCAT	0.701													13	20					0	0	0.001855	0	0
LSM14B	149986	broad.mit.edu	37	20	60705335	60705335	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:60705335C>T	uc010gjy.1	+	5	862	c.656C>T	c.(655-657)CCT>CTT	p.P219L	LSM14B_uc010gjx.1_Missense_Mutation_p.P245L|LSM14B_uc002ybv.2_Intron|LSM14B_uc010gjz.1_Missense_Mutation_p.P175L|LSM14B_uc010zzz.1_Missense_Mutation_p.P139L	NM_144703	NP_653304	Q9BX40	LS14B_HUMAN	LSM14 homolog B	219					multicellular organismal development|regulation of translation	ribonucleoprotein complex					0	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.28e-07)			AACAGAAGACCTCAGAGGAGG	0.547													9	6					0	0	0.006214	0	0
GATA5	140628	broad.mit.edu	37	20	61048533	61048533	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:61048533G>A	uc002ycx.1	-	3	687	c.625C>T	c.(625-627)CTG>TTG	p.L209L		NM_080473	NP_536721	Q9BWX5	GATA5_HUMAN	GATA binding protein 5	209	GATA-type 1.				blood coagulation|intestinal epithelial cell differentiation|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding				0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;3.08e-06)			GCATTGCACAGGTAGTGGCCG	0.662													5	21					0	0	0.000602	0	0
NTSR1	4923	broad.mit.edu	37	20	61340633	61340633	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:61340633G>A	uc002ydf.2	+	1	445	c.74G>A	c.(73-75)GGA>GAA	p.G25E		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	25	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			GCGCAGGCCGGACTGGAGGAG	0.751													3	6					0	0	0.004672	0	0
COL20A1	57642	broad.mit.edu	37	20	61943346	61943346	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:61943346C>T	uc011aau.1	+	14	1842	c.1742C>T	c.(1741-1743)CCG>CTG	p.P581L	COL20A1_uc011aav.1_Missense_Mutation_p.P402L	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	581	Fibronectin type-III 4.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GAGGGTGCCCCGAGGCCTGTG	0.682													6	28					0	0	0.001984	0	0
SLC2A4RG	56731	broad.mit.edu	37	20	62373328	62373328	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:62373328C>T	uc002ygq.2	+	4	553	c.498C>T	c.(496-498)TCC>TCT	p.S166S	SLC2A4RG_uc002ygr.2_Silent_p.S61S|SLC2A4RG_uc011abj.1_Silent_p.S61S|SLC2A4RG_uc002ygs.2_Intron|SLC2A4RG_uc002ygt.2_5'UTR	NM_020062	NP_064446	Q9NR83	S2A4R_HUMAN	SLC2A4 regulator	166						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					GTGACCAGTCCTCTCCGTCCA	0.677													14	29					0	0	0.004007	0	0
PRPF6	24148	broad.mit.edu	37	20	62658990	62658990	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:62658990T>G	uc002yho.2	+	17	2408	c.2240T>G	c.(2239-2241)CTT>CGT	p.L747R	PRPF6_uc002yhp.2_Missense_Mutation_p.L707R	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	747	HAT 8.				assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					CCCCTGTGGCTTTTGCTCTCT	0.542													18	183					0	0	0.007413	0	0
TPTE	7179	broad.mit.edu	37	21	10908892	10908892	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:10908892G>A	uc002yip.1	-	23	1821	c.1453C>T	c.(1453-1455)CTT>TTT	p.L485F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.L467F|TPTE_uc002yir.1_Missense_Mutation_p.L447F|TPTE_uc010gkv.1_Missense_Mutation_p.L347F	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	485	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TATGTAGGAAGATTCTAAAAA	0.269													4	40					0	0	0.000602	0	0
TPTE	7179	broad.mit.edu	37	21	10910328	10910328	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:10910328C>T	uc002yip.1	-	22	1796	c.1428G>A	c.(1426-1428)GTG>GTA	p.V476V	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.V458V|TPTE_uc002yir.1_Silent_p.V438V|TPTE_uc010gkv.1_Silent_p.V338V	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	476	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ACTGCACTTTCACATCATCAT	0.343													7	96					0	0	0.001368	0	0
TPTE	7179	broad.mit.edu	37	21	10969106	10969106	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:10969106C>T	uc002yip.1	-	7	510	c.142G>A	c.(142-144)GGA>AGA	p.G48R	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Intron|TPTE_uc002yir.1_Intron|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	48					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGGGCTGCTCCTTTAAATTCA	0.318													22	115					0	0	0.002780	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19698860	19698860	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:19698860C>T	uc002ykw.2	-	16	1841	c.1810G>A	c.(1810-1812)GAT>AAT	p.D604N		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	604	Extracellular (Potential).|CUB 2.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GAGAACACATCCTTTACTGGG	0.443													22	57					0	0	0.003330	0	0
TIAM1	7074	broad.mit.edu	37	21	32519304	32519304	+	Silent	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:32519304C>A	uc002yow.1	-	21	3856	c.3384G>T	c.(3382-3384)CTG>CTT	p.L1128L	TIAM1_uc011adk.1_Silent_p.L1128L|TIAM1_uc011adl.1_Silent_p.L1068L	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1128	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ATGATCCCCCCAGAGAGAACA	0.502													12	35					0.00010058	0.000111409	0.001368	1	0
TIAM1	7074	broad.mit.edu	37	21	32567601	32567601	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:32567601G>A	uc002yow.1	-	14	2986	c.2514C>T	c.(2512-2514)ATC>ATT	p.I838I	TIAM1_uc011adk.1_Silent_p.I838I|TIAM1_uc011adl.1_Silent_p.I778I	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	838					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						CTTTTGGACAGATTTCAATTT	0.303													12	31					0	0	0.001855	0	0
MRAP	56246	broad.mit.edu	37	21	33684140	33684140	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:33684140G>A	uc002ypj.2	+	5	539	c.352G>A	c.(352-354)GGC>AGC	p.G118S	MRAP_uc002ypk.2_Intron|URB1_uc002ypn.2_3'UTR|MRAP_uc011ado.1_Missense_Mutation_p.G59S|MRAP_uc002ypl.2_Missense_Mutation_p.G118S	NM_178817	NP_848932	Q8TCY5	MRAP_HUMAN	melanocortin 2 receptor accessory protein	118	Extracellular (Potential).				positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|integral to membrane|perinuclear region of cytoplasm|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding				0						GAGCAGAACTGGCCCTGACCA	0.647													10	23					0	0	0.008291	0	0
SON	6651	broad.mit.edu	37	21	34927501	34927501	+	Silent	SNP	T	C	C	rs139304331		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:34927501T>C	uc002yse.1	+	3	6013	c.5964T>C	c.(5962-5964)CCT>CCC	p.P1988P	SON_uc002ysb.1_Silent_p.P1988P|SON_uc002ysc.2_Silent_p.P1988P|SON_uc002ysd.2_Silent_p.P979P|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Silent_p.P979P	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	1988	2-7.|2 X 19 AA repeats of P-S-R-R-R-R-S-R-S-V- V-R-R-R-S-F-S-I-S.|7 X 7 AA repeats of P-S-R-R-S-R-[TS].				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						gccgcacccctagccgtcgga	0.154													20	34					0	0	0.002299	0	0
ITSN1	6453	broad.mit.edu	37	21	35122567	35122567	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:35122567C>T	uc002yta.1	+	6	734	c.466C>T	c.(466-468)CCC>TCC	p.P156S	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Missense_Mutation_p.P156S|ITSN1_uc010gmg.2_Missense_Mutation_p.P119S|ITSN1_uc010gmh.2_RNA|ITSN1_uc002ysw.2_Missense_Mutation_p.P156S|ITSN1_uc010gmi.2_Missense_Mutation_p.P119S|ITSN1_uc010gmj.2_Missense_Mutation_p.P40S|ITSN1_uc002ysy.2_Missense_Mutation_p.P156S|ITSN1_uc002ysx.2_Missense_Mutation_p.P119S|ITSN1_uc002ytb.1_Missense_Mutation_p.P156S|ITSN1_uc002ytc.1_Missense_Mutation_p.P156S|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Missense_Mutation_p.P119S|ITSN1_uc010gml.2_RNA|ITSN1_uc002ytj.2_Missense_Mutation_p.P156S|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Missense_Mutation_p.P90S	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	156					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						AGCAGCTGTGCCCCCCCTGGC	0.522													26	73					0	0	0.008361	0	0
CHAF1B	8208	broad.mit.edu	37	21	37785199	37785199	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:37785199T>G	uc002yvj.2	+	12	1217	c.1079T>G	c.(1078-1080)TTC>TGC	p.F360C		NM_005441	NP_005432	Q13112	CAF1B_HUMAN	chromatin assembly factor 1 subunit B	360	WD 7.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|cytoplasm	chromatin binding|histone binding|unfolded protein binding			ovary(1)|skin(1)	2						GATGGTGCCTTCCTGGCCATT	0.443													25	68					0	0	0.006320	0	0
SIM2	6493	broad.mit.edu	37	21	38095401	38095401	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:38095401G>A	uc002yvr.2	+	5	569	c.513G>A	c.(511-513)AGG>AGA	p.R171R	SIM2_uc002yvq.2_Silent_p.R171R	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	171					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						TGGCGAAAAGGAACGCGGGCC	0.542													38	90					0	0	0.007835	0	0
ERG	2078	broad.mit.edu	37	21	39774508	39774508	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:39774508G>A	uc010gnw.2	-	7	960	c.665C>T	c.(664-666)TCT>TTT	p.S222F	ERG_uc002yxa.2_Missense_Mutation_p.S215F|ERG_uc011aek.1_Missense_Mutation_p.S123F|ERG_uc010gnv.2_Missense_Mutation_p.S123F|ERG_uc010gnx.2_Missense_Mutation_p.S222F|ERG_uc011ael.1_Missense_Mutation_p.S222F|ERG_uc002yxb.2_Missense_Mutation_p.S222F|ERG_uc011aem.1_Intron|ERG_uc002yxc.3_Missense_Mutation_p.S222F|ERG_uc010gny.1_Intron	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	222					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				TAACCGTGGAGAGTTTTGTAA	0.438													14	38					0	0	0.004990	0	0
BRWD1	54014	broad.mit.edu	37	21	40574327	40574327	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:40574327A>G	uc002yxk.1	-	38	4648	c.4509T>C	c.(4507-4509)GGT>GGC	p.G1503G	BRWD1_uc010goc.1_Silent_p.G146G|BRWD1_uc002yxl.2_Silent_p.G1503G|BRWD1_uc010god.1_Silent_p.G421G	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1503					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				CTGAAGAGTCACCAGAAGTAA	0.408													14	44					0	0	0.004990	0	0
DSCAM	1826	broad.mit.edu	37	21	41414561	41414561	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:41414561G>A	uc002yyq.1	-	32	5875	c.5423C>T	c.(5422-5424)TCC>TTC	p.S1808F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1808	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GTAAGTGGAGGAGGCACTTTC	0.522													19	37					0	0	0.008871	0	0
RRP1	8568	broad.mit.edu	37	21	45217384	45217384	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:45217384C>T	uc002zds.2	+	6	597	c.504C>T	c.(502-504)CAC>CAT	p.H168H	RRP1_uc011aez.1_Silent_p.H168H|RRP1_uc010gpk.1_Silent_p.H18H|RRP1_uc010gpl.1_Silent_p.H66H|RRP1_uc010gpm.1_Silent_p.H35H	NM_003683	NP_003674	P56182	RRP1_HUMAN	ribosomal RNA processing 1 homolog	168					rRNA processing	nucleolus|preribosome, small subunit precursor					0				COAD - Colon adenocarcinoma(84;0.00753)|Colorectal(79;0.0157)|STAD - Stomach adenocarcinoma(101;0.171)		TGAAGAGCCACTTCATCGAGA	0.602													16	30					0	0	0.004007	0	0
PWP2	5822	broad.mit.edu	37	21	45540342	45540342	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:45540342C>T	uc002zeb.2	+	11	1392	c.1302C>T	c.(1300-1302)TCC>TCT	p.S434S		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	434	WD 9.					cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		TGACCTCATCCATGGACGGGA	0.597													46	90					0	0	0.003610	0	0
PFKL	5211	broad.mit.edu	37	21	45741700	45741700	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:45741700C>T	uc002zel.2	+	13	1339	c.1280C>T	c.(1279-1281)TCC>TTC	p.S427F	PFKL_uc002zek.2_Missense_Mutation_p.S474F|PFKL_uc002zem.2_Missense_Mutation_p.S14F|PFKL_uc002zen.2_Missense_Mutation_p.S14F	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	427					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		ACCGGCATCTCCCATGGACAC	0.627													22	68					0	0	0.002299	0	0
TRPM2	7226	broad.mit.edu	37	21	45795894	45795894	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:45795894G>A	uc002zet.1	+	7	1163	c.950G>A	c.(949-951)GGA>GAA	p.G317E	TRPM2_uc002zeu.1_Missense_Mutation_p.G317E|TRPM2_uc002zew.1_Missense_Mutation_p.G317E|TRPM2_uc010gpt.1_Missense_Mutation_p.G317E|TRPM2_uc002zex.1_Missense_Mutation_p.G103E	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	317	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAGGAAAGAGGAGGTAGGGGA	0.587													20	35					0	0	0.010504	0	0
TRPM2	7226	broad.mit.edu	37	21	45821766	45821766	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:45821766G>A	uc002zet.1	+	17	2737	c.2524G>A	c.(2524-2526)GAG>AAG	p.E842K	TRPM2_uc002zeu.1_Missense_Mutation_p.E842K|TRPM2_uc002zew.1_Missense_Mutation_p.E842K|TRPM2_uc010gpt.1_Missense_Mutation_p.E842K|TRPM2_uc002zex.1_Missense_Mutation_p.E628K|TRPM2_uc002zey.1_Missense_Mutation_p.E355K	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	842	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTTGGTGTGCGAGGAGATGCG	0.627													70	113					0	0	0.003610	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999659	45999659	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:45999659C>G	uc002zfl.1	-	1	823	c.797G>C	c.(796-798)TGC>TCC	p.C266S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	266						keratin filament					0						CAGGCGGGAGCACGCGGGGCG	0.687													14	29					0	0	0.004007	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000140	46000140	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:46000140C>T	uc002zfl.1	-	1	342	c.316G>A	c.(316-318)GAT>AAT	p.D106N	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	106	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						GAAGAGGAATCCTTAGAgcag	0.308													29	63					0	0	0.005443	0	0
ADARB1	104	broad.mit.edu	37	21	46596307	46596307	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:46596307C>T	uc002zgy.2	+	4	1126	c.691C>T	c.(691-693)CCG>TCG	p.P231S	ADARB1_uc002zgr.2_Missense_Mutation_p.P231S|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.P231S|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.P231S|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA|ADARB1_uc011afo.1_Missense_Mutation_p.P280S	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	231	DRBM 2.				adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		ATTCCCACCCCCGAGTGGGAA	0.597													23	45					0	0	0.003330	0	0
PCNT	5116	broad.mit.edu	37	21	47819663	47819663	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr21:47819663C>T	uc002zji.3	+	25	4851	c.4744C>T	c.(4744-4746)CAG>TAG	p.Q1582*	PCNT_uc002zjj.2_Nonsense_Mutation_p.Q1464*	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1582	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GGCCCAGCTCCAGGAAGAAGT	0.473													30	59					0	0	0.008361	0	0
XKR3	150165	broad.mit.edu	37	22	17265203	17265203	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:17265203T>C	uc002zlv.2	-	4	784	c.686A>G	c.(685-687)AAG>AGG	p.K229R	XKR3_uc011agf.1_Missense_Mutation_p.K229R	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	229						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CGGCGGTAGCTTAATGGTAGT	0.428													8	27					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	22	18844999	18844999	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:18844999C>T	uc002zoe.2	+	4		c.2253C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CTTGAAGATCCTGAGTGAGTC	0.577													4	30					0	0	0.009096	0	0
TRMT2A	27037	broad.mit.edu	37	22	20102123	20102123	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:20102123G>C	uc002zrk.1	-	8	1422	c.1207C>G	c.(1207-1209)CGG>GGG	p.R403G	TRMT2A_uc002zrl.1_Missense_Mutation_p.R403G|TRMT2A_uc002zrm.1_Missense_Mutation_p.R225G|TRMT2A_uc002zrn.1_Missense_Mutation_p.R403G|RANBP1_uc011ahl.1_5'Flank|RANBP1_uc002zro.1_5'Flank|RANBP1_uc002zrp.2_5'Flank	NM_182984	NP_892029	Q8IZ69	TRM2A_HUMAN	HpaII tiny fragments locus 9C	403					RNA processing		nucleotide binding|RNA binding|RNA methyltransferase activity			breast(1)	1						GGAGAGATCCGGAAGGTCAGC	0.627													31	90					0	0	0.004289	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20132822	20132822	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:20132822C>T	uc002zrq.2	+	11	2303	c.2197C>T	c.(2197-2199)CCT>TCT	p.P733S	ZDHHC8_uc002zrr.1_Intron|ZDHHC8_uc010gsa.2_Missense_Mutation_p.P539S	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	733	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					CCGGCTGGGACCTGCCACCGG	0.637													44	60					0	0	0.002522	0	0
RIMBP3	85376	broad.mit.edu	37	22	20457212	20457212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:20457212G>A	uc002zsd.3	-	1	4575	c.4090C>T	c.(4090-4092)CAG>TAG	p.Q1364*		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			GCGCCCAGCTGGGGAGGTGTG	0.572													6	51					0	0	0.006214	0	0
RIMBP3	85376	broad.mit.edu	37	22	20458068	20458068	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:20458068G>A	uc002zsd.3	-	1	3719	c.3234C>T	c.(3232-3234)TTC>TTT	p.F1078F		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			AGAGTGTGTCGAAGGTGACGG	0.662													7	38					0	0	0.003080	0	0
TOP3B	8940	broad.mit.edu	37	22	22316831	22316831	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:22316831G>A	uc002zvs.2	-	13	1930	c.1495C>T	c.(1495-1497)CTC>TTC	p.L499F	TOP3B_uc010gtm.1_Missense_Mutation_p.L44F|TOP3B_uc002zvr.2_Missense_Mutation_p.L224F|TOP3B_uc010gtl.2_Missense_Mutation_p.L499F|TOP3B_uc002zvt.3_Missense_Mutation_p.L499F	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	499					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		AGCGTGATGAGCTCGGCCTCC	0.632													41	80					0	0	0.002852	0	0
VPREB1	7441	broad.mit.edu	37	22	22599436	22599436	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:22599436C>T	uc002zvx.1	+	2	151	c.125C>T	c.(124-126)ACC>ATC	p.T42I	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	42	Ig-like V-type.|Complementarity-determining-1.				immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		CTCACCTGCACCCTGAGGAAC	0.597													35	67					0	0	0.006230	0	0
LOC96610	96610	broad.mit.edu	37	22	22758781	22758781	+	RNA	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:22758781T>C	uc011aim.1	+	52		c.5866T>C								Parts of antibodies, mostly variable regions.												0						CGCAGCCGCCTTCAGTGTCTG	0.587													3	41					0	0	0.001168	0	0
CABIN1	23523	broad.mit.edu	37	22	24456554	24456554	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:24456554A>G	uc002zzi.1	+	12	1694	c.1567A>G	c.(1567-1569)ACC>GCC	p.T523A	CABIN1_uc002zzj.1_Missense_Mutation_p.T473A|CABIN1_uc002zzl.1_Missense_Mutation_p.T523A	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	523					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GAGGCACAGCACCAGCCTGCC	0.612													17	37					0	0	0.007413	0	0
CABIN1	23523	broad.mit.edu	37	22	24560498	24560498	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:24560498C>T	uc002zzi.1	+	30	5004	c.4877C>T	c.(4876-4878)TCC>TTC	p.S1626F	CABIN1_uc002zzj.1_Missense_Mutation_p.S1547F|CABIN1_uc002zzl.1_Missense_Mutation_p.S1626F|CABIN1_uc002zzm.1_Missense_Mutation_p.S51F	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1626					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CTGAAGGTGTCCTCCATGCTT	0.652													24	26					0	0	0.003330	0	0
MYO18B	84700	broad.mit.edu	37	22	26164884	26164884	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:26164884A>G	uc003abz.1	+	4	1251	c.1001A>G	c.(1000-1002)AAG>AGG	p.K334R	MYO18B_uc003aca.1_Missense_Mutation_p.K215R|MYO18B_uc010guy.1_Missense_Mutation_p.K215R|MYO18B_uc010guz.1_Missense_Mutation_p.K215R|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	334						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCCCAGAATAAGAAGGACAAA	0.552													4	14					0	0	0.009096	0	0
MYO18B	84700	broad.mit.edu	37	22	26219623	26219623	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:26219623C>T	uc003abz.1	+	13	2923	c.2673C>T	c.(2671-2673)CTC>CTT	p.L891L	MYO18B_uc003aca.1_Silent_p.L772L|MYO18B_uc010guy.1_Silent_p.L772L|MYO18B_uc010guz.1_Silent_p.L772L|MYO18B_uc011aka.1_Silent_p.L45L|MYO18B_uc011akb.1_Silent_p.L404L	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	891	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GATGGGGCCTCGAGGATGAGG	0.592													51	143					0	0	0.003610	0	0
CRYBB1	1414	broad.mit.edu	37	22	26997875	26997875	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:26997875G>A	uc003acy.1	-	5	613	c.543C>T	c.(541-543)GAC>GAT	p.D181D		NM_001887	NP_001878	P53674	CRBB1_HUMAN	crystallin, beta B1	181	Beta/gamma crystallin 'Greek key' 3.				visual perception		structural constituent of eye lens			ovary(1)	1						TGCCCACGCGGTCACTGAAGC	0.597													24	44					0	0	0.003330	0	0
EMID1	129080	broad.mit.edu	37	22	29622514	29622514	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:29622514G>A	uc003aen.2	+	5	508	c.433G>A	c.(433-435)GAG>AAG	p.E145K	EMID1_uc003aem.2_Missense_Mutation_p.E147K|EMID1_uc003aeo.2_Missense_Mutation_p.E147K|EMID1_uc003aep.2_Missense_Mutation_p.E147K	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1	145						collagen					0						AGAGCTGACAGAGCGGCTGAA	0.637													11	36					0	0	0.008291	0	0
RASL10A	10633	broad.mit.edu	37	22	29709932	29709932	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:29709932G>A	uc003aff.2	-	2	777	c.264C>T	c.(262-264)GCC>GCT	p.A88A	RASL10A_uc003afg.2_Silent_p.A88A	NM_006477	NP_006468	Q92737	RSLAA_HUMAN	RAS-related on chromosome 22 isoform a	88	Small GTPase-like.				small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity				0						CGAGCACGAAGGCGTCCGTGT	0.637													22	35					0	0	0.001882	0	0
MTMR3	8897	broad.mit.edu	37	22	30405059	30405059	+	Silent	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:30405059T>G	uc003agv.3	+	12	1390	c.1062T>G	c.(1060-1062)TCT>TCG	p.S354S	MTMR3_uc003agu.3_Silent_p.S354S|MTMR3_uc003agw.3_Silent_p.S354S	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	354	Myotubularin phosphatase.				phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			ACATTCATTCTATTCGGAGGA	0.423													52	119					0	0	0.003610	0	0
MTMR3	8897	broad.mit.edu	37	22	30416768	30416768	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:30416768G>A	uc003agv.3	+	17	3448	c.3120G>A	c.(3118-3120)CAG>CAA	p.Q1040Q	MTMR3_uc003agu.3_Silent_p.Q1040Q|MTMR3_uc003agw.3_Silent_p.Q1040Q	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	1040	Potential.				phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			GCCACCAGCAGGAAGTAGAAA	0.547													11	29					0	0	0.000978	0	0
OSM	5008	broad.mit.edu	37	22	30660329	30660329	+	Missense_Mutation	SNP	G	A	A	rs144672631		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:30660329G>A	uc003ahb.2	-	3	354	c.302C>T	c.(301-303)GCC>GTC	p.A101V		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	101					cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			GCCCAGTGTGGCATTGAGGGT	0.652													11	21					0	0	0.000978	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887877	30887877	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:30887877G>A	uc003aid.2	-	10	955	c.855C>T	c.(853-855)GGC>GGT	p.G285G	SEC14L4_uc011akz.1_Silent_p.G285G|SEC14L4_uc003aie.2_Silent_p.G270G|SEC14L4_uc003aif.2_Silent_p.G231G	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	285	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	AGGAGCCGCGGCCCACGGACC	0.627													11	20					0	0	0.000978	0	0
SLC5A4	6527	broad.mit.edu	37	22	32628921	32628921	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:32628921A>C	uc003ami.2	-	9	988	c.986T>G	c.(985-987)GTG>GGG	p.V329G		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	329	Helical; (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						CCCCGGCATCACCATGAGGAA	0.478													9	47					0	0	0.004482	0	0
RFPL3	10738	broad.mit.edu	37	22	32756276	32756276	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:32756276C>T	uc003amj.2	+	2	616	c.411C>T	c.(409-411)TTC>TTT	p.F137F	RFPL3_uc010gwn.2_Silent_p.F108F|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	137	B30.2/SPRY.						zinc ion binding			ovary(1)	1						CCAACAACTTCCTCCTCATTT	0.517													40	64					0	0	0.007835	0	0
RFPL3	10738	broad.mit.edu	37	22	32756362	32756362	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:32756362C>T	uc003amj.2	+	2	702	c.497C>T	c.(496-498)TCC>TTC	p.S166F	RFPL3_uc010gwn.2_Missense_Mutation_p.S137F|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	166	B30.2/SPRY.						zinc ion binding			ovary(1)	1						TTTGACGTGTCCGTTTGCATC	0.567													34	72					0	0	0.004289	0	0
TIMP3	7078	broad.mit.edu	37	22	33253286	33253286	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:33253286A>T	uc003anb.2	+	3	1441	c.255A>T	c.(253-255)GAA>GAT	p.E85D	SYN3_uc003amx.2_Intron|SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Intron	NM_000362	NP_000353	P35625	TIMP3_HUMAN	tissue inhibitor of metalloproteinase 3	85	NTR.				negative regulation of membrane protein ectodomain proteolysis|visual perception		metal ion binding|metalloendopeptidase inhibitor activity|protein binding			lung(1)	1						TCCATACGGAAGCTTCCGAGA	0.507													23	67					0	0	0.005443	0	0
LARGE	9215	broad.mit.edu	37	22	33780259	33780259	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:33780259C>T	uc003and.3	-	9	1503	c.924G>A	c.(922-924)CGG>CGA	p.R308R	LARGE_uc011amd.1_Silent_p.R107R|LARGE_uc003ane.3_Silent_p.R308R|LARGE_uc010gwp.2_Silent_p.R308R|LARGE_uc011ame.1_Silent_p.R240R|LARGE_uc011amf.1_Silent_p.R308R|LARGE_uc010gwq.1_RNA	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	308	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				ATTTCATCTTCCGCAGCTTAT	0.488													32	92					0	0	0.002836	0	0
LARGE	9215	broad.mit.edu	37	22	34046453	34046453	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:34046453G>A	uc003and.3	-	4	887	c.308C>T	c.(307-309)TCC>TTC	p.S103F	LARGE_uc003ane.3_Missense_Mutation_p.S103F|LARGE_uc010gwp.2_Missense_Mutation_p.S103F|LARGE_uc011ame.1_Missense_Mutation_p.S35F|LARGE_uc011amf.1_Missense_Mutation_p.S103F	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	103	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				CTCCTCCATGGAGTAGGTCTT	0.672													30	62					0	0	0.002445	0	0
APOL1	8542	broad.mit.edu	37	22	36662071	36662071	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:36662071G>A	uc003apf.2	+	6	1357	c.1189G>A	c.(1189-1191)GAA>AAA	p.E397K	APOL1_uc011amn.1_Missense_Mutation_p.E274K|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Missense_Mutation_p.E413K|APOL1_uc011amo.1_Missense_Mutation_p.E274K|APOL1_uc011amp.1_Missense_Mutation_p.E397K|APOL1_uc011amq.1_Missense_Mutation_p.E379K|APOL1_uc010gwx.2_Missense_Mutation_p.E274K	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	397					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						GGCGGACCAAGAACTGTGACC	0.438													20	44					0	0	0.010504	0	0
C1QTNF6	114904	broad.mit.edu	37	22	37581438	37581438	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:37581438G>A	uc003aqw.1	-	1	557	c.52C>T	c.(52-54)CTG>TTG	p.L18L	C1QTNF6_uc003aqx.1_Silent_p.L37L|C1QTNF6_uc003aqy.1_Silent_p.L37L|C1QTNF6_uc003aqz.1_RNA	NM_182486	NP_872292	Q9BXI9	C1QT6_HUMAN	C1q and tumor necrosis factor related protein 6	18						collagen					0						TCACACATCAGGAGAAAGAGC	0.562													9	48					0	0	0.008291	0	0
ELFN2	114794	broad.mit.edu	37	22	37770941	37770941	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:37770941G>A	uc003asq.3	-	3	1420	c.634C>T	c.(634-636)CGC>TGC	p.R212C		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	212	LRRCT.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					CACTGCAGGCGGTCGTAGTTC	0.637													8	25					0	0	0.003080	0	0
MFNG	4242	broad.mit.edu	37	22	37876261	37876261	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:37876261G>T	uc003ass.1	-	3	551	c.381C>A	c.(379-381)TTC>TTA	p.F127L	MFNG_uc011ani.1_Missense_Mutation_p.F5L|MFNG_uc011anj.1_Missense_Mutation_p.F113L|CARD10_uc003ast.1_RNA	NM_002405	NP_002396	O00587	MFNG_HUMAN	O-fucosylpeptide	127	Lumenal (Potential).				pattern specification process	extracellular space|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			lung(1)	1	Melanoma(58;0.0574)					AGAAGGTGTCGAACTCAGCAG	0.597													18	29					5.03518e-11	5.60484e-11	0.007413	1	0
NOL12	79159	broad.mit.edu	37	22	38086704	38086704	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:38086704G>A	uc003atp.2	+	5	438	c.382G>A	c.(382-384)GGA>AGA	p.G128R	NOL12_uc011anm.1_Missense_Mutation_p.G128R|NOL12_uc003ato.1_RNA|TRIOBP_uc003atq.1_5'UTR	NM_024313	NP_077289	Q9UGY1	NOL12_HUMAN	nucleolar protein 12	128						nucleolus	rRNA binding				0	Melanoma(58;0.0574)					GCCTCTTTAGGGAGGGGCTGG	0.627													54	123					0	0	0.003610	0	0
TRIOBP	11078	broad.mit.edu	37	22	38130441	38130441	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:38130441C>T	uc003atr.2	+	9	4369	c.4098C>T	c.(4096-4098)ACC>ACT	p.T1366T	TRIOBP_uc003atu.2_Silent_p.T1194T	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1366					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CAGAACTGACCCGGCGGAGCC	0.647													16	37					0	0	0.010504	0	0
POLR2F	5435	broad.mit.edu	37	22	38355370	38355370	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:38355370C>T	uc003aul.2	+	3	229	c.108C>T	c.(106-108)GTC>GTT	p.V36V	POLR2F_uc010gxi.2_Nonsense_Mutation_p.R30*|POLR2F_uc003aum.2_RNA	NM_021974	NP_068809	P61218	RPAB2_HUMAN	DNA directed RNA polymerase II polypeptide F	36					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex|nucleolus	DNA binding|DNA-directed RNA polymerase activity			breast(1)	1	Melanoma(58;0.045)					AGGAGAATGTCGAGATCCTCC	0.547													92	169					0	0	0.003610	0	0
BAIAP2L2	80115	broad.mit.edu	37	22	38503919	38503919	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:38503919C>T	uc003auw.2	-	4	360	c.216G>A	c.(214-216)GGG>GGA	p.G72G		NM_025045	NP_079321	Q6UXY1	BI2L2_HUMAN	BAI1-associated protein 2-like 2	72	IMD.				filopodium assembly|signal transduction		cytoskeletal adaptor activity|SH3 domain binding			pancreas(1)	1	Melanoma(58;0.045)					CCAAGATCTCCCCTGGAGGCA	0.637													18	53					0	0	0.004990	0	0
SUN2	25777	broad.mit.edu	37	22	39138308	39138308	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:39138308G>A	uc003awh.1	-	10	1350	c.1066C>T	c.(1066-1068)CAG>TAG	p.Q356*	SUN2_uc011anz.1_Nonsense_Mutation_p.Q391*|SUN2_uc011aoa.1_Nonsense_Mutation_p.Q345*|SUN2_uc003awi.1_Nonsense_Mutation_p.Q356*|SUN2_uc010gxq.1_Nonsense_Mutation_p.Q377*|SUN2_uc010gxr.1_Nonsense_Mutation_p.Q356*|SUN2_uc010gxs.1_Nonsense_Mutation_p.Q356*	NM_015374	NP_056189	Q9UH99	SUN2_HUMAN	unc-84 homolog B	356	Potential.|Perinuclear space.				centrosome localization|cytoskeletal anchoring at nuclear membrane|mitotic spindle organization|nuclear envelope organization|nuclear matrix anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	endosome membrane|integral to membrane|nuclear inner membrane|SUN-KASH complex	lamin binding|microtubule binding			large_intestine(1)|skin(1)	2						CCTCCTACCTGGATGCGAGCA	0.602													14	37					0	0	0.003163	0	0
ATF4	468	broad.mit.edu	37	22	39918324	39918324	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:39918324C>T	uc003axz.2	+	3	1053	c.773C>T	c.(772-774)CCC>CTC	p.P258L	ATF4_uc011aol.1_Missense_Mutation_p.P170L|ATF4_uc003aya.2_Missense_Mutation_p.P258L	NM_182810	NP_877962	P18848	ATF4_HUMAN	activating transcription factor 4	258					cellular amino acid metabolic process|gluconeogenesis|positive regulation of transcription from RNA polymerase II promoter|response to endoplasmic reticulum stress|transcription from RNA polymerase II promoter	cytoplasm|plasma membrane	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Melanoma(58;0.04)					TCTGCCCGTCCCAAACCTTAC	0.517													9	23					0	0	0.001368	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966826	39966826	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:39966826G>A	uc003ayc.2	+	1	69	c.69G>A	c.(67-69)ACG>ACA	p.T23T	CACNA1I_uc003ayd.2_Silent_p.T23T	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	23	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GAGTCACCACGGAGCAGCCCG	0.692													10	18					0	0	0.006214	0	0
CACNA1I	8911	broad.mit.edu	37	22	40045784	40045784	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:40045784G>A	uc003ayc.2	+	10	1846	c.1846G>A	c.(1846-1848)GAT>AAT	p.D616N	CACNA1I_uc003ayd.2_Missense_Mutation_p.D581N|CACNA1I_uc003aye.2_Missense_Mutation_p.D531N|CACNA1I_uc003ayf.2_Missense_Mutation_p.D496N	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	616	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ggagcaggcggaTGGGGCGGT	0.572													3	7					0	0	0.009096	0	0
CACNA1I	8911	broad.mit.edu	37	22	40080330	40080330	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:40080330G>A	uc003ayc.2	+	36	5854	c.5854G>A	c.(5854-5856)GAT>AAT	p.D1952N	CACNA1I_uc003ayd.2_Missense_Mutation_p.D1917N|CACNA1I_uc003aye.2_Missense_Mutation_p.D1867N|CACNA1I_uc003ayf.2_Missense_Mutation_p.D1832N	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1952	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CTTCTCCCCGGATGCCTCCAG	0.637													8	14					0	0	0.004482	0	0
ENTHD1	150350	broad.mit.edu	37	22	40139855	40139855	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:40139855A>G	uc003ayg.2	-	7	1904	c.1653T>C	c.(1651-1653)CTT>CTC	p.L551L		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	551	Potential.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					CCTCCCTTAAAAGAACACTAA	0.423													11	35					0	0	0.000978	0	0
TCF20	6942	broad.mit.edu	37	22	42606728	42606728	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:42606728G>A	uc003bcj.1	-	1	4718	c.4584C>T	c.(4582-4584)TTC>TTT	p.F1528F	TCF20_uc003bck.1_Silent_p.F1528F|TCF20_uc003bnt.2_Silent_p.F1528F	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1528					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CCTTTGGAGGGAAACCCTCTT	0.517													27	49					0	0	0.006320	0	0
TCF20	6942	broad.mit.edu	37	22	42611304	42611304	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:42611304G>A	uc003bcj.1	-	1	142	c.8C>T	c.(7-9)TCC>TTC	p.S3F	TCF20_uc003bck.1_Missense_Mutation_p.S3F|TCF20_uc003bnt.2_Missense_Mutation_p.S3F	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CTCCCGAAAGGACTGCATACT	0.507													36	75					0	0	0.005524	0	0
EFCAB6	64800	broad.mit.edu	37	22	43972300	43972300	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:43972300C>T	uc003bdy.1	-	26	3512	c.3297G>A	c.(3295-3297)AAG>AAA	p.K1099K	EFCAB6_uc003bdz.1_Silent_p.K947K|EFCAB6_uc010gzi.1_Silent_p.K947K|EFCAB6_uc010gzj.1_Silent_p.K325K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1099	EF-hand 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AACAGAAATCCTTAAGAACTT	0.318													23	65					0	0	0.004656	0	0
EFCAB6	64800	broad.mit.edu	37	22	43996122	43996122	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:43996122C>T	uc003bdy.1	-	23	2918	c.2703G>A	c.(2701-2703)GGG>GGA	p.G901G	EFCAB6_uc003bdz.1_Silent_p.G749G|EFCAB6_uc010gzi.1_Silent_p.G749G|EFCAB6_uc010gzj.1_Silent_p.G127G	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	901	EF-hand 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AAGTAATGTGCCCTTTTCCCT	0.423													62	128					0	0	0.003610	0	0
C22orf40	150383	broad.mit.edu	37	22	46644127	46644127	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:46644127T>C	uc003bhe.2	-	2	96	c.55A>G	c.(55-57)ACC>GCC	p.T19A	C22orf40_uc003bhc.2_Missense_Mutation_p.T19A|C22orf40_uc003bhd.2_Missense_Mutation_p.T19A|C22orf40_uc003bhf.2_RNA|uc003bhg.1_5'Flank	NM_207327	NP_997210	Q6NVV7	CV040_HUMAN	hypothetical protein LOC150383	19											0						GCTGTCAAGGTACAGAGTTCA	0.577													7	16					0	0	0.004482	0	0
ZBED4	9889	broad.mit.edu	37	22	50277967	50277967	+	Silent	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr22:50277967C>A	uc003bix.2	+	2	1127	c.657C>A	c.(655-657)CCC>CCA	p.P219P		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	219						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		TCCCGTCCCCCGATCGAATAA	0.547													19	42					5.3912e-06	5.97845e-06	0.006122	1	0
CNTN6	27255	broad.mit.edu	37	3	1414149	1414149	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:1414149G>A	uc003boz.2	+	13	1926	c.1659G>A	c.(1657-1659)AGG>AGA	p.R553R	CNTN6_uc011asj.1_Silent_p.R481R|CNTN6_uc003bpa.2_Silent_p.R553R	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	553	Ig-like C2-type 6.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		ATTTTGAAAGGATTGGAGGAG	0.353													16	43					0	0	0.007413	0	0
CNTN6	27255	broad.mit.edu	37	3	1424693	1424693	+	Missense_Mutation	SNP	C	T	T	rs147805325	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:1424693C>T	uc003boz.2	+	18	2501	c.2234C>T	c.(2233-2235)TCG>TTG	p.S745L	CNTN6_uc011asj.1_Missense_Mutation_p.S673L|CNTN6_uc003bpa.2_Missense_Mutation_p.S745L	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	745	Fibronectin type-III 2.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		CCAGTGGGCTCGACAACCTGG	0.448													26	47					0	0	0.004656	0	0
CNTN4	152330	broad.mit.edu	37	3	2928802	2928802	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:2928802A>G	uc003bpc.2	+	9	1055	c.834A>G	c.(832-834)GGA>GGG	p.G278G	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Silent_p.G278G	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	278	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AGTCAAATGGAATTCTTGAGA	0.408													16	25					0	0	0.004990	0	0
IL5RA	3568	broad.mit.edu	37	3	3133936	3133936	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:3133936C>T	uc011ask.1	-	10	1610	c.966G>A	c.(964-966)TGG>TGA	p.W322*	IL5RA_uc010hbq.2_Intron|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Nonsense_Mutation_p.W322*|IL5RA_uc011asl.1_Nonsense_Mutation_p.W322*|IL5RA_uc011asm.1_Nonsense_Mutation_p.W322*|IL5RA_uc010hbt.2_Nonsense_Mutation_p.W322*|IL5RA_uc011asn.1_Nonsense_Mutation_p.W322*|IL5RA_uc010hbu.2_Nonsense_Mutation_p.W322*|IL5RA_uc010hbp.2_Nonsense_Mutation_p.W33*	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	322	WSXWS motif.|Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		TCCACTCACTCCAGAGCCCTG	0.428													27	49					0	0	0.007291	0	0
GRM7	2917	broad.mit.edu	37	3	7620981	7620981	+	Silent	SNP	G	A	A	rs117160055		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:7620981G>A	uc003bqm.2	+	8	2662	c.2388G>A	c.(2386-2388)ACG>ACA	p.T796T	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.T796T|GRM7_uc003bql.2_Silent_p.T796T|GRM7_uc003bqn.1_Silent_p.T379T|GRM7_uc010hch.1_Silent_p.T307T	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	796	Helical; Name=6; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CTATGTACACGACATGTATAG	0.403													9	33					0	0	0.004482	0	0
SETD5	55209	broad.mit.edu	37	3	9512293	9512293	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:9512293C>T	uc003brt.2	+	19	3310	c.2875C>T	c.(2875-2877)CCA>TCA	p.P959S	SETD5_uc003bru.2_Missense_Mutation_p.P861S|SETD5_uc003brv.2_Missense_Mutation_p.P848S|SETD5_uc010hck.2_Missense_Mutation_p.P441S|SETD5_uc003brx.2_Missense_Mutation_p.P628S	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	959										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		GACTGGTTTCCCAAGCAGAAG	0.512													46	96					0	0	0.003610	0	0
TMEM111	55831	broad.mit.edu	37	3	10012301	10012301	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:10012301C>T	uc003bun.2	-	6	718	c.539G>A	c.(538-540)CGG>CAG	p.R180Q	CIDEC_uc003bto.2_Intron|TMEM111_uc003buo.2_Missense_Mutation_p.R180Q	NM_018447	NP_060917	Q9P0I2	TM111_HUMAN	transmembrane protein 111	180						integral to membrane					0						GTAAATGCTCCGAAGCCCAAA	0.403													27	89					0	0	0.009535	0	0
TATDN2	9797	broad.mit.edu	37	3	10311938	10311938	+	Missense_Mutation	SNP	C	T	T	rs139610197		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:10311938C>T	uc003bvg.2	+	4	1653	c.1072C>T	c.(1072-1074)CCG>TCG	p.P358S	TATDN2_uc003bvf.2_Missense_Mutation_p.P358S|TATDN2_uc011atr.1_Missense_Mutation_p.P358S|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	358						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						TTCAGCCGTTCCGGAGCCTTC	0.532													53	111					0	0	0.003610	0	0
SEC13	6396	broad.mit.edu	37	3	10357052	10357052	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:10357052G>A	uc003bvn.2	-	3	236	c.117C>T	c.(115-117)ATC>ATT	p.I39I	SEC13_uc003bvl.2_5'Flank|SEC13_uc003bvm.2_Silent_p.I25I|SEC13_uc003bvp.2_Silent_p.I42I|SEC13_uc003bvo.2_Silent_p.I85I|SEC13_uc003bvq.1_Silent_p.I25I|SEC13_uc003bvr.1_Silent_p.I25I|SEC13_uc011aul.1_Silent_p.I39I	NM_183352	NP_899195	P55735	SEC13_HUMAN	SEC13 protein isoform 1	39	WD 1.				COPII vesicle coating|intracellular protein transport|mitotic prometaphase|mRNA transport|post-translational protein modification|protein N-linked glycosylation via asparagine|transmembrane transport	cytosol|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Nup107-160 complex	protein binding			ovary(1)	1						GCACATCAAAGATTTTGACGG	0.597													11	47					0	0	0.001855	0	0
HRH1	3269	broad.mit.edu	37	3	11301359	11301359	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:11301359G>A	uc010hdr.2	+	2	978	c.636G>A	c.(634-636)AAG>AAA	p.K212K	HRH1_uc010hds.2_Silent_p.K212K|HRH1_uc010hdt.2_Silent_p.K212K|HRH1_uc003bwb.3_Silent_p.K212K	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	212	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TCTATGCCAAGATCTACAAGG	0.512													49	98					0	0	0.003610	0	0
RPL32	6161	broad.mit.edu	37	3	12881705	12881705	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:12881705T>C	uc003bxl.2	-	1	245	c.32A>G	c.(31-33)AAG>AGG	p.K11R	RPL32_uc003bxm.2_Missense_Mutation_p.K11R|RPL32_uc003bxn.2_Missense_Mutation_p.K11R	NM_001007074	NP_001007075	P62910	RL32_HUMAN	ribosomal protein L32	11					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	protein binding|structural constituent of ribosome			ovary(1)	1						TTTGACGATCTTGGGCTTCAC	0.537													59	136					0	0	0.003610	0	0
IQSEC1	9922	broad.mit.edu	37	3	12954973	12954973	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:12954973G>A	uc003bxt.2	-	9	2322	c.2313C>T	c.(2311-2313)CTC>CTT	p.L771L	IQSEC1_uc003bxu.3_Silent_p.L649L|IQSEC1_uc011auw.1_Silent_p.L757L	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	771					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						GGTGTAGTCCGAGTTTCTGGG	0.582													9	22					0	0	0.004482	0	0
GRIP2	80852	broad.mit.edu	37	3	14565160	14565160	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:14565160G>A	uc011avi.1	-	6	740	c.740C>T	c.(739-741)TCC>TTC	p.S247F	GRIP2_uc011avh.1_5'UTR|GRIP2_uc003byu.1_3'UTR|GRIP2_uc003byv.1_Missense_Mutation_p.S150F	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	150	PDZ 2.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						CTTGTAGAGGGAGACGTCCAC	0.498													8	18					0	0	0.004482	0	0
GRIP2	80852	broad.mit.edu	37	3	14581890	14581890	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:14581890G>A	uc011avi.1	-	2	217	c.217C>T	c.(217-219)CTG>TTG	p.L73L	GRIP2_uc011avh.1_5'UTR|GRIP2_uc003byv.1_5'UTR	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	Error:Variant_position_missing_in_Q9C0E4_after_alignment					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						CCCCTCCCCAGGGAGGGGCTG	0.662													6	15					0	0	0.001984	0	0
PLCL2	23228	broad.mit.edu	37	3	17052326	17052326	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:17052326C>T	uc011awc.1	+	5	1569	c.1464C>T	c.(1462-1464)TTC>TTT	p.F488F	PLCL2_uc010het.1_Intron|PLCL2_uc011awd.1_Silent_p.F370F	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	496	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						AGATAGTTTTCCGCAGTGTCA	0.398													23	44					0	0	0.002780	0	0
PLCL2	23228	broad.mit.edu	37	3	17053022	17053022	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:17053022C>T	uc011awc.1	+	5	2265	c.2160C>T	c.(2158-2160)CTC>CTT	p.L720L	PLCL2_uc011awd.1_Silent_p.L602L	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	728	PI-PLC Y-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GCTATGTCCTCCGGCCAGCCA	0.488													19	42					0	0	0.010504	0	0
KAT2B	8850	broad.mit.edu	37	3	20168972	20168972	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:20168972C>T	uc003cbq.2	+	11	2126	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	560	N-acetyltransferase.				cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GTATCTGTTTCCGTATGTTCC	0.383													27	60					0	0	0.004656	0	0
TOP2B	7155	broad.mit.edu	37	3	25670418	25670418	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:25670418G>A	uc011awn.1	-	15	1869	c.1826C>T	c.(1825-1827)TCC>TTC	p.S609F	TOP2B_uc003cdj.2_Missense_Mutation_p.S604F	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	609					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						ACTGTAGAAGGAAAGTTCCTG	0.259													13	35					0	0	0.003163	0	0
ZCWPW2	152098	broad.mit.edu	37	3	28555609	28555609	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:28555609A>G	uc003ceh.2	+	7	880	c.712A>G	c.(712-714)AAA>GAA	p.K238E	ZCWPW2_uc003cei.2_Missense_Mutation_p.K238E|ZCWPW2_uc010hfo.2_Missense_Mutation_p.K43E	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	238							zinc ion binding			ovary(2)	2						TAGAAAAAGGAAAAGGTATGC	0.259													5	7					0	0	0.000602	0	0
CCR4	1233	broad.mit.edu	37	3	32995348	32995348	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:32995348C>T	uc003cfg.1	+	2	602	c.434C>T	c.(433-435)TCC>TTC	p.S145F		NM_005508	NP_005499	P51679	CCR4_HUMAN	chemokine (C-C motif) receptor 4	145	Cytoplasmic (Potential).				chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response	integral to plasma membrane				lung(1)	1						GCGGTGTTTTCCTTGAGGGCA	0.483													66	121					0	0	0.003610	0	0
ARPP21	10777	broad.mit.edu	37	3	35750524	35750524	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:35750524G>A	uc003cgb.2	+	11	1123	c.859G>A	c.(859-861)GAA>AAA	p.E287K	ARPP21_uc003cga.2_Intron|ARPP21_uc011axy.1_Intron|ARPP21_uc003cgf.2_Intron	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	287						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GAGAGAAGAGGAATATCAGAG	0.403													10	18					0	0	0.000978	0	0
TRANK1	9881	broad.mit.edu	37	3	36874141	36874141	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:36874141G>A	uc003cgj.2	-	12	5453	c.5151C>T	c.(5149-5151)ATC>ATT	p.I1717I		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2267					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACAGAAAGTGGATGTACTCCT	0.468													25	61					0	0	0.003954	0	0
TRANK1	9881	broad.mit.edu	37	3	36879994	36879994	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:36879994C>T	uc003cgj.2	-	10	3906	c.3604G>A	c.(3604-3606)GAA>AAA	p.E1202K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1752					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AACTGCTTTTCCCTAGGGGAA	0.438													12	39					0	0	0.001368	0	0
DLEC1	9940	broad.mit.edu	37	3	38103711	38103711	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38103711C>T	uc003cho.1	+	4	746	c.725C>T	c.(724-726)TCC>TTC	p.S242F	DLEC1_uc003chp.1_Missense_Mutation_p.S242F|DLEC1_uc010hgv.1_Missense_Mutation_p.S242F|DLEC1_uc010hgw.1_5'Flank|DLEC1_uc003chq.1_5'Flank	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	242					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GAGAAGCGTTCCGTCCAGAAG	0.463													24	59					0	0	0.005443	0	0
XYLB	9942	broad.mit.edu	37	3	38414185	38414185	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38414185C>T	uc003cic.2	+	10	914	c.805C>T	c.(805-807)CCT>TCT	p.P269S	XYLB_uc011ayp.1_Missense_Mutation_p.P132S|XYLB_uc003cid.1_Missense_Mutation_p.P191S	NM_005108	NP_005099	O75191	XYLB_HUMAN	xylulokinase	269					D-xylose metabolic process|generation of precursor metabolites and energy|xylulose catabolic process		ATP binding|xylulokinase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.00372)|Kidney(284;0.00405)		CTACGGATTTCCTCCAGGATG	0.567													24	42					0	0	0.005443	0	0
ACVR2B	93	broad.mit.edu	37	3	38519999	38519999	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38519999T>A	uc003cif.2	+	5	680	c.656T>A	c.(655-657)TTC>TAC	p.F219Y	ACVR2B_uc003cig.2_Missense_Mutation_p.F10Y	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	219	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		GTCAAGATCTTCCCACTCCAG	0.577													28	58					0	0	0.002096	0	0
SCN5A	6331	broad.mit.edu	37	3	38622442	38622442	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38622442C>T	uc003cio.2	-	17	3402	c.3208G>A	c.(3208-3210)GAG>AAG	p.E1070K	SCN5A_uc003cin.2_Missense_Mutation_p.E1070K|SCN5A_uc003cil.3_Missense_Mutation_p.E1070K|SCN5A_uc010hhi.2_Missense_Mutation_p.E1070K|SCN5A_uc010hhk.2_Missense_Mutation_p.E1070K|SCN5A_uc011ayr.1_Missense_Mutation_p.E1070K|SCN5A_uc010hhj.1_Missense_Mutation_p.E681K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1070					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GACTCCTCCTCCGTGCCCAGG	0.627													11	42					0	0	0.000978	0	0
SCN5A	6331	broad.mit.edu	37	3	38648291	38648291	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38648291C>T	uc003cio.2	-	9	1203	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	SCN5A_uc003cin.2_Missense_Mutation_p.E337K|SCN5A_uc003cil.3_Missense_Mutation_p.E337K|SCN5A_uc010hhi.2_Missense_Mutation_p.E337K|SCN5A_uc010hhk.2_Missense_Mutation_p.E337K|SCN5A_uc011ayr.1_Missense_Mutation_p.E337K|SCN5A_uc010hhj.1_5'Flank	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	337					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGGTAGCCCTCCGGACATGTC	0.602													21	62					0	0	0.003954	0	0
SCN5A	6331	broad.mit.edu	37	3	38671874	38671874	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38671874G>A	uc003cio.2	-	3	514	c.320C>T	c.(319-321)GCC>GTC	p.A107V	SCN5A_uc003cin.2_Missense_Mutation_p.A107V|SCN5A_uc003cil.3_Missense_Mutation_p.A107V|SCN5A_uc010hhi.2_Missense_Mutation_p.A107V|SCN5A_uc010hhk.2_Missense_Mutation_p.A107V|SCN5A_uc011ayr.1_Missense_Mutation_p.A107V	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	107					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGCGTTGGTGGCACTGAACCG	0.512													30	89					0	0	0.002836	0	0
SCN10A	6336	broad.mit.edu	37	3	38763812	38763812	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38763812G>A	uc003ciq.2	-	19	3444	c.3444C>T	c.(3442-3444)ATC>ATT	p.I1148I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1148	III.|Helical; Name=S1 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGTGCTCCACGATACGGTAGC	0.557													27	62					0	0	0.003954	0	0
SCN10A	6336	broad.mit.edu	37	3	38770081	38770081	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38770081G>A	uc003ciq.2	-	15	2592	c.2592C>T	c.(2590-2592)TCC>TCT	p.S864S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	864	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGAGGCATATGGATTTTTGGC	0.522													13	52					0	0	0.001368	0	0
SCN10A	6336	broad.mit.edu	37	3	38770144	38770144	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38770144G>A	uc003ciq.2	-	15	2529	c.2529C>T	c.(2527-2529)TTC>TTT	p.F843F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	843	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGAGGATACGGAAGACAATGA	0.502													10	35					0	0	0.008291	0	0
SCN10A	6336	broad.mit.edu	37	3	38835385	38835385	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38835385C>T	uc003ciq.2	-	1	117	c.117G>A	c.(115-117)GAG>GAA	p.E39E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	39					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCCTATGCTTCTCTCTGGCTT	0.532													37	88					0	0	0.004878	0	0
SCN11A	11280	broad.mit.edu	37	3	38888386	38888386	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38888386G>A	uc011ays.1	-	26	5374	c.5175C>T	c.(5173-5175)GTC>GTT	p.V1725V		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1725					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGGTGGTGGTGACTATGGGTT	0.383													6	154					0	0	0.001984	0	0
SCN11A	11280	broad.mit.edu	37	3	38888526	38888526	+	Missense_Mutation	SNP	G	A	A	rs143537709		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:38888526G>A	uc011ays.1	-	26	5234	c.5035C>T	c.(5035-5037)CGC>TGC	p.R1679C		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1679					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.R1679C(1)		skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAGTGGAGGCGATCTTCACTC	0.463													23	57					0	0	0.001882	0	0
XIRP1	165904	broad.mit.edu	37	3	39230591	39230591	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:39230591C>T	uc003cjk.1	-	2	567	c.346G>A	c.(346-348)GAG>AAG	p.E116K	XIRP1_uc003cji.2_Missense_Mutation_p.E116K|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	116							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		AGCACGGGCTCCTTGGCAGCT	0.607													27	56					0	0	0.007291	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307587	39307587	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:39307587C>T	uc003cjl.2	-	2	506	c.414G>A	c.(412-414)ATG>ATA	p.M138I		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	138	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		TCCGGTTGTTCATGGAGTTGG	0.537													29	67					0	0	0.002445	0	0
ENTPD3	956	broad.mit.edu	37	3	40457387	40457388	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:40457387_40457388GG>AT	uc003ckd.3	+	7	746_747	c.654_655GG>AT	c.(652-657)CTGGAC>CTATAC	p.D219Y	ENTPD3_uc010hhy.2_Missense_Mutation_p.D219Y|uc003cke.3_Intron	NM_001248	NP_001239	O75355	ENTP3_HUMAN	ectonucleoside triphosphate diphosphohydrolase	219	Extracellular (Potential).			D->E: Increase of activity.		integral to membrane	ATP binding|hydrolase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0605)|Kidney(284;0.0758)		CGGGTGCCCTGGACTTAGGTGG	0.54													10	35					0	0	0.004672	0	0
ZNF619	285267	broad.mit.edu	37	3	40523356	40523356	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:40523356C>T	uc011azb.1	+	3	305	c.27C>T	c.(25-27)GGC>GGT	p.G9G	ZNF619_uc010hhz.2_5'UTR|ZNF619_uc003ckj.2_5'UTR|ZNF619_uc011azc.1_Silent_p.G9G|ZNF619_uc011azd.1_Intron|ZNF619_uc011aza.1_5'UTR	NM_001145082	NP_001138554	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619 isoform 1	9					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		TTGTGCAGGGCTTGGGCAGGA	0.532													33	58					0	0	0.009535	0	0
ZNF621	285268	broad.mit.edu	37	3	40571772	40571772	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:40571772C>T	uc003ckm.2	+	4	440	c.224C>T	c.(223-225)CCC>CTC	p.P75L	ZNF621_uc003ckn.2_Missense_Mutation_p.P75L|ZNF621_uc003cko.2_Missense_Mutation_p.P40L|ZNF621_uc011aze.1_Missense_Mutation_p.P67L	NM_001098414	NP_001091884	Q6ZSS3	ZN621_HUMAN	zinc finger protein 621	75	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0515)|Kidney(284;0.0648)		GGCCCAGATCCCTGGGACACC	0.483													20	78					0	0	0.010504	0	0
CDCP1	64866	broad.mit.edu	37	3	45127251	45127251	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:45127251G>A	uc003com.2	-	9	2525	c.2390C>T	c.(2389-2391)TCC>TTC	p.S797F		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	797	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CTCAGGAGGGGAGCGAGGAGG	0.587													28	52					0	0	0.007291	0	0
FYCO1	79443	broad.mit.edu	37	3	46008470	46008470	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:46008470G>A	uc003cpb.3	-	8	2562	c.2356C>T	c.(2356-2358)CAA>TAA	p.Q786*	FYCO1_uc011bal.1_Nonsense_Mutation_p.Q786*	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	786	Potential.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		TGCAGCCGTTGGACCTCCCCC	0.642													23	42					0	0	0.003954	0	0
XCR1	2829	broad.mit.edu	37	3	46062686	46062686	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:46062686G>A	uc003cpe.2	-	3	978	c.754C>T	c.(754-756)CGG>TGG	p.R252W	uc003cpd.1_5'Flank|XCR1_uc003cpf.2_Missense_Mutation_p.R252W	NM_005283	NP_005274	P46094	XCR1_HUMAN	XC chemokine receptor 1	252	Extracellular (Potential).				chemotaxis|G-protein signaling, coupled to cyclic nucleotide second messenger|inflammatory response	integral to plasma membrane	chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		ATCTGGGTCCGAAACAGCGTC	0.602													15	33					0	0	0.004007	0	0
LTF	4057	broad.mit.edu	37	3	46485071	46485071	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:46485071C>T	uc003cpq.2	-	13	1554	c.1516G>A	c.(1516-1518)GAA>AAA	p.E506K	LTF_uc003fzr.2_Missense_Mutation_p.E462K|LTF_uc010hjh.2_Missense_Mutation_p.E504K|LTF_uc003cpr.2_Missense_Mutation_p.E493K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	506	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	CTGAAATATTCATCTGGAGAG	0.502													40	114					0	0	0.003214	0	0
PRSS42	339906	broad.mit.edu	37	3	46873503	46873503	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:46873503G>A	uc011bap.1	-	4	655	c.655C>T	c.(655-657)CTT>TTT	p.L219F	PRSS42_uc003cqj.2_Intron	NM_182702	NP_874361	Q7Z5A4	PRS42_HUMAN	testis serine protease 2 precursor	219	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			pancreas(1)	1						ACATCCTGAAGAATTTCTGAT	0.413													14	32					0	0	0.002450	0	0
PTH1R	5745	broad.mit.edu	37	3	46944953	46944953	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:46944953G>A	uc003cqm.2	+	16	1792	c.1589G>A	c.(1588-1590)GGC>GAC	p.G530D	PTH1R_uc003cqn.2_Missense_Mutation_p.G530D	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	530	Cytoplasmic (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						ACCACCAACGGCCACCCTCAG	0.682									Ollier_disease_/_Maffuci_syndrome				19	49					0	0	0.008871	0	0
COL7A1	1294	broad.mit.edu	37	3	48612933	48612933	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:48612933C>T	uc003ctz.2	-	73	6020	c.6019G>A	c.(6019-6021)GAC>AAC	p.D2007N		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2007	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCTCCACGGTCGCCCTTCAGC	0.697													5	14					0	0	0.000602	0	0
SLC25A20	788	broad.mit.edu	37	3	48921519	48921519	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:48921519G>A	uc003cva.3	-	3	412	c.237C>T	c.(235-237)ATC>ATT	p.I79I	SLC25A20_uc011bbw.1_Silent_p.I29I|SLC25A20_uc010hkj.2_Intron	NM_000387	NP_000378	O43772	MCAT_HUMAN	carnitine/acylcarnitine translocase	79	Solcar 1.|Helical; Name=2; (Potential).				carnitine shuttle|cellular lipid metabolic process|regulation of fatty acid oxidation	integral to membrane|mitochondrial inner membrane	acyl carnitine transporter activity				0				BRCA - Breast invasive adenocarcinoma(193;0.000168)|Kidney(197;0.00231)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)	L-Carnitine(DB00583)	TGACCCCGATGATAGGGGCAG	0.488													31	50					0	0	0.008361	0	0
USP19	10869	broad.mit.edu	37	3	49148963	49148963	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:49148963G>C	uc003cwd.1	-	20	3039	c.2878C>G	c.(2878-2880)CCA>GCA	p.P960A	USP19_uc003cwa.2_Missense_Mutation_p.P768A|USP19_uc003cvz.3_Missense_Mutation_p.P1063A|USP19_uc011bcg.1_Missense_Mutation_p.P1051A|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.P718A|USP19_uc011bch.1_Missense_Mutation_p.P1061A	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	960	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TCGCCAGCTGGCAAGGAGCCA	0.612													15	38					0	0	0.002450	0	0
BSN	8927	broad.mit.edu	37	3	49694838	49694838	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:49694838G>A	uc003cxe.3	+	5	7963	c.7849G>A	c.(7849-7851)GAA>AAA	p.E2617K		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2617					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GACGGACGACGAAGACAGTGC	0.652													23	26					0	0	0.003330	0	0
RNF123	63891	broad.mit.edu	37	3	49753392	49753392	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:49753392C>T	uc003cxh.2	+	33	3374	c.3288C>T	c.(3286-3288)TTC>TTT	p.F1096F	RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	1096						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		CTGAGATATTCCTTGACTGGA	0.592													30	58					0	0	0.002445	0	0
AMIGO3	386724	broad.mit.edu	37	3	49756836	49756836	+	Silent	SNP	C	T	T	rs140696690		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:49756836C>T	uc003cxj.2	-	1	403	c.63G>A	c.(61-63)CCG>CCA	p.P21P	RNF123_uc003cxh.2_Intron|RNF123_uc003cxi.2_Intron	NM_198722	NP_942015	Q86WK7	AMGO3_HUMAN	adhesion molecule with Ig-like domain 3	21	Extracellular (Potential).				heterophilic cell-cell adhesion	integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CCTCGGAGTCCGGGGTGCCTA	0.642											OREG0015572	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	52					0	0	0.001882	0	0
RAD54L2	23132	broad.mit.edu	37	3	51697086	51697086	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:51697086C>T	uc011bdt.1	+	22	4179	c.4054C>T	c.(4054-4056)CCC>TCC	p.P1352S	RAD54L2_uc003dbh.2_Missense_Mutation_p.P941S|RAD54L2_uc011bdu.1_Missense_Mutation_p.P1046S|RAD54L2_uc003dbj.2_Missense_Mutation_p.P678S	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1352						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		GCCAGCAGGCCCCGTCAGTTC	0.577													29	75					0	0	0.008361	0	0
DUSP7	1849	broad.mit.edu	37	3	52084953	52084953	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:52084953C>T	uc003dct.2	-	3	1217	c.1138G>A	c.(1138-1140)GAC>AAC	p.D380N		NM_001947	NP_001938	Q16829	DUS7_HUMAN	dual specificity phosphatase 7	380					inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein binding|protein tyrosine phosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;5.14e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CGCTCAAAGTCCAGCAGCTGC	0.552													30	43					0	0	0.003755	0	0
DNAH1	25981	broad.mit.edu	37	3	52398929	52398929	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:52398929C>T	uc011bef.1	+	34	5673	c.5412C>T	c.(5410-5412)ATC>ATT	p.I1804I		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1804					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TCTCTGGCATCGTGTCCGACC	0.607													27	65					0	0	0.005443	0	0
DNAH1	25981	broad.mit.edu	37	3	52422227	52422227	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:52422227C>T	uc011bef.1	+	57	9309	c.9048C>T	c.(9046-9048)ATC>ATT	p.I3016I	DNAH1_uc003ddv.2_5'UTR	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3016	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGCCGTACATCGATAATGAAG	0.562													5	7					0	0	0.003080	0	0
DNAH1	25981	broad.mit.edu	37	3	52422519	52422519	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:52422519A>C	uc011bef.1	+	58	9518	c.9257A>C	c.(9256-9258)GAC>GCC	p.D3086A	DNAH1_uc003ddv.2_5'UTR	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3086	Potential.|Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GAGGTGGAGGACGGCATCGCC	0.617													4	12					0	0	0.009096	0	0
STAB1	23166	broad.mit.edu	37	3	52550252	52550252	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:52550252G>A	uc003dej.2	+	38	4216	c.4142G>A	c.(4141-4143)GGA>GAA	p.G1381E	STAB1_uc003dek.1_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1381	Laminin EGF-like 1.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		AACTGCACCGGAGGTGAGGAC	0.687													18	23					0	0	0.007413	0	0
ITIH1	3697	broad.mit.edu	37	3	52818456	52818456	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:52818456G>A	uc003dfs.2	+	11	1394	c.1370G>A	c.(1369-1371)AGA>AAA	p.R457K	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.R58K|ITIH1_uc010hmo.1_Missense_Mutation_p.R11K	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	457	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CGGGCCCAGAGAATCTACGAG	0.587													18	51					0	0	0.008871	0	0
RFT1	91869	broad.mit.edu	37	3	53138009	53138009	+	Silent	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:53138009A>C	uc003dgj.2	-	10	1116	c.1062T>G	c.(1060-1062)GCT>GCG	p.A354A	RFT1_uc003dgk.2_Silent_p.A315A	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	354	Helical; (Potential).				carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		AGATATCCAGAGCCAGCTGAG	0.512													17	46					0	0	0.007413	0	0
PRKCD	5580	broad.mit.edu	37	3	53213622	53213622	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:53213622C>T	uc003dgl.2	+	4	498	c.145C>T	c.(145-147)CCG>TCG	p.P49S	PRKCD_uc003dgm.2_Missense_Mutation_p.P49S|PRKCD_uc003dgn.2_Missense_Mutation_p.P49S	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	49	C2.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		GCAGAAGAAGCCGACCATGTA	0.592													7	24					0	0	0.003080	0	0
DCP1A	55802	broad.mit.edu	37	3	53326711	53326711	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:53326711G>A	uc003dgs.3	-	7	864	c.771C>T	c.(769-771)TTC>TTT	p.F257F	DCP1A_uc003dgt.3_RNA	NM_018403	NP_060873	Q9NPI6	DCP1A_HUMAN	DCP1 decapping enzyme homolog A	257					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus	hydrolase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000164)|KIRC - Kidney renal clear cell carcinoma(197;0.00525)|Kidney(197;0.00579)|OV - Ovarian serous cystadenocarcinoma(275;0.0647)		GAAATGGTAGGAATGAATTGG	0.522													6	19					0	0	0.001168	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55052317	55052317	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:55052317G>A	uc003dhf.2	+	35	3008	c.2960G>A	c.(2959-2961)GGG>GAG	p.G987E	CACNA2D3_uc003dhg.1_Missense_Mutation_p.G893E|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	987	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GAGACTACAGGGAATATTGCT	0.512													11	20					0	0	0.000978	0	0
WNT5A	7474	broad.mit.edu	37	3	55508524	55508524	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:55508524C>T	uc003dhn.2	-	4	843	c.525G>A	c.(523-525)CGG>CGA	p.R175R	WNT5A_uc003dhm.2_Silent_p.R160R|WNT5A_uc010hmw.2_Silent_p.R160R|WNT5A_uc010hmx.2_Silent_p.R86R	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	175					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		AGAGCCAGTCCCGCGGCAGGT	0.726													4	5					0	0	0.000602	0	0
ERC2	26059	broad.mit.edu	37	3	56468846	56468846	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:56468846G>A	uc003dhr.1	-	2	446	c.190C>T	c.(190-192)CTG>TTG	p.L64L		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	64						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TGATCACTCAGATACATGGGT	0.512													42	105					0	0	0.009718	0	0
SPATA12	353324	broad.mit.edu	37	3	57107844	57107844	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:57107844C>G	uc003dij.1	+	2	797	c.122C>G	c.(121-123)ACC>AGC	p.T41S	ARHGEF3_uc003dih.2_Intron	NM_181727	NP_859078	Q7Z6I5	SPT12_HUMAN	spermatogenesis associated 12	41											0				KIRC - Kidney renal clear cell carcinoma(284;0.0111)|Kidney(284;0.0129)		GGGTCATCCACCCAACATCCC	0.577													24	50					0	0	0.003330	0	0
APPL1	26060	broad.mit.edu	37	3	57271521	57271521	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:57271521A>T	uc003dio.2	+	3	302	c.155A>T	c.(154-156)AAT>ATT	p.N52I	APPL1_uc010hnb.2_Missense_Mutation_p.N52I|APPL1_uc011bey.1_Missense_Mutation_p.N35I	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	52	Required for RAB5A binding.				apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		TTTCCATAGAATGAATTAAGT	0.229													6	18					0	0	0.001984	0	0
APPL1	26060	broad.mit.edu	37	3	57291392	57291392	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:57291392G>C	uc003dio.2	+	15	1513	c.1366G>C	c.(1366-1368)GAC>CAC	p.D456H	APPL1_uc010hnb.2_Missense_Mutation_p.D456H|APPL1_uc011bey.1_Missense_Mutation_p.D439H	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	456					apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		AATACAGTTTGACATAATTTC	0.502													25	69					0	0	0.003330	0	0
CADPS	8618	broad.mit.edu	37	3	62739277	62739277	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:62739277C>T	uc003dll.2	-	3	1087	c.727G>A	c.(727-729)GCC>ACC	p.A243T	CADPS_uc003dlm.2_Missense_Mutation_p.A243T|CADPS_uc003dln.2_Missense_Mutation_p.A243T	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	243					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		CGGTAGATGGCATCAAATTTG	0.567													28	54					0	0	0.005443	0	0
MAGI1	9223	broad.mit.edu	37	3	65342697	65342697	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:65342697C>T	uc003dmn.2	-	23	4271	c.3745G>A	c.(3745-3747)GAT>AAT	p.D1249N	MAGI1_uc003dmm.2_3'UTR	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1278					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TTGTGAAGATCGGGTGGGTAA	0.612													47	70					0	0	0.003610	0	0
KBTBD8	84541	broad.mit.edu	37	3	67054070	67054070	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:67054070G>A	uc003dmy.2	+	3	732	c.679G>A	c.(679-681)GAA>AAA	p.E227K	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	227	BACK.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		TGAACAGAATGAAAGAGAAGT	0.378													18	34					0	0	0.004990	0	0
ROBO2	6092	broad.mit.edu	37	3	77666749	77666749	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:77666749G>A	uc003dpy.3	+	22	4022	c.3379G>A	c.(3379-3381)GAT>AAT	p.D1127N	ROBO2_uc003dpz.2_Missense_Mutation_p.D1131N|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.D1131N|ROBO2_uc003dqa.2_Missense_Mutation_p.D254N	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1127	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		AGAAGATGATGATAGGGTCCC	0.488													18	73					0	0	0.006122	0	0
CADM2	253559	broad.mit.edu	37	3	85984956	85984956	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:85984956C>T	uc003dqj.2	+	6	1339	c.713C>T	c.(712-714)CCA>CTA	p.P238L	CADM2_uc003dqk.2_Missense_Mutation_p.P247L|CADM2_uc003dql.2_Missense_Mutation_p.P240L	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	238	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		ACTCCTTTTCCACAAGAAGGA	0.284													41	96					0	0	0.003214	0	0
HTR1F	3355	broad.mit.edu	37	3	88040349	88040349	+	Silent	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:88040349A>T	uc003dqr.2	+	2	608	c.450A>T	c.(448-450)ATA>ATT	p.I150I		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	150	Helical; Name=4; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	TTTGGATTATATCTGTTTTTA	0.418													10	26					0	0	0.008291	0	0
STX19	415117	broad.mit.edu	37	3	93733721	93733721	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:93733721C>T	uc003drh.1	-	2	650	c.393G>A	c.(391-393)AGG>AGA	p.R131R	ARL13B_uc003drc.2_Intron|ARL13B_uc010hop.2_Intron|ARL13B_uc003drd.2_Intron|ARL13B_uc003dre.2_Intron|ARL13B_uc003drf.2_Intron|ARL13B_uc003drg.2_Intron	NM_001001850	NP_001001850	Q8N4C7	STX19_HUMAN	syntaxin 19	131					intracellular protein transport|vesicle-mediated transport	membrane	SNAP receptor activity				0						ATTTAAGTATCCTTGTGACCA	0.353													37	95					0	0	0.005524	0	0
GABRR3	200959	broad.mit.edu	37	3	97731256	97731256	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:97731256G>A	uc011bgr.1	-	4	462	c.462C>T	c.(460-462)ATC>ATT	p.I154I		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	154	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						TTGTATCATGGATGAAGGATC	0.438													15	43					0	0	0.003163	0	0
OR5H1	26341	broad.mit.edu	37	3	97852245	97852245	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:97852245G>T	uc011bgt.1	+	1	704	c.704G>T	c.(703-705)AGG>ATG	p.R235M		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AAAGGTGTAAGGAAAGCCTTT	0.403													26	63					5.35047e-06	5.93552e-06	0.003330	1	0
OR5H14	403273	broad.mit.edu	37	3	97868450	97868450	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:97868450C>T	uc003dsg.1	+	1	221	c.221C>T	c.(220-222)TCA>TTA	p.S74L		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCTTTGTTATCATCCTCAGTG	0.398													85	148					0	0	0.003610	0	0
GPR15	2838	broad.mit.edu	37	3	98251496	98251496	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:98251496C>T	uc011bgy.1	+	1	619	c.619C>T	c.(619-621)CCT>TCT	p.P207S		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	207	Helical; Name=5; (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		CTTTTTTGTCCCTTTGTTGAG	0.428													24	82					0	0	0.003330	0	0
COL8A1	1295	broad.mit.edu	37	3	99513110	99513110	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:99513110C>T	uc003dtg.1	+	5	610	c.365C>T	c.(364-366)CCC>CTC	p.P122L	COL8A1_uc003dth.1_Missense_Mutation_p.P122L|COL8A1_uc003dti.1_Missense_Mutation_p.P123L	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	122	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GAACAAGGTCCCCGTGGAGAG	0.527													14	24					0	0	0.006122	0	0
TBC1D23	55773	broad.mit.edu	37	3	100016779	100016779	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:100016779C>T	uc003dtt.2	+	9	1066	c.889C>T	c.(889-891)CTC>TTC	p.L297F	TBC1D23_uc003dts.2_Missense_Mutation_p.L297F	NM_018309	NP_060779	Q9NUY8	TBC23_HUMAN	TBC1 domain family, member 23	297						intracellular	Rab GTPase activator activity			ovary(1)|liver(1)	2						TAATCACCATCTCTTTGGTAG	0.343													15	27					0	0	0.010504	0	0
NFKBIZ	64332	broad.mit.edu	37	3	101574613	101574613	+	Missense_Mutation	SNP	A	G	G	rs115993928	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:101574613A>G	uc003dvp.2	+	9	1806	c.1691A>G	c.(1690-1692)AAT>AGT	p.N564S	NFKBIZ_uc003dvo.2_Missense_Mutation_p.N464S|NFKBIZ_uc010hpo.2_Missense_Mutation_p.N464S|NFKBIZ_uc003dvq.2_Missense_Mutation_p.N442S	NM_031419	NP_113607	Q9BYH8	IKBZ_HUMAN	nuclear factor of kappa light polypeptide gene	564	Interaction with NFKB1/p50 (By similarity).|ANK 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(2)	2						ATAGCCCACAATGCTGTGGTC	0.443													32	42					0	0	0.002445	0	0
HHLA2	11148	broad.mit.edu	37	3	108076803	108076803	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:108076803G>A	uc003dwy.3	+	6	965	c.798G>A	c.(796-798)GGG>GGA	p.G266G	HHLA2_uc011bhl.1_Silent_p.G202G|HHLA2_uc010hpu.2_Silent_p.G266G|HHLA2_uc003dwz.2_Silent_p.G266G	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	266	Ig-like V-type 2.					integral to membrane				ovary(1)	1						TGAAAAGTGGGACTTTCTCTG	0.383													58	106					0	0	0.003610	0	0
RETNLB	84666	broad.mit.edu	37	3	108475427	108475427	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:108475427G>A	uc003dxh.2	-	2	234	c.136C>T	c.(136-138)CCC>TCC	p.P46S		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	46					cell proliferation	extracellular region	hormone activity			skin(1)	1						ATAGGAGAGGGACTGTACTCT	0.512													24	46					0	0	0.004656	0	0
TRAT1	50852	broad.mit.edu	37	3	108568052	108568052	+	Missense_Mutation	SNP	G	A	A	rs138442609	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:108568052G>A	uc003dxi.1	+	5	398	c.254G>A	c.(253-255)CGA>CAA	p.R85Q	TRAT1_uc010hpx.1_Missense_Mutation_p.R48Q	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	85	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						ATGAAAGCCCGACCAGAGAAA	0.343													15	49					0	0	0.010504	0	0
PHLDB2	90102	broad.mit.edu	37	3	111632494	111632494	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:111632494C>T	uc010hqa.2	+	3	2075	c.1664C>T	c.(1663-1665)TCC>TTC	p.S555F	PHLDB2_uc003dyc.2_Missense_Mutation_p.S582F|PHLDB2_uc003dyd.2_Missense_Mutation_p.S555F|PHLDB2_uc003dyg.2_Missense_Mutation_p.S555F|PHLDB2_uc003dyh.2_Missense_Mutation_p.S555F|PHLDB2_uc003dyi.2_Missense_Mutation_p.S141F|PHLDB2_uc003dyf.3_Missense_Mutation_p.S555F	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	555						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						CCACCACCATCCTCCACCTTT	0.512													73	171					0	0	0.003610	0	0
CD200R1	131450	broad.mit.edu	37	3	112648221	112648221	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:112648221C>T	uc003dzk.1	-	3	500	c.267G>A	c.(265-267)AAG>AAA	p.K89K	CD200R1_uc003dzj.1_Silent_p.K112K|CD200R1_uc011bhx.1_Silent_p.K67K|CD200R1_uc003dzl.1_Silent_p.K112K|CD200R1_uc003dzm.1_Silent_p.K89K	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	89	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						TTGTTTCTTTCTTGTAGGCTT	0.438													33	54					0	0	0.004289	0	0
CD200R1	131450	broad.mit.edu	37	3	112648329	112648329	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:112648329C>T	uc003dzk.1	-	3	392	c.159G>A	c.(157-159)ATG>ATA	p.M53I	CD200R1_uc003dzj.1_Missense_Mutation_p.M76I|CD200R1_uc011bhx.1_Missense_Mutation_p.M31I|CD200R1_uc003dzl.1_Missense_Mutation_p.M76I|CD200R1_uc003dzm.1_Missense_Mutation_p.M53I	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	53	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						CATTTGTAGCCATCTTTACAG	0.373													21	38					0	0	0.001882	0	0
WDR52	55779	broad.mit.edu	37	3	113084890	113084890	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:113084890G>A	uc003eae.1	-	19	2757	c.2711C>T	c.(2710-2712)CCC>CTC	p.P904L	WDR52_uc003ead.1_Missense_Mutation_p.P85L	NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	904										central_nervous_system(1)	1						ACATACCCTGGGAGATGGAAC	0.289													35	89					0	0	0.002852	0	0
QTRTD1	79691	broad.mit.edu	37	3	113795694	113795694	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:113795694C>T	uc003eay.2	+	7	881	c.651C>T	c.(649-651)TTC>TTT	p.F217F	QTRTD1_uc003eaz.2_Silent_p.F229F|QTRTD1_uc011biq.1_Silent_p.F94F|QTRTD1_uc011bir.1_Silent_p.F111F|QTRTD1_uc003eba.2_Silent_p.F94F	NM_024638	NP_078914	Q9H974	QTRD1_HUMAN	queuine tRNA-ribosyltransferase domain	217					queuosine biosynthetic process	mitochondrion	metal ion binding|queuine tRNA-ribosyltransferase activity			central_nervous_system(1)|skin(1)	2						TGGGTGGCTTCCTTCTGGATG	0.537													30	55					0	0	0.002096	0	0
ZBTB20	26137	broad.mit.edu	37	3	114069795	114069795	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:114069795G>A	uc003ebi.2	-	4	1310	c.1130C>T	c.(1129-1131)TCG>TTG	p.S377L	ZBTB20_uc003ebj.2_Missense_Mutation_p.S304L|ZBTB20_uc010hqp.2_Missense_Mutation_p.S304L|ZBTB20_uc003ebk.2_Missense_Mutation_p.S304L|ZBTB20_uc003ebl.2_Missense_Mutation_p.S304L|ZBTB20_uc003ebm.2_Missense_Mutation_p.S304L|ZBTB20_uc003ebn.2_Missense_Mutation_p.S304L|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	377					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GCTGACGCCCGAGTCGAAGCT	0.647													12	36					0	0	0.001368	0	0
C3orf30	152405	broad.mit.edu	37	3	118867108	118867108	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:118867108G>A	uc003ecb.1	+	2	1520	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.E494K	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	494										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		TATAGTTTATGAAGATCCTTA	0.338													21	44					0	0	0.001882	0	0
FSTL1	11167	broad.mit.edu	37	3	120128466	120128466	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:120128466G>A	uc003eds.2	-	6	550	c.375C>T	c.(373-375)ATC>ATT	p.I125I	FSTL1_uc011bjh.1_Silent_p.I90I	NM_007085	NP_009016	Q12841	FSTL1_HUMAN	follistatin-like 1 precursor	125					BMP signaling pathway	extracellular space	calcium ion binding|heparin binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.189)		GCCACTGGATGATGCGACGTC	0.498													24	51					0	0	0.003954	0	0
HGD	3081	broad.mit.edu	37	3	120352144	120352144	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:120352144G>A	uc003edw.2	-	13	1408	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	HGD_uc003edv.2_Silent_p.I205I	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	346					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		AGTGACCTCGGATGAGTCCCA	0.493													50	148					0	0	0.003610	0	0
HGD	3081	broad.mit.edu	37	3	120393830	120393830	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:120393830G>A	uc003edw.2	-	3	464	c.94C>T	c.(94-96)CCT>TCT	p.P32S		NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	32					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		CAGACCTGAGGATTATTCTGA	0.473													39	98					0	0	0.006230	0	0
GTF2E1	2960	broad.mit.edu	37	3	120495385	120495385	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:120495385A>T	uc003edz.3	+	4	880	c.766A>T	c.(766-768)ATT>TTT	p.I256F		NM_005513	NP_005504	P29083	T2EA_HUMAN	general transcription factor IIE, polypeptide 1,	256					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.159)		GAATGTTGTCATTAACATGGA	0.502													38	76					0	0	0.004289	0	0
FBXO40	51725	broad.mit.edu	37	3	121340651	121340651	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:121340651G>A	uc003eeg.2	+	3	585	c.375G>A	c.(373-375)TTG>TTA	p.L125L		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	125					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AGGAGTGTTTGGACACAGCCC	0.512													22	37					0	0	0.010504	0	0
FBXO40	51725	broad.mit.edu	37	3	121340805	121340805	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:121340805G>A	uc003eeg.2	+	3	739	c.529G>A	c.(529-531)GAT>AAT	p.D177N		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	177					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		GGGTGGAGTGGATATCGGTTT	0.498													13	39					0	0	0.001855	0	0
DTX3L	151636	broad.mit.edu	37	3	122290533	122290533	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:122290533A>C	uc003efk.2	+	5	2251	c.2162A>C	c.(2161-2163)TAT>TCT	p.Y721S	DTX3L_uc010hrj.2_Missense_Mutation_p.Y209S	NM_138287	NP_612144	Q8TDB6	DTX3L_HUMAN	deltex 3-like	721					histone monoubiquitination|response to DNA damage stimulus	cytoplasm|nucleus	histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)	4				GBM - Glioblastoma multiforme(114;0.0459)		AGGTATGGCTATCCTGATCCT	0.363													5	28					0	0	0.000602	0	0
PARP14	54625	broad.mit.edu	37	3	122399887	122399887	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:122399887C>T	uc003efq.3	+	1	216	c.157C>T	c.(157-159)CGC>TGC	p.R53C		NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	53					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		GAGCCCATCCCGCTTCCTGGT	0.657													17	34					0	0	0.003954	0	0
HSPBAP1	79663	broad.mit.edu	37	3	122459599	122459599	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:122459599T>C	uc003efu.1	-	8	1183	c.1060A>G	c.(1060-1062)ATG>GTG	p.M354V	HSPBAP1_uc003eft.1_Missense_Mutation_p.M65V	NM_024610	NP_078886	Q96EW2	HBAP1_HUMAN	Hspb associated protein 1	354						cytoplasm				ovary(1)|lung(1)	2				GBM - Glioblastoma multiforme(114;0.0531)		TCCTTTTTCATGTGCTCTCCA	0.458													62	127					0	0	0.003610	0	0
SEMA5B	54437	broad.mit.edu	37	3	122630379	122630379	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:122630379A>T	uc003efz.1	-	21	3354	c.3050T>A	c.(3049-3051)ATC>AAC	p.I1017N	SEMA5B_uc011bju.1_Missense_Mutation_p.I923N|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.I1017N|SEMA5B_uc003efy.1_5'UTR	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	1017	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GGCTGGCAGGATGACTGCAGG	0.647													6	29					0	0	0.001984	0	0
ADCY5	111	broad.mit.edu	37	3	123022927	123022927	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:123022927G>A	uc003egh.1	-	13	2546	c.2546C>T	c.(2545-2547)GCT>GTT	p.A849V	ADCY5_uc003egg.1_Missense_Mutation_p.A482V|ADCY5_uc003egi.1_Missense_Mutation_p.A408V	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	849	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GTTGACAAAAGCCGCCAGGAA	0.562													12	27					0	0	0.001855	0	0
MYLK	4638	broad.mit.edu	37	3	123456251	123456251	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:123456251G>A	uc003ego.2	-	8	1010	c.728C>T	c.(727-729)TCG>TTG	p.S243L	MYLK_uc011bjw.1_Missense_Mutation_p.S243L|MYLK_uc003egp.2_Missense_Mutation_p.S243L|MYLK_uc003egq.2_Missense_Mutation_p.S243L|MYLK_uc003egr.2_Missense_Mutation_p.S243L|MYLK_uc003egs.2_Missense_Mutation_p.S67L|MYLK_uc010hrs.1_Missense_Mutation_p.S243L	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	243	Ig-like C2-type 2.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		AGCTGACATCGAGGCCTTCCC	0.567													28	71					0	0	0.007291	0	0
KALRN	8997	broad.mit.edu	37	3	124053225	124053225	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:124053225G>A	uc003ehg.2	+	9	1651	c.1524G>A	c.(1522-1524)CTG>CTA	p.L508L	KALRN_uc010hrv.1_Silent_p.L508L|KALRN_uc003ehf.1_Silent_p.L508L|KALRN_uc011bjy.1_Silent_p.L508L	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	508					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ACCAGGTGCTGGACGTGGTGC	0.627													50	71					0	0	0.003610	0	0
KALRN	8997	broad.mit.edu	37	3	124281768	124281768	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:124281768G>A	uc003ehg.2	+	34	5135	c.5008G>A	c.(5008-5010)GGG>AGG	p.G1670R	KALRN_uc003ehi.2_Missense_Mutation_p.G43R	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1670	SH3 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CATCCAGGTGGGGCAGACGGT	0.637													11	18					0	0	0.000978	0	0
KALRN	8997	broad.mit.edu	37	3	124390556	124390556	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:124390556G>A	uc003ehg.2	+	48	6877	c.6750G>A	c.(6748-6750)GTG>GTA	p.V2250V	KALRN_uc003ehi.2_Silent_p.V591V|KALRN_uc003ehk.2_Silent_p.V553V|KALRN_uc011bjz.1_Silent_p.V342V	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2249					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GCACAGCTGTGATGAGGTCTC	0.557													50	87					0	0	0.003610	0	0
EEFSEC	60678	broad.mit.edu	37	3	127965788	127965788	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:127965788C>T	uc003eki.2	+	2	464	c.426C>T	c.(424-426)GTC>GTT	p.V142V	EEFSEC_uc003ekj.2_Silent_p.V142V	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	142						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						AGAAGCTGGTCGTGGTGCTGA	0.483													70	153					0	0	0.003610	0	0
PLXND1	23129	broad.mit.edu	37	3	129281741	129281741	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:129281741C>G	uc003emx.2	-	27	4814	c.4714G>C	c.(4714-4716)GTG>CTG	p.V1572L	PLXND1_uc011blb.1_Missense_Mutation_p.V240L	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1572	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						ATGGCCCGCACGCTCAGCGAG	0.592													8	25					0	0	0.004482	0	0
COL6A6	131873	broad.mit.edu	37	3	130282241	130282241	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:130282241C>T	uc010htl.2	+	2	425	c.394C>T	c.(394-396)CCC>TCC	p.P132S		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	132	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GAAACAGTTTCCCCCAATTCT	0.502													12	28					0	0	0.001368	0	0
PIK3R4	30849	broad.mit.edu	37	3	130452892	130452892	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:130452892G>A	uc003enj.2	-	4	1531	c.950C>T	c.(949-951)CCT>CTT	p.P317L		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	317	Protein kinase.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						AAATATTTCAGGAAAGGCATT	0.423													34	68					0	0	0.002445	0	0
ACAD11	84129	broad.mit.edu	37	3	132277877	132277877	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:132277877G>A	uc003eov.3	-	20	2661	c.2281C>T	c.(2281-2283)CTT>TTT	p.L761F		NM_032169	NP_115545	Q709F0	ACD11_HUMAN	putative acyl-CoA dehydrogenase	761						peroxisome	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|transferase activity, transferring phosphorus-containing groups			ovary(1)	1						ATTGCTGAAAGATGAACTTCG	0.478													23	43					0	0	0.006320	0	0
TF	7018	broad.mit.edu	37	3	133495981	133495981	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:133495981C>G	uc003epu.1	+	21	3689	c.1961C>G	c.(1960-1962)ACA>AGA	p.T654R	TF_uc011blt.1_Missense_Mutation_p.T527R|TF_uc003epw.1_Missense_Mutation_p.T93R|TF_uc003epv.1_Missense_Mutation_p.T654R	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	654	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	AGAGATGACACAGTATGTTTG	0.428													23	34					0	0	0.002780	0	0
TMEM22	80723	broad.mit.edu	37	3	136573917	136573917	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:136573917C>T	uc003erf.3	+	2	829	c.615C>T	c.(613-615)TTC>TTT	p.F205F	TMEM22_uc003erg.3_Silent_p.F205F|TMEM22_uc010hub.2_Silent_p.F205F	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	205	DUF6 1.|Helical; (Potential).					Golgi apparatus|integral to membrane				ovary(1)	1						CTACAGTCTTCAGTGCCATTT	0.408													23	60					0	0	0.002299	0	0
IL20RB	53833	broad.mit.edu	37	3	136677029	136677029	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:136677029C>T	uc003eri.1	+	1	323	c.74C>T	c.(73-75)CCA>CTA	p.P25L	IL20RB_uc003erj.1_RNA	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	25						integral to membrane	receptor activity			ovary(1)	1						GCATTGATTCCATGTTTGCTC	0.388													17	59					0	0	0.007413	0	0
CEP70	80321	broad.mit.edu	37	3	138224239	138224239	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:138224239T>A	uc003esl.2	-	13	1317	c.1119A>T	c.(1117-1119)AAA>AAT	p.K373N	CEP70_uc011bmk.1_Missense_Mutation_p.K353N|CEP70_uc011bml.1_Missense_Mutation_p.K355N|CEP70_uc011bmm.1_Missense_Mutation_p.K221N|CEP70_uc003esm.2_Missense_Mutation_p.K373N	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	373					G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						GGACTCCCCCTTTGGTCTGTT	0.333													141	315					0	0	0.003610	0	0
PRR23B	389151	broad.mit.edu	37	3	138738846	138738846	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:138738846G>A	uc003esy.1	-	1	923	c.658C>T	c.(658-660)CGC>TGC	p.R220C		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	220	Pro-rich.									breast(1)	1						TCCAGAAGGCGGAATTCCAGG	0.662													15	35					0	0	0.003163	0	0
PRR23B	389151	broad.mit.edu	37	3	138739050	138739050	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:138739050C>T	uc003esy.1	-	1	719	c.454G>A	c.(454-456)GAA>AAA	p.E152K		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	152										breast(1)	1						TAGGCCTCTTCCTGGGCGGCG	0.647													22	51					0	0	0.002299	0	0
NMNAT3	349565	broad.mit.edu	37	3	139297865	139297865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:139297865G>A	uc003etj.2	-	2	182	c.142C>T	c.(142-144)CCT>TCT	p.P48S	NMNAT3_uc003etk.2_Missense_Mutation_p.P11S|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Intron	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	48					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						TCGTTGACAGGAGAGATGATA	0.557													8	24					0	0	0.003080	0	0
GRK7	131890	broad.mit.edu	37	3	141497718	141497718	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:141497718G>A	uc011bnd.1	+	1	676	c.592G>A	c.(592-594)GGG>AGG	p.G198R		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	198	ATP (By similarity).|Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CAGAGTGCTGGGGAAAGGTGG	0.473													29	72					0	0	0.003271	0	0
ATR	545	broad.mit.edu	37	3	142272230	142272230	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:142272230C>T	uc003eux.3	-	13	2766	c.2644G>A	c.(2644-2646)GGA>AGA	p.G882R		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	882					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						ACCAAATCTCCTTTTGCGGCC	0.299								Other_conserved_DNA_damage_response_genes					13	28					0	0	0.003163	0	0
ATR	545	broad.mit.edu	37	3	142278242	142278242	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:142278242G>A	uc003eux.3	-	7	1705	c.1583C>T	c.(1582-1584)CCT>CTT	p.P528L		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	528					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CACTACAGAAGGTTTCTTCTT	0.348								Other_conserved_DNA_damage_response_genes					15	41					0	0	0.004007	0	0
AGTR1	185	broad.mit.edu	37	3	148459810	148459810	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:148459810C>T	uc003ewg.2	+	4	1434	c.988C>T	c.(988-990)CTT>TTT	p.L330F	AGTR1_uc003ewh.2_Missense_Mutation_p.L330F|AGTR1_uc003ewi.2_Missense_Mutation_p.L330F|AGTR1_uc003ewj.2_Missense_Mutation_p.L330F|AGTR1_uc003ewk.2_Missense_Mutation_p.L330F	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	330	Cytoplasmic (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	CCACTCAAACCTTTCAACAAA	0.408													15	24					0	0	0.003163	0	0
CPA3	1359	broad.mit.edu	37	3	148596449	148596449	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:148596449G>A	uc003ewm.2	+	5	440	c.388G>A	c.(388-390)GAA>AAA	p.E130K		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	130					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			GGCTTGGACTGAAAAGATGAT	0.284													41	102					0	0	0.003610	0	0
CPA3	1359	broad.mit.edu	37	3	148600313	148600313	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:148600313C>T	uc003ewm.2	+	8	761	c.709C>T	c.(709-711)CGT>TGT	p.R237C		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	237					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			GAGAAAAAATCGTTCCAAGAA	0.383													7	19					0	0	0.001984	0	0
HPS3	84343	broad.mit.edu	37	3	148884855	148884855	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:148884855C>T	uc003ewu.1	+	15	2764	c.2624C>T	c.(2623-2625)TCC>TTC	p.S875F	CP_uc011bnr.1_Intron|HPS3_uc011bnq.1_Missense_Mutation_p.S710F|HPS3_uc003ewv.1_RNA	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	875						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			GACATAGCTTCCATTATTCCG	0.403									Hermansky-Pudlak_syndrome				42	124					0	0	0.003214	0	0
CP	1356	broad.mit.edu	37	3	148897413	148897413	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:148897413C>T	uc003ewy.3	-	15	2844	c.2591G>A	c.(2590-2592)AGA>AAA	p.R864K	CP_uc011bnr.1_RNA|CP_uc003eww.3_Missense_Mutation_p.R16K|CP_uc003ewx.3_Missense_Mutation_p.R645K|CP_uc003ewz.2_Missense_Mutation_p.R864K	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	864	Plastocyanin-like 5.|F5/8 type A 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	AGCTCCAGATCTTTCTGGGAT	0.328													17	24					0	0	0.008871	0	0
EIF2A	83939	broad.mit.edu	37	3	150264610	150264610	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:150264610C>T	uc003eya.2	+	1	37	c.21C>T	c.(19-21)CTC>CTT	p.L7L	SERP1_uc003exy.2_5'Flank|SERP1_uc003exz.2_RNA|EIF2A_uc003eyb.2_5'UTR|EIF2A_uc003eyc.2_5'UTR|EIF2A_uc011bnv.1_Silent_p.L7L|EIF2A_uc011bnw.1_Silent_p.L7L	NM_032025	NP_114414	Q9BY44	EIF2A_HUMAN	eukaryotic translation initiation factor 2A	7				L -> F (in Ref. 4; AAQ13612).	regulation of translation|ribosome assembly	eukaryotic translation initiation factor 2 complex	ribosome binding|translation initiation factor activity|tRNA binding				0		Melanoma(1037;0.0575)	LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			CCACGCCGCTCTTGACAGGTG	0.562													34	70					0	0	0.005524	0	0
IGSF10	285313	broad.mit.edu	37	3	151176400	151176400	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:151176400C>G	uc011bod.1	-	1	98	c.98G>C	c.(97-99)TGT>TCT	p.C33S		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	33	LRRNT.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATAACAGGCACAGCGGCGAGG	0.557													13	37					0	0	0.003163	0	0
AADAC	13	broad.mit.edu	37	3	151531955	151531955	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:151531955G>A	uc003eze.2	+	1	95	c.5G>A	c.(4-6)GGA>GAA	p.G2E		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	2	Cytoplasmic (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TTCACCATGGGAAGAAAATCG	0.433													33	74					0	0	0.006230	0	0
TMEM14E	645843	broad.mit.edu	37	3	152058585	152058585	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:152058585G>T	uc010hvo.2	-	1	195	c.109C>A	c.(109-111)CAG>AAG	p.Q37K	MBNL1_uc003ezh.2_Intron|MBNL1_uc003ezi.2_Intron|MBNL1_uc003ezj.2_Intron|MBNL1_uc003ezm.2_Intron|MBNL1_uc003ezl.2_Intron|MBNL1_uc003ezp.2_Intron|MBNL1_uc003ezn.2_Intron|MBNL1_uc003ezo.2_Intron	NM_001123228	NP_001116700	Q6UXP3	TM14E_HUMAN	transmembrane protein 14E	37						integral to membrane					0						GAAGGGGACTGGACAGAACCT	0.502													21	44					1.37657e-19	1.5399e-19	0.001882	1	0
PLCH1	23007	broad.mit.edu	37	3	155199879	155199880	+	Missense_Mutation	DNP	GG	AA	AA	rs143608009		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:155199879_155199880GG>AA	uc011bok.1	-	23	4236_4237	c.3959_3960CC>TT	c.(3958-3960)ACC>ATT	p.T1320I	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.T1282I	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1320					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CTTCTCCCTTGGTAGGACTTTT	0.5													38	93					0	0	0.004672	0	0
PLCH1	23007	broad.mit.edu	37	3	155200813	155200813	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:155200813C>T	uc011bok.1	-	23	3303	c.3026G>A	c.(3025-3027)GGG>GAG	p.G1009E	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.G971E	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1009					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			ACTTGCTTTCCCTTTTCTTCT	0.393													27	73					0	0	0.003954	0	0
PLCH1	23007	broad.mit.edu	37	3	155222400	155222400	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:155222400C>T	uc011bok.1	-	12	1889	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K	PLCH1_uc011boj.1_Missense_Mutation_p.E538K|PLCH1_uc011bol.1_Missense_Mutation_p.E520K	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	538					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTTCCACTTTCCTTTACATCT	0.343													20	45					0	0	0.002299	0	0
ZBBX	79740	broad.mit.edu	37	3	166960362	166960362	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:166960362A>T	uc003fep.2	-	20	2530	c.2207T>A	c.(2206-2208)ATA>AAA	p.I736K	ZBBX_uc011bpc.1_Missense_Mutation_p.I775K|ZBBX_uc003feq.2_Missense_Mutation_p.I707K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	736						intracellular	zinc ion binding			ovary(2)	2						AATCTGACTTATATTCAGTGA	0.368													15	36					0	0	0.004007	0	0
ZBBX	79740	broad.mit.edu	37	3	166960382	166960382	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:166960382G>A	uc003fep.2	-	20	2510	c.2187C>T	c.(2185-2187)TTC>TTT	p.F729F	ZBBX_uc011bpc.1_Silent_p.F768F|ZBBX_uc003feq.2_Silent_p.F700F	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	729						intracellular	zinc ion binding			ovary(2)	2						ATTGGCTGCTGAAATCTGGGA	0.368													16	36					0	0	0.007413	0	0
WDR49	151790	broad.mit.edu	37	3	167196684	167196684	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:167196684C>T	uc003fev.1	-	15	2382	c.2076G>A	c.(2074-2076)GTG>GTA	p.V692V	WDR49_uc003feu.1_Silent_p.V517V|WDR49_uc011bpd.1_Silent_p.V657V|WDR49_uc003few.1_3'UTR	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	692										large_intestine(1)|ovary(1)|skin(1)	3						TATTTTTCTTCACTTCACAAC	0.318													18	27					0	0	0.004990	0	0
MECOM	2122	broad.mit.edu	37	3	168845645	168845645	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:168845645G>A	uc003ffi.3	-	4	522	c.253C>T	c.(253-255)CCT>TCT	p.P85S	MECOM_uc010hwk.1_Missense_Mutation_p.P108S|MECOM_uc003ffj.3_Missense_Mutation_p.P149S|MECOM_uc011bpi.1_Missense_Mutation_p.P85S|MECOM_uc003ffn.3_Missense_Mutation_p.P85S|MECOM_uc003ffk.2_Missense_Mutation_p.P85S|MECOM_uc003ffl.2_Missense_Mutation_p.P245S|MECOM_uc011bpj.1_Missense_Mutation_p.P273S|MECOM_uc011bpk.1_Missense_Mutation_p.P75S|MECOM_uc010hwn.2_Missense_Mutation_p.P273S|MECOM_uc003ffm.1_Missense_Mutation_p.P149S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	85	Interaction with MAPK9, SMAD3 and probably SUV39H1.|C2H2-type 2.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TGCAAATCAGGAAAAACTTGG	0.383													42	92					0	0	0.003610	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169664489	169664489	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:169664489C>T	uc011bpp.1	-	2		c.3314G>A				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						CATACTTTTTCCTCTGCAAGG	0.522													15	36					0	0	0.003163	0	0
PHC3	80012	broad.mit.edu	37	3	169835174	169835174	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:169835174G>A	uc010hws.1	-	10	2061	c.1997C>T	c.(1996-1998)CCA>CTA	p.P666L	PHC3_uc003fgl.2_Missense_Mutation_p.P678L|PHC3_uc011bpq.1_Missense_Mutation_p.P625L	NM_024947	NP_079223	Q8NDX5	PHC3_HUMAN	polyhomeotic like 3	666	Pro-rich.				multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			AAGTAACAATGGAGGTGGTGG	0.433													16	34					0	0	0.003163	0	0
TNIK	23043	broad.mit.edu	37	3	170895115	170895115	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:170895115G>A	uc003fhh.2	-	8	1039	c.694C>T	c.(694-696)CCT>TCT	p.P232S	TNIK_uc003fhi.2_Missense_Mutation_p.P232S|TNIK_uc003fhj.2_Missense_Mutation_p.P232S|TNIK_uc003fhk.2_Missense_Mutation_p.P232S|TNIK_uc003fhl.2_Missense_Mutation_p.P232S|TNIK_uc003fhm.2_Missense_Mutation_p.P232S|TNIK_uc003fhn.2_Missense_Mutation_p.P232S|TNIK_uc003fho.2_Missense_Mutation_p.P232S	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	232	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GGGTACTTACGGGGAGCACCT	0.498													5	9					0	0	0.000602	0	0
SPATA16	83893	broad.mit.edu	37	3	172835378	172835378	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:172835378C>T	uc003fin.3	-	2	302	c.144G>A	c.(142-144)AAG>AAA	p.K48K		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	48					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CACAGTTTTTCTTAATCTCTT	0.383													73	151					0	0	0.003610	0	0
NAALADL2	254827	broad.mit.edu	37	3	174815070	174815070	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:174815070G>A	uc003fit.2	+	2	621	c.534G>A	c.(532-534)AAG>AAA	p.K178K	NAALADL2_uc003fiu.1_Silent_p.K171K	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	178	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		AAGATATTAAGAAGTCTTTCA	0.378													34	70					0	0	0.004878	0	0
CCDC39	339829	broad.mit.edu	37	3	180359902	180359902	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:180359902G>A	uc010hxe.2	-	13	1868	c.1753C>T	c.(1753-1755)CTA>TTA	p.L585L	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	585	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			CTTTTTTCTAGGGAAAGAACT	0.353													16	48					0	0	0.003163	0	0
DCUN1D1	54165	broad.mit.edu	37	3	182683508	182683508	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:182683508G>A	uc003fld.1	-	2	86	c.37C>T	c.(37-39)CGT>TGT	p.R13C	DCUN1D1_uc011bqn.1_5'UTR	NM_020640	NP_065691	Q96GG9	DCNL1_HUMAN	RP42 homolog	13	UBA-like.					ubiquitin ligase complex	protein binding			ovary(1)	1	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;2.54e-44)|Epithelial(37;4.71e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			ATAAACTGACGAACTTTATCC	0.308													23	51					0	0	0.002299	0	0
YEATS2	55689	broad.mit.edu	37	3	183480001	183480001	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:183480001C>T	uc003fly.2	+	15	2076	c.1881C>T	c.(1879-1881)TCC>TCT	p.S627S		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	627					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TAGCTGTGTCCCCTCAAAAAC	0.537													28	48					0	0	0.004656	0	0
HTR3C	170572	broad.mit.edu	37	3	183773112	183773112	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:183773112C>T	uc003fmk.2	+	3	281	c.247C>T	c.(247-249)CAG>TAG	p.Q83*		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	83	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			TGCACAGCTCCAGCTGCTGAC	0.408													22	33					0	0	0.004656	0	0
ALG3	10195	broad.mit.edu	37	3	183961673	183961673	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:183961673G>A	uc003fne.2	-	6	869	c.838C>T	c.(838-840)CCA>TCA	p.P280S	ALG3_uc011brc.1_Missense_Mutation_p.P245S|ALG3_uc011brd.1_Missense_Mutation_p.P224S|ALG3_uc011bre.1_Missense_Mutation_p.P232S|ALG3_uc003fnf.1_Missense_Mutation_p.P240S	NM_005787	NP_005778	Q92685	ALG3_HUMAN	alpha-1,3-mannosyltransferase ALG3 isoform a	280					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	alpha-1,3-mannosyltransferase activity				0	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGCGCCTCTGGGAGGAAGCGC	0.627													5	33					0	0	0.000602	0	0
ECE2	9718	broad.mit.edu	37	3	184001643	184001643	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:184001643G>A	uc003fni.3	+	8	1279	c.1241G>A	c.(1240-1242)AGG>AAG	p.R414K	ECE2_uc011brh.1_Missense_Mutation_p.R267K|ECE2_uc003fnl.3_Missense_Mutation_p.R342K|ECE2_uc003fnm.3_Missense_Mutation_p.R296K|ECE2_uc003fnk.3_Missense_Mutation_p.R267K|ECE2_uc011bri.1_Missense_Mutation_p.R329K|ECE2_uc010hxv.2_Missense_Mutation_p.R58K	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	414	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ACCTCCACGAGGGAGCAGATG	0.612													20	26					0	0	0.007413	0	0
ECE2	9718	broad.mit.edu	37	3	184008046	184008046	+	Missense_Mutation	SNP	G	A	A	rs142884324	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:184008046G>A	uc003fni.3	+	14	1947	c.1909G>A	c.(1909-1911)GAA>AAA	p.E637K	ECE2_uc011brh.1_Missense_Mutation_p.E490K|ECE2_uc003fnl.3_Missense_Mutation_p.E565K|ECE2_uc003fnm.3_Missense_Mutation_p.E519K|ECE2_uc003fnk.3_Missense_Mutation_p.E490K|ECE2_uc011bri.1_Missense_Mutation_p.E552K|ECE2_uc010hxv.2_Missense_Mutation_p.E281K	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	637	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCCACAGTACGAAATTTCTGA	0.383													7	10					0	0	0.003080	0	0
VPS8	23355	broad.mit.edu	37	3	184689489	184689489	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:184689489C>T	uc003fpb.1	+	39	3534	c.3363C>T	c.(3361-3363)ACC>ACT	p.T1121T	VPS8_uc010hyd.1_Silent_p.T1031T|VPS8_uc010hye.1_Silent_p.T550T	NM_015303	NP_056118	Q8N3P4	VPS8_HUMAN	vacuolar protein sorting 8 homolog isoform b	1123							zinc ion binding			ovary(1)	1	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			TGGTGGAGACCATTGCTCTTT	0.353													11	21					0	0	0.002450	0	0
DGKG	1608	broad.mit.edu	37	3	185882732	185882732	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:185882732T>G	uc003fqa.2	-	23	2708	c.2171A>C	c.(2170-2172)AAG>ACG	p.K724T	DGKG_uc003fqb.2_Missense_Mutation_p.K685T|DGKG_uc003fqc.2_Missense_Mutation_p.K699T|DGKG_uc011brx.1_Missense_Mutation_p.K665T	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	724					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GCCTGCACTCTTCAGGCCGGT	0.587													18	31					0	0	0.007413	0	0
RFC4	5984	broad.mit.edu	37	3	186515359	186515359	+	Silent	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:186515359T>A	uc003fqz.2	-	4	478	c.255A>T	c.(253-255)ACA>ACT	p.T85T	RFC4_uc011bsc.1_Silent_p.T85T|RFC4_uc011bsd.1_Silent_p.T85T	NM_002916	NP_002907	P35249	RFC4_HUMAN	replication factor C 4	85	ATP (Potential).				cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|large_intestine(1)	5	all_cancers(143;2.92e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)	GBM - Glioblastoma multiforme(93;0.0739)		AAATAGTGGATGTTTTTCCAG	0.328													24	57					0	0	0.005443	0	0
TP63	8626	broad.mit.edu	37	3	189582116	189582116	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:189582116C>T	uc003fry.2	+	5	764	c.675C>T	c.(673-675)ATC>ATT	p.I225I	TP63_uc003frx.2_Silent_p.I225I|TP63_uc003frz.2_Silent_p.I225I|TP63_uc010hzc.1_Silent_p.I225I|TP63_uc003fsa.2_Silent_p.I131I|TP63_uc003fsb.2_Silent_p.I131I|TP63_uc003fsc.2_Silent_p.I131I|TP63_uc003fsd.2_Silent_p.I131I|TP63_uc010hzd.1_Silent_p.I46I|TP63_uc003fse.1_Silent_p.I106I	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	225					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GAGCTGTTATCCGCGCCATGC	0.527									Hay-Wells_syndrome	HNSCC(45;0.13)			38	93					0	0	0.006230	0	0
TP63	8626	broad.mit.edu	37	3	189612073	189612073	+	Missense_Mutation	SNP	G	A	A	rs142762485		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:189612073G>A	uc003fry.2	+	14	1914	c.1825G>A	c.(1825-1827)GAA>AAA	p.E609K	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Missense_Mutation_p.E515K|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Missense_Mutation_p.E430K	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	609					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.E609K(1)		skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GCAGCTCCACGAATTCTCCTC	0.567									Hay-Wells_syndrome	HNSCC(45;0.13)			23	57					0	0	0.003330	0	0
UTS2D	257313	broad.mit.edu	37	3	190994611	190994611	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:190994611C>T	uc003fsu.2	-	7	1012	c.225G>A	c.(223-225)CTG>CTA	p.L75L		NM_198152	NP_937795	Q765I0	UTS2B_HUMAN	urotensin 2 domain containing precursor	75						extracellular region	hormone activity				0	all_cancers(143;1.77e-09)|Ovarian(172;0.103)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000214)		TAAGTTCTTCCAGTTTGTTAG	0.294													18	24					0	0	0.010504	0	0
CPN2	1370	broad.mit.edu	37	3	194063251	194063251	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:194063251A>G	uc003fts.2	-	2	271	c.181T>C	c.(181-183)TTC>CTC	p.F61L		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	61					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		AATGTGGTGAACGAGGTCTCC	0.532													25	74					0	0	0.007291	0	0
MUC4	4585	broad.mit.edu	37	3	195517627	195517627	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:195517627C>T	uc011bto.1	-	2	1284	c.824G>A	c.(823-825)GGA>GAA	p.G275E	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.G157E	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	280					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CCCTGGGTTTCCAAGAGTGGA	0.473													26	41					0	0	0.005443	0	0
LMLN	89782	broad.mit.edu	37	3	197723072	197723072	+	Silent	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:197723072T>C	uc011buo.1	+	10	1096	c.1074T>C	c.(1072-1074)TGT>TGC	p.C358C	LMLN_uc003fyt.2_Silent_p.C306C|LMLN_uc010iar.2_Silent_p.C358C|LMLN_uc010ias.2_Silent_p.C306C|LMLN_uc003fyu.2_Silent_p.C118C	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	358					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		ATTTTGATTGTCCAGTTCTAG	0.363													14	33					0	0	0.002450	0	0
PIGG	54872	broad.mit.edu	37	4	520864	520864	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:520864C>T	uc003gak.3	+	10	2242	c.2106C>T	c.(2104-2106)GCC>GCT	p.A702A	PIGG_uc003gaj.3_Silent_p.A694A|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Silent_p.A569A|PIGG_uc003gal.3_Silent_p.A613A	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	702	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						TCCTGGCTGCCCTCTCCCTCC	0.567													5	19					0	0	0.001168	0	0
PDE6B	5158	broad.mit.edu	37	4	650789	650789	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:650789G>A	uc003gap.2	+	9	1287	c.1234G>A	c.(1234-1236)GAA>AAA	p.E412K	PDE6B_uc003gao.3_Missense_Mutation_p.E412K|PDE6B_uc011buy.1_Missense_Mutation_p.E133K|uc003gaq.1_5'Flank	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	412	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GCCCTTTGACGAACAGGACGA	0.597													17	32					0	0	0.008871	0	0
MFSD7	84179	broad.mit.edu	37	4	680023	680023	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:680023C>T	uc003gay.2	-	3	420	c.363G>A	c.(361-363)GGG>GGA	p.G121G	MFSD7_uc003gaw.2_5'Flank|MFSD7_uc003gax.2_Silent_p.G121G|MFSD7_uc003gaz.2_Intron|MFSD7_uc003gba.2_Intron|MFSD7_uc003gbb.1_Silent_p.G57G	NM_032219	NP_115595	Q6UXD7	MFSD7_HUMAN	major facilitator superfamily domain containing	121					transmembrane transport	integral to membrane					0						GGTTTTGGGTCCCAACAACCA	0.527													12	26					0	0	0.001368	0	0
NOP14	8602	broad.mit.edu	37	4	2955286	2955286	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:2955286G>A	uc003ggj.1	-	5	771	c.699C>T	c.(697-699)TCC>TCT	p.S233S	C4orf10_uc003ggi.1_Intron|NOP14_uc010icp.2_5'UTR|NOP14_uc003ggk.3_Silent_p.S233S|NOP14_uc003ggl.2_Silent_p.S233S|NOP14_uc010icq.1_RNA	NM_003703	NP_003694	P78316	NOP14_HUMAN	probable nucleolar complex protein 14	233					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	mitochondrion|Noc4p-Nop14p complex|small-subunit processome	snoRNA binding			pancreas(1)	1						GAGTTTTGTGGGACAGGAGAG	0.483													76	116					0	0	0.003610	0	0
HTT	3064	broad.mit.edu	37	4	3109019	3109019	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:3109019C>T	uc011bvq.1	+	7	767	c.622C>T	c.(622-624)CTG>TTG	p.L208L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	206	HEAT 1.				establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CAGGCCTTACCTGGTGAACCT	0.473													11	51					0	0	0.001368	0	0
RGS12	6002	broad.mit.edu	37	4	3319336	3319336	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:3319336C>T	uc003ggw.2	+	2	2343	c.1439C>T	c.(1438-1440)CCC>CTC	p.P480L	RGS12_uc003ggu.2_Missense_Mutation_p.P480L|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.P480L|RGS12_uc003ggx.1_Missense_Mutation_p.P480L	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	480						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TGTCCGGACCCCGAAGGGAGC	0.682													18	43					0	0	0.006122	0	0
DOK7	285489	broad.mit.edu	37	4	3478185	3478185	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:3478185G>A	uc003ghd.2	+	4	518	c.448G>A	c.(448-450)GGG>AGG	p.G150R	DOK7_uc003ghe.2_Silent_p.R15R	NM_173660	NP_775931	Q18PE1	DOK7_HUMAN	downstream of tyrosine kinase 7 isoform 1	150	IRS-type PTB.				positive regulation of protein tyrosine kinase activity	cell junction|synapse	insulin receptor binding|protein kinase binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GGCTGTCACGGGGCAGTGGAA	0.627													13	66					0	0	0.003163	0	0
C4orf50	389197	broad.mit.edu	37	4	5961233	5961233	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:5961233G>A	uc003git.1	-	7	790	c.700C>T	c.(700-702)CAA>TAA	p.Q234*		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	234										pancreas(2)|breast(1)	3						TTATCGACTTGGAGGGCAGGA	0.567													12	68					0	0	0.001368	0	0
WFS1	7466	broad.mit.edu	37	4	6302781	6302781	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:6302781C>T	uc003giy.2	+	8	1425	c.1259C>T	c.(1258-1260)CCC>CTC	p.P420L	WFS1_uc003gix.2_Missense_Mutation_p.P420L|WFS1_uc003giz.2_Missense_Mutation_p.P238L	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	420	Helical; (Potential).				endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		TTCTCCTTCCCCATCGCCAGC	0.592													124	226					0	0	0.003610	0	0
SORCS2	57537	broad.mit.edu	37	4	7716918	7716918	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:7716918G>A	uc003gkb.3	+	17	2132	c.2132G>A	c.(2131-2133)GGA>GAA	p.G711E	SORCS2_uc011bwi.1_Missense_Mutation_p.G539E	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	711	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						AGCGACTACGGATTTGAGCGC	0.597													38	58					0	0	0.002522	0	0
C4orf23	152992	broad.mit.edu	37	4	8469678	8469678	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:8469678C>T	uc003glg.1	+	9	1033	c.845C>T	c.(844-846)TCC>TTC	p.S282F	C4orf23_uc003glf.1_Missense_Mutation_p.S270F|C4orf23_uc003glh.1_Missense_Mutation_p.S119F	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	511					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						TACCCTTCCTCCAGAGAAGCT	0.507													28	30					0	0	0.002445	0	0
CLNK	116449	broad.mit.edu	37	4	10509591	10509591	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:10509591C>T	uc003gmo.3	-	17	1113	c.976G>A	c.(976-978)GAG>AAG	p.E326K		NM_052964	NP_443196	Q7Z7G1	CLNK_HUMAN	mast cell immunoreceptor signal transducer	326	SH2.				immune response|intracellular signal transduction	intracellular	SH3/SH2 adaptor activity			ovary(1)	1						ACCTTGTTCTCCTTCATGAAT	0.423													4	9					0	0	0.009096	0	0
HS3ST1	9957	broad.mit.edu	37	4	11401009	11401009	+	Silent	SNP	G	A	A	rs139094851		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:11401009G>A	uc003gmq.2	-	2	944	c.621C>T	c.(619-621)TTC>TTT	p.F207F		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	207						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity	p.F207F(1)		skin(1)	1						GGCGCAGCGGGAAAAAGCGCA	0.597													15	19					0	0	0.003163	0	0
FBXL5	26234	broad.mit.edu	37	4	15640184	15640184	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:15640184G>A	uc003goc.1	-	4	633	c.530C>T	c.(529-531)GCT>GTT	p.A177V	FBXL5_uc010idw.1_Missense_Mutation_p.A90V|FBXL5_uc003gob.1_Missense_Mutation_p.A51V|FBXL5_uc010idx.1_Missense_Mutation_p.A177V|FBXL5_uc003god.1_Missense_Mutation_p.A160V|FBXL5_uc010idy.1_Missense_Mutation_p.A177V	NM_012161	NP_036293	Q9UKA1	FBXL5_HUMAN	F-box and leucine-rich repeat protein 5 isoform	177					iron ion homeostasis|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|SCF ubiquitin ligase complex	iron ion binding|protein binding|ubiquitin-protein ligase activity				0						TCGCTCTTCAGCATGATTCCA	0.343													3	26					0	0	0.004672	0	0
FGFBP1	9982	broad.mit.edu	37	4	15937826	15937826	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:15937826G>A	uc003gom.2	-	2	548	c.430C>T	c.(430-432)CCA>TCA	p.P144S		NM_005130	NP_005121	Q14512	FGFP1_HUMAN	fibroblast growth factor binding protein 1	144					cell-cell signaling|negative regulation of cell proliferation|signal transduction	extracellular space|plasma membrane	heparin binding				0						CTGGATTCTGGAAAATCCTTT	0.463													23	36					0	0	0.003330	0	0
DCAF16	54876	broad.mit.edu	37	4	17805434	17805434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:17805434G>A	uc003gpn.2	-	3	1392	c.331C>T	c.(331-333)CCT>TCT	p.P111S	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	111						CUL4 RING ubiquitin ligase complex				ovary(1)	1						GGCCATTCAGGAATTGGTTCC	0.498													53	104					0	0	0.003610	0	0
SLIT2	9353	broad.mit.edu	37	4	20618763	20618763	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:20618763G>A	uc003gpr.1	+	35	4282	c.4078G>A	c.(4078-4080)GAA>AAA	p.E1360K	SLIT2_uc003gps.1_Missense_Mutation_p.E1352K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1360	EGF-like 7.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CGAGTGCCAGGAAGGATGGAT	0.572													22	37					0	0	0.003330	0	0
SEPSECS	51091	broad.mit.edu	37	4	25125674	25125674	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:25125674C>T	uc003grg.2	-	11	1598	c.1385G>A	c.(1384-1386)AGA>AAA	p.R462K	SEPSECS_uc003gri.2_Missense_Mutation_p.R461K|SEPSECS_uc003grh.2_Missense_Mutation_p.R383K	NM_153825	NP_722547	Q9HD40	SPCS_HUMAN	Sep (O-phosphoserine) tRNA:Sec (selenocysteine)	462					selenocysteine incorporation	cytoplasm|nucleus	pyridoxal phosphate binding|transferase activity, transferring selenium-containing groups|tRNA binding				0		Breast(46;0.173)			Pyridoxal Phosphate(DB00114)	TCGTTCTTTTCTTACTGCCTT	0.383													13	49					0	0	0.002450	0	0
SLC34A2	10568	broad.mit.edu	37	4	25675988	25675988	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:25675988C>T	uc003grr.2	+	11	1368	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I	SLC34A2_uc003grs.2_Silent_p.I428I|SLC34A2_uc010iev.2_Silent_p.I428I	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	429	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TGACCTTCATCGTACAGAGCA	0.562													12	87					0	0	0.001855	0	0
ARAP2	116984	broad.mit.edu	37	4	36168569	36168569	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:36168569G>A	uc003gsq.1	-	10	2296	c.1958C>T	c.(1957-1959)CCC>CTC	p.P653L	ARAP2_uc003gsr.1_Missense_Mutation_p.P653L	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	653	PH 2.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						ACTCCTGTAGGGAGTGATTAT	0.358													11	42					0	0	0.000978	0	0
LOC401127	401127	broad.mit.edu	37	4	39482269	39482269	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:39482269C>T	uc011byn.1	+	1		c.395C>T			LOC401127_uc011byo.1_RNA	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						GAAATTCAGCCCGAATGGAGA	0.493													29	28					0	0	0.002445	0	0
LOC401127	401127	broad.mit.edu	37	4	39483090	39483090	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:39483090C>T	uc011byn.1	+	1		c.1216C>T			LOC401127_uc011byo.1_RNA	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						CTGTTAAGTCCCTTTGCTCCC	0.507													3	21					0	0	0.004672	0	0
N4BP2	55728	broad.mit.edu	37	4	40104726	40104726	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:40104726C>T	uc003guy.3	+	4	1599	c.1261C>T	c.(1261-1263)CAA>TAA	p.Q421*	N4BP2_uc010ifq.2_Nonsense_Mutation_p.Q341*|N4BP2_uc010ifr.2_Nonsense_Mutation_p.Q341*	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	421						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						AAGTGCTTATCAAGTACAAGA	0.413													9	52					0	0	0.006214	0	0
RHOH	399	broad.mit.edu	37	4	40245307	40245307	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:40245307G>A	uc003guz.2	+	3	1025	c.301G>A	c.(301-303)GAA>AAA	p.E101K		NM_004310	NP_004301	Q15669	RHOH_HUMAN	ras homolog gene family, member H precursor	101					negative regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|T cell differentiation	cytosol|mitochondrion|plasma membrane	GTP binding|GTPase inhibitor activity|kinase inhibitor activity|Rho GTPase binding			ovary(1)|lung(1)	2						GTGGATTGGTGAAATTAGGAG	0.577													9	38					0	0	0.008291	0	0
RBM47	54502	broad.mit.edu	37	4	40440230	40440230	+	Silent	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:40440230G>C	uc003gvc.2	-	4	1391	c.681C>G	c.(679-681)GCC>GCG	p.A227A	RBM47_uc003gvd.2_Silent_p.A227A|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.A189A|RBM47_uc003gvg.1_Silent_p.A227A	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	227	RRM 2.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CCCAGTCCACGGCGATCTGGT	0.647													15	38					0	0	0.006122	0	0
GABRA4	2557	broad.mit.edu	37	4	46930291	46930291	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:46930291A>G	uc003gxg.2	-	9	1755	c.1616T>C	c.(1615-1617)GTT>GCT	p.V539A		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	539	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TAAATAAACAACCCAATAAAC	0.368													14	57					0	0	0.003163	0	0
GABRB1	2560	broad.mit.edu	37	4	47405379	47405379	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:47405379G>A	uc003gxh.2	+	6	963	c.589G>A	c.(589-591)GAA>AAA	p.E197K	GABRB1_uc011bze.1_Missense_Mutation_p.E127K	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	197	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GAATGGAGGAGAAGGGGCAGT	0.378													11	41					0	0	0.000978	0	0
CWH43	80157	broad.mit.edu	37	4	49005875	49005875	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:49005875G>A	uc003gyv.2	+	7	1108	c.926G>A	c.(925-927)GGG>GAG	p.G309E	CWH43_uc011bzl.1_Missense_Mutation_p.G282E	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	309					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						ATTAACTCAGGGACAAACCCT	0.463													8	46					0	0	0.003080	0	0
FIP1L1	81608	broad.mit.edu	37	4	54310258	54310258	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:54310258C>T	uc003gzy.2	+	15	1459	c.1273C>T	c.(1273-1275)CCA>TCA	p.P425S	PDGFRA_uc003haa.2_Intron|FIP1L1_uc011bzu.1_Missense_Mutation_p.P419S|FIP1L1_uc003gzz.2_Missense_Mutation_p.P351S|FIP1L1_uc003hab.2_Missense_Mutation_p.P390S|FIP1L1_uc003hac.2_Missense_Mutation_p.P179S|FIP1L1_uc010ign.2_RNA|FIP1L1_uc003had.2_Silent_p.F9F|FIP1L1_uc003hae.2_Silent_p.F9F	NM_030917	NP_112179	Q6UN15	FIP1_HUMAN	FIP1 like 1 isoform 1	425					mRNA processing	nucleus	RNA binding			ovary(1)|skin(1)	2			GBM - Glioblastoma multiforme(3;3.31e-36)|LUSC - Lung squamous cell carcinoma(32;0.0134)			ACGTGCATTTCCATATGGCAA	0.308			T	PDGFRA	idiopathic hypereosinophilic syndrome								15	30					0	0	0.004990	0	0
POLR2B	5431	broad.mit.edu	37	4	57883317	57883317	+	Silent	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:57883317T>C	uc003hcl.1	+	15	2107	c.2064T>C	c.(2062-2064)GCT>GCC	p.A688A	POLR2B_uc011cae.1_Silent_p.A681A|POLR2B_uc011caf.1_Silent_p.A613A|POLR2B_uc003hcm.1_Silent_p.A181A	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	688					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					AAGAAGTAGCTTATTGTTCCA	0.418													73	81					0	0	0.003610	0	0
LPHN3	23284	broad.mit.edu	37	4	62363054	62363054	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:62363054C>T	uc010ihh.2	+	1	216	c.43C>T	c.(43-45)CCA>TCA	p.P15S	LPHN3_uc003hcq.3_Missense_Mutation_p.P15S|LPHN3_uc010ihg.1_Missense_Mutation_p.P15S	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	15					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						GCTCTTAGCTCCAATAATTCA	0.378													5	18					0	0	0.003080	0	0
LPHN3	23284	broad.mit.edu	37	4	62813953	62813953	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:62813953C>T	uc010ihh.2	+	14	2733	c.2560C>T	c.(2560-2562)CTA>TTA	p.L854L	LPHN3_uc003hcq.3_Silent_p.L854L|LPHN3_uc003hct.2_Silent_p.L247L	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	841	GPS.|Extracellular (Potential).	Cleavage (By similarity).			neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TTGTAACCACCTAACAAATTT	0.373													12	20					0	0	0.001855	0	0
TECRL	253017	broad.mit.edu	37	4	65147237	65147237	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:65147237G>A	uc003hcv.2	-	10	982	c.873C>T	c.(871-873)TTC>TTT	p.F291F	TECRL_uc010ihi.2_RNA	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	291					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						ACATCCATGTGAAGGGGTTAT	0.338													16	22					0	0	0.006122	0	0
TECRL	253017	broad.mit.edu	37	4	65194272	65194272	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:65194272G>A	uc003hcv.2	-	3	398	c.289C>T	c.(289-291)CCA>TCA	p.P97S	TECRL_uc003hcw.2_Missense_Mutation_p.P97S	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	97					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						TACCACTTTGGACCTATTCAA	0.323													25	31					0	0	0.008361	0	0
UBA6	55236	broad.mit.edu	37	4	68547871	68547871	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:68547871G>A	uc003hdg.3	-	3	247	c.195C>T	c.(193-195)TTC>TTT	p.F65F	UBA6_uc003hdi.2_Silent_p.F65F|UBA6_uc003hdj.2_Silent_p.F65F	NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	65					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						TCCCACTTAAGAAAACATGGG	0.348													16	44					0	0	0.007413	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68691497	68691497	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:68691497C>T	uc003hdq.2	-	9	1113	c.1048G>A	c.(1048-1050)GGA>AGA	p.G350R	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc003hdp.2_Missense_Mutation_p.G131R|TMPRSS11D_uc011caj.1_Missense_Mutation_p.G233R	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	350	Peptidase S1.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CACAGCATTCCAGACAAGATG	0.443													22	28					0	0	0.001882	0	0
UGT2B10	7365	broad.mit.edu	37	4	69682275	69682275	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:69682275G>A	uc003hee.2	+	1	563	c.538G>A	c.(538-540)GAA>AAA	p.E180K	UGT2B10_uc011cam.1_Intron	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	180					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CTACTCATTTGAAAGGCACAG	0.408													33	62					0	0	0.003755	0	0
UGT2A3	79799	broad.mit.edu	37	4	69796941	69796941	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:69796941C>T	uc003hef.2	-	4	1047	c.1016G>A	c.(1015-1017)GGA>GAA	p.G339E	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	339	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TGGTTTTTTTCCTTTGTACCT	0.358													8	26					0	0	0.006214	0	0
UGT2A3	79799	broad.mit.edu	37	4	69798379	69798379	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:69798379G>A	uc003hef.2	-	3	994	c.963C>T	c.(961-963)ATC>ATT	p.I321I	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	321	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CTGAAGCAATGATATTAGCCT	0.403													47	91					0	0	0.003610	0	0
UGT2B7	7364	broad.mit.edu	37	4	69964396	69964396	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:69964396C>T	uc003heg.3	+	2	906	c.860C>T	c.(859-861)CCC>CTC	p.P287L	UGT2B7_uc010ihq.2_Missense_Mutation_p.P287L	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	287					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CCTGCCAAACCCCTGCCTAAG	0.373													18	134					0	0	0.008871	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079978	70079978	+	Missense_Mutation	SNP	G	A	A	rs142415589	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:70079978G>A	uc003heh.2	-	1	472	c.463C>T	c.(463-465)CCC>TCC	p.P155S	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	155					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TCACCACAGGGAAAAACAGCA	0.398													13	91					0	0	0.001368	0	0
UGT2B11	10720	broad.mit.edu	37	4	70080284	70080284	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:70080284C>T	uc003heh.2	-	1	166	c.157G>A	c.(157-159)GTG>ATG	p.V53M	uc003hei.1_RNA	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	53					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						AGTACAGTCACCTCATGACCT	0.413													47	80					0	0	0.003610	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361463	70361463	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:70361463T>C	uc003hek.3	-	1	164	c.117A>G	c.(115-117)ATA>ATG	p.I39M	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.I39M	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	39					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						GGATTGTCTTTATATTCATCC	0.468													62	86					0	0	0.003610	0	0
C4orf40	401137	broad.mit.edu	37	4	71024290	71024290	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:71024290G>A	uc003hfa.3	+	4	394	c.321G>A	c.(319-321)AGG>AGA	p.R107R	C4orf40_uc003hfb.3_Silent_p.R107R	NM_214711	NP_999876	Q6MZM9	CD040_HUMAN	hypothetical protein LOC401137 precursor	107						extracellular region					0						TCCCTCCTAGGGGTTTCCCGT	0.527													70	115					0	0	0.003610	0	0
PROL1	58503	broad.mit.edu	37	4	71275399	71275399	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:71275399G>A	uc003hfi.2	+	3	528	c.354G>A	c.(352-354)AGG>AGA	p.R118R		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	118	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				GACCTATTAGGATATTAAAAC	0.403													21	94					0	0	0.002780	0	0
ENAM	10117	broad.mit.edu	37	4	71509241	71509241	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:71509241C>T	uc011caw.1	+	9	2379	c.2098C>T	c.(2098-2100)CTT>TTT	p.L700F		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	700					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AAAGGAATATCTTCCCTATTC	0.388													10	45					0	0	0.008291	0	0
GC	2638	broad.mit.edu	37	4	72620730	72620730	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:72620730C>T	uc003hge.2	-	9	1282	c.1129G>A	c.(1129-1131)GAT>AAT	p.D377N	GC_uc003hgd.2_Missense_Mutation_p.D255N|GC_uc010iie.2_Missense_Mutation_p.D377N|GC_uc010iif.2_Missense_Mutation_p.D396N	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	377	Albumin 2.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	TCTTCAACATCACAGCATTCA	0.328													11	38					0	0	0.002450	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013483	73013483	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:73013483T>C	uc003hgg.2	+	4	1621	c.1523T>C	c.(1522-1524)TTA>TCA	p.L508S	NPFFR2_uc010iig.1_Missense_Mutation_p.L290S|NPFFR2_uc003hgi.2_Missense_Mutation_p.L409S|NPFFR2_uc003hgh.2_Missense_Mutation_p.L406S|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	508	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			CAACAGGAATTAGTGATGGAA	0.343													17	61					0	0	0.008871	0	0
RASSF6	166824	broad.mit.edu	37	4	74442203	74442203	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:74442203G>A	uc003hhd.1	-	10	1081	c.958C>T	c.(958-960)CAC>TAC	p.H320Y	RASSF6_uc003hhc.1_Missense_Mutation_p.H288Y|RASSF6_uc010iik.1_Missense_Mutation_p.H254Y|RASSF6_uc010iil.1_Missense_Mutation_p.H276Y	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	320	SARAH.				apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			AGAGAAAAGTGAAAGTTAATG	0.348													6	9					0	0	0.001168	0	0
MTHFD2L	441024	broad.mit.edu	37	4	75091075	75091075	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:75091075C>T	uc011cbk.1	+	6	796	c.769C>T	c.(769-771)CAT>TAT	p.H257Y	MTHFD2L_uc011cbj.1_Missense_Mutation_p.H199Y|MTHFD2L_uc003hhu.2_RNA	NM_001144978	NP_001138450	Q9H903	MTD2L_HUMAN	methylenetetrahydrofolate dehydrogenase 2-like	199					folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process		binding|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2			all cancers(17;0.0101)|Lung(101;0.196)			ACTGAAGATTCATACGCAGCT	0.393													20	108					0	0	0.001882	0	0
ART3	419	broad.mit.edu	37	4	77033592	77033592	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:77033592G>A	uc003hjo.2	+	12	1209	c.1090G>A	c.(1090-1092)GGC>AGC	p.G364S	ART3_uc003hjk.2_Missense_Mutation_p.G342S|ART3_uc003hjn.2_Missense_Mutation_p.G353S|ART3_uc003hjp.2_RNA|ART3_uc010ijb.2_RNA|ART3_uc003hjq.2_RNA|ART3_uc003hjr.2_Missense_Mutation_p.G345S|ART3_uc010ijc.2_Missense_Mutation_p.G323S|ART3_uc010ijd.2_Missense_Mutation_p.G323S	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	364					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TGCATCCTCGGGCAAACTGCT	0.413													15	70					0	0	0.002450	0	0
MRPL1	65008	broad.mit.edu	37	4	78804427	78804427	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:78804427G>A	uc003hku.2	+	3	373	c.175G>A	c.(175-177)GAA>AAA	p.E59K	MRPL1_uc010iji.1_5'UTR	NM_020236	NP_064621	Q9BYD6	RM01_HUMAN	mitochondrial ribosomal protein L1 precursor	59							RNA binding				0						AGGTGCTAAAGAAAAAACACC	0.279													6	7					0	0	0.001168	0	0
FRAS1	80144	broad.mit.edu	37	4	79258883	79258883	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:79258883C>T	uc003hlb.2	+	20	2774	c.2334C>T	c.(2332-2334)TCC>TCT	p.S778S	FRAS1_uc003hkw.2_Silent_p.S778S|FRAS1_uc003hkz.2_Silent_p.S482S	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	778	FU 8.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ACTGCATCTCCTGTTACCCTC	0.537													36	133					0	0	0.004289	0	0
FRAS1	80144	broad.mit.edu	37	4	79334179	79334179	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:79334179G>A	uc003hlb.2	+	32	4805	c.4365G>A	c.(4363-4365)GCG>GCA	p.A1455A	FRAS1_uc003hkw.2_Silent_p.A1455A	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1454	CSPG 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCAACATCGCGATCTTACCAC	0.512													5	18					0	0	0.003080	0	0
PAQR3	152559	broad.mit.edu	37	4	79847831	79847831	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:79847831G>A	uc003hlp.1	-	4	750	c.546C>T	c.(544-546)ATC>ATT	p.I182I	PAQR3_uc003hlm.2_RNA|PAQR3_uc003hln.2_RNA|PAQR3_uc003hlq.1_Silent_p.I64I	NM_001040202	NP_001035292	Q6TCH7	PAQR3_HUMAN	progestin and adipoQ receptor family member III	182	Helical; (Potential).					Golgi membrane|integral to membrane	receptor activity				0						ACACTGCCAGGATCATAGCAA	0.408													25	116					0	0	0.007291	0	0
GK2	2712	broad.mit.edu	37	4	80328892	80328892	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:80328892G>A	uc003hlu.2	-	1	481	c.463C>T	c.(463-465)CGT>TGT	p.R155C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	155					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						AGCATCCAACGAAGTTTTACT	0.408													32	74					0	0	0.002096	0	0
BMP3	651	broad.mit.edu	37	4	81967371	81967371	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:81967371C>T	uc003hmg.3	+	2	1116	c.796C>T	c.(796-798)CCC>TCC	p.P266S		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	266					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						CCGGAATTTTCCCACTGGAAC	0.498													12	67					0	0	0.000978	0	0
PRKG2	5593	broad.mit.edu	37	4	82070042	82070042	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:82070042G>A	uc003hmh.2	-	8	1164	c.1150C>T	c.(1150-1152)CGA>TGA	p.R384*	PRKG2_uc011ccf.1_5'UTR|PRKG2_uc011ccg.1_5'UTR|PRKG2_uc011cch.1_Nonsense_Mutation_p.R384*	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	384	cGMP 2.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						ACTCACTCTCGATCTATAACC	0.418													27	138					0	0	0.006320	0	0
HELQ	113510	broad.mit.edu	37	4	84348796	84348796	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:84348796G>A	uc003hom.2	-	13	2775	c.2596C>T	c.(2596-2598)CTT>TTT	p.L866F	HELQ_uc010ikb.2_Missense_Mutation_p.L799F|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	866							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						AGATGAAGAAGGCTTTCAAGC	0.368								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					6	34					0	0	0.001984	0	0
SLC10A6	345274	broad.mit.edu	37	4	87770009	87770009	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:87770009G>A	uc003hqd.2	-	1	408	c.260C>T	c.(259-261)GCC>GTC	p.A87V		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	87	Helical; (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		AAAGCTAATGGCCAGGAGATA	0.537													16	30					0	0	0.004007	0	0
HSD17B13	345275	broad.mit.edu	37	4	88235055	88235055	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:88235055G>A	uc003hqo.2	-	5	678	c.615C>T	c.(613-615)GCC>GCT	p.A205A	HSD17B13_uc010ikk.2_Silent_p.A169A	NM_178135	NP_835236	Q7Z5P4	DHB13_HUMAN	hydroxysteroid (17-beta) dehydrogenase 13	205						extracellular region	binding|oxidoreductase activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.000308)		TTTTTCCCAAGGCCTGAAGTT	0.413													9	30					0	0	0.004482	0	0
SPARCL1	8404	broad.mit.edu	37	4	88411446	88411446	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:88411446C>T	uc010ikm.2	-	8	2082	c.1510G>A	c.(1510-1512)GAT>AAT	p.D504N	SPARCL1_uc011cdc.1_Missense_Mutation_p.D379N|SPARCL1_uc003hqs.3_Missense_Mutation_p.D504N|SPARCL1_uc011cdd.1_Missense_Mutation_p.D379N	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	504	Kazal-like.				signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		CCAAAATAATCCAGCTGGAGT	0.458													76	164					0	0	0.003610	0	0
SNCA	6622	broad.mit.edu	37	4	90650377	90650377	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:90650377G>A	uc003hsq.2	-	5	617	c.358C>T	c.(358-360)CCT>TCT	p.P120S	SNCA_uc010ikt.2_Missense_Mutation_p.P106S|SNCA_uc003hso.2_Intron|SNCA_uc003hsp.2_Missense_Mutation_p.P120S|SNCA_uc003hsr.2_Missense_Mutation_p.P120S|uc011cdr.1_5'Flank	NM_001146054	NP_001139526	P37840	SYUA_HUMAN	alpha-synuclein isoform NACP140	120					activation of caspase activity|anti-apoptosis|negative regulation of dopamine uptake|negative regulation of exocytosis|negative regulation of histone acetylation|negative regulation of microtubule polymerization|negative regulation of monooxygenase activity|negative regulation of norepinephrine uptake|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of serotonin uptake|negative regulation of thrombin receptor signaling pathway|negative regulation of transporter activity|positive regulation of endocytosis|positive regulation of inositol phosphate biosynthetic process|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein serine/threonine kinase activity|positive regulation of receptor recycling|positive regulation of release of sequestered calcium ion into cytosol|receptor internalization|regulation of phospholipase activity|response to interferon-gamma|response to interleukin-1|response to iron(II) ion|response to lipopolysaccharide|response to magnesium ion|synaptic vesicle endocytosis	actin cytoskeleton|axon|cell cortex|cell junction|cytosol|fibril|growth cone|nucleus|synapse	alpha-tubulin binding|calcium ion binding|caspase inhibitor activity|dynein binding|ferrous iron binding|histone binding|Hsp70 protein binding|kinesin binding|magnesium ion binding|phosphoprotein binding|tau protein binding|zinc ion binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.42e-05)	Melatonin(DB01065)	TCATTGTCAGGATCCACAGGC	0.313													29	52					0	0	0.002096	0	0
PDLIM5	10611	broad.mit.edu	37	4	95497158	95497158	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:95497158C>T	uc003hti.2	+	5	834	c.683C>T	c.(682-684)TCC>TTC	p.S228F	PDLIM5_uc003htf.2_Intron|PDLIM5_uc003htg.2_Missense_Mutation_p.S119F|PDLIM5_uc011cdx.1_Missense_Mutation_p.S119F|PDLIM5_uc003hth.2_Missense_Mutation_p.S119F|PDLIM5_uc003htj.2_Intron|PDLIM5_uc003htk.2_Missense_Mutation_p.S119F|PDLIM5_uc011cdy.1_Missense_Mutation_p.S106F	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	228					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		AGAAGAGGATCCCAGGGTGAC	0.483													11	40					0	0	0.003163	0	0
UNC5C	8633	broad.mit.edu	37	4	96163673	96163673	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:96163673C>T	uc003htp.1	-	7	1169	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K	UNC5C_uc010ilc.1_Missense_Mutation_p.E339K|UNC5C_uc003htq.2_Missense_Mutation_p.E339K	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	339	Extracellular (Potential).|TSP type-1 2.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		GCCGTGCACTCCCTCCTGCGC	0.582													7	18					0	0	0.001984	0	0
PDHA2	5161	broad.mit.edu	37	4	96761622	96761623	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:96761622_96761623CC>TT	uc003htr.3	+	1	384_385	c.321_322CC>TT	c.(319-324)AACCCC>AATTCC	p.P108S		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	108					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	CCGGCATAAACCCCTCGGATCA	0.525													19	89					0	0	0.004672	0	0
TACR3	6870	broad.mit.edu	37	4	104511147	104511147	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:104511147G>A	uc003hxe.1	-	5	1233	c.1090C>T	c.(1090-1092)CGA>TGA	p.R364*		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	364	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AAGCCAGCTCGAAATCTGAGG	0.428													7	16					0	0	0.001984	0	0
TET2	54790	broad.mit.edu	37	4	106155143	106155143	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:106155143G>T	uc003hxk.2	+	3	430	c.44G>T	c.(43-45)AGT>ATT	p.S15I	TET2_uc011cez.1_Missense_Mutation_p.S36I|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.S15I|TET2_uc003hxi.1_Missense_Mutation_p.S15I	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	15					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		AACAGACTAAGTCCATTCCTG	0.502			Mis N|F		MDS								8	29					0.00307968	0.00340355	0.003080	1	0
TET2	54790	broad.mit.edu	37	4	106155145	106155146	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:106155145_106155146CC>TT	uc003hxk.2	+	3	432_433	c.46_47CC>TT	c.(46-48)CCA>TTA	p.P16L	TET2_uc011cez.1_Missense_Mutation_p.P37L|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.P16L|TET2_uc003hxi.1_Missense_Mutation_p.P16L	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	16					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		CAGACTAAGTCCATTCCTGATA	0.5			Mis N|F		MDS								8	27					0	0	0.004672	0	0
DKK2	27123	broad.mit.edu	37	4	107845144	107845144	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:107845144G>A	uc003hyi.2	-	4	1452	c.747C>T	c.(745-747)TCC>TCT	p.S249S	DKK2_uc003hyj.1_3'UTR	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	249	DKK-type Cys-2.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		GTCTGGCTTTGGAGGAGTAGG	0.448													33	62					0	0	0.004289	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109680978	109680978	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:109680978T>C	uc003hzc.2	-	3	443	c.262A>G	c.(262-264)ATT>GTT	p.I88V	AGXT2L1_uc010imc.2_Missense_Mutation_p.I82V|AGXT2L1_uc011cfm.1_Missense_Mutation_p.I48V|AGXT2L1_uc011cfn.1_Missense_Mutation_p.I15V|AGXT2L1_uc011cfo.1_Missense_Mutation_p.I30V	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	88					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		TACTCAACAATGTTGTCGTGG	0.443													16	28					0	0	0.004990	0	0
CFI	3426	broad.mit.edu	37	4	110667517	110667517	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:110667517G>A	uc003hzr.3	-	11	1498	c.1290C>T	c.(1288-1290)ATC>ATT	p.I430I	CFI_uc003hzq.2_Silent_p.I227I|CFI_uc011cft.1_Silent_p.I438I|CFI_uc003hzs.3_Silent_p.I423I	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	430	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		CAATCAAAGCGATGTCATTTT	0.408													9	37					0	0	0.006214	0	0
GAR1	54433	broad.mit.edu	37	4	110743579	110743579	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:110743579G>A	uc003hzt.2	+	5	813	c.506G>A	c.(505-507)AGA>AAA	p.R169K	GAR1_uc003hzu.2_Missense_Mutation_p.R169K|GAR1_uc010imi.2_Missense_Mutation_p.R169K	NM_018983	NP_061856	Q9NY12	GAR1_HUMAN	nucleolar protein family A, member 1	169	RGG-box 2.				rRNA processing|snRNA pseudouridine synthesis	box H/ACA snoRNP complex|Cajal body	cation channel activity|pseudouridine synthase activity|snoRNA binding				0						GGACCTCCaagaggtggtggc	0.249													6	24					0	0	0.001984	0	0
CAMK2D	817	broad.mit.edu	37	4	114376973	114376973	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:114376973G>A	uc003ibi.2	-	18	2297	c.1438C>T	c.(1438-1440)CCC>TCC	p.P480S	CAMK2D_uc003ibj.2_Intron|CAMK2D_uc003ibk.2_Intron|CAMK2D_uc003ibo.3_Missense_Mutation_p.P514S	NM_001221	NP_001212	Q13557	KCC2D_HUMAN	calcium/calmodulin-dependent protein kinase II	480					interferon-gamma-mediated signaling pathway|regulation of cell growth|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1		Ovarian(17;0.00369)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000271)		GGAATACAGGGTGGCCTATTA	0.413													18	36					0	0	0.010504	0	0
NDST4	64579	broad.mit.edu	37	4	115754843	115754843	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:115754843C>T	uc003ibu.2	-	12	2994	c.2315G>A	c.(2314-2316)AGA>AAA	p.R772K	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	772	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TGGGTCAGATCTCAGCTGCTG	0.383													6	26					0	0	0.003080	0	0
SEC24D	9871	broad.mit.edu	37	4	119736191	119736191	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:119736191G>A	uc003ici.3	-	6	1065	c.793C>T	c.(793-795)CCT>TCT	p.P265S	SEC24D_uc003icj.3_Missense_Mutation_p.P266S|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA|SEC24D_uc011cgg.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	265	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						ACTGGGCTAGGGATAGAGTCA	0.507													20	106					0	0	0.002780	0	0
SYNPO2	171024	broad.mit.edu	37	4	119947923	119947923	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:119947923C>T	uc003icm.3	+	3	595	c.399C>T	c.(397-399)CTC>CTT	p.L133L	SYNPO2_uc010ina.2_Silent_p.L133L|SYNPO2_uc010inb.2_Silent_p.L133L|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.L61L	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	133						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AATTCTTCCTCGCCCCTGTCA	0.522													11	44					0	0	0.000978	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948253	119948253	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:119948253G>A	uc003icm.3	+	3	925	c.729G>A	c.(727-729)TCG>TCA	p.S243S	SYNPO2_uc010ina.2_Silent_p.S243S|SYNPO2_uc010inb.2_Silent_p.S243S|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.S171S	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	243						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding	p.S243S(1)		ovary(2)	2						ACATAAATTCGATCCCTACTA	0.493													4	22					0	0	0.009096	0	0
KIAA1109	84162	broad.mit.edu	37	4	123161272	123161273	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:123161272_123161273CT>TC	uc003ieh.2	+	27	4480_4481	c.4435_4436CT>TC	c.(4435-4437)CTA>TCA	p.L1479S	KIAA1109_uc003iei.1_Missense_Mutation_p.L1232S|KIAA1109_uc010ins.1_Missense_Mutation_p.L822S|KIAA1109_uc003iek.2_Missense_Mutation_p.L98S	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1479					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TATAGAACATCTATATATTGTA	0.401													16	32					0	0	0.004672	0	0
KIAA1109	84162	broad.mit.edu	37	4	123237932	123237932	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:123237932G>A	uc003ieh.2	+	60	10630	c.10585G>A	c.(10585-10587)GGA>AGA	p.G3529R	KIAA1109_uc003iel.1_Missense_Mutation_p.G1464R	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3529					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TAGCCAGCCGGGAGAACTTAG	0.408													10	56					0	0	0.006214	0	0
KIAA1109	84162	broad.mit.edu	37	4	123274229	123274229	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:123274229C>T	uc003ieh.2	+	79	14065	c.14020C>T	c.(14020-14022)CGT>TGT	p.R4674C	KIAA1109_uc003iem.2_Missense_Mutation_p.R1030C	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4674					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCCAAATTTTCGTTCAAAATC	0.368													28	34					0	0	0.005443	0	0
FAT4	79633	broad.mit.edu	37	4	126239997	126239997	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:126239997C>T	uc003ifj.3	+	1	2431	c.2431C>T	c.(2431-2433)CAT>TAT	p.H811Y		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	811	Extracellular (Potential).|Cadherin 8.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GCTGGGATATCATGTGGGTAG	0.443													15	76					0	0	0.006122	0	0
FAT4	79633	broad.mit.edu	37	4	126336719	126336719	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:126336719G>A	uc003ifj.3	+	5	6601	c.6601G>A	c.(6601-6603)GAA>AAA	p.E2201K	FAT4_uc011cgp.1_Missense_Mutation_p.E499K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2201	Cadherin 21.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TACCAATCAGGAATTTCGGAT	0.433													20	71					0	0	0.001882	0	0
INTU	27152	broad.mit.edu	37	4	128632131	128632131	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:128632131C>T	uc003ifk.1	+	14	2503	c.2433C>T	c.(2431-2433)ATC>ATT	p.I811I	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	811										ovary(1)	1						TGCAAGGAATCTTTATTACTC	0.398													17	47					0	0	0.001882	0	0
PCDH18	54510	broad.mit.edu	37	4	138442640	138442640	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:138442640G>A	uc003ihe.3	-	4	3338	c.2951C>T	c.(2950-2952)TCC>TTC	p.S984F	PCDH18_uc003ihf.3_Missense_Mutation_p.S976F|PCDH18_uc011cgz.1_Missense_Mutation_p.S195F|PCDH18_uc003ihg.3_Missense_Mutation_p.S763F|PCDH18_uc011cha.1_Missense_Mutation_p.S164F	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	984	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TCCAAAGGTGGAAAAACTCTT	0.522													13	44					0	0	0.001368	0	0
CLGN	1047	broad.mit.edu	37	4	141327157	141327157	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:141327157G>A	uc011chi.1	-	6	576	c.358C>T	c.(358-360)CAT>TAT	p.H120Y	CLGN_uc003iii.2_Missense_Mutation_p.H120Y	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	120	Lumenal (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					GATATTGCATGATGCTTTGCT	0.338													10	32					0	0	0.008291	0	0
GYPB	2994	broad.mit.edu	37	4	144920579	144920579	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:144920579G>A	uc003ijm.1	-	3	216	c.160C>T	c.(160-162)CGT>TGT	p.R54C	GYPA_uc003ijn.2_Intron|GYPB_uc011chs.1_RNA|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_RNA|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_RNA|GYPB_uc011chw.1_RNA|GYPB_uc011chx.1_Intron|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_RNA	NM_002100	NP_002091	P06028	GLPB_HUMAN	glycophorin B precursor	54	Extracellular (Potential).		R -> H (in Mit antigen).			integral to plasma membrane					0	all_hematologic(180;0.158)					ACAGTGAAACGATGGACAAGT	0.313													4	15					0	0	0.009096	0	0
LRBA	987	broad.mit.edu	37	4	151749501	151749501	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:151749501G>A	uc010ipj.2	-	30	5476	c.5002C>T	c.(5002-5004)CCG>TCG	p.P1668S	LRBA_uc003ilt.3_Missense_Mutation_p.P327S|LRBA_uc003ilu.3_Missense_Mutation_p.P1668S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1668						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					GAAACTGACGGTGTAGCCTTA	0.433													28	48					0	0	0.008361	0	0
TRIM2	23321	broad.mit.edu	37	4	154191564	154191564	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:154191564A>G	uc003ing.2	+	2	228	c.27A>G	c.(25-27)CCA>CCG	p.P9P	TRIM2_uc003inh.2_Silent_p.P36P|TRIM2_uc003ini.1_Silent_p.P27P	NM_001130067	NP_001123539	Q9C040	TRIM2_HUMAN	tripartite motif-containing 2 isoform 2	9						cytoplasm	zinc ion binding			central_nervous_system(1)	1	all_hematologic(180;0.093)	Medulloblastoma(177;0.00225)		GBM - Glioblastoma multiforme(119;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0703)		CCAACATCCCAAGTCCTGTGG	0.522													26	59					0	0	0.003330	0	0
FGA	2243	broad.mit.edu	37	4	155505503	155505503	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:155505503C>T	uc003iod.1	-	6	2432	c.2374G>A	c.(2374-2376)GCA>ACA	p.A792T		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	792	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CACTGGTCTGCATCCCTGTCA	0.527													32	60					0	0	0.002096	0	0
FGA	2243	broad.mit.edu	37	4	155507206	155507206	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:155507206G>A	uc003iod.1	-	5	1433	c.1375C>T	c.(1375-1377)CGT>TGT	p.R459C	FGA_uc003ioe.1_Missense_Mutation_p.R459C|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	459	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GAGCATGAACGACGCGTGGTG	0.463													32	168					0	0	0.003271	0	0
FGA	2243	broad.mit.edu	37	4	155507418	155507418	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:155507418G>A	uc003iod.1	-	5	1221	c.1163C>T	c.(1162-1164)TCT>TTT	p.S388F	FGA_uc003ioe.1_Missense_Mutation_p.S388F|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	388	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TCCAGATTCAGAGTGCCATTG	0.537													23	57					0	0	0.002299	0	0
RBM46	166863	broad.mit.edu	37	4	155720234	155720234	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:155720234A>C	uc003ioo.2	+	4	1093	c.920A>C	c.(919-921)AAA>ACA	p.K307T	RBM46_uc011cim.1_Missense_Mutation_p.K307T|RBM46_uc003iop.1_Missense_Mutation_p.K307T	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	307	RRM 3.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				ACACTAGCTAAACCAGTAAAT	0.383													5	24					0	0	0.000602	0	0
GRIA2	2891	broad.mit.edu	37	4	158256915	158256915	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:158256915C>T	uc003ipm.3	+	10	1818	c.1359C>T	c.(1357-1359)ATC>ATT	p.I453I	GRIA2_uc011cit.1_Silent_p.I406I|GRIA2_uc003ipl.3_Silent_p.I453I|GRIA2_uc003ipk.3_Silent_p.I406I|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	453	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	CTGCAGAAATCGCCAAACATT	0.443													10	14					0	0	0.008291	0	0
GRIA2	2891	broad.mit.edu	37	4	158262423	158262423	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:158262423T>C	uc003ipm.3	+	12	2311	c.1852T>C	c.(1852-1854)TCT>CCT	p.S618P	GRIA2_uc011cit.1_Missense_Mutation_p.S571P|GRIA2_uc003ipl.3_Missense_Mutation_p.S618P|GRIA2_uc003ipk.3_Missense_Mutation_p.S571P|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	618	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TAGATCCCTCTCTGGGCGCAT	0.398													26	81					0	0	0.005443	0	0
PPID	5481	broad.mit.edu	37	4	159638288	159638288	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:159638288A>G	uc003iqc.2	-	4	510	c.398T>C	c.(397-399)TTT>TCT	p.F133S		NM_005038	NP_005029	Q08752	PPID_HUMAN	peptidylprolyl isomerase D	133	PPIase cyclophilin-type.				protein folding	cytoplasm|intermediate filament cytoskeleton	cyclosporin A binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0159)		TGTTGTGATAAAAAACTGAGA	0.403													17	34					0	0	0.004990	0	0
FSTL5	56884	broad.mit.edu	37	4	162402207	162402208	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:162402207_162402208GG>AA	uc003iqh.2	-	13	2008_2009	c.1572_1573CC>TT	c.(1570-1575)GTCCTT>GTTTTT	p.L525F	FSTL5_uc003iqi.2_Missense_Mutation_p.L524F|FSTL5_uc010iqv.2_Missense_Mutation_p.L515F	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	525						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TCAACAATAAGGACTCTGTCCA	0.337													45	66					0	0	0.004672	0	0
NPY1R	4886	broad.mit.edu	37	4	164247100	164247100	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:164247100G>A	uc003iqm.1	-	2	873	c.607C>T	c.(607-609)CCA>TCA	p.P203S	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	203	Extracellular (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GAGTCCGATGGAAATTGATCA	0.383													8	27					0	0	0.003080	0	0
NPY1R	4886	broad.mit.edu	37	4	164247183	164247183	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:164247183A>T	uc003iqm.1	-	2	790	c.524T>A	c.(523-525)ATC>AAC	p.I175N	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	175	Helical; Name=4; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TACTTGGTAGATCAGGAAAGG	0.423													17	21					0	0	0.004007	0	0
NPY5R	4889	broad.mit.edu	37	4	164271582	164271582	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:164271582C>T	uc003iqn.2	+	4	339	c.157C>T	c.(157-159)CTT>TTT	p.L53F		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	53	Helical; Name=1; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				ATTTGTAAGTCTTCTTGGCTT	0.398													42	42					0	0	0.006999	0	0
MARCH1	55016	broad.mit.edu	37	4	164506997	164506997	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:164506997G>A	uc003iqs.1	-	6	1304	c.327C>T	c.(325-327)TCC>TCT	p.S109S	MARCH1_uc003iqr.1_Silent_p.S92S	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	109	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GGTGGAGGCAGGACTGGTGGA	0.542													21	50					0	0	0.008871	0	0
TRIM61	391712	broad.mit.edu	37	4	165891019	165891019	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:165891019C>T	uc003iqw.2	-	3	747	c.136G>A	c.(136-138)GAT>AAT	p.D46N		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	46	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		TCATGTAGATCCTTCCAGGAC	0.463													8	43					0	0	0.008291	0	0
TLL1	7092	broad.mit.edu	37	4	167012404	167012404	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:167012404C>T	uc003irh.1	+	19	3214	c.2567C>T	c.(2566-2568)CCC>CTC	p.P856L	TLL1_uc011cjn.1_Missense_Mutation_p.P879L|TLL1_uc011cjo.1_Missense_Mutation_p.P680L	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	856	CUB 4.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		ATACCAGATCCCCTTGTGGCT	0.403													10	30					0	0	0.008291	0	0
TLL1	7092	broad.mit.edu	37	4	167020676	167020676	+	Silent	SNP	C	T	T	rs115401178	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:167020676C>T	uc003irh.1	+	20	3551	c.2904C>T	c.(2902-2904)TCC>TCT	p.S968S	TLL1_uc011cjn.1_Silent_p.S991S|TLL1_uc011cjo.1_Silent_p.S792S	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	968	CUB 5.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TCTGTGGATCCGGGGTAAATA	0.423													20	59					0	0	0.010504	0	0
SPOCK3	50859	broad.mit.edu	37	4	167658649	167658649	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:167658649C>T	uc003iri.1	-	11	1251	c.1110G>A	c.(1108-1110)ATG>ATA	p.M370I	SPOCK3_uc011cjp.1_Missense_Mutation_p.M327I|SPOCK3_uc011cjq.1_Missense_Mutation_p.M379I|SPOCK3_uc011cjr.1_Missense_Mutation_p.M250I|SPOCK3_uc003irj.1_Missense_Mutation_p.M367I|SPOCK3_uc011cjs.1_Missense_Mutation_p.M319I|SPOCK3_uc011cjt.1_Missense_Mutation_p.M278I|SPOCK3_uc011cju.1_Missense_Mutation_p.M263I|SPOCK3_uc011cjv.1_Missense_Mutation_p.M272I	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	370	Thyroglobulin type-1.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		TTCTGGATCCCATGACTTCAT	0.398													26	84					0	0	0.008361	0	0
PALLD	23022	broad.mit.edu	37	4	169632945	169632945	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:169632945G>A	uc011cjx.1	+	10	2046	c.1835G>A	c.(1834-1836)GGA>GAA	p.G612E	PALLD_uc003iru.2_Missense_Mutation_p.G612E|PALLD_uc003irv.2_Missense_Mutation_p.G230E	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	612					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GAAACGAACGGAGTCCATCCC	0.493									Pancreatic_Cancer_Familial_Clustering_of				14	52					0	0	0.001855	0	0
GALNTL6	442117	broad.mit.edu	37	4	173852374	173852374	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:173852374G>A	uc003isv.2	+	9	1840	c.1104G>A	c.(1102-1104)AGG>AGA	p.R368R		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	368	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						ATATCTACAGGAAGTACGTTC	0.423													10	103					0	0	0.008291	0	0
ODZ3	55714	broad.mit.edu	37	4	183594198	183594198	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:183594198T>A	uc003ivd.1	+	6	1189	c.1152T>A	c.(1150-1152)GAT>GAA	p.D384E		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	384	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ACACCATAGATTCCGGAGAAC	0.358													6	5					0	0	0.001168	0	0
ODZ3	55714	broad.mit.edu	37	4	183600924	183600924	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:183600924C>T	uc003ivd.1	+	7	1469	c.1432C>T	c.(1432-1434)CAT>TAT	p.H478Y	ODZ3_uc003ive.1_5'Flank	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	478	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CGTCAGCCTTCATGAGGCCGG	0.532													19	34					0	0	0.008871	0	0
CCDC110	256309	broad.mit.edu	37	4	186381146	186381146	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:186381146T>A	uc003ixu.3	-	6	671	c.595A>T	c.(595-597)AAC>TAC	p.N199Y	CCDC110_uc003ixv.3_Missense_Mutation_p.N162Y|CCDC110_uc011ckt.1_Missense_Mutation_p.N199Y	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	199						nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		CGATAAAAGTTATTATAATTC	0.338													7	23					0	0	0.001984	0	0
KLKB1	3818	broad.mit.edu	37	4	187179221	187179221	+	Missense_Mutation	SNP	G	A	A	rs146525902	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:187179221G>A	uc003iyy.2	+	15	1843	c.1772G>A	c.(1771-1773)CGT>CAT	p.R591H	KLKB1_uc011clc.1_Missense_Mutation_p.R389H|KLKB1_uc011cld.1_Silent_p.A506A	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	591	Peptidase S1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		GGAATGTGGCGTTTGGTGGGC	0.473													13	75					0	0	0.004990	0	0
FAT1	2195	broad.mit.edu	37	4	187549860	187549860	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:187549860A>T	uc003izf.2	-	8	4569	c.4381T>A	c.(4381-4383)TAT>AAT	p.Y1461N		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1461	Extracellular (Potential).|Cadherin 13.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ACAACTTCATACTTTGATGTA	0.348										HNSCC(5;0.00058)			13	31					0	0	0.002450	0	0
TRIML1	339976	broad.mit.edu	37	4	189063546	189063546	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr4:189063546G>A	uc003izm.1	+	3	760	c.645G>A	c.(643-645)GAG>GAA	p.E215E	TRIML1_uc003izn.1_5'Flank	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	215	Potential.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GGAACAATGAGATCAAACTGA	0.448													22	31					0	0	0.002780	0	0
NSUN2	54888	broad.mit.edu	37	5	6600042	6600042	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:6600042C>T	uc003jdu.2	-	19	2366	c.2301G>A	c.(2299-2301)CGG>CGA	p.R767R	NSUN2_uc003jds.2_Silent_p.R213R|NSUN2_uc003jdt.2_Silent_p.R531R|NSUN2_uc011cmk.1_Silent_p.R732R|NSUN2_uc003jdv.2_Silent_p.R531R	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	767						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						GGCCTGCTCACCGGGGTGGAT	0.632													49	102					0	0	0.003610	0	0
CTNND2	1501	broad.mit.edu	37	5	11023081	11023081	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:11023081G>A	uc003jfa.1	-	17	2944	c.2799C>T	c.(2797-2799)GCC>GCT	p.A933A	CTNND2_uc010itt.2_Silent_p.A842A|CTNND2_uc011cmy.1_Silent_p.A596A|CTNND2_uc011cmz.1_Silent_p.A500A|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.A525A	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	933					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GGTCTCGCATGGCGTATTTGC	0.507													19	33					0	0	0.008871	0	0
DNAH5	1767	broad.mit.edu	37	5	13719100	13719100	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13719100C>T	uc003jfd.2	-	72	12432	c.12390G>A	c.(12388-12390)ATG>ATA	p.M4130I	DNAH5_uc003jfc.2_Missense_Mutation_p.M298I	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4130	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTCGGTGGTCATCCAGAGGC	0.473									Kartagener_syndrome				34	69					0	0	0.003271	0	0
DNAH5	1767	broad.mit.edu	37	5	13721305	13721305	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13721305A>C	uc003jfd.2	-	71	12125	c.12083T>G	c.(12082-12084)GTT>GGT	p.V4028G	DNAH5_uc003jfc.2_Missense_Mutation_p.V196G	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4028	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCTAAAATAACACCTTCGGC	0.453									Kartagener_syndrome				24	47					0	0	0.005443	0	0
DNAH5	1767	broad.mit.edu	37	5	13735385	13735385	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13735385G>A	uc003jfd.2	-	68	11658	c.11616C>T	c.(11614-11616)ATC>ATT	p.I3872I	DNAH5_uc003jfc.2_Silent_p.I40I	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3872					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCATGTGCTCGATGATATTAG	0.443									Kartagener_syndrome				7	25					0	0	0.003080	0	0
DNAH5	1767	broad.mit.edu	37	5	13769134	13769134	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13769134C>T	uc003jfd.2	-	58	9874	c.9832G>A	c.(9832-9834)GCC>ACC	p.A3278T	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3278	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAGCAATGGCTTTGTCTTTA	0.468									Kartagener_syndrome				68	144					0	0	0.003610	0	0
DNAH5	1767	broad.mit.edu	37	5	13771003	13771003	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13771003C>T	uc003jfd.2	-	56	9502	c.9460G>A	c.(9460-9462)GAT>AAT	p.D3154N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3154	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCACCCCATCCTGGAAGGAG	0.448									Kartagener_syndrome				27	53					0	0	0.004656	0	0
DNAH5	1767	broad.mit.edu	37	5	13811790	13811790	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13811790C>T	uc003jfd.2	-	44	7415	c.7373G>A	c.(7372-7374)AGC>AAC	p.S2458N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2458					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CATGTTAATGCTCTGTGTGAT	0.443									Kartagener_syndrome				26	40					0	0	0.009535	0	0
DNAH5	1767	broad.mit.edu	37	5	13865927	13865927	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13865927A>T	uc003jfd.2	-	27	4247	c.4205T>A	c.(4204-4206)CTT>CAT	p.L1402H		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1402	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TATTTCAAGAAGCTGAGGATA	0.328									Kartagener_syndrome				15	40					0	0	0.003163	0	0
DNAH5	1767	broad.mit.edu	37	5	13876922	13876922	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13876922G>A	uc003jfd.2	-	22	3309	c.3267C>T	c.(3265-3267)ACC>ACT	p.T1089T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1089	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTATCTCCAAGGTATCTAAAA	0.299									Kartagener_syndrome				18	53					0	0	0.006122	0	0
DNAH5	1767	broad.mit.edu	37	5	13920635	13920635	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13920635C>T	uc003jfd.2	-	6	794	c.752G>A	c.(751-753)GGA>GAA	p.G251E	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	251	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCTATTTTTCCCAAAGTCTC	0.393									Kartagener_syndrome				37	84					0	0	0.006230	0	0
DNAH5	1767	broad.mit.edu	37	5	13920673	13920673	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13920673C>T	uc003jfd.2	-	6	756	c.714G>A	c.(712-714)ACG>ACA	p.T238T	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	238	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAAGTAGTCCGTAGGTTCCT	0.353									Kartagener_syndrome				25	67					0	0	0.003330	0	0
DNAH5	1767	broad.mit.edu	37	5	13923469	13923469	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13923469C>T	uc003jfd.2	-	4	400	c.358G>A	c.(358-360)GAT>AAT	p.D120N	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	120	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAGCCACATCGTTTCCCTCG	0.458									Kartagener_syndrome				44	111					0	0	0.007835	0	0
DNAH5	1767	broad.mit.edu	37	5	13923478	13923478	+	Missense_Mutation	SNP	C	T	T	rs116128702	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:13923478C>T	uc003jfd.2	-	4	391	c.349G>A	c.(349-351)GAG>AAG	p.E117K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	117	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCGTTTCCCTCGGTCACGAAC	0.448									Kartagener_syndrome				60	87					0	0	0.003610	0	0
ANKH	56172	broad.mit.edu	37	5	14711411	14711411	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:14711411C>G	uc003jfm.3	-	12	1705	c.1374G>C	c.(1372-1374)AAG>AAC	p.K458N	ANKH_uc003jfl.3_Missense_Mutation_p.K171N	NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	458	Cytoplasmic (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						CATTCTCCATCTTCTTTTTCT	0.552													49	127					0	0	0.003610	0	0
CDH18	1016	broad.mit.edu	37	5	19612677	19612677	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:19612677C>T	uc003jgc.2	-	5	1054	c.677G>A	c.(676-678)AGA>AAA	p.R226K	CDH18_uc003jgd.2_Missense_Mutation_p.R226K|CDH18_uc011cnm.1_Missense_Mutation_p.R226K	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	226	Extracellular (Potential).|Cadherin 2.			R -> G (in Ref. 4; AAH31051).	adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TCTGGCTTCTCTGTCCATGTT	0.383													15	28					0	0	0.004007	0	0
PRDM9	56979	broad.mit.edu	37	5	23526506	23526506	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:23526506C>T	uc003jgo.2	+	11	1491	c.1309C>T	c.(1309-1311)CAG>TAG	p.Q437*		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	437					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GGATCAGAATCAGGAGCAGCA	0.468										HNSCC(3;0.000094)			17	60					0	0	0.004990	0	0
CDH10	1008	broad.mit.edu	37	5	24491745	24491745	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:24491745G>A	uc003jgr.1	-	11	2148	c.1816C>T	c.(1816-1818)CCT>TCT	p.P606S	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	606	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGGCCGGCAGGGAGGAGCAGG	0.527										HNSCC(23;0.051)			24	73					0	0	0.004656	0	0
PDZD2	23037	broad.mit.edu	37	5	31983420	31983420	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:31983420G>A	uc003jhl.2	+	3	1024	c.636G>A	c.(634-636)AAG>AAA	p.K212K	PDZD2_uc003jhm.2_Silent_p.K212K|PDZD2_uc011cnx.1_Silent_p.K38K	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	212					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTGCGAAAAAGGGGAAACGAA	0.537													35	81					0	0	0.004289	0	0
PDZD2	23037	broad.mit.edu	37	5	32088468	32088468	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:32088468G>A	uc003jhl.2	+	20	5302	c.4914G>A	c.(4912-4914)CCG>CCA	p.P1638P	PDZD2_uc003jhm.2_Silent_p.P1638P	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1638					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						ACAGCACTCCGAGAGAGTCGG	0.577													44	92					0	0	0.009718	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33561138	33561138	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:33561138C>T	uc003jia.1	-	20	4282	c.4119G>A	c.(4117-4119)TGG>TGA	p.W1373*	ADAMTS12_uc010iuq.1_Nonsense_Mutation_p.W1288*	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1373	TSP type-1 6.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TTACCTTGCTCCAGTTTCCCA	0.507										HNSCC(64;0.19)			55	85					0	0	0.003610	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049436	36049436	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:36049436G>A	uc003jjz.1	-	4	491	c.398C>T	c.(397-399)TCC>TTC	p.S133F	UGT3A2_uc011cos.1_Missense_Mutation_p.S99F|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	133	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ATTCTTTAAGGAATCCATGAT	0.348													16	33					0	0	0.003163	0	0
C5orf42	65250	broad.mit.edu	37	5	37181013	37181013	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:37181013G>A	uc011cpa.1	-	27	5747	c.5516C>T	c.(5515-5517)CCA>CTA	p.P1839L	C5orf42_uc011coy.1_Missense_Mutation_p.P340L|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P914L	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1839										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			AGTTCCACCTGGAGTTGCTAC	0.403													11	28					0	0	0.001368	0	0
GDNF	2668	broad.mit.edu	37	5	37816031	37816031	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:37816031A>C	uc011cpi.1	-	3	558	c.358T>G	c.(358-360)TTA>GTA	p.L120V	GDNF_uc011cpc.1_Missense_Mutation_p.L42V|GDNF_uc011cpd.1_Missense_Mutation_p.L68V|GDNF_uc011cpe.1_Missense_Mutation_p.L94V|GDNF_uc011cpf.1_Missense_Mutation_p.L94V|GDNF_uc011cpg.1_Missense_Mutation_p.L137V|GDNF_uc011cph.1_Missense_Mutation_p.L111V	NM_000514	NP_000505	P39905	GDNF_HUMAN	glial cell derived neurotrophic factor isoform 1	120					adult locomotory behavior|anti-apoptosis|axon guidance|branching involved in ureteric bud morphogenesis|enteric nervous system development|mRNA stabilization|negative regulation of neuron apoptosis|neural crest cell migration|peristalsis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of dopamine secretion|positive regulation of monooxygenase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of ureteric bud formation|postganglionic parasympathetic nervous system development|regulation of dopamine uptake|signal transduction|sympathetic nervous system development	extracellular region	growth factor activity|protein homodimerization activity				0	all_lung(31;0.00118)					ATTGCAGTTAAGACACAACCC	0.512													25	97					0	0	0.003330	0	0
EGFLAM	133584	broad.mit.edu	37	5	38431283	38431283	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:38431283G>A	uc003jlc.1	+	15	2383	c.2059G>A	c.(2059-2061)GAA>AAA	p.E687K	EGFLAM_uc003jlb.1_Missense_Mutation_p.E687K|EGFLAM_uc003jle.1_Missense_Mutation_p.E453K|EGFLAM_uc003jlf.1_Missense_Mutation_p.E53K	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	687	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CCACAGGAGTGAAGATCCCCT	0.299													12	17					0	0	0.000978	0	0
LIFR	3977	broad.mit.edu	37	5	38481743	38481743	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:38481743C>T	uc010ive.1	-	20	3580	c.3248G>A	c.(3247-3249)GGA>GAA	p.G1083E	LIFR_uc003jli.2_Missense_Mutation_p.G1083E	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	1083	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					GGACCACCCTCCTCCATTAGA	0.408			T	PLAG1	salivary adenoma								46	80					0	0	0.003610	0	0
LIFR	3977	broad.mit.edu	37	5	38506097	38506097	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:38506097G>T	uc010ive.1	-	9	1533	c.1201C>A	c.(1201-1203)CCA>ACA	p.P401T	LIFR_uc003jli.2_Missense_Mutation_p.P401T	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	401	Fibronectin type-III 2.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TCTTGATTTGGAAGCATTTGA	0.289			T	PLAG1	salivary adenoma								24	70					2.98393e-07	3.31397e-07	0.002780	1	0
LIFR	3977	broad.mit.edu	37	5	38506159	38506159	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:38506159A>G	uc010ive.1	-	9	1471	c.1139T>C	c.(1138-1140)GTT>GCT	p.V380A	LIFR_uc003jli.2_Missense_Mutation_p.V380A	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	380	Fibronectin type-III 2.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TTTAAGTCTAACATATTTTCC	0.274			T	PLAG1	salivary adenoma								12	35					0	0	0.000978	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000800	41000800	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:41000800G>A	uc003jmj.3	-	38	4820	c.4330C>T	c.(4330-4332)CCC>TCC	p.P1444S	HEATR7B2_uc003jmi.3_Missense_Mutation_p.P999S	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1444							binding			ovary(6)|central_nervous_system(2)	8						TTGGGGTTGGGATCCCAAAGG	0.483													8	20					0	0	0.003080	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41018804	41018804	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:41018804C>T	uc003jmj.3	-	26	3152	c.2662G>A	c.(2662-2664)GAA>AAA	p.E888K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E443K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	888							binding			ovary(6)|central_nervous_system(2)	8						TTAAACATTTCTTGACAGTCC	0.398													17	40					0	0	0.004990	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41051193	41051193	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:41051193C>T	uc003jmj.3	-	13	1721	c.1231_splice	c.e13-1	p.E411_splice	HEATR7B2_uc003jmi.3_Splice_Site	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2								binding			ovary(6)|central_nervous_system(2)	8						CTGGTTTCTCCTTTAAGAAAG	0.433													3	10					0	0	0.004672	0	0
C6	729	broad.mit.edu	37	5	41143057	41143058	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:41143057_41143058CC>TT	uc003jmk.2	-	18	2884_2885	c.2674_2675GG>AA	c.(2674-2676)GGA>AAA	p.G892K	C6_uc003jml.1_Missense_Mutation_p.G892K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	892	Complement control factor I module 2.|C5b-binding domain.|Kazal-like 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GAGTTGGTTTCCACCCTTGAAG	0.441													26	44					0	0	0.004672	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382633	41382633	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:41382633G>A	uc003jmm.1	-	2	209	c.107C>T	c.(106-108)TCT>TTT	p.S36F		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	36	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGAATCATGAGACCCTAGGAG	0.463													21	39					0	0	0.010504	0	0
FBXO4	26272	broad.mit.edu	37	5	41941382	41941382	+	Nonstop_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:41941382G>T	uc003jmq.2	+	7	1219	c.1163G>T	c.(1162-1164)TGA>TTA	p.*388L	FBXO4_uc003jmr.2_3'UTR	NM_012176	NP_036308	Q9UKT5	FBX4_HUMAN	F-box only protein 4 isoform 1	388					positive regulation of protein ubiquitination|protein polyubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|telomere maintenance|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding|protein homodimerization activity|ubiquitin-protein ligase activity			liver(1)	1		Lung NSC(810;4.15e-05)|Breast(839;0.00093)|Ovarian(839;0.00965)|Myeloproliferative disorder(839;0.0255)|all_neural(839;0.0604)				CGTGCAAGATGATTCTCTTTT	0.408													13	40					6.72482e-11	7.47996e-11	0.003163	1	0
ZNF131	7690	broad.mit.edu	37	5	43174766	43174766	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:43174766C>T	uc011cpw.1	+	7	1439	c.1403C>T	c.(1402-1404)TCA>TTA	p.S468L	ZNF131_uc003jnj.3_Missense_Mutation_p.S189L|ZNF131_uc003jnk.2_Missense_Mutation_p.S434L|ZNF131_uc003jnn.3_Missense_Mutation_p.S189L|ZNF131_uc003jnl.1_Intron|ZNF131_uc010ivm.1_Intron	NM_003432	NP_003423	P52739	ZN131_HUMAN	zinc finger protein 131	468						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCTGTAACATCAATGACTATT	0.428													27	55					0	0	0.007291	0	0
HCN1	348980	broad.mit.edu	37	5	45262081	45262081	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:45262081G>A	uc003jok.2	-	8	2640	c.2615C>T	c.(2614-2616)TCC>TTC	p.S872F		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	872	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TAAGACTGAGGAAGATTCTCT	0.512													42	112					0	0	0.002852	0	0
EMB	133418	broad.mit.edu	37	5	49699028	49699028	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:49699028C>T	uc003jom.2	-	6	1110	c.861G>A	c.(859-861)AAG>AAA	p.K287K	EMB_uc010ivq.2_Silent_p.K81K|EMB_uc003jol.2_Silent_p.K218K|EMB_uc011cpy.1_Silent_p.K237K|EMB_uc010ivr.2_Silent_p.K233K	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	287	Cytoplasmic (Potential).					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				GCTTCTTTTTCTTTTGTGTGT	0.328													8	27					0	0	0.008291	0	0
EMB	133418	broad.mit.edu	37	5	49724062	49724062	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:49724062C>T	uc003jom.2	-	2	362	c.113_splice	c.e2-1	p.D38_splice	EMB_uc011cpy.1_Splice_Site|EMB_uc010ivr.2_Splice_Site_p.D38_splice	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor							integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				AAAGGCGAATCTATAAGAGAA	0.328													13	35					0	0	0.001855	0	0
ISL1	3670	broad.mit.edu	37	5	50685493	50685493	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:50685493C>T	uc003jor.2	+	4	1040	c.492C>T	c.(490-492)TCC>TCT	p.S164S		NM_002202	NP_002193	P61371	ISL1_HUMAN	islet-1	164					generation of precursor metabolites and energy|multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3		Lung NSC(810;0.000845)|Breast(144;0.0411)				AGCCCATCTCCGCCAGGCAGC	0.527													7	19					0	0	0.003080	0	0
CDC20B	166979	broad.mit.edu	37	5	54439467	54439467	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:54439467G>A	uc003jpo.1	-	4	535	c.360C>T	c.(358-360)TCC>TCT	p.S120S	CDC20B_uc003jpn.1_Silent_p.S120S|CDC20B_uc010ivu.1_Silent_p.S120S|CDC20B_uc010ivv.1_Silent_p.S120S|CDC20B_uc003jpp.2_RNA	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	120											0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			GTTCTTTGCGGGATCCTACAA	0.408													15	29					0	0	0.004007	0	0
PLK2	10769	broad.mit.edu	37	5	57755647	57755647	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:57755647G>A	uc003jrn.2	-	1	267	c.140C>T	c.(139-141)TCC>TTC	p.S47F	PLK2_uc011cql.1_5'Flank	NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	47					positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		TTGCGCCTGGGACTGAGGTGG	0.672													11	30					0	0	0.000978	0	0
HTR1A	3350	broad.mit.edu	37	5	63256778	63256778	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:63256778C>T	uc011cqt.1	-	1	769	c.769G>A	c.(769-771)GAG>AAG	p.E257K		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	257	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CTCCCCGACTCTCCATTCACA	0.652													26	67					0	0	0.003330	0	0
CWC27	10283	broad.mit.edu	37	5	64267545	64267545	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:64267545C>T	uc003jtn.1	+	12	1277	c.1058C>T	c.(1057-1059)CCA>CTA	p.P353L	CWC27_uc010iwt.1_Missense_Mutation_p.P353L	NM_005869	NP_005860	Q6UX04	CWC27_HUMAN	serologically defined colon cancer antigen 10	353	Potential.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity				0						GAAGCCCCTCCAGATGGTGCT	0.403													20	61					0	0	0.008871	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64483905	64483905	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:64483905C>T	uc003jtp.2	-	22	3662	c.2848G>A	c.(2848-2850)GAA>AAA	p.E950K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	950	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GGCTCTTTTTCGACAGGCCGG	0.507													54	98					0	0	0.003610	0	0
MAST4	375449	broad.mit.edu	37	5	66459555	66459555	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:66459555G>A	uc003jut.1	+	28	4049	c.3981G>A	c.(3979-3981)CGG>CGA	p.R1327R	MAST4_uc003juw.2_Silent_p.R1255R|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1519						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CAGTCTCCCGGAAGGTGGGCC	0.652													6	15					0	0	0.001168	0	0
CD180	4064	broad.mit.edu	37	5	66480226	66480226	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:66480226C>T	uc003juy.2	-	3	593	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	149	Extracellular (Potential).				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		TCCAAGTTTTCCAGATTGTGC	0.418													48	94					0	0	0.003610	0	0
NAIP	4671	broad.mit.edu	37	5	70308419	70308419	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:70308419G>A	uc003kar.1	-	4	1042	c.324C>T	c.(322-324)GGC>GGT	p.G108G	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Silent_p.G108G|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	108	BIR 1.				anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		GTCTCGTGAGGCCGGCACCAA	0.498													23	42					0	0	0.003330	0	0
BDP1	55814	broad.mit.edu	37	5	70805966	70805966	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:70805966G>A	uc003kbp.1	+	17	3310	c.3047G>A	c.(3046-3048)GGA>GAA	p.G1016E	BDP1_uc003kbn.1_Missense_Mutation_p.G1016E|BDP1_uc003kbo.2_Missense_Mutation_p.G1016E	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1016	4.|9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AACGCAACTGGAAGAGAGAGT	0.428													26	60					0	0	0.007291	0	0
RGNEF	64283	broad.mit.edu	37	5	73045798	73045798	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:73045798C>T	uc011csq.1	+	2	181	c.170C>T	c.(169-171)TCC>TTC	p.S57F	RGNEF_uc003kcx.2_Missense_Mutation_p.S57F|RGNEF_uc003kcy.1_Missense_Mutation_p.S57F|RGNEF_uc010izf.2_Missense_Mutation_p.S57F	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	57					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		GTTCTCCAGTCCAGCGTCCCA	0.493													35	72					0	0	0.006230	0	0
RGNEF	64283	broad.mit.edu	37	5	73069757	73069757	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:73069757C>T	uc011csq.1	+	4	564	c.553C>T	c.(553-555)CTC>TTC	p.L185F	RGNEF_uc003kcx.2_Missense_Mutation_p.L185F|RGNEF_uc003kcy.1_Missense_Mutation_p.L185F|RGNEF_uc010izf.2_Missense_Mutation_p.L185F	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	185					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		CTTCTTGTGTCTCCCGGGGGG	0.502													7	11					0	0	0.004482	0	0
RGNEF	64283	broad.mit.edu	37	5	73163826	73163826	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:73163826C>A	uc011csq.1	+	18	2289	c.2278C>A	c.(2278-2280)CCA>ACA	p.P760T	RGNEF_uc003kcx.2_Missense_Mutation_p.P760T|RGNEF_uc010izf.2_Missense_Mutation_p.P760T|RGNEF_uc011csr.1_Missense_Mutation_p.P447T	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	760					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		CAGAAGTGTTCCAGGCACCAC	0.542													8	20					0.00621372	0.006862	0.006214	1	0
GFM2	84340	broad.mit.edu	37	5	74046476	74046476	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:74046476G>A	uc003kdh.1	-	7	751	c.447C>T	c.(445-447)ACC>ACT	p.T149T	GFM2_uc003kdi.1_Silent_p.T149T|GFM2_uc010izj.1_Silent_p.T181T|GFM2_uc010izk.1_RNA|GFM2_uc003kdj.1_Silent_p.T149T|GFM2_uc010izl.1_Silent_p.T107T	NM_032380	NP_115756	Q969S9	RRF2M_HUMAN	mitochondrial elongation factor G2 isoform 1	149					mitochondrial translation|ribosome disassembly	mitochondrion	GTP binding|GTPase activity				0		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Breast(144;0.231)		OV - Ovarian serous cystadenocarcinoma(47;1.86e-56)		CAACCTCCAAGGTAAAGTCCA	0.318													25	47					0	0	0.008361	0	0
F2RL1	2150	broad.mit.edu	37	5	76128722	76128722	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:76128722T>A	uc003keo.2	+	2	465	c.290T>A	c.(289-291)CTG>CAG	p.L97Q		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	97	Helical; Name=1; (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		GGCATGGCCCTGTGGGTCTTT	0.488													195	444					0	0	0.003610	0	0
S100Z	170591	broad.mit.edu	37	5	76173556	76173556	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:76173556G>A	uc003kep.1	+	4	529	c.199G>A	c.(199-201)GAC>AAC	p.D67N	S100Z_uc003keq.3_Missense_Mutation_p.D67N	NM_130772	NP_570128	Q8WXG8	S100Z_HUMAN	S100 calcium binding protein Z	67	2; high affinity.|EF-hand 2.						calcium ion binding			ovary(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;8.91e-51)|Epithelial(54;5.43e-45)|all cancers(79;1.82e-40)		TGCCAATAAGGACAACGAAGT	0.398													164	322					0	0	0.003610	0	0
HOMER1	9456	broad.mit.edu	37	5	78671949	78671949	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:78671949C>T	uc003kfy.2	-	9	2051	c.948G>A	c.(946-948)CAG>CAA	p.Q316Q	HOMER1_uc010jab.2_3'UTR|HOMER1_uc010jac.2_Silent_p.Q186Q|HOMER1_uc010jad.2_Silent_p.Q142Q	NM_004272	NP_004263	Q86YM7	HOME1_HUMAN	homer 1	316	Potential.				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic density|postsynaptic membrane					0		Lung NSC(167;0.00131)|all_lung(232;0.00151)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.87e-44)|Epithelial(54;7.07e-41)|all cancers(79;5.5e-36)		CTTGTTCATTCTGACTTTTCT	0.383													29	54					0	0	0.009535	0	0
SERINC5	256987	broad.mit.edu	37	5	79441966	79441966	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:79441966G>A	uc003kgj.2	-	11	1314	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	SERINC5_uc003kgk.2_Silent_p.F393F|SERINC5_uc003kgl.2_RNA|SERINC5_uc003kgm.2_Silent_p.F395F|SERINC5_uc011ctj.1_Silent_p.F395F	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1	395	Helical; (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		GGAAGAACACGAAGTGGAAGT	0.488													51	109					0	0	0.003610	0	0
LOC644936	644936	broad.mit.edu	37	5	79595749	79595749	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:79595749G>A	uc010jai.2	-	1	549	c.408C>T	c.(406-408)GAC>GAT	p.D136D		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						TGGCATACAGGTCTTTGTAGA	0.527													9	27					0	0	0.006214	0	0
SPZ1	84654	broad.mit.edu	37	5	79616671	79616671	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:79616671C>T	uc003kgn.2	+	1	882	c.637C>T	c.(637-639)CGT>TGT	p.R213C	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	213	Basic motif (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		TTTGGTAAATCGTTTAGAAGA	0.343													13	19					0	0	0.002450	0	0
RASGRF2	5924	broad.mit.edu	37	5	80363981	80363981	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:80363981G>A	uc003kha.1	+	3	526	c.526G>A	c.(526-528)GAA>AAA	p.E176K	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_5'Flank	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	176	Potential.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CACAGAAATCGAAAGGCTTAA	0.383													16	52					0	0	0.007413	0	0
RASGRF2	5924	broad.mit.edu	37	5	80497237	80497238	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:80497237_80497238GG>AA	uc003kha.1	+	19	2882_2883	c.2882_2883GG>AA	c.(2881-2883)AGG>AAA	p.R961K	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	961					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CCCCAAGAAAGGAAAGCCGCCG	0.411													20	64					0	0	0.004672	0	0
ZCCHC9	84240	broad.mit.edu	37	5	80600775	80600775	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:80600775T>A	uc003khj.2	+	2	332	c.199T>A	c.(199-201)TAC>AAC	p.Y67N	RNU5E_uc011cto.1_Intron|ZCCHC9_uc003khk.3_Missense_Mutation_p.Y67N|ZCCHC9_uc003khi.2_Missense_Mutation_p.Y67N	NM_001131035	NP_001124507	Q8N567	ZCHC9_HUMAN	zinc finger, CCHC domain containing 9	67							nucleic acid binding|zinc ion binding			ovary(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;8.18e-45)|Epithelial(54;2.72e-39)|all cancers(79;7.33e-34)		GAAAAAAGAGTACTTAAATGA	0.368													20	26					0	0	0.008871	0	0
GPR98	84059	broad.mit.edu	37	5	89924421	89924421	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:89924421G>A	uc003kju.2	+	8	1377	c.1281G>A	c.(1279-1281)GGG>GGA	p.G427G	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	427	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GAACCCATGGGAATGTCTCTG	0.403													21	44					0	0	0.001882	0	0
GPR98	84059	broad.mit.edu	37	5	89938791	89938791	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:89938791T>C	uc003kju.2	+	13	2582	c.2486T>C	c.(2485-2487)CTA>CCA	p.L829P	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	829	Extracellular (Potential).|Calx-beta 6.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACGGGAGTACTAGAATTTAAA	0.423													34	81					0	0	0.004878	0	0
GPR98	84059	broad.mit.edu	37	5	89979680	89979680	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:89979680T>C	uc003kju.2	+	28	6038	c.5942T>C	c.(5941-5943)TTT>TCT	p.F1981S	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1981	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATATTCATTTTTTCTGAGAAA	0.403													12	19					0	0	0.000978	0	0
GPR98	84059	broad.mit.edu	37	5	90101266	90101267	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:90101266_90101267CC>TT	uc003kju.2	+	72	14923_14924	c.14827_14828CC>TT	c.(14827-14829)CCA>TTA	p.P4943L	GPR98_uc003kjt.2_Missense_Mutation_p.P2649L|GPR98_uc003kjw.2_Missense_Mutation_p.P604L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4943	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAACATGACCCCAACACTGGGT	0.446													14	53					0	0	0.004672	0	0
POU5F2	134187	broad.mit.edu	37	5	93076970	93076970	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:93076970G>A	uc003kkl.1	-	1	340	c.300C>T	c.(298-300)CTC>CTT	p.L100L	FAM172A_uc010jbd.2_Intron|FAM172A_uc011cuf.1_Intron|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_Intron|FAM172A_uc011cui.1_Intron|FAM172A_uc011cuj.1_Intron	NM_153216	NP_694948	Q8N7G0	PO5F2_HUMAN	POU domain class 5, transcription factor 2	100						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(142;3.87e-05)|all_epithelial(76;4.59e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0415)|all cancers(79;2.03e-19)		AGGGCCCCGGGAGGGCGCCTT	0.637													11	28					0	0	0.000978	0	0
MCTP1	79772	broad.mit.edu	37	5	94353134	94353134	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:94353134C>T	uc003kkx.2	-	2	775	c.775G>A	c.(775-777)GGA>AGA	p.G259R	MCTP1_uc003kkv.2_Missense_Mutation_p.G38R|MCTP1_uc003kkw.2_Missense_Mutation_p.G38R|MCTP1_uc003kkz.2_Intron	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	259	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		TGGTACATTCCGGGATCAGCC	0.378													23	68					0	0	0.003330	0	0
PCSK1	5122	broad.mit.edu	37	5	95734685	95734685	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:95734685C>T	uc003kls.1	-	11	1692	c.1486G>A	c.(1486-1488)GGA>AGA	p.G496R	PCSK1_uc010jbi.1_Missense_Mutation_p.G186R	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	496					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTTTCTTGTCCTTCACAAGCT	0.373													7	23					0	0	0.001984	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147685	100147685	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:100147685A>G	uc003knk.2	-	5	1274	c.946T>C	c.(946-948)TAT>CAT	p.Y316H		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	316	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		TCATCATAATAATGATATTTG	0.358													15	33					0	0	0.003163	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100222291	100222291	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:100222291G>A	uc003knk.2	-	3	587	c.259C>T	c.(259-261)CGT>TGT	p.R87C	ST8SIA4_uc003knl.2_Missense_Mutation_p.R87C	NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	87	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		TCTAAGAAACGAAGTATGTTC	0.388													26	36					0	0	0.003330	0	0
WDR36	134430	broad.mit.edu	37	5	110439611	110439611	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:110439611C>T	uc003kpd.2	+	7	1009	c.892C>T	c.(892-894)CGC>TGC	p.R298C	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	298	WD 3.				response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		AATTTCATTTCGCACAGGTAA	0.299													15	52					0	0	0.004990	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111530295	111530295	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:111530295G>A	uc003kpv.1	-	17	1746	c.1472C>T	c.(1471-1473)TCT>TTT	p.S491F	EPB41L4A_uc003kpp.1_Missense_Mutation_p.S118F	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	491						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TTCTCTATTAGAATTTTCTGA	0.373													5	26					0	0	0.001168	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111595653	111595653	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:111595653G>A	uc003kpv.1	-	8	940	c.666C>T	c.(664-666)TTC>TTT	p.F222F		NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	222	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TTAATCCTAAGAAATACTCAG	0.353													20	42					0	0	0.002299	0	0
FAM170A	340069	broad.mit.edu	37	5	118970014	118970014	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:118970014G>A	uc003ksm.2	+	3	781	c.571G>A	c.(571-573)GAG>AAG	p.E191K	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Missense_Mutation_p.E191K|FAM170A_uc003kso.2_Missense_Mutation_p.E144K	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	191						intracellular	zinc ion binding			skin(1)	1						CAGTGGGGAGGAGAAAGAGCA	0.562													28	86					0	0	0.006320	0	0
ZNF474	133923	broad.mit.edu	37	5	121488390	121488390	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:121488390C>T	uc003ksv.2	+	2	1081	c.705C>T	c.(703-705)TCC>TCT	p.S235S		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	235						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		GCACCCTGTCCCTTCCTATTC	0.522													48	80					0	0	0.003610	0	0
CSNK1G3	1456	broad.mit.edu	37	5	122930761	122930761	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:122930761C>A	uc003ktm.2	+	11	1834	c.1115C>A	c.(1114-1116)TCC>TAC	p.S372Y	CSNK1G3_uc003ktl.2_Missense_Mutation_p.S372Y|CSNK1G3_uc003ktn.2_Intron|CSNK1G3_uc003kto.2_Intron|CSNK1G3_uc011cwr.1_Intron|CSNK1G3_uc011cws.1_Intron|CSNK1G3_uc010jda.2_Intron	NM_004384	NP_004375	Q9Y6M4	KC1G3_HUMAN	casein kinase 1, gamma 3 isoform 1	372					Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity				0		all_cancers(142;0.0156)|Prostate(80;0.0322)|Lung NSC(810;0.245)	KIRC - Kidney renal clear cell carcinoma(527;0.165)|Kidney(363;0.229)	OV - Ovarian serous cystadenocarcinoma(64;0.000121)|Epithelial(69;0.000227)|all cancers(49;0.00176)		GCTTGGGACTCCCAGCAGGCA	0.443													18	59					2.4624e-09	2.73683e-09	0.008871	1	0
ZNF608	57507	broad.mit.edu	37	5	123982551	123982551	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:123982551T>C	uc003ktq.1	-	4	3649	c.3526A>G	c.(3526-3528)AAA>GAA	p.K1176E	ZNF608_uc003ktr.1_Intron|ZNF608_uc003kts.1_Missense_Mutation_p.K1176E|ZNF608_uc003ktt.1_Missense_Mutation_p.K1176E|ZNF608_uc003ktp.1_5'Flank	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	1176						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		TCCTCAGTTTTATTAGGCACT	0.458													48	110					0	0	0.003610	0	0
SLC27A6	28965	broad.mit.edu	37	5	128359404	128359404	+	Splice_Site	SNP	G	A	A	rs141842204		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:128359404G>A	uc003kuy.2	+	7	1651	c.1255_splice	c.e7+1	p.G419_splice	SLC27A6_uc003kuz.2_Splice_Site_p.G419_splice	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid						long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GTGAAAAAAGGTAAGACTTCT	0.274													23	33					0	0	0.004656	0	0
SLC27A6	28965	broad.mit.edu	37	5	128365326	128365326	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:128365326G>A	uc003kuy.2	+	10	2005	c.1609G>A	c.(1609-1611)GAT>AAT	p.D537N	SLC27A6_uc003kuz.2_Missense_Mutation_p.D537N	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	537					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TACATCTTTAGATTTGGAAAA	0.299													18	34					0	0	0.008871	0	0
DDX46	9879	broad.mit.edu	37	5	134102645	134102645	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:134102645G>A	uc003kzw.2	+	3	413	c.245G>A	c.(244-246)CGA>CAA	p.R82Q	DDX46_uc003kzv.1_Intron	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	82	Arg-rich.				mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGCCGAGAGCGAAGAAGATCT	0.488													12	20					0	0	0.000978	0	0
LECT2	3950	broad.mit.edu	37	5	135283183	135283183	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:135283183A>T	uc003lbe.1	-	4	494	c.293T>A	c.(292-294)TTT>TAT	p.F98Y	FBXL21_uc003lbc.2_Intron	NM_002302	NP_002293	O14960	LECT2_HUMAN	leukocyte cell-derived chemotaxin 2 precursor	98					chemotaxis|skeletal system development	cytoplasm|extracellular space				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTTGACACAAAAACCTAAAAG	0.224													10	26					0	0	0.000978	0	0
TRPC7	57113	broad.mit.edu	37	5	135587547	135587547	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:135587547C>T	uc003lbn.1	-	5	1369	c.1366G>A	c.(1366-1368)GAA>AAA	p.E456K	TRPC7_uc010jef.1_Missense_Mutation_p.E393K|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.E387K|TRPC7_uc010jei.1_Missense_Mutation_p.E332K|TRPC7_uc010jej.1_Missense_Mutation_p.E8K	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	457	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCCCAGATTTCCTTGCATTCG	0.542													21	40					0	0	0.003330	0	0
TRPC7	57113	broad.mit.edu	37	5	135610433	135610433	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:135610433G>A	uc003lbn.1	-	3	1056	c.1053C>T	c.(1051-1053)TTC>TTT	p.F351F	TRPC7_uc010jef.1_Intron|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.F282F|TRPC7_uc010jei.1_Intron|TRPC7_uc010jej.1_Intron	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	352	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGACAGCCAGGAATTTCACAG	0.468													13	22					0	0	0.001855	0	0
TRPC7	57113	broad.mit.edu	37	5	135693021	135693021	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:135693021C>T	uc003lbn.1	-	1	55	c.52G>A	c.(52-54)GAG>AAG	p.E18K	TRPC7_uc010jef.1_Missense_Mutation_p.E10K|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.E10K|TRPC7_uc010jei.1_Missense_Mutation_p.E10K|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	19	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CGGCCCTTCTCCCTCAGCGTT	0.597													27	56					0	0	0.005443	0	0
WNT8A	7478	broad.mit.edu	37	5	137423581	137423581	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:137423581G>A	uc003lcd.1	+	4	333	c.328G>A	c.(328-330)GAA>AAA	p.E110K	BRD8_uc003lcc.1_Intron|WNT8A_uc011cyj.1_Missense_Mutation_p.E128K|WNT8A_uc011cyk.1_Missense_Mutation_p.E128K	NM_058244	NP_490645	Q9H1J5	WNT8A_HUMAN	wingless-type MMTV integration site family,	110					brain segmentation|canonical Wnt receptor signaling pathway involved in neural crest cell differentiation|cell migration involved in gastrulation|dorsal/ventral pattern formation|ectoderm development|endoderm development|eye development|hindbrain development|mesodermal cell fate commitment|negative regulation of Wnt receptor signaling pathway|neural crest cell fate commitment|neural plate pattern specification|notochord development|palate development|polarity specification of anterior/posterior axis|polarity specification of proximal/distal axis|positive regulation of fibroblast growth factor receptor signaling pathway|regulation of transcription involved in anterior/posterior axis specification|response to retinoic acid|somitogenesis|spinal cord anterior/posterior patterning|tail morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			ovary(1)|lung(1)|breast(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GGGTGACTTCGAAAACTGTGG	0.483													47	105					0	0	0.003214	0	0
CDC23	8697	broad.mit.edu	37	5	137533900	137533900	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:137533900A>C	uc003lcl.2	-	9	1031	c.1000T>G	c.(1000-1002)TGC>GGC	p.C334G		NM_004661	NP_004652	Q9UJX2	CDC23_HUMAN	cell division cycle protein 23	334	TPR 5.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1 phase of mitotic cell cycle|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase plate congression|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of exit from mitosis	anaphase-promoting complex|cytosol|nucleoplasm	binding|ubiquitin-protein ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			ATTACACAGCACGTTTCTACA	0.259													22	61					0	0	0.010504	0	0
KDM3B	51780	broad.mit.edu	37	5	137726747	137726747	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:137726747C>T	uc003lcy.1	+	8	1626	c.1426C>T	c.(1426-1428)CTC>TTC	p.L476F	KDM3B_uc010jew.1_Missense_Mutation_p.L132F|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	476					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TGGAGCACCTCTCCCTAGTTC	0.443													22	67					0	0	0.002299	0	0
LRRTM2	26045	broad.mit.edu	37	5	138208914	138208914	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:138208914T>C	uc011cyz.1	-	2	1793	c.1336A>G	c.(1336-1338)AAG>GAG	p.K446E	CTNNA1_uc003ldh.2_Intron|CTNNA1_uc011cyx.1_Intron|CTNNA1_uc011cyy.1_Intron|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Intron|LRRTM2_uc010jez.2_RNA|LRRTM2_uc011cza.1_Missense_Mutation_p.K312E|CTNNA1_uc003ldl.2_5'Flank	NM_015564	NP_056379	O43300	LRRT2_HUMAN	leucine rich repeat transmembrane neuronal 2	446	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GGGCAGCACTTCCTGGAGATG	0.423													23	70					0	0	0.002299	0	0
PURA	5813	broad.mit.edu	37	5	139494086	139494086	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:139494086C>T	uc003lfa.2	+	1	379	c.320C>T	c.(319-321)GCC>GTC	p.A107V		NM_005859	NP_005850	Q00577	PURA_HUMAN	purine-rich element binding protein A	107					DNA unwinding involved in replication|DNA-dependent DNA replication initiation	DNA replication factor A complex	double-stranded telomeric DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|single-stranded DNA binding|transcription factor binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGTCAGTGGCCGTGGAGTTC	0.682													4	16					0	0	0.009096	0	0
C5orf53	492311	broad.mit.edu	37	5	139508158	139508158	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:139508158C>T	uc003lfb.1	+	1	2638	c.97C>T	c.(97-99)CCA>TCA	p.P33S		NM_001007189	NP_001007190	A6NJ69	IGIP_HUMAN	IgA-inducing protein precursor	33						extracellular region					0						TGGGAAATCACCATGTGGAAA	0.423													37	66					0	0	0.004289	0	0
SLC4A9	83697	broad.mit.edu	37	5	139747434	139747434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:139747434G>A	uc003lfm.2	+	16	2412	c.2377G>A	c.(2377-2379)GAG>AAG	p.E793K	SLC4A9_uc003lfj.2_Missense_Mutation_p.E769K|SLC4A9_uc011czg.1_Missense_Mutation_p.E706K|SLC4A9_uc003lfl.2_Missense_Mutation_p.E769K|SLC4A9_uc003lfk.2_Missense_Mutation_p.E755K	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	793	Membrane (anion exchange).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTTCGGAGAGAGAGCAGAGC	0.582													11	21					0	0	0.001368	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139884528	139884528	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:139884528C>T	uc003lfs.1	+	16	3251	c.3127C>T	c.(3127-3129)CCT>TCT	p.P1043S	ANKHD1_uc003lfq.1_Missense_Mutation_p.P1062S|ANKHD1_uc003lfr.2_Missense_Mutation_p.P1043S|ANKHD1_uc003lft.1_Missense_Mutation_p.P254S|ANKHD1_uc003lfu.1_Missense_Mutation_p.P523S|ANKHD1_uc003lfv.1_Missense_Mutation_p.P120S	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1043						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGTGTATCCTTCAGTTGA	0.393													26	73					0	0	0.006320	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139893013	139893013	+	Silent	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:139893013A>T	uc003lfs.1	+	24	4390	c.4266A>T	c.(4264-4266)GCA>GCT	p.A1422A	ANKHD1_uc003lfq.1_Silent_p.A1441A|ANKHD1_uc003lfr.2_Silent_p.A1422A|ANKHD1_uc003lft.1_Silent_p.A633A|ANKHD1_uc003lfu.1_Silent_p.A902A|ANKHD1_uc003lfv.1_Silent_p.A499A|ANKHD1-EIF4EBP3_uc011czh.1_Silent_p.A161A|ANKHD1_uc003lfw.2_Silent_p.A60A	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1422						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCAAGCTGCAGAAGCAAATA	0.338													14	29					0	0	0.003163	0	0
APBB3	10307	broad.mit.edu	37	5	139941205	139941205	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:139941205G>A	uc003lgd.1	-	7	1088	c.729C>T	c.(727-729)GCC>GCT	p.A243A	APBB3_uc003lgb.1_Silent_p.A15A|APBB3_uc003lgc.1_Silent_p.A15A|APBB3_uc003lge.1_Silent_p.A236A|APBB3_uc003lgf.1_RNA|APBB3_uc010jfp.1_RNA|APBB3_uc011czi.1_Silent_p.A15A|APBB3_uc010jfq.1_Silent_p.A15A	NM_133172	NP_573418	O95704	APBB3_HUMAN	amyloid beta precursor protein-binding, family	238	PID 1.					actin cytoskeleton|cytoplasm				ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACTGGCAATGGCCTTGGCAG	0.547													32	102					0	0	0.009535	0	0
SLC35A4	113829	broad.mit.edu	37	5	139947248	139947248	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:139947248G>A	uc003lgg.1	+	3	1222	c.494G>A	c.(493-495)GGG>GAG	p.G165E	SLC35A4_uc003lgh.1_Missense_Mutation_p.G165E	NM_080670	NP_542401	Q96G79	S35A4_HUMAN	solute carrier family 35, member A4	165	Leu-rich.					Golgi membrane|integral to membrane	sugar:hydrogen symporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAAGTTCCCGGGAACACCCTT	0.647													16	32					0	0	0.004007	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175844	140175844	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140175844C>T	uc003lhd.2	+	1	1401	c.1295C>T	c.(1294-1296)TCG>TTG	p.S432L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.S432L|PCDHA2_uc011czy.1_Missense_Mutation_p.S432L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	432	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGGGGGCTCGCCTTCACTG	0.622													37	88					0	0	0.003271	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182268	140182268	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140182268G>A	uc003lhf.2	+	1	1486	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.E496K	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	496	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCGCTGGTGGAACGGCGGGT	0.677													34	58					0	0	0.003610	0	0
PCDHA3	56145	broad.mit.edu	37	5	140183094	140183094	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140183094C>T	uc003lhf.2	+	1	2312	c.2312C>T	c.(2311-2313)GCT>GTT	p.A771V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.A771V	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	771	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACCTCATGGCTTTTAGCCCT	0.542													34	60					0	0	0.003755	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188271	140188271	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140188271G>A	uc003lhi.2	+	1	1600	c.1499G>A	c.(1498-1500)GGG>GAG	p.G500E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.G500E|PCDHA4_uc011daa.1_Missense_Mutation_p.G500E	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	500	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCGGGTAGGGGAGCGCGCG	0.657													14	30					0	0	0.002450	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188286	140188286	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140188286C>T	uc003lhi.2	+	1	1615	c.1514C>T	c.(1513-1515)TCG>TTG	p.S505L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.S505L|PCDHA4_uc011daa.1_Missense_Mutation_p.S505L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	505	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGCGCTGTCGAGCTACGTT	0.657													23	41					0	0	0.002299	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202749	140202749	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140202749G>A	uc003lhl.2	+	1	1389	c.1389G>A	c.(1387-1389)GTG>GTA	p.V463V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.V463V|PCDHA5_uc003lhj.1_Silent_p.V463V	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	463	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCGTGTTCGTGAAGGAGAACA	0.662													26	71					0	0	0.003954	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208831	140208831	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140208831G>A	uc003lho.2	+	1	1182	c.1155G>A	c.(1153-1155)GTG>GTA	p.V385V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.V385V|PCDHA6_uc011dab.1_Silent_p.V385V	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	385	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGGGCAGGTGAACTGCTCGC	0.542													57	127					0	0	0.003610	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214073	140214074	+	Missense_Mutation	DNP	CC	TT	TT	rs141682483		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140214073_140214074CC>TT	uc003lhq.2	+	1	105_106	c.105_106CC>TT	c.(103-108)GTCCCC>GTTTCC	p.P36S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.P36S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	36	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTACTCGGTCCCCGAGGAGGC	0.624													34	69					0	0	0.004672	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215791	140215791	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140215791C>T	uc003lhq.2	+	1	1823	c.1823C>T	c.(1822-1824)TCG>TTG	p.S608L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.S608L	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGGCTTTCGTATGAGTTG	0.637													26	53					0	0	0.003330	0	0
PCDHA8	56140	broad.mit.edu	37	5	140220982	140220983	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140220982_140220983GT>AA	uc003lhs.2	+	1	76_77	c.76_77GT>AA	c.(76-78)GTG>AAG	p.V26K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.V26K	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	26					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCCTGGAAGGTGGGGAGCGGC	0.609													22	43					0	0	0.004672	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222087	140222087	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140222087C>T	uc003lhs.2	+	1	1181	c.1181C>T	c.(1180-1182)CCC>CTC	p.P394L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P394L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	394	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCATGTCCCCTTCAAGCTG	0.567													55	140					0	0	0.003610	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480684	140480684	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140480684G>A	uc003lio.2	+	1	451	c.451G>A	c.(451-453)GTA>ATA	p.V151I	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	151	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCAGGAACAGTAATTCCTTT	0.433													26	80					0	0	0.003330	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481409	140481409	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140481409C>T	uc003lio.2	+	1	1176	c.1176C>T	c.(1174-1176)TTC>TTT	p.F392F	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	392	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCCTTCTTCCTGAAACCAT	0.468													19	50					0	0	0.008871	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558910	140558910	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140558910T>C	uc011dai.1	+	1	1481	c.1295T>C	c.(1294-1296)CTG>CCG	p.L432P	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	432	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCAGGCTGACAACACAT	0.532													29	263					0	0	0.002096	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712561	140712561	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140712561C>T	uc003lji.1	+	1	2310	c.2310C>T	c.(2308-2310)TTC>TTT	p.F770F	PCDHGA1_uc011dan.1_Silent_p.F770F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	770	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTGATTTTCCCCCAGCCCA	0.547													49	98					0	0	0.003610	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724815	140724815	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140724815G>A	uc003ljm.1	+	1	1215	c.1215G>A	c.(1213-1215)GTG>GTA	p.V405V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.V165V|PCDHGA3_uc011dap.1_Silent_p.V405V	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	405	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCGCTTAGTGACGGCCACAT	0.453													22	46					0	0	0.010504	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725259	140725259	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140725259G>A	uc003ljm.1	+	1	1659	c.1659G>A	c.(1657-1659)CTG>CTA	p.L553L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.L313L|PCDHGA3_uc011dap.1_Silent_p.L553L	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	553	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTCGTGCTGGACCAGAACG	0.622													59	104					0	0	0.003610	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140741262	140741262	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140741262C>T	uc003ljs.1	+	1	1560	c.1560C>T	c.(1558-1560)TTC>TTT	p.F520F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Silent_p.F520F|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	520	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGCGCCTTCGATCATGAGC	0.662													16	41					0	0	0.006122	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140744132	140744132	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140744132C>T	uc003lju.1	+	1	235	c.235C>T	c.(235-237)CCG>TCG	p.P79S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.P79S	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	79	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCCTGAACCCGCGAAGCGG	0.617													20	67					0	0	0.001882	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772779	140772779	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:140772779C>T	uc003lkd.1	+	1	1297	c.399C>T	c.(397-399)TTC>TTT	p.F133F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.F133F	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	133	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCCAAAATTCCAGGTCGAAG	0.423													23	59					0	0	0.002780	0	0
KCTD16	57528	broad.mit.edu	37	5	143586873	143586873	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:143586873C>T	uc003lnm.1	+	3	1225	c.596C>T	c.(595-597)TCC>TTC	p.S199F	KCTD16_uc003lnn.1_Missense_Mutation_p.S199F	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	199						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			GGAAGGATTTCCTTGGCAAAA	0.468													24	35					0	0	0.002299	0	0
GRXCR2	643226	broad.mit.edu	37	5	145252312	145252312	+	Nonsense_Mutation	SNP	G	A	A	rs151087704	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:145252312G>A	uc003lns.1	-	1	220	c.220C>T	c.(220-222)CAG>TAG	p.Q74*		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	74											0						GAGCACATCTGGGGCCTGGGG	0.512													34	71					0	0	0.002836	0	0
PPP2R2B	5521	broad.mit.edu	37	5	146077636	146077636	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:146077636G>A	uc003loe.2	-	3	765	c.240C>T	c.(238-240)TTC>TTT	p.F80F	PPP2R2B_uc010jgm.2_Silent_p.F69F|PPP2R2B_uc003log.3_Silent_p.F80F|PPP2R2B_uc003lof.3_Silent_p.F80F|PPP2R2B_uc003loi.3_Silent_p.F83F|PPP2R2B_uc003loh.3_Silent_p.F80F|PPP2R2B_uc003loj.3_Silent_p.F60F|PPP2R2B_uc003lok.3_Silent_p.F69F|PPP2R2B_uc011dbu.1_Silent_p.F86F|PPP2R2B_uc011dbv.1_Silent_p.F138F	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	80					apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCAGGTAATCGAACTCGGGTT	0.383													55	107					0	0	0.003610	0	0
SPINK13	153218	broad.mit.edu	37	5	147661795	147661795	+	Splice_Site	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:147661795G>A	uc003lpc.2	+	4	298	c.236_splice	c.e4+1	p.R79_splice	uc003lpb.1_Intron|SPINK13_uc010jgt.2_Splice_Site	NM_001040129	NP_001035218	Q1W4C9	ISK13_HUMAN	serine PI Kazal type 5-like 3 precursor							extracellular region	serine-type endopeptidase inhibitor activity				0						ttgaacagaggtaagttcaga	0.234													16	28					0	0	0.003163	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149212371	149212371	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:149212371G>A	uc003lrc.2	+	5	777	c.735G>A	c.(733-735)AAG>AAA	p.K245K	PPARGC1B_uc003lrb.1_Silent_p.K245K|PPARGC1B_uc003lrd.2_Silent_p.K206K|PPARGC1B_uc003lrf.2_Silent_p.K224K|PPARGC1B_uc003lre.1_Silent_p.K224K	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	245					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TCCCTGCCAAGGAGGACAAGG	0.677													17	50					0	0	0.004990	0	0
TIGD6	81789	broad.mit.edu	37	5	149375197	149375197	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:149375197T>C	uc003lri.2	-	2	1477	c.715A>G	c.(715-717)AAG>GAG	p.K239E	TIGD6_uc003lrj.2_Missense_Mutation_p.K239E	NM_030953	NP_112215	Q17RP2	TIGD6_HUMAN	hypothetical protein LOC81789	239	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TGAATGTTCTTGAGGCAGTGT	0.498													14	32					0	0	0.003163	0	0
NDST1	3340	broad.mit.edu	37	5	149901077	149901077	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:149901077C>T	uc003lsk.3	+	2	763	c.261C>T	c.(259-261)GTC>GTT	p.V87V	NDST1_uc011dcj.1_Silent_p.V87V|NDST1_uc003lsl.2_Silent_p.V87V	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	87	Heparan sulfate N-deacetylase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGTGCTGGTCTTTGTGGAGA	0.662													26	72					0	0	0.004656	0	0
SLC36A1	206358	broad.mit.edu	37	5	150867572	150867572	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:150867572G>A	uc003luc.2	+	11	1405	c.1188G>A	c.(1186-1188)CTG>CTA	p.L396L	GM2A_uc011dcs.1_Intron	NM_078483	NP_510968	Q7Z2H8	S36A1_HUMAN	solute carrier family 36 member 1	396	Extracellular (Potential).				cellular nitrogen compound metabolic process|ion transport	endoplasmic reticulum|integral to membrane|lysosomal membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			skin(1)	1		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)|all_neural(839;0.138)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glycine(DB00145)|L-Alanine(DB00160)	TCCCCCGCCTGGACCTGGTCA	0.612													23	40					0	0	0.003954	0	0
FAT2	2196	broad.mit.edu	37	5	150930330	150930330	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:150930330G>A	uc003lue.3	-	7	4412	c.4399C>T	c.(4399-4401)CTC>TTC	p.L1467F	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1467	Extracellular (Potential).|Cadherin 13.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACTCGCAGGAGCTCTACCCCT	0.532													8	31					0	0	0.004482	0	0
SPARC	6678	broad.mit.edu	37	5	151051159	151051160	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:151051159_151051160GG>AA	uc003luh.2	-	4	328_329	c.304_305CC>TT	c.(304-306)CCA>TTA	p.P102L	GM2A_uc011dcs.1_Intron|SPARC_uc003lug.2_Intron|SPARC_uc003lui.2_Missense_Mutation_p.P102L	NM_003118	NP_003109	P09486	SPRC_HUMAN	secreted protein, acidic, cysteine-rich	102	Kazal-like.				ossification|platelet activation|platelet degranulation|signal transduction	basement membrane|extracellular space|platelet alpha granule lumen	calcium ion binding|collagen binding			central_nervous_system(1)	1		Medulloblastoma(196;0.109)|all_hematologic(541;0.122)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;0.00118)	Becaplermin(DB00102)	AATGGGGGCTGGGCAGCTGGTG	0.589													50	113					0	0	0.004672	0	0
GLRA1	2741	broad.mit.edu	37	5	151234728	151234728	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:151234728C>T	uc003lut.2	-	6	857	c.570G>A	c.(568-570)ACG>ACA	p.T190T	GLRA1_uc003lur.2_Silent_p.T190T|GLRA1_uc003lus.2_Silent_p.T107T	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	190	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGTCATTCATCGTATATCCAA	0.483													37	53					0	0	0.004878	0	0
GRIA1	2890	broad.mit.edu	37	5	153078450	153078450	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:153078450G>A	uc003lva.3	+	10	1634	c.1269G>A	c.(1267-1269)AAG>AAA	p.K423K	GRIA1_uc003luy.3_Silent_p.K423K|GRIA1_uc003luz.3_Silent_p.K328K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.K343K|GRIA1_uc011dcx.1_Silent_p.K354K|GRIA1_uc011dcy.1_Silent_p.K433K|GRIA1_uc011dcz.1_Silent_p.K433K|GRIA1_uc010jia.1_Silent_p.K403K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	423	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGATGCTCAAGAAGAACGCCA	0.517													35	75					0	0	0.008740	0	0
GRIA1	2890	broad.mit.edu	37	5	153175112	153175112	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:153175112G>A	uc003lva.3	+	14	2712	c.2347G>A	c.(2347-2349)GAT>AAT	p.D783N	GRIA1_uc003luy.3_Intron|GRIA1_uc003luz.3_Missense_Mutation_p.D688N|GRIA1_uc011dcv.1_Intron|GRIA1_uc011dcw.1_Intron|GRIA1_uc011dcx.1_Intron|GRIA1_uc011dcy.1_Missense_Mutation_p.D793N|GRIA1_uc011dcz.1_Intron	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	783	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ATGGTGGTACGATAAAGGGGA	0.483													7	17					0	0	0.003080	0	0
FAM114A2	10827	broad.mit.edu	37	5	153372608	153372608	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:153372608G>A	uc003lvb.2	-	14	2034	c.1446C>T	c.(1444-1446)ATC>ATT	p.I482I	FAM114A2_uc003lvc.2_Silent_p.I482I|FAM114A2_uc003lvd.2_Silent_p.I482I|FAM114A2_uc003lve.2_Silent_p.I298I|FAM114A2_uc011dda.1_Silent_p.I412I	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	482							purine nucleotide binding				0						CAATGAGAGAGATCTCTAGCA	0.428													23	71					0	0	0.002780	0	0
GALNT10	55568	broad.mit.edu	37	5	153709265	153709265	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:153709265G>A	uc003lvh.2	+	4	667	c.535G>A	c.(535-537)GAG>AAG	p.E179K	GALNT10_uc003lvg.1_Missense_Mutation_p.E179K|GALNT10_uc010jic.2_RNA|GALNT10_uc010jid.2_Missense_Mutation_p.E82K	NM_198321	NP_938080	Q86SR1	GLT10_HUMAN	GalNAc transferase 10 isoform a	179	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)|all_hematologic(541;0.21)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			GCTGGTCGCCGAGATTGTACT	0.597													12	18					0	0	0.002450	0	0
TIMD4	91937	broad.mit.edu	37	5	156378700	156378700	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:156378700G>A	uc003lwh.2	-	3	559	c.502C>T	c.(502-504)CCA>TCA	p.P168S	TIMD4_uc010jii.2_Missense_Mutation_p.P168S	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	168	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACTGTTGTTGGAAGTGCAGCT	0.527													269	595					0	0	0.003610	0	0
CYFIP2	26999	broad.mit.edu	37	5	156768097	156768097	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:156768097C>T	uc003lwq.2	+	25	2743	c.2605C>T	c.(2605-2607)CCT>TCT	p.P869S	CYFIP2_uc011ddn.1_Missense_Mutation_p.P843S|CYFIP2_uc011ddo.1_Missense_Mutation_p.P673S|CYFIP2_uc003lwr.2_Missense_Mutation_p.P869S|CYFIP2_uc003lws.2_Missense_Mutation_p.P869S|CYFIP2_uc003lwt.2_Missense_Mutation_p.P772S|CYFIP2_uc011ddp.1_Missense_Mutation_p.P603S	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	894					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GACTGCCATTCCTTTCACCCA	0.463													147	350					0	0	0.003610	0	0
C5orf40	408263	broad.mit.edu	37	5	156770210	156770210	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:156770210G>A	uc003lwu.2	-	2	523	c.335C>T	c.(334-336)TCC>TTC	p.S112F	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	112						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CACCCAAAGGGAGATCTGGGG	0.587											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	60					0	0	0.007413	0	0
C5orf40	408263	broad.mit.edu	37	5	156770394	156770394	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:156770394C>T	uc003lwu.2	-	2	339	c.151G>A	c.(151-153)GAG>AAG	p.E51K	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	51	Fibronectin type-III.					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACCTTCTCCTCGTGGTGGAAG	0.547													42	66					0	0	0.002522	0	0
LSM11	134353	broad.mit.edu	37	5	157178438	157178438	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:157178438C>T	uc003lxe.1	+	2	493	c.489C>T	c.(487-489)ATC>ATT	p.I163I		NM_173491	NP_775762	P83369	LSM11_HUMAN	LSM11, U7 small nuclear RNA associated	163					histone mRNA 3'-end processing|S phase of mitotic cell cycle|termination of RNA polymerase II transcription	histone pre-mRNA 3'end processing complex|nucleoplasm|U7 snRNP	protein binding|U7 snRNA binding				0	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATCGCTGTATCCGTGAGGGGG	0.493													20	61					0	0	0.007413	0	0
ATP10B	23120	broad.mit.edu	37	5	160059330	160059330	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:160059330C>T	uc003lym.1	-	13	2273	c.1426G>A	c.(1426-1428)GAG>AAG	p.E476K	ATP10B_uc003lyn.2_Missense_Mutation_p.E34K	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	476	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGGTCCACTCTTCACCATCT	0.537													22	79					0	0	0.002780	0	0
ATP10B	23120	broad.mit.edu	37	5	160063277	160063277	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:160063277G>A	uc003lym.1	-	11	1887	c.1040C>T	c.(1039-1041)CCC>CTC	p.P347L	ATP10B_uc003lyp.2_Missense_Mutation_p.P347L|ATP10B_uc011deg.1_Missense_Mutation_p.P391L|ATP10B_uc003lyn.2_5'Flank|ATP10B_uc003lyo.2_Missense_Mutation_p.P319L	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	347	Extracellular (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACATCGAAGGGAGGGTGTTC	0.512													20	55					0	0	0.001882	0	0
GABRG2	2566	broad.mit.edu	37	5	161524745	161524745	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:161524745G>A	uc003lyz.3	+	4	787	c.429G>A	c.(427-429)GGG>GGA	p.G143G	GABRG2_uc010jjc.2_Silent_p.G143G|GABRG2_uc003lyy.3_Silent_p.G143G|GABRG2_uc011dej.1_Silent_p.G48G	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	143	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		ACATGGTGGGGAAAATCTGGA	0.408													28	53					0	0	0.006320	0	0
WWC1	23286	broad.mit.edu	37	5	167850861	167850861	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:167850861C>T	uc003lzu.2	+	11	1691	c.1598C>T	c.(1597-1599)TCC>TTC	p.S533F	WWC1_uc003lzv.2_Missense_Mutation_p.S533F|WWC1_uc011den.1_Missense_Mutation_p.S533F|WWC1_uc003lzw.2_Missense_Mutation_p.S332F	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	533					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		TCCATGACCTCCCTATCCCCA	0.632													14	28					0	0	0.001855	0	0
WWC1	23286	broad.mit.edu	37	5	167894896	167894896	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:167894896A>G	uc003lzu.2	+	22	3295	c.3202A>G	c.(3202-3204)AGG>GGG	p.R1068G	WWC1_uc003lzv.2_Missense_Mutation_p.R1073G|WWC1_uc011den.1_Missense_Mutation_p.R1074G|WWC1_uc003lzw.2_Missense_Mutation_p.R866G|WWC1_uc010jjf.1_Missense_Mutation_p.R340G	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	1068	Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		CAAGATGATGAGGGCAGCTGC	0.607													26	44					0	0	0.005443	0	0
DOCK2	1794	broad.mit.edu	37	5	169468063	169468063	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:169468063C>T	uc003maf.2	+	37	3750	c.3670C>T	c.(3670-3672)CTG>TTG	p.L1224L	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.L716L	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1224	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAACAGGTACCTGTACAAACT	0.522													16	47					0	0	0.004990	0	0
KCNIP1	30820	broad.mit.edu	37	5	170139870	170139870	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:170139870G>A	uc003mas.2	+	2	603	c.74G>A	c.(73-75)TGG>TAG	p.W25*	KCNIP1_uc003map.2_Intron|KCNIP1_uc003mat.2_Intron|KCNIP1_uc010jjp.2_Intron|KCNIP1_uc010jjq.2_Intron	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	25					detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATCGCCTGGTGGTATTACCAG	0.393													35	58					0	0	0.006230	0	0
KCNIP1	30820	broad.mit.edu	37	5	170145872	170145872	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:170145872C>T	uc003mas.2	+	3	734	c.205C>T	c.(205-207)CGA>TGA	p.R69*	KCNIP1_uc003map.2_Nonsense_Mutation_p.R67*|KCNIP1_uc003mat.2_Nonsense_Mutation_p.R58*|KCNIP1_uc010jjp.2_Nonsense_Mutation_p.R30*|KCNIP1_uc010jjq.2_Nonsense_Mutation_p.R58*	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	69	EF-hand 1; degenerate.				detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGTCCTTTATCGAGGCTTCAA	0.587													14	58					0	0	0.002450	0	0
STK10	6793	broad.mit.edu	37	5	171471913	171471913	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:171471913G>A	uc003mbo.1	-	19	3180	c.2880C>T	c.(2878-2880)TTC>TTT	p.F960F		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	960							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AACTGTAGGGGAAGAACTTGG	0.582													22	58					0	0	0.002299	0	0
CPEB4	80315	broad.mit.edu	37	5	173337594	173337594	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:173337594T>G	uc003mcs.3	+	2	2600	c.1194T>G	c.(1192-1194)AAT>AAG	p.N398K	CPEB4_uc010jju.1_Missense_Mutation_p.N398K|CPEB4_uc010jjv.2_Missense_Mutation_p.N398K|CPEB4_uc011dfg.1_Missense_Mutation_p.N398K|CPEB4_uc003mct.3_Missense_Mutation_p.N16K|CPEB4_uc003mcu.3_Missense_Mutation_p.N16K	NM_030627	NP_085130	Q17RY0	CPEB4_HUMAN	cytoplasmic polyadenylation element binding	398							nucleotide binding|RNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0128)|all_lung(126;0.0202)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GAGCTGAAAATGATACCATTA	0.353													28	65					0	0	0.005443	0	0
C5orf25	375484	broad.mit.edu	37	5	175717911	175717911	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:175717911C>T	uc003mds.3	+	4	1734	c.1327C>T	c.(1327-1329)CAT>TAT	p.H443Y	C5orf25_uc003mdt.3_Intron|C5orf25_uc003mdr.3_Intron|C5orf25_uc011dfk.1_Missense_Mutation_p.H462Y			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	443											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TCCTCCGGTTCATCACCTCTT	0.498													11	18					0	0	0.008291	0	0
CDHR2	54825	broad.mit.edu	37	5	176003025	176003025	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:176003025G>A	uc003mem.1	+	12	1099	c.1033G>A	c.(1033-1035)GAC>AAC	p.D345N	CDHR2_uc003men.1_Missense_Mutation_p.D345N	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	345	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GAGAGTGATGGACGTCAATGA	0.582													17	26					0	0	0.007413	0	0
DDX41	51428	broad.mit.edu	37	5	176938925	176938925	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:176938925T>C	uc003mho.2	-	17	1757	c.1736A>G	c.(1735-1737)GAG>GGG	p.E579G	DOK3_uc003mhi.3_5'Flank|DOK3_uc003mhj.3_5'Flank|DOK3_uc003mhk.2_5'Flank|DOK3_uc003mhl.2_5'Flank|DDX41_uc003mhm.2_Missense_Mutation_p.E359G|DDX41_uc003mhn.2_Missense_Mutation_p.E448G|DDX41_uc003mhp.2_Missense_Mutation_p.E448G	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	579					apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			ACAGCCGCGCTCTCCTGGGGG	0.637													4	46					0	0	0.009096	0	0
FAM193B	54540	broad.mit.edu	37	5	176958471	176958472	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:176958471_176958472GG>AA	uc003mhs.3	-	7	2576_2577	c.987_988CC>TT	c.(985-990)CTCCGC>CTTTGC	p.R330C	FAM193B_uc003mht.2_5'UTR|FAM193B_uc003mhu.2_Intron|FAM193B_uc003mhv.2_5'UTR|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0						AGCCTCGAGCGGAGCTTCTCCC	0.693													10	8					0	0	0.004672	0	0
MGAT1	4245	broad.mit.edu	37	5	180219617	180219617	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:180219617G>A	uc003mmg.3	-	2	850	c.355C>T	c.(355-357)CGG>TGG	p.R119W	MGAT1_uc010jlf.2_Missense_Mutation_p.R119W|MGAT1_uc010jlg.2_Missense_Mutation_p.R119W|MGAT1_uc003mmh.3_Missense_Mutation_p.R119W|MGAT1_uc010jlh.2_Missense_Mutation_p.R119W|MGAT1_uc003mmi.3_Missense_Mutation_p.R119W	NM_002406	NP_002397	P26572	MGAT1_HUMAN	mannosyl (alpha-1,3-)-glycoprotein	119	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(1)	1	all_cancers(89;1.11e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00356)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGCAGCGCCGAACAGTGCTG	0.692													8	21					0	0	0.003080	0	0
BTNL3	10917	broad.mit.edu	37	5	180432655	180432655	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr5:180432655T>G	uc003mmr.2	+	8	1312	c.1184T>G	c.(1183-1185)TTT>TGT	p.F395C	BTNL3_uc010jlp.2_Missense_Mutation_p.F180C	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	395	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			AATCCCCATTTTATCAGCCTC	0.488													10	42					0	0	0.000978	0	0
DUSP22	56940	broad.mit.edu	37	6	348244	348244	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:348244C>T	uc003msx.2	+	6	844	c.405C>T	c.(403-405)CTC>CTT	p.L135L	DUSP22_uc011dhn.1_Silent_p.L135L|DUSP22_uc003msy.1_Silent_p.L92L	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	135					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		AGAGACAGCTCCAGGAGTTTG	0.572													18	80					0	0	0.007413	0	0
GMDS	2762	broad.mit.edu	37	6	1742745	1742745	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:1742745C>T	uc003mtq.2	-	8	1037	c.847G>A	c.(847-849)GAA>AAA	p.E283K		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	283					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		TCGACAAATTCCCGGACACTA	0.458													19	38					0	0	0.010504	0	0
MYLK4	340156	broad.mit.edu	37	6	2675297	2675297	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:2675297G>A	uc003mty.3	-	11	1400	c.1103C>T	c.(1102-1104)TCC>TTC	p.S368F	MYLK4_uc003mtx.3_Missense_Mutation_p.S83F	NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	368							ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				ATTGAGTCTGGAGTGGAGCTT	0.473													40	92					0	0	0.003610	0	0
FAM136B	387071	broad.mit.edu	37	6	3045944	3045944	+	Silent	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:3045944T>C	uc011dhr.1	+	1	327	c.327T>C	c.(325-327)GGT>GGC	p.G109G		NM_001012983	NP_001013001			hypothetical protein LOC387071												0	Ovarian(93;0.0386)	all_hematologic(90;0.108)				AGCTGGACGGTTGTGTGACCA	0.483													8	89					0	0	0.004482	0	0
C6orf146	222826	broad.mit.edu	37	6	4069555	4069555	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:4069555A>C	uc003mvx.2	-	7	1242	c.902T>G	c.(901-903)ATT>AGT	p.I301S	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Missense_Mutation_p.I238S	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	301										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				CTCTTTTTGAATAGTCATATG	0.418													23	53					0	0	0.003330	0	0
RREB1	6239	broad.mit.edu	37	6	7211090	7211090	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:7211090C>T	uc003mxc.2	+	7	869	c.479C>T	c.(478-480)CCA>CTA	p.P160L	RREB1_uc010jnw.2_Missense_Mutation_p.P160L|RREB1_uc003mxb.2_Missense_Mutation_p.P160L|RREB1_uc010jnx.2_Missense_Mutation_p.P160L|RREB1_uc003mxd.2_Missense_Mutation_p.P160L	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	160					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				ACAGCCCCTCCATCTCCTCTG	0.483													42	83					0	0	0.008740	0	0
DSP	1832	broad.mit.edu	37	6	7568089	7568089	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:7568089G>A	uc003mxp.1	+	10	1495	c.1216G>A	c.(1216-1218)GAC>AAC	p.D406N	DSP_uc003mxq.1_Missense_Mutation_p.D406N	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	406	Globular 1.|Spectrin 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GTACCCCTGCGACAAGAACAT	0.532													11	27					0	0	0.000978	0	0
DSP	1832	broad.mit.edu	37	6	7586062	7586062	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:7586062C>G	uc003mxp.1	+	24	8846	c.8567C>G	c.(8566-8568)TCT>TGT	p.S2856C	DSP_uc003mxq.1_Missense_Mutation_p.S2257C	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2856	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACAGGGAATTCTTCCTACTCT	0.338													44	127					0	0	0.003610	0	0
BMP6	654	broad.mit.edu	37	6	7845444	7845444	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:7845444C>T	uc003mxu.3	+	2	914	c.736C>T	c.(736-738)CCT>TCT	p.P246S		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	246					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					ATCCCAGATTCCTGAGGGTGA	0.433													32	81					0	0	0.002836	0	0
SYCP2L	221711	broad.mit.edu	37	6	10928656	10928656	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:10928656C>T	uc003mzo.2	+	18	1757	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	SYCP2L_uc011din.1_Intron|SYCP2L_uc010jow.2_Silent_p.F107F	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	487						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			tccctccgttcggggtccctg	0.204													15	39					0	0	0.002450	0	0
HIVEP1	3096	broad.mit.edu	37	6	12125828	12125828	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:12125828C>T	uc003nac.2	+	4	5979	c.5800C>T	c.(5800-5802)CCT>TCT	p.P1934S	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1934					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GCTGGCTTTCCCTAGCCTGAA	0.423													26	63					0	0	0.009535	0	0
HIVEP1	3096	broad.mit.edu	37	6	12161804	12161804	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:12161804C>T	uc003nac.2	+	8	6799	c.6620C>T	c.(6619-6621)CCC>CTC	p.P2207L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2207					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				TCAGCCACACCCTCAGTCACA	0.507													17	34					0	0	0.004990	0	0
JARID2	3720	broad.mit.edu	37	6	15468907	15468907	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:15468907C>A	uc003nbj.2	+	5	872	c.628C>A	c.(628-630)CCC>ACC	p.P210T	JARID2_uc011diu.1_Missense_Mutation_p.P74T|JARID2_uc011div.1_Missense_Mutation_p.P38T|JARID2_uc011diw.1_Missense_Mutation_p.P172T	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	210					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				CCAGTCGACCCCCAGGAAAGG	0.478													26	49					2.65835e-16	2.97038e-16	0.007291	1	0
JARID2	3720	broad.mit.edu	37	6	15496631	15496631	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:15496631C>T	uc003nbj.2	+	7	1419	c.1175C>T	c.(1174-1176)TCC>TTC	p.S392F	JARID2_uc011diu.1_Missense_Mutation_p.S256F|JARID2_uc011div.1_Missense_Mutation_p.S220F|JARID2_uc011diw.1_Missense_Mutation_p.S354F	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	392					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				CAGGTGCTATCCCTCGGGGGG	0.572													28	81					0	0	0.008361	0	0
JARID2	3720	broad.mit.edu	37	6	15511546	15511546	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:15511546G>A	uc003nbj.2	+	13	3110	c.2866G>A	c.(2866-2868)GAG>AAG	p.E956K	JARID2_uc011div.1_Missense_Mutation_p.E784K	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	956	JmjC.				central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				TCCTGCTGAGGAGGAGAACAA	0.572													35	77					0	0	0.004878	0	0
TPMT	7172	broad.mit.edu	37	6	18132364	18132364	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:18132364C>T	uc003ncm.2	-	8	780	c.625G>A	c.(625-627)GGT>AGT	p.G209S		NM_000367	NP_000358	P51580	TPMT_HUMAN	thiopurine S-methyltransferase	209					xenobiotic metabolic process	cytosol	thiopurine S-methyltransferase activity				0	Ovarian(93;0.016)|Breast(50;0.0245)	all_hematologic(90;0.146)	all cancers(50;0.06)|Epithelial(50;0.0654)		Mercaptopurine(DB01033)	ACAAACTTACCAAACAACCTT	0.259													11	36					0	0	0.001368	0	0
E2F3	1871	broad.mit.edu	37	6	20490506	20490506	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:20490506C>T	uc003nda.2	+	7	1570	c.1243C>T	c.(1243-1245)CCT>TCT	p.P415S		NM_001949	NP_001940	O00716	E2F3_HUMAN	E2F transcription factor 3	415	Transactivation (Potential).				G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(95;0.154)|all_epithelial(95;0.0585)|Breast(50;0.146)|Ovarian(93;0.148)		OV - Ovarian serous cystadenocarcinoma(7;0.0068)|all cancers(50;0.0148)|Epithelial(50;0.0562)			GGACCAAATTCCTTCCAACCT	0.522													168	313					0	0	0.003610	0	0
NRSN1	140767	broad.mit.edu	37	6	24146056	24146056	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:24146056G>A	uc010jpq.1	+	4	707	c.470G>A	c.(469-471)CGA>CAA	p.R157Q		NM_080723	NP_542454	Q8IZ57	NRSN1_HUMAN	neurensin 1	157					nervous system development	growth cone|integral to membrane|neuronal cell body|transport vesicle					0						TTTAAAGAACGAATCGCAGAC	0.493													14	56					0	0	0.002450	0	0
GPLD1	2822	broad.mit.edu	37	6	24475374	24475374	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:24475374T>C	uc003ned.1	-	5	527	c.416A>G	c.(415-417)CAA>CGA	p.Q139R	GPLD1_uc010jpr.1_Missense_Mutation_p.K11E|GPLD1_uc010jps.1_Missense_Mutation_p.Q139R|GPLD1_uc003nee.2_Missense_Mutation_p.Q139R	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	139						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						AAGGAATCCTTGTTCAAGGCC	0.463													35	81					0	0	0.006230	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596353	24596353	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:24596353C>T	uc011djo.1	-	3	786	c.549G>A	c.(547-549)ACG>ACA	p.T183T	KIAA0319_uc011djp.1_Silent_p.T138T|KIAA0319_uc003neh.1_Silent_p.T183T|KIAA0319_uc011djq.1_Silent_p.T174T|KIAA0319_uc011djr.1_Silent_p.T183T	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	183	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GGCCCCAGTCCGTGTACTCGG	0.617													10	22					0	0	0.008291	0	0
SLC17A2	10246	broad.mit.edu	37	6	25917048	25917048	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:25917048G>A	uc011dkb.1	-	7	878	c.795C>T	c.(793-795)CCC>CCT	p.P265P	SLC17A2_uc011dkc.1_Silent_p.P265P|SLC17A2_uc003nfl.2_Silent_p.P265P			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	265					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						TCGCCTTTATGGGGACAGCTC	0.488													17	34					0	0	0.004990	0	0
HIST1H3B	8358	broad.mit.edu	37	6	26031889	26031889	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:26031889C>T	uc003nfs.1	-	1	400	c.400G>A	c.(400-402)GAA>AAA	p.E134K		NM_003537	NP_003528	P68431	H31_HUMAN	histone cluster 1, H3b	134					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						TACGCTCTTTCTCCGCGAATG	0.458													26	48					0	0	0.005443	0	0
HIST1H1E	3008	broad.mit.edu	37	6	26156975	26156975	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:26156975G>A	uc003ngq.2	+	1	417	c.357G>A	c.(355-357)AAG>AAA	p.K119K	HIST1H2BD_uc003ngr.2_5'Flank|HIST1H2BD_uc003ngs.2_5'Flank	NM_005321	NP_005312	P10412	H14_HUMAN	histone cluster 1, H1e	119					nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			large_intestine(1)|ovary(1)	2						CCAAGCCTAAGGCTAAAAAGG	0.647													10	25					0	0	0.008291	0	0
HIST1H3G	8355	broad.mit.edu	37	6	26271574	26271575	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:26271574_26271575AC>CT	uc003nhi.2	-	1	38_39	c.38_39GT>AG	c.(37-39)GGT>GAG	p.G13E	uc003nhj.2_5'Flank|HIST1H2BI_uc003nhk.2_5'Flank	NM_003534	NP_003525	P68431	H31_HUMAN	H3 histone family, member H	13					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0						GCGCTTTGCCACCGGTGGACTT	0.604													13	38					0	0	0.004672	0	0
HIST1H2AK	8330	broad.mit.edu	37	6	27805876	27805876	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:27805876G>A	uc003njs.2	-	1	242	c.242C>T	c.(241-243)CCG>CTG	p.P81L	HIST1H2BN_uc003njt.1_5'Flank|HIST1H2BN_uc003nju.1_5'Flank|HIST1H2BN_uc003njv.2_5'Flank	NM_003510	NP_003501	P0C0S8	H2A1_HUMAN	histone cluster 1, H2ak	81					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding			upper_aerodigestive_tract(1)	1						CAAGTGGCGCGGGATGATGCG	0.632													41	99					0	0	0.009718	0	0
ZKSCAN3	80317	broad.mit.edu	37	6	28333934	28333934	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:28333934G>A	uc003nle.3	+	6	1705	c.1489G>A	c.(1489-1491)GAA>AAA	p.E497K	ZKSCAN3_uc010jrc.2_Missense_Mutation_p.E497K|ZKSCAN3_uc003nlf.3_Missense_Mutation_p.E349K|uc010jrd.2_5'Flank	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	497	C2H2-type 6.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						AGGCCTCATTGAACATCAAAA	0.398													16	32					0	0	0.003163	0	0
GPX5	2880	broad.mit.edu	37	6	28501754	28501755	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:28501754_28501755CC>TT	uc003nll.2	+	5	478_479	c.476_477CC>TT	c.(475-477)CCC>CTT	p.P159L	GPX5_uc003nlm.2_3'UTR|GPX5_uc003nln.2_RNA	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	159					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	TGTCCTCATCCCTCTGAGATTT	0.455													51	137					0	0	0.004672	0	0
TRIM27	5987	broad.mit.edu	37	6	28888011	28888011	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:28888011G>A	uc003nlr.2	-	3	884	c.525C>T	c.(523-525)ACC>ACT	p.T175T	TRIM27_uc003nls.2_Silent_p.T175T|TRIM27_uc003nlt.1_Silent_p.T175T	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	175					cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						TCTCCATCTGGGTTAGGCTCT	0.507			T	RET	papillary thyroid								32	101					0	0	0.003755	0	0
OR2W1	26692	broad.mit.edu	37	6	29012046	29012046	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:29012046T>A	uc003nlw.2	-	1	907	c.907A>T	c.(907-909)AAA>TAA	p.K303*		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CTCATCAGTTTCTTCAGGGCA	0.378													8	18					0	0	0.006214	0	0
HLA-A	3105	broad.mit.edu	37	6	29910549	29910549	+	Missense_Mutation	SNP	G	A	A	rs117205476	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:29910549G>A	uc003nol.2	+	2	89	c.89G>A	c.(88-90)AGG>AAG	p.R30K	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Missense_Mutation_p.R30K|HLA-A_uc003noo.2_Missense_Mutation_p.R30K|HLA-A_uc010jrr.2_Missense_Mutation_p.R30K|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Missense_Mutation_p.R2K|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	30	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CACTCCATGAGGTATTTCTTC	0.721									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			3	19					0	0	0.000602	0	0
TRIM10	10107	broad.mit.edu	37	6	30121774	30121774	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:30121774C>T	uc003npo.3	-	7	1494	c.1418G>A	c.(1417-1419)CGA>CAA	p.R473Q	TRIM10_uc003npn.2_Intron	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	473	B30.2/SPRY.					cytoplasm	zinc ion binding				0						ACTGGACCCTCGGCCCCAGAG	0.547													22	59					0	0	0.002780	0	0
TRIM10	10107	broad.mit.edu	37	6	30128443	30128443	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:30128443G>A	uc003npo.3	-	1	269	c.193C>T	c.(193-195)CGT>TGT	p.R65C	TRIM10_uc003npn.2_Missense_Mutation_p.R65C|TRIM15_uc010jrx.2_5'Flank	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	65						cytoplasm	zinc ion binding				0						CTCCCAGGACGGAAGGGTTCT	0.612													63	174					0	0	0.003610	0	0
GNL1	2794	broad.mit.edu	37	6	30521151	30521151	+	Missense_Mutation	SNP	G	A	A	rs139361425	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:30521151G>A	uc003nqh.2	-	6	1812	c.784C>T	c.(784-786)CGC>TGC	p.R262C	GNL1_uc011dmi.1_Missense_Mutation_p.R124C|GNL1_uc011dmj.1_Missense_Mutation_p.R260C|GNL1_uc011dmk.1_Intron	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	262					response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						TGTGGGGTGCGGGGGTCCCGA	0.567													51	116					0	0	0.003610	0	0
DHX16	8449	broad.mit.edu	37	6	30638993	30638993	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:30638993G>A	uc003nqz.2	-	2	478	c.266C>T	c.(265-267)GCC>GTC	p.A89V	DHX16_uc011dmo.1_Missense_Mutation_p.A29V	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	89					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CTCCAGCAGGGCCCGGGCCTC	0.552													103	223					0	0	0.003610	0	0
MDC1	9656	broad.mit.edu	37	6	30671853	30671853	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:30671853G>A	uc003nrg.3	-	10	5547	c.5107C>T	c.(5107-5109)CCT>TCT	p.P1703S	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.P1310S	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1703	Required for nuclear localization (NLS2).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GTGGTGACAGGAGATTGGAAT	0.567								Other_conserved_DNA_damage_response_genes					43	71					0	0	0.008740	0	0
TUBB	203068	broad.mit.edu	37	6	30690766	30690766	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:30690766C>T	uc003nrl.2	+	3	365	c.238C>T	c.(238-240)CCT>TCT	p.P80S	TUBB_uc003nrk.1_Missense_Mutation_p.P80S|TUBB_uc011dmq.1_Missense_Mutation_p.P8S	NM_178014	NP_821133	P07437	TBB5_HUMAN	tubulin, beta	80					cellular component movement|G2/M transition of mitotic cell cycle|microtubule-based movement|natural killer cell mediated cytotoxicity|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|MHC class I protein binding			ovary(1)	1					Colchicine(DB01394)|Vinblastine(DB00570)|Vincristine(DB00541)|Vinorelbine(DB00361)	TCGCTCAGGTCCTTTTGGCCA	0.428													33	79					0	0	0.005524	0	0
FLOT1	10211	broad.mit.edu	37	6	30698467	30698467	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:30698467A>G	uc003nrm.2	-	10	1107	c.943T>C	c.(943-945)TCT>CCT	p.S315P	FLOT1_uc011dmr.1_Missense_Mutation_p.S267P	NM_005803	NP_005794	O75955	FLOT1_HUMAN	flotillin 1	315						centriolar satellite|endosome|integral to membrane|melanosome|membrane fraction					0						ACCCGCACAGACGCGGCTTCT	0.557													11	274					0	0	0.002450	0	0
VARS2	57176	broad.mit.edu	37	6	30890965	30890965	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:30890965T>C	uc003nsc.1	+	23	2902	c.2270T>C	c.(2269-2271)CTC>CCC	p.L757P	VARS2_uc011dmx.1_Missense_Mutation_p.L757P|VARS2_uc011dmy.1_Missense_Mutation_p.L617P|VARS2_uc011dmz.1_Missense_Mutation_p.L787P|VARS2_uc011dna.1_Missense_Mutation_p.L755P|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Missense_Mutation_p.L195P|VARS2_uc010jsg.1_Missense_Mutation_p.L129P|VARS2_uc010jsh.1_5'UTR	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	757					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						CGCTTTATCCTCAATGCTTTA	0.522													3	118					0	0	0.004672	0	0
CCHCR1	54535	broad.mit.edu	37	6	31122525	31122525	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:31122525G>A	uc003nsr.3	-	4	405	c.282C>T	c.(280-282)ATC>ATT	p.I94I	CCHCR1_uc011dne.1_Silent_p.I94I|CCHCR1_uc003nsq.3_Silent_p.I147I|CCHCR1_uc003nsp.3_Silent_p.I183I|CCHCR1_uc010jsk.1_Silent_p.I94I	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	94					cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						GCTGCCGAACGATCACCTCAG	0.642													12	18					0	0	0.002450	0	0
BAT2	7916	broad.mit.edu	37	6	31599685	31599685	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:31599685C>T	uc003nvb.3	+	16	3484	c.3235C>T	c.(3235-3237)CCC>TCC	p.P1079S	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.P1079S	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1079	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CCCTCCTGCTCCCCGAGGCCG	0.657													10	17					0	0	0.006214	0	0
C2	717	broad.mit.edu	37	6	31896606	31896606	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:31896606G>A	uc003nyf.2	+	3	618	c.354G>A	c.(352-354)GAG>GAA	p.E118E	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Silent_p.E118E|C2_uc010jtk.2_Intron|C2_uc011doq.1_Silent_p.E89E|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	118	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		TCGAGTGTGAGGATGGCTTCA	0.577													131	294					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	31977598	31977598	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:31977598C>T	uc011dpc.1	-	12	2306	c.1397G>A	c.(1396-1398)GGA>GAA	p.G466E		NM_032470	NP_115859	P22105	TENX_HUMAN	tenascin XB isoform 2	4082	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCACCGGCTCCGTTCTGCAT	0.657													33	189					0	0	0.007835	0	0
TNXB	7148	broad.mit.edu	37	6	31977634	31977634	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:31977634G>A	uc011dpc.1	-	12	2270	c.1361C>T	c.(1360-1362)CCC>CTC	p.P454L		NM_032470	NP_115859	P22105	TENX_HUMAN	tenascin XB isoform 2	4070	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTGGGGAAGGGGATCCGCAG	0.701													10	136					0	0	0.004007	0	0
TNXB	7148	broad.mit.edu	37	6	32010368	32010368	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:32010368G>A	uc003nzl.2	-	40	12270	c.12068C>T	c.(12067-12069)CCC>CTC	p.P4023L	TNXB_uc003nzg.1_Missense_Mutation_p.P454L|TNXB_uc003nzh.1_Missense_Mutation_p.P492L	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	4070	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTGGGGAAGGGGATCCGCAG	0.701													34	75					0	0	0.009718	0	0
TNXB	7148	broad.mit.edu	37	6	32037562	32037562	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:32037562G>A	uc003nzl.2	-	15	5557	c.5355C>T	c.(5353-5355)ACC>ACT	p.T1785T		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1867	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGTCACGGTGGTCACCTGCA	0.602													122	308					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32065010	32065010	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:32065010C>T	uc003nzl.2	-	3	822	c.620G>A	c.(619-621)GGC>GAC	p.G207D		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	207	EGF-like 2.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCCAGTGTAGCCGGGAAAGCA	0.667													50	97					0	0	0.003610	0	0
EGFL8	80864	broad.mit.edu	37	6	32135730	32135730	+	Silent	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:32135730A>C	uc003oab.1	+	9	937	c.879A>C	c.(877-879)CGA>CGC	p.R293R	PPT2_uc003nzy.1_RNA|EGFL8_uc003oac.1_Silent_p.R293R	NM_030652	NP_085155	Q99944	EGFL8_HUMAN	NG3 protein precursor	293						extracellular region|integral to membrane	calcium ion binding				0						TCAATCATCGATAAGAAGCCT	0.542													106	275					0	0	0.003610	0	0
B3GALT4	8705	broad.mit.edu	37	6	33246190	33246190	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:33246190C>T	uc003odr.2	+	1	1274	c.994C>T	c.(994-996)CAC>TAC	p.H332Y		NM_003782	NP_003773	O96024	B3GT4_HUMAN	UDP-Gal:betaGlcNAc beta	332	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	ganglioside galactosyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)|breast(1)	2						GCTGACGTCCCACAGGCTGGA	0.627													45	88					0	0	0.003610	0	0
PACSIN1	29993	broad.mit.edu	37	6	34496492	34496492	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:34496492C>T	uc003ojo.2	+	4	500	c.294C>T	c.(292-294)CAC>CAT	p.H98H	PACSIN1_uc003ojp.2_Silent_p.H98H	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	98					endocytosis		protein kinase activity				0						GCGAGCTGCACCAGGAGGTGA	0.552													58	114					0	0	0.003610	0	0
ANKS1A	23294	broad.mit.edu	37	6	35047422	35047422	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:35047422C>A	uc003ojx.3	+	15	2555	c.2413C>A	c.(2413-2415)CTC>ATC	p.L805I	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Missense_Mutation_p.L345I|ANKS1A_uc010jvp.1_Missense_Mutation_p.L179I	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	805	SAM 2.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CGTGAAGAACCTCTGGGAGCT	0.612													17	55					1.02788e-11	1.14461e-11	0.004990	1	0
TCP11	6954	broad.mit.edu	37	6	35089948	35089948	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:35089948C>T	uc003okd.2	-	5	744	c.563G>A	c.(562-564)CGA>CAA	p.R188Q	TCP11_uc003ojz.1_Missense_Mutation_p.R113Q|TCP11_uc003oka.2_Missense_Mutation_p.R113Q|TCP11_uc003okb.2_Missense_Mutation_p.R112Q|TCP11_uc003okc.2_Missense_Mutation_p.R112Q|TCP11_uc011dsu.1_Missense_Mutation_p.R170Q|TCP11_uc011dsv.1_Missense_Mutation_p.R137Q|TCP11_uc011dsw.1_Missense_Mutation_p.R142Q	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	175					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						TGCTTCATCTCGAACTGGTGC	0.478													20	72					0	0	0.010504	0	0
SLC26A8	116369	broad.mit.edu	37	6	35943165	35943165	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:35943165C>T	uc003olm.2	-	10	1385	c.1274G>A	c.(1273-1275)GGA>GAA	p.G425E	SLC26A8_uc003oln.2_Missense_Mutation_p.G425E|SLC26A8_uc003oll.2_Missense_Mutation_p.G320E	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	425	Extracellular (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TTGTCTTCCTCCAGATTTATC	0.338													7	17					0	0	0.003080	0	0
PNPLA1	285848	broad.mit.edu	37	6	36274124	36274124	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:36274124G>A	uc010jwf.2	+	7	1440	c.1440G>A	c.(1438-1440)GTG>GTA	p.V480V	PNPLA1_uc003olw.1_Silent_p.V385V|PNPLA1_uc010jwe.1_Silent_p.V394V	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	480					lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						TGGTTCATGTGAAGGAAACCG	0.493													33	78					0	0	0.004878	0	0
CPNE5	57699	broad.mit.edu	37	6	36714238	36714238	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:36714238A>G	uc003omr.1	-	16	1202	c.1135T>C	c.(1135-1137)TTC>CTC	p.F379L	CPNE5_uc003omp.1_Missense_Mutation_p.F87L|CPNE5_uc010jwn.1_Missense_Mutation_p.F29L|CPNE5_uc003omq.1_Missense_Mutation_p.F29L	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	379	VWFA.									skin(1)	1						AGGGCAGGGAACATCTTGTCA	0.627													21	49					0	0	0.001882	0	0
FTSJD2	23070	broad.mit.edu	37	6	37426561	37426561	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:37426561C>T	uc003ons.2	+	9	1204	c.951C>T	c.(949-951)TCC>TCT	p.S317S	FTSJD2_uc010jwu.2_Silent_p.S261S	NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	317					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ACTCTGCTTCCAGTGAACTCT	0.507													30	56					0	0	0.003271	0	0
ZFAND3	60685	broad.mit.edu	37	6	38029534	38029534	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:38029534C>T	uc003onx.2	+	3	693	c.278C>T	c.(277-279)TCA>TTA	p.S93L		NM_021943	NP_068762	Q9H8U3	ZFAN3_HUMAN	zinc finger, AN1-type domain 3	93							DNA binding|zinc ion binding			ovary(1)	1						AATGTAACTTCACCGAGTAAA	0.488													21	23					0	0	0.001882	0	0
DNAH8	1769	broad.mit.edu	37	6	38877410	38877410	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:38877410C>T	uc003ooe.1	+	63	9579	c.8979C>T	c.(8977-8979)TTC>TTT	p.F2993F	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCTCCTACTTCCTTTCAGACT	0.448													23	59					0	0	0.002780	0	0
DNAH8	1769	broad.mit.edu	37	6	38980349	38980349	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:38980349T>A	uc003ooe.1	+	89	13599	c.12999T>A	c.(12997-12999)TTT>TTA	p.F4333L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATGCTCAGTTTTCTACGTGGA	0.433													60	138					0	0	0.003610	0	0
LRFN2	57497	broad.mit.edu	37	6	40400441	40400441	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:40400441C>T	uc003oph.1	-	2	877	c.412G>A	c.(412-414)GGC>AGC	p.G138S		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	138	LRR 4.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					TCTGCGATGCCGCCCAGCTGG	0.597													11	38					0	0	0.001368	0	0
PTCRA	171558	broad.mit.edu	37	6	42890984	42890984	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:42890984C>T	uc003osx.2	+	2	359	c.278C>T	c.(277-279)TCC>TTC	p.S93F	PTCRA_uc011duz.1_Missense_Mutation_p.P104S|PTCRA_uc010jxx.1_Missense_Mutation_p.P54S|PTCRA_uc010jxy.2_Missense_Mutation_p.S68F|PTCRA_uc010jxz.2_Intron	NM_138296	NP_612153	Q6ISU1	PTCRA_HUMAN	pre T-cell antigen receptor alpha precursor	93	Extracellular (Potential).					integral to membrane	receptor activity			ovary(2)	2	Colorectal(47;0.196)		all cancers(41;0.000731)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			GCCCATCTCTCCCTGCCTTCT	0.612													38	73					0	0	0.004289	0	0
SLC22A7	10864	broad.mit.edu	37	6	43267701	43267701	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:43267701G>A	uc003out.2	+	5	823	c.724G>A	c.(724-726)GGG>AGG	p.G242R	SLC22A7_uc010jyl.1_Missense_Mutation_p.G243R|SLC22A7_uc003ous.2_Missense_Mutation_p.G240R	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	242	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			CTTCTGGACAGGGGGCGTGAT	0.622													29	94					0	0	0.002836	0	0
TMEM63B	55362	broad.mit.edu	37	6	44102468	44102468	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:44102468C>T	uc003owr.2	+	2	211	c.147C>T	c.(145-147)TTC>TTT	p.F49F	TMEM63B_uc003owq.1_Silent_p.F49F|TMEM63B_uc010jyy.1_5'UTR|TMEM63B_uc003ows.2_5'Flank	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	49	Helical; (Potential).					integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			CTCTCGACTTCATGTGCTTCC	0.607													26	70					0	0	0.008361	0	0
CAPN11	11131	broad.mit.edu	37	6	44144036	44144037	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:44144036_44144037CC>TT	uc003owt.1	+	9	1000_1001	c.962_963CC>TT	c.(961-963)CCC>CTT	p.P321L	CAPN11_uc011dvn.1_5'Flank	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	321	Calpain catalytic.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GTCCGGAATCCCTGGGGCCGGA	0.594													19	59					0	0	0.004672	0	0
TCTE1	202500	broad.mit.edu	37	6	44249942	44249942	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:44249942C>T	uc003oxi.2	-	4	1357	c.1201G>A	c.(1201-1203)GAG>AAG	p.E401K	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	401	LRR 4.									ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TCAGACAGCTCATTGCCACCG	0.597													22	62					0	0	0.002299	0	0
SPATS1	221409	broad.mit.edu	37	6	44328265	44328265	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:44328265G>A	uc003oxk.2	+	3	717	c.370G>A	c.(370-372)GAT>AAT	p.D124N	SPATS1_uc003oxg.2_RNA|SPATS1_uc010jzb.2_Missense_Mutation_p.D9N	NM_145026	NP_659463	Q496A3	SPAS1_HUMAN	spermatogenesis associated, serine-rich 1	124										skin(1)	1	all_lung(25;0.00469)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AGTCCAAAAGGATAAATATCC	0.478													23	61					0	0	0.003330	0	0
CYP39A1	51302	broad.mit.edu	37	6	46604199	46604200	+	Missense_Mutation	DNP	TT	GA	GA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:46604199_46604200TT>GA	uc003oyf.1	-	5	862_863	c.658_659AA>TC	c.(658-660)AAG>TCG	p.K220S	CYP39A1_uc011dwa.1_Missense_Mutation_p.K200S|CYP39A1_uc010jzd.1_Missense_Mutation_p.K48S	NM_016593	NP_057677	Q9NYL5	CP39A_HUMAN	cytochrome P450, family 39, subfamily A,	220					bile acid biosynthetic process|bile acid catabolic process|digestion|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	24-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(1)	1						CAGGAACCACTTTTTGGATTTT	0.312													28	29					0	0	0.004672	0	0
PLA2G7	7941	broad.mit.edu	37	6	46677145	46677145	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:46677145T>A	uc010jzf.2	-	9	1057	c.788A>T	c.(787-789)GAT>GTT	p.D263V	PLA2G7_uc010jzg.1_Missense_Mutation_p.D263V	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	263					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			TTTTTCCCTATCAATAGAGTC	0.313													30	46					0	0	0.005524	0	0
MEP1A	4224	broad.mit.edu	37	6	46801146	46801146	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:46801146G>A	uc010jzh.1	+	11	1522	c.1480G>A	c.(1480-1482)GAT>AAT	p.D494N	MEP1A_uc011dwg.1_Missense_Mutation_p.D216N|MEP1A_uc011dwh.1_Missense_Mutation_p.D522N|MEP1A_uc011dwi.1_Missense_Mutation_p.D394N	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	494	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TGGGGAGAACGATGCTATCCT	0.473													47	101					0	0	0.003610	0	0
MEP1A	4224	broad.mit.edu	37	6	46806801	46806801	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:46806801C>T	uc010jzh.1	+	14	2211	c.2169C>T	c.(2167-2169)ATC>ATT	p.I723I	MEP1A_uc011dwg.1_Silent_p.I445I|MEP1A_uc011dwh.1_Silent_p.I751I|MEP1A_uc011dwi.1_Silent_p.I623I	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	723	Helical; (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GCATGGTGATCGGAGGCACGG	0.587													41	112					0	0	0.006999	0	0
GPR116	221395	broad.mit.edu	37	6	46847732	46847732	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:46847732C>T	uc003oyo.3	-	9	1148	c.859G>A	c.(859-861)GAC>AAC	p.D287N	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Missense_Mutation_p.D287N|GPR116_uc010jzi.1_5'UTR|GPR116_uc003oyr.2_Missense_Mutation_p.D287N	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	287	Ig-like 1.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CTGACTGTGTCCCCTTCAAAG	0.413													14	44					0	0	0.004007	0	0
GPR110	266977	broad.mit.edu	37	6	46988502	46988502	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:46988502A>G	uc003oyt.2	-	7	775	c.576T>C	c.(574-576)ATT>ATC	p.I192I	GPR110_uc011dwl.1_5'UTR|GPR110_uc003oyu.1_Silent_p.I192I	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	192	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						CAAAACCTTGAATTCTTTCAT	0.388													15	25					0	0	0.002450	0	0
GPR111	222611	broad.mit.edu	37	6	47646750	47646750	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:47646750C>T	uc010jzj.1	+	4	352	c.351C>T	c.(349-351)TCC>TCT	p.S117S	GPR111_uc010jzk.1_Silent_p.S49S|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	117	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CAGACTACTCCCAGTGTACTC	0.512													28	44					0	0	0.006320	0	0
GPR115	221393	broad.mit.edu	37	6	47684583	47684583	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:47684583G>A	uc003oza.1	+	7	2232	c.1974G>A	c.(1972-1974)AAG>AAA	p.K658K	GPR115_uc003oyz.1_Silent_p.K715K|GPR115_uc003ozb.1_Silent_p.K656K	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	658	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						TGGATCACAAGGTAATTTGAA	0.408													22	38					0	0	0.002299	0	0
CRISP3	10321	broad.mit.edu	37	6	49703226	49703226	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:49703226G>A	uc003ozs.2	-	4	283	c.268C>T	c.(268-270)CGA>TGA	p.R90*		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	90					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			CTTGTCATTCGATCCTTTGGG	0.333													33	120					0	0	0.002836	0	0
PGK2	5232	broad.mit.edu	37	6	49754071	49754071	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:49754071C>G	uc003ozu.2	-	1	937	c.830G>C	c.(829-831)GGT>GCT	p.G277A		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	277					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AATCCTTACACCATTCTTTTG	0.438													36	80					0	0	0.003755	0	0
PKHD1	5314	broad.mit.edu	37	6	51918901	51918901	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:51918901G>A	uc003pah.1	-	20	2175	c.1899C>T	c.(1897-1899)ATC>ATT	p.I633I	PKHD1_uc003pai.2_Silent_p.I633I	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	633	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TTTGAAAGCCGATTGTGAAGG	0.478													19	39					0	0	0.007413	0	0
PKHD1	5314	broad.mit.edu	37	6	51927330	51927330	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:51927330C>T	uc003pah.1	-	14	1381	c.1105G>A	c.(1105-1107)GGA>AGA	p.G369R	PKHD1_uc003pai.2_Missense_Mutation_p.G369R	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	369	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AAAGGTTGTCCTTCCTGTGAC	0.493													35	87					0	0	0.004289	0	0
TINAG	27283	broad.mit.edu	37	6	54173538	54173538	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:54173538G>A	uc003pcj.2	+	1	336	c.190G>A	c.(190-192)GAA>AAA	p.E64K	TINAG_uc003pci.2_Missense_Mutation_p.E64K|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	64	SMB.				cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			TGGCTGTTGTGAAGACAGAGA	0.428													46	108					0	0	0.003610	0	0
TINAG	27283	broad.mit.edu	37	6	54212204	54212204	+	Missense_Mutation	SNP	G	A	A	rs75755871	by1000genomes	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:54212204G>A	uc003pcj.2	+	6	934	c.788G>A	c.(787-789)CGA>CAA	p.R263Q	TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	263					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			TCTAAGGGTCGATACACGGCC	0.423													22	38					0	0	0.002780	0	0
FAM83B	222584	broad.mit.edu	37	6	54805149	54805149	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:54805149T>A	uc003pck.2	+	5	1496	c.1380T>A	c.(1378-1380)AAT>AAA	p.N460K		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	460										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CAGACAGGAATTCAAATGTTC	0.453													22	36					0	0	0.010504	0	0
COL21A1	81578	broad.mit.edu	37	6	56035891	56035891	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:56035891G>A	uc003pcs.2	-	4	908	c.676C>T	c.(676-678)CGT>TGT	p.R226C	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.R226C|COL21A1_uc003pcu.1_Missense_Mutation_p.R226C	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	226					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTTTCATCACGAGCTGCCACT	0.308													21	55					0	0	0.006320	0	0
COL21A1	81578	broad.mit.edu	37	6	56035908	56035908	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:56035908C>T	uc003pcs.2	-	4	891	c.659G>A	c.(658-660)CGA>CAA	p.R220Q	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.R220Q|COL21A1_uc003pcu.1_Missense_Mutation_p.R220Q	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	220					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CACTGGAATTCGTGTTGGACA	0.323													20	52					0	0	0.003954	0	0
DST	667	broad.mit.edu	37	6	56479171	56479171	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:56479171G>A	uc003pdf.2	-	36	4970	c.4942C>T	c.(4942-4944)CCC>TCC	p.P1648S	DST_uc003pcz.3_Missense_Mutation_p.P1470S|DST_uc011dxj.1_Missense_Mutation_p.P1499S|DST_uc011dxk.1_Missense_Mutation_p.P1510S|DST_uc003pcy.3_Missense_Mutation_p.P1144S|DST_uc003pdb.2_Missense_Mutation_p.P1144S	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TTAGAGAAGGGAGGTTTTCCA	0.358													12	46					0	0	0.001855	0	0
ZNF451	26036	broad.mit.edu	37	6	57012021	57012021	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:57012021C>T	uc003pdm.1	+	10	1362	c.1138C>T	c.(1138-1140)CAT>TAT	p.H380Y	ZNF451_uc003pdl.2_Missense_Mutation_p.H380Y|ZNF451_uc003pdn.1_Missense_Mutation_p.H380Y|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.H380Y	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	380	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			CACCCAAAATCATAAGCAGAA	0.423													13	44					0	0	0.004007	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62604687	62604687	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:62604687G>A	uc003peg.2	-	6	910	c.663C>T	c.(661-663)CTC>CTT	p.L221L		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	221	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		CCCGAGGGGTGAGAACACCTC	0.592													18	28					0	0	0.004990	0	0
PHF3	23469	broad.mit.edu	37	6	64394787	64394787	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:64394787G>A	uc003pep.1	+	3	1190	c.1164G>A	c.(1162-1164)GAG>GAA	p.E388E	PHF3_uc010kaf.1_Silent_p.E388E|PHF3_uc003pem.2_Silent_p.E341E|PHF3_uc010kag.1_Silent_p.E300E|PHF3_uc010kah.1_Silent_p.E202E|PHF3_uc003pen.2_Silent_p.E300E|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Silent_p.E388E	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	388					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			ATAAAACTGAGAACACCCTTG	0.378													20	58					0	0	0.008871	0	0
BAI3	577	broad.mit.edu	37	6	70064192	70064192	+	Missense_Mutation	SNP	C	T	T	rs142863825		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:70064192C>T	uc003pev.3	+	27	3975	c.3527C>T	c.(3526-3528)TCG>TTG	p.S1176L	BAI3_uc010kak.2_Missense_Mutation_p.S1176L|BAI3_uc011dxx.1_Missense_Mutation_p.S382L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1176	Poly-Ser.|Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCTTCGAGTTCGTTTCCTAAT	0.393													32	82					0	0	0.004289	0	0
RIMS1	22999	broad.mit.edu	37	6	73110358	73110358	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:73110358G>A	uc003pga.2	+	34	5098	c.5021G>A	c.(5020-5022)CGG>CAG	p.R1674Q	RIMS1_uc011dyb.1_Missense_Mutation_p.R1071Q|RIMS1_uc003pgc.2_Missense_Mutation_p.R1089Q|RIMS1_uc010kaq.2_Missense_Mutation_p.R994Q|RIMS1_uc011dyc.1_Missense_Mutation_p.R799Q|RIMS1_uc010kar.2_Missense_Mutation_p.R742Q|RIMS1_uc011dyd.1_Missense_Mutation_p.R808Q|RIMS1_uc003pgf.2_Missense_Mutation_p.R674Q|RIMS1_uc003pgg.2_Missense_Mutation_p.R570Q|RIMS1_uc003pgi.2_Missense_Mutation_p.R490Q|RIMS1_uc003pgh.2_Missense_Mutation_p.R541Q|RIMS1_uc003pgd.2_Missense_Mutation_p.R740Q|RIMS1_uc003pge.2_Missense_Mutation_p.R714Q|RIMS1_uc011dye.1_Missense_Mutation_p.R480Q|RIMS1_uc011dyf.1_Missense_Mutation_p.R298Q|RIMS1_uc011dyg.1_Missense_Mutation_p.R201Q	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1674					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CCCCTCACCCGGCGGGCTTCC	0.498													33	59					0	0	0.004878	0	0
KCNQ5	56479	broad.mit.edu	37	6	73879567	73879567	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:73879567C>T	uc003pgk.2	+	11	1914	c.1567C>T	c.(1567-1569)CGA>TGA	p.R523*	KCNQ5_uc011dyh.1_Nonsense_Mutation_p.R542*|KCNQ5_uc011dyi.1_Nonsense_Mutation_p.R533*|KCNQ5_uc010kat.2_Nonsense_Mutation_p.R514*|KCNQ5_uc011dyj.1_Intron|KCNQ5_uc011dyk.1_Nonsense_Mutation_p.R273*	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	523					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		AACTGTCATTCGAGCTATCAG	0.393													15	26					0	0	0.003163	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904929	73904929	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:73904929G>A	uc003pgk.2	+	14	2938	c.2591G>A	c.(2590-2592)TGG>TAG	p.W864*	KCNQ5_uc011dyh.1_Nonsense_Mutation_p.W883*|KCNQ5_uc011dyi.1_Nonsense_Mutation_p.W874*|KCNQ5_uc010kat.2_Nonsense_Mutation_p.W855*|KCNQ5_uc011dyj.1_Nonsense_Mutation_p.W754*|KCNQ5_uc011dyk.1_Nonsense_Mutation_p.W614*	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	864					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TACCCCAAATGGAGGGAATCC	0.502													23	50					0	0	0.002780	0	0
C6orf221	154288	broad.mit.edu	37	6	74073507	74073507	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:74073507G>A	uc003pgt.3	+	3	631	c.578G>A	c.(577-579)CGA>CAA	p.R193Q		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	193										skin(2)	2						GGGACCCAGCGATCCCCCGAA	0.642													19	34					0	0	0.008871	0	0
C6orf150	115004	broad.mit.edu	37	6	74155401	74155401	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:74155401A>T	uc003pgx.1	-	2	866	c.727T>A	c.(727-729)TCC>ACC	p.S243T		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	243											0						CGAGTGTTGGAATATTCTTCT	0.308													18	44					0	0	0.001882	0	0
FILIP1	27145	broad.mit.edu	37	6	76024394	76024394	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:76024394T>G	uc003pia.2	-	5	1527	c.1154A>C	c.(1153-1155)AAG>ACG	p.K385T	FILIP1_uc003phy.1_Missense_Mutation_p.K385T|FILIP1_uc003phz.2_Missense_Mutation_p.K286T|FILIP1_uc010kbe.2_Missense_Mutation_p.K388T|FILIP1_uc003pib.1_Missense_Mutation_p.K137T	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	385	Potential.									skin(3)|ovary(1)	4						AAGCACACGCTTTCGAAGATT	0.423													5	154					0	0	0.000602	0	0
IMPG1	3617	broad.mit.edu	37	6	76751728	76751728	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:76751728G>A	uc003pik.1	-	2	313	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	61					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTGCCAAATCGAATATTCGTC	0.368													39	96					0	0	0.004289	0	0
LCA5	167691	broad.mit.edu	37	6	80223162	80223162	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:80223162G>A	uc003pix.2	-	3	922	c.487C>T	c.(487-489)CGT>TGT	p.R163C	LCA5_uc003piy.2_Missense_Mutation_p.R163C|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.R163C	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	163	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		TTGTTATGACGAAATATAAGT	0.353													27	61					0	0	0.006320	0	0
ELOVL4	6785	broad.mit.edu	37	6	80635945	80635945	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:80635945C>T	uc003pja.3	-	2	573	c.254G>A	c.(253-255)GGG>GAG	p.G85E	ELOVL4_uc011dyt.1_Intron	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	85	Helical; (Potential).				fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	CAAAACCATCCCAAAATTATA	0.348													12	27					0	0	0.002450	0	0
MRAP2	112609	broad.mit.edu	37	6	84765066	84765066	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:84765066G>A	uc003pkg.3	+	2	219	c.29G>A	c.(28-30)AGA>AAA	p.R10K	MRAP2_uc010kbo.2_5'UTR	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	10					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						ATTTCTAACAGAACCTCCCAG	0.433													28	56					0	0	0.005443	0	0
KIAA1009	22832	broad.mit.edu	37	6	84895009	84895009	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:84895009G>A	uc010kbp.2	-	13	1656	c.1559C>T	c.(1558-1560)TCA>TTA	p.S520L	KIAA1009_uc003pkj.3_Missense_Mutation_p.S444L|KIAA1009_uc003pkk.2_Missense_Mutation_p.S520L|KIAA1009_uc003pki.3_5'UTR	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	520					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		CTTGAGTGGTGAACTGGGTTT	0.408													56	121					0	0	0.003610	0	0
CNR1	1268	broad.mit.edu	37	6	88854756	88854756	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:88854756C>T	uc011dzq.1	-	2	3801	c.238G>A	c.(238-240)GAA>AAA	p.E80K	CNR1_uc010kbz.2_Missense_Mutation_p.E80K|CNR1_uc011dzr.1_Missense_Mutation_p.E80K|CNR1_uc011dzs.1_Missense_Mutation_p.E80K|CNR1_uc003pmq.3_Missense_Mutation_p.E80K|CNR1_uc011dzt.1_Missense_Mutation_p.E80K|CNR1_uc010kca.2_Missense_Mutation_p.E47K	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	80	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	TTGTAAAATTCTGTAATGTTC	0.478													18	26					0	0	0.010504	0	0
GJA10	84694	broad.mit.edu	37	6	90604323	90604323	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:90604323G>A	uc011eaa.1	+	1	136	c.136G>A	c.(136-138)GAT>AAT	p.D46N		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	46	Extracellular (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		GGATGTCTGGGATGATGAACA	0.493													20	40					0	0	0.008871	0	0
BACH2	60468	broad.mit.edu	37	6	90642519	90642519	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:90642519C>T	uc011eab.1	-	9	2943	c.2134G>A	c.(2134-2136)GAA>AAA	p.E712K	BACH2_uc003pnw.2_Missense_Mutation_p.E712K	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	712						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		CGGCAAACTTCCTGGGAAAGG	0.532													23	40					0	0	0.001882	0	0
MAP3K7	6885	broad.mit.edu	37	6	91257074	91257074	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:91257074G>A	uc003pnz.1	-	11	1275	c.1113C>T	c.(1111-1113)TCC>TCT	p.S371S	MAP3K7_uc003poa.1_Silent_p.S371S|MAP3K7_uc003pob.1_Silent_p.S371S|MAP3K7_uc003poc.1_Silent_p.S371S	NM_145331	NP_663304	O43318	M3K7_HUMAN	mitogen-activated protein kinase kinase kinase 7	371					activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|histone H3 acetylation|I-kappaB phosphorylation|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytosol|endosome membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)	6		all_cancers(76;6.4e-08)|Acute lymphoblastic leukemia(125;1.43e-09)|Prostate(29;9.32e-09)|all_hematologic(105;3.69e-06)|all_epithelial(107;0.000187)|Ovarian(999;0.0164)		OV - Ovarian serous cystadenocarcinoma(136;2.05e-11)|all cancers(137;3.25e-11)|GBM - Glioblastoma multiforme(226;0.0416)|BRCA - Breast invasive adenocarcinoma(108;0.0429)		TGCTCCCACGGGAGGCTCCCA	0.468													53	144					0	0	0.003610	0	0
EPHA7	2045	broad.mit.edu	37	6	94066578	94066578	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:94066578C>T	uc003poe.2	-	5	1422	c.1181G>A	c.(1180-1182)GGA>GAA	p.G394E	EPHA7_uc003pof.2_Missense_Mutation_p.G394E|EPHA7_uc011eac.1_Missense_Mutation_p.G394E	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	394	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		ATCCTCTAATCCAGTCTGCTG	0.463													20	51					0	0	0.002299	0	0
MCHR2	84539	broad.mit.edu	37	6	100403968	100403968	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:100403968G>A	uc003pqh.1	-	2	371	c.56C>T	c.(55-57)TCC>TTC	p.S19F	MCHR2_uc003pqi.1_Missense_Mutation_p.S19F	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	19	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		TTTATTCCAGGATTTGTTTAA	0.423													33	61					0	0	0.002836	0	0
AKD1	221264	broad.mit.edu	37	6	109867252	109867252	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:109867252A>C	uc003ptn.2	-	26	3120	c.3043T>G	c.(3043-3045)TTA>GTA	p.L1015V	AKD1_uc011eat.1_Missense_Mutation_p.L94V	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1015					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						AAAATGTTTAATTTTTCTGCC	0.428													5	157					0	0	0.001984	0	0
DSE	29940	broad.mit.edu	37	6	116720492	116720492	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:116720492G>A	uc003pws.2	+	2	273	c.79G>A	c.(79-81)GAG>AAG	p.E27K	DSE_uc011ebf.1_Missense_Mutation_p.E27K|DSE_uc003pwq.1_Missense_Mutation_p.E27K|DSE_uc011ebg.1_Missense_Mutation_p.E46K|DSE_uc003pwt.2_Missense_Mutation_p.E27K	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	27					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		CATCACCGACGAGAACCCAGA	0.522													24	59					0	0	0.003330	0	0
RSPH4A	345895	broad.mit.edu	37	6	116944108	116944108	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:116944108G>A	uc003pxe.2	+	2	1009	c.864G>A	c.(862-864)AAG>AAA	p.K288K	RSPH4A_uc010kee.2_Silent_p.K288K	NM_001010892	NP_001010892	Q5TD94	RSH4A_HUMAN	radial spoke head 4 homolog A isoform 1	288					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton|radial spoke					0						AAAAGCAAAAGGCTCTTTTTC	0.328									Kartagener_syndrome				54	134					0	0	0.003610	0	0
ROS1	6098	broad.mit.edu	37	6	117700224	117700224	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:117700224C>T	uc003pxp.1	-	17	2794	c.2595G>A	c.(2593-2595)CAG>CAA	p.Q865Q	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	865	Extracellular (Potential).		Q -> H (in a lung large cell carcinoma sample; somatic mutation).		transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity	p.Q865H(1)		lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTACTTACCTCTGTCCCCGAA	0.363			T	GOPC|ROS1	glioblastoma|NSCLC								9	39					0	0	0.004482	0	0
SLC35F1	222553	broad.mit.edu	37	6	118588184	118588184	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:118588184C>T	uc003pxx.3	+	4	705	c.504C>T	c.(502-504)GTC>GTT	p.V168V	SLC35F1_uc003pxy.1_5'UTR	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	168	Helical; (Potential).				transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		TGATCCCAGTCGTGATTTTGC	0.493													93	215					0	0	0.003610	0	0
FAM184A	79632	broad.mit.edu	37	6	119341252	119341252	+	Missense_Mutation	SNP	G	A	A	rs141308759		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:119341252G>A	uc003pyj.2	-	4	1571	c.1223C>T	c.(1222-1224)TCG>TTG	p.S408L	FAM184A_uc003pyk.3_Missense_Mutation_p.S288L|FAM184A_uc003pyl.3_Missense_Mutation_p.S288L	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	408	Potential.							p.S408L(1)		ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						ATTGACTCTCGATTTTTCTGA	0.373													22	39					0	0	0.002299	0	0
CLVS2	134829	broad.mit.edu	37	6	123369853	123369853	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:123369853C>T	uc003pzi.1	+	4	1520	c.651C>T	c.(649-651)TTC>TTT	p.F217F		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	217	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TCCGGCCTTTCCTGAAGGAGA	0.393													56	114					0	0	0.003610	0	0
C6orf58	352999	broad.mit.edu	37	6	127899834	127899834	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:127899834G>A	uc003qbh.2	+	2	317	c.305G>A	c.(304-306)AGA>AAA	p.R102K		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	102						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		CCTCCAGGCAGATTAGCTGAT	0.418													37	114					0	0	0.008740	0	0
THEMIS	387357	broad.mit.edu	37	6	128134578	128134578	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:128134578C>T	uc003qbi.2	-	5	1527	c.1208G>A	c.(1207-1209)GGA>GAA	p.G403E	THEMIS_uc010kfa.2_Missense_Mutation_p.G306E|THEMIS_uc011ebt.1_Missense_Mutation_p.G403E|THEMIS_uc010kfb.2_Missense_Mutation_p.G368E	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	403	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TTTTTTTATTCCCTCACAGAG	0.468													35	57					0	0	0.002445	0	0
THEMIS	387357	broad.mit.edu	37	6	128134804	128134804	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:128134804G>A	uc003qbi.2	-	5	1301	c.982C>T	c.(982-984)CCT>TCT	p.P328S	THEMIS_uc010kfa.2_Missense_Mutation_p.P231S|THEMIS_uc011ebt.1_Missense_Mutation_p.P328S|THEMIS_uc010kfb.2_Missense_Mutation_p.P293S	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	328	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TGTCTTTTAGGAAAATTGCTT	0.458													27	68					0	0	0.005443	0	0
PTPRK	5796	broad.mit.edu	37	6	128643228	128643228	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:128643228G>A	uc003qbk.2	-	3	818	c.451C>T	c.(451-453)CGG>TGG	p.R151W	PTPRK_uc003qbj.2_Missense_Mutation_p.R151W|PTPRK_uc010kfc.2_Missense_Mutation_p.R151W|PTPRK_uc011ebu.1_Missense_Mutation_p.R151W|PTPRK_uc003qbl.1_Intron|PTPRK_uc011ebv.1_Missense_Mutation_p.R151W|PTPRK_uc003qbm.3_Missense_Mutation_p.R80W	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	151	Extracellular (Potential).|MAM.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AGCTCAGCCCGAAGCCAATCT	0.423													19	54					0	0	0.006122	0	0
EPB41L2	2037	broad.mit.edu	37	6	131201289	131201289	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:131201289A>G	uc003qch.2	-	13	2073	c.1891T>C	c.(1891-1893)TTG>CTG	p.L631L	EPB41L2_uc003qce.1_Intron|EPB41L2_uc003qcf.1_RNA|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Intron|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_Intron|EPB41L2_uc003qcj.1_5'Flank	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	631	Spectrin--actin-binding.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CAAACCTCCAACATTAAATTG	0.428													8	27					0	0	0.004482	0	0
ENPP1	5167	broad.mit.edu	37	6	132173319	132173319	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:132173319G>A	uc011ecf.1	+	5	581	c.561G>A	c.(559-561)GAG>GAA	p.E187E		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	187	Extracellular (Potential).|SMB 2.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	TTTTAGGTGAGAAAAGTTGGG	0.318													31	51					0	0	0.003755	0	0
TAAR8	83551	broad.mit.edu	37	6	132873961	132873961	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:132873961C>T	uc011ecj.1	+	1	130	c.130C>T	c.(130-132)CTG>TTG	p.L44L		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	44	Helical; Name=1; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		TGGGTCTTTGCTGGCTGTATT	0.448													53	119					0	0	0.003610	0	0
TAAR2	9287	broad.mit.edu	37	6	132939145	132939145	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:132939145G>A	uc003qdl.1	-	2	200	c.200C>T	c.(199-201)TCC>TTC	p.S67F	TAAR2_uc010kfr.1_Missense_Mutation_p.S22F	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	67	Helical; Name=1; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		GTAGGAAATGGAAATTATCAT	0.428													27	34					0	0	0.005443	0	0
MAP7	9053	broad.mit.edu	37	6	136687023	136687023	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:136687023C>T	uc003qgz.2	-	10	1369	c.1123G>A	c.(1123-1125)GAA>AAA	p.E375K	MAP7_uc011edf.1_Missense_Mutation_p.E360K|MAP7_uc011edg.1_Missense_Mutation_p.E405K|MAP7_uc010kgu.2_Missense_Mutation_p.E397K|MAP7_uc011edh.1_Missense_Mutation_p.E360K|MAP7_uc010kgv.2_Missense_Mutation_p.E397K|MAP7_uc010kgs.2_Missense_Mutation_p.E229K|MAP7_uc011edi.1_Missense_Mutation_p.E229K|MAP7_uc010kgq.1_Missense_Mutation_p.E281K|MAP7_uc003qha.1_Missense_Mutation_p.E338K|MAP7_uc010kgr.2_Missense_Mutation_p.E229K	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	375	Pro-rich.				establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		ACTTTGACTTCCCTCTTGACA	0.567													40	66					0	0	0.009718	0	0
MAP3K5	4217	broad.mit.edu	37	6	136944029	136944029	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:136944029G>A	uc003qhc.2	-	15	2468	c.2107C>T	c.(2107-2109)CAA>TAA	p.Q703*	MAP3K5_uc011edj.1_Intron|MAP3K5_uc011edk.1_Nonsense_Mutation_p.Q548*	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	703	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		ATTCTGACTTGGTTGCTCAAG	0.408													64	138					0	0	0.003610	0	0
TNFAIP3	7128	broad.mit.edu	37	6	138197164	138197164	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:138197164C>T	uc003qhr.2	+	5	732	c.666C>T	c.(664-666)TCC>TCT	p.S222S	TNFAIP3_uc003qhs.2_Silent_p.S222S	NM_006290	NP_006281	P21580	TNAP3_HUMAN	tumor necrosis factor, alpha-induced protein 3	222	TRAF-binding.|OTU.				anti-apoptosis|apoptosis|B-1 B cell homeostasis|negative regulation of B cell activation|negative regulation of bone resorption|negative regulation of CD40 signaling pathway|negative regulation of endothelial cell apoptosis|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of inflammatory response|negative regulation of interleukin-2 production|negative regulation of interleukin-6 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of osteoclast proliferation|negative regulation of protein ubiquitination|negative regulation of smooth muscle cell proliferation|negative regulation of toll-like receptor 2 signaling pathway|negative regulation of toll-like receptor 3 signaling pathway|negative regulation of tumor necrosis factor production|negative regulation of type I interferon production|positive regulation of protein catabolic process|protein K48-linked ubiquitination|protein K63-linked deubiquitination|protein oligomerization|regulation of defense response to virus by host|regulation of germinal center formation|regulation of vascular wound healing|tolerance induction to lipopolysaccharide	centrosome|cytosol|nucleus	caspase inhibitor activity|DNA binding|protease binding|protein self-association|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-protein ligase activity|ubiquitin-specific protease activity|zinc ion binding	p.0?(22)		haematopoietic_and_lymphoid_tissue(133)|lung(3)|ovary(1)	137	Breast(32;0.135)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000849)|OV - Ovarian serous cystadenocarcinoma(155;0.00468)		AATCAGGTTCCAATTTCGCCC	0.443			D|N|F		marginal zone B-cell lymphomas|Hodgkin's lymphoma|primary mediastinal B cell lymphoma								20	62					0	0	0.002299	0	0
ECT2L	345930	broad.mit.edu	37	6	139165564	139165564	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:139165564T>C	uc003qif.1	+	5	714	c.611T>C	c.(610-612)GTT>GCT	p.V204A	ECT2L_uc011edq.1_Missense_Mutation_p.V135A	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	204					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						TTATTCAAAGTTCGACCCCCT	0.488													15	75					0	0	0.004007	0	0
NMBR	4829	broad.mit.edu	37	6	142399727	142399727	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:142399727G>A	uc003qiu.2	-	2	877	c.736C>T	c.(736-738)CTT>TTT	p.L246F		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	246	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		TCTCCAGGAAGATTGTGTGCG	0.353													9	33					0	0	0.004482	0	0
HIVEP2	3097	broad.mit.edu	37	6	143074834	143074834	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:143074834G>A	uc003qjd.2	-	10	7494	c.6751C>T	c.(6751-6753)CCC>TCC	p.P2251S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2251					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		GGCAATGTGGGTGAAGGATGT	0.562													24	49					0	0	0.002299	0	0
HIVEP2	3097	broad.mit.edu	37	6	143090907	143090907	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:143090907G>A	uc003qjd.2	-	5	5712	c.4969C>T	c.(4969-4971)CCC>TCC	p.P1657S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1657					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		ACATAATTGGGTTTTGTATAA	0.448													27	39					0	0	0.005443	0	0
SHPRH	257218	broad.mit.edu	37	6	146243875	146243875	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:146243875C>T	uc003qlf.2	-	19	4042	c.3643G>A	c.(3643-3645)GAG>AAG	p.E1215K	SHPRH_uc003qld.2_Missense_Mutation_p.E1219K|SHPRH_uc003qle.2_Missense_Mutation_p.E1219K|SHPRH_uc003qlg.1_Missense_Mutation_p.E771K|SHPRH_uc003qlh.2_Missense_Mutation_p.E140K|SHPRH_uc003qli.1_Missense_Mutation_p.E140K	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	1215					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		GGAGGTCCCTCCAGGTTTTTT	0.438													13	45					0	0	0.001368	0	0
SHPRH	257218	broad.mit.edu	37	6	146266711	146266711	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:146266711G>A	uc003qlf.2	-	8	1783	c.1384C>T	c.(1384-1386)CTT>TTT	p.L462F	SHPRH_uc003qld.2_Missense_Mutation_p.L462F|SHPRH_uc003qle.2_Missense_Mutation_p.L462F|SHPRH_uc003qlg.1_Missense_Mutation_p.L18F|SHPRH_uc003qlj.1_Missense_Mutation_p.L351F	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	462	H15.				DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		TAGATGGAAAGGATGGACACT	0.338													14	32					0	0	0.001855	0	0
GRM1	2911	broad.mit.edu	37	6	146625958	146625960	+	Missense_Mutation	TNP	CCC	TTT	TTT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:146625958_146625960CCC>TTT	uc010khw.1	+	4	1632_1634	c.1162_1164CCC>TTT	c.(1162-1164)CCC>TTT	p.P388F	GRM1_uc010khv.1_Missense_Mutation_p.P388F|GRM1_uc003qll.2_Missense_Mutation_p.P388F|GRM1_uc011edz.1_Missense_Mutation_p.P388F|GRM1_uc011eea.1_Missense_Mutation_p.P388F	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	388	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TCTGGAAAATCCCAACTTTAAAC	0.448													9	45					0	0	0.004672	0	0
GRM1	2911	broad.mit.edu	37	6	146673564	146673564	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:146673564C>T	uc010khw.1	+	5	1835	c.1365C>T	c.(1363-1365)ATC>ATT	p.I455I	GRM1_uc010khv.1_Silent_p.I455I|GRM1_uc003qll.2_Silent_p.I455I|GRM1_uc011edz.1_Silent_p.I455I|GRM1_uc011eea.1_Silent_p.I455I	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	455	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	ACTTCCTCATCAAGTCCTCAT	0.522													68	101					0	0	0.003610	0	0
TAB2	23118	broad.mit.edu	37	6	149720314	149720314	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:149720314C>T	uc003qmj.2	+	6	2111	c.1933C>T	c.(1933-1935)CCC>TCC	p.P645S	TAB2_uc011eec.1_Missense_Mutation_p.P613S|TAB2_uc003qmk.3_RNA|SUMO4_uc003qml.2_5'Flank	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	645					activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						GCCACCAAAACCCAAAGGTTA	0.323													11	28					0	0	0.001855	0	0
ZC3H12D	340152	broad.mit.edu	37	6	149783087	149783087	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:149783087A>C	uc003qmn.1	-	2	395	c.325T>G	c.(325-327)TTC>GTC	p.F109V	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Missense_Mutation_p.F109V|ZC3H12D_uc010kid.2_Missense_Mutation_p.F109V	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	109						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		CGGCAAGAGAAGGTTTCTTTA	0.458													4	12					0	0	0.009096	0	0
ZC3H12D	340152	broad.mit.edu	37	6	149795631	149795631	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:149795631G>A	uc003qmn.1	-	1	119	c.49C>T	c.(49-51)CGG>TGG	p.R17W	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Missense_Mutation_p.R17W|ZC3H12D_uc010kid.2_Missense_Mutation_p.R17W	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	17						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		ACATCCTCCCGGTCATAGCCC	0.667													6	12					0	0	0.001984	0	0
IYD	389434	broad.mit.edu	37	6	150719329	150719329	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:150719329G>A	uc003qnu.1	+	5	966	c.826G>A	c.(826-828)GAC>AAC	p.D276N	IYD_uc003qnv.1_3'UTR|IYD_uc003qnw.1_RNA|IYD_uc003qnx.1_3'UTR|IYD_uc010kik.1_Missense_Mutation_p.D194N	NM_203395	NP_981932	Q6PHW0	IYD1_HUMAN	iodotyrosine dehalogenase 1 isoform 2	276	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	integral to membrane|plasma membrane				ovary(2)	2		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;4.16e-12)		CACGGTGCCTGACCTCAAGCG	0.652													30	53					0	0	0.002445	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151121952	151121952	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:151121952T>C	uc003qny.1	+	7	1039	c.727T>C	c.(727-729)TCC>CCC	p.S243P	PLEKHG1_uc011eel.1_Missense_Mutation_p.S283P|PLEKHG1_uc011eem.1_Missense_Mutation_p.S302P|PLEKHG1_uc003qnz.2_Missense_Mutation_p.S243P	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	243	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		GCCTCTGGGGTCCTATCTCTT	0.498													34	63					0	0	0.004289	0	0
SYNE1	23345	broad.mit.edu	37	6	152646420	152646420	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:152646420A>G	uc010kiw.2	-	81	16058	c.15456T>C	c.(15454-15456)GTT>GTC	p.V5152V	SYNE1_uc003qot.3_Silent_p.V5081V|SYNE1_uc003qou.3_Silent_p.V5152V|SYNE1_uc010kiz.2_Silent_p.V907V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5152	Spectrin 16.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GGAAAGAGTTAACCACTGACA	0.443										HNSCC(10;0.0054)			42	82					0	0	0.006230	0	0
IPCEF1	26034	broad.mit.edu	37	6	154520941	154520941	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:154520941C>T	uc003qpx.2	-	10	924	c.768G>A	c.(766-768)AAG>AAA	p.K256K	OPRM1_uc003qpt.1_Intron|IPCEF1_uc003qpv.2_Silent_p.K127K|IPCEF1_uc003qpw.2_Silent_p.K257K|IPCEF1_uc010kjh.2_Silent_p.K257K	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	256	Ser-rich.				response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						TTTCCAGGGCCTTGTGGATGC	0.423													25	74					0	0	0.004656	0	0
IPCEF1	26034	broad.mit.edu	37	6	154567864	154567864	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:154567864G>A	uc003qpx.2	-	5	260	c.104C>T	c.(103-105)TCG>TTG	p.S35L	OPRM1_uc003qpt.1_Missense_Mutation_p.R401Q|IPCEF1_uc003qpw.2_Missense_Mutation_p.S36L|IPCEF1_uc010kjh.2_Missense_Mutation_p.S36L	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	35					response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						ATCTTTACACGATATCCTCCT	0.403													26	32					0	0	0.003330	0	0
NOX3	50508	broad.mit.edu	37	6	155764548	155764548	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:155764548G>A	uc003qqm.2	-	5	448	c.345C>T	c.(343-345)ATC>ATT	p.I115I		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	115	Ferric oxidoreductase.|Helical; (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		CCACGATGTGGATGGCTAGGA	0.527													12	25					0	0	0.001368	0	0
ZDHHC14	79683	broad.mit.edu	37	6	158093791	158093791	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:158093791C>T	uc003qqt.2	+	9	1601	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	ZDHHC14_uc003qqs.2_Intron|ZDHHC14_uc010kjn.2_Silent_p.F23F	NM_024630	NP_078906	Q8IZN3	ZDH14_HUMAN	zinc finger, DHHC-type containing 14 isoform 1	368						integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|skin(1)	2		Breast(66;0.00586)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.9e-17)|BRCA - Breast invasive adenocarcinoma(81;5.8e-05)		GCACCAAATTCGTTTTGCAGG	0.542													15	24					0	0	0.001882	0	0
RSPH3	83861	broad.mit.edu	37	6	159420903	159420903	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:159420903G>A	uc003qrx.2	-	1	296	c.106C>T	c.(106-108)CCT>TCT	p.P36S	RSPH3_uc010kju.2_Missense_Mutation_p.P36S|RSPH3_uc003qry.1_Missense_Mutation_p.P36S	NM_031924	NP_114130	Q86UC2	RSPH3_HUMAN	radial spoke 3 homolog	36										ovary(1)|skin(1)	2		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.36e-16)|BRCA - Breast invasive adenocarcinoma(81;5.92e-06)		GCGGCACAAGGGACTTCCGGC	0.692													11	37					0	0	0.008291	0	0
TAGAP	117289	broad.mit.edu	37	6	159461762	159461762	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:159461762G>A	uc003qrz.2	-	7	912	c.580C>T	c.(580-582)CTG>TTG	p.L194L	TAGAP_uc011eft.1_Silent_p.L131L|TAGAP_uc003qsa.2_Silent_p.L16L|TAGAP_uc003qsb.2_Silent_p.L194L|uc003qsc.2_5'Flank	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	194	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		TACTGTTTCAGGGCCTCGATT	0.493													20	49					0	0	0.004656	0	0
SLC22A2	6582	broad.mit.edu	37	6	160679660	160679660	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:160679660C>T	uc003qtf.2	-	1	300	c.130G>A	c.(130-132)GGC>AGC	p.G44S	SLC22A2_uc003qte.1_Missense_Mutation_p.G44S|SLC22A2_uc003qth.1_Missense_Mutation_p.G44S	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	44	Extracellular (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		GGGGTGAAGCCCAGGAAGACG	0.612													11	66					0	0	0.001368	0	0
SLC22A2	6582	broad.mit.edu	37	6	160679778	160679778	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:160679778G>A	uc003qtf.2	-	1	182	c.12C>T	c.(10-12)ACC>ACT	p.T4T	SLC22A2_uc003qte.1_Silent_p.T4T|SLC22A2_uc003qth.1_Silent_p.T4T	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	4	Cytoplasmic (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		CATCGTCCACGGTGGTGGGCA	0.622													8	33					0	0	0.004482	0	0
LPAL2	80350	broad.mit.edu	37	6	160903763	160903763	+	RNA	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:160903763T>G	uc003qtj.2	-	7		c.1121A>C			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		GGCAGGTTCTTCCTGTGACAG	0.473													92	193					0	0	0.003610	0	0
LPA	4018	broad.mit.edu	37	6	161016452	161016452	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:161016452C>T	uc003qtl.2	-	22	3523	c.3403G>A	c.(3403-3405)GAA>AAA	p.E1135K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3643	Kringle 32.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ACACTTGATTCTGTCACCAGG	0.522													39	104					0	0	0.004878	0	0
PLG	5340	broad.mit.edu	37	6	161152223	161152223	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:161152223C>T	uc003qtm.3	+	11	1460	c.1397C>T	c.(1396-1398)CCT>CTT	p.P466L		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	466		Cleavage; by stromelysin-19.			extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GCACCTCCGCCTGTTGTCCTG	0.512													22	45					0	0	0.002299	0	0
C6orf118	168090	broad.mit.edu	37	6	165715342	165715342	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:165715342C>T	uc003qum.3	-	2	505	c.469G>A	c.(469-471)GAA>AAA	p.E157K	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	157											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TTCTTTTCTTCCTTCCCCTCT	0.612													38	73					0	0	0.005524	0	0
C6orf118	168090	broad.mit.edu	37	6	165715547	165715547	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:165715547C>T	uc003qum.3	-	2	300	c.264G>A	c.(262-264)GGG>GGA	p.G88G	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	88											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		AGGCGCGCTCCCCCTTGGGCC	0.647													33	45					0	0	0.003271	0	0
CCR6	1235	broad.mit.edu	37	6	167550636	167550636	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:167550636C>T	uc003qvl.2	+	13	3394	c.918C>T	c.(916-918)TTC>TTT	p.F306F	CCR6_uc010kkm.2_Silent_p.F306F|CCR6_uc003qvn.3_Silent_p.F306F|CCR6_uc003qvm.3_Silent_p.F306F	NM_031409	NP_113597	P51684	CCR6_HUMAN	chemokine (C-C motif) receptor 6	306	Helical; Name=7; (Potential).				cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|humoral immune response	integral to plasma membrane	C-C chemokine receptor activity			ovary(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;8.21e-20)|BRCA - Breast invasive adenocarcinoma(81;4.55e-06)|GBM - Glioblastoma multiforme(31;0.00507)		TCCTGGCTTTCCTGCACTGCT	0.473													25	73					0	0	0.003954	0	0
KIF25	3834	broad.mit.edu	37	6	168431510	168431510	+	Silent	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:168431510C>A	uc003qwk.1	+	3	412	c.150C>A	c.(148-150)CTC>CTA	p.L50L	KIF25_uc003qwl.1_Silent_p.L50L	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	50	Kinesin-motor.				microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		GCCCCCTACTCACTTCTCTCT	0.423													33	72					1.06647e-15	1.19075e-15	0.003755	1	0
FRMD1	79981	broad.mit.edu	37	6	168479606	168479606	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:168479606G>A	uc003qwo.3	-	1	234	c.169C>T	c.(169-171)CTC>TTC	p.L57F		NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	57	FERM.					cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		AGCAGCACGAGGACATCCCTG	0.677													32	54					0	0	0.003755	0	0
WDR27	253769	broad.mit.edu	37	6	170062419	170062419	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:170062419G>A	uc003qwx.2	-	9	1526	c.1006C>T	c.(1006-1008)CCA>TCA	p.P336S	WDR27_uc003qwv.1_5'Flank|WDR27_uc010kkw.1_Missense_Mutation_p.P336S|WDR27_uc003qwy.2_Missense_Mutation_p.P209S|WDR27_uc003qwz.1_Missense_Mutation_p.P69S|WDR27_uc011egw.1_RNA|WDR27_uc003qxa.1_RNA			A2RRH5	WDR27_HUMAN	RecName: Full=WD repeat-containing protein 27;	306										pancreas(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.216)		OV - Ovarian serous cystadenocarcinoma(33;6.48e-20)|BRCA - Breast invasive adenocarcinoma(81;3.56e-07)|GBM - Glioblastoma multiforme(31;0.00168)		GCAGAATTTGGGATGAGTGAG	0.413													29	76					0	0	0.002096	0	0
CHST12	55501	broad.mit.edu	37	7	2472524	2472524	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:2472524C>T	uc003smc.2	+	2	385	c.250C>T	c.(250-252)CCC>TCC	p.P84S	CHST12_uc003smd.2_Missense_Mutation_p.P84S	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	84	Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		GAGCGACCTTCCCAGAAAGGA	0.677													23	40					0	0	0.003954	0	0
RNF216	54476	broad.mit.edu	37	7	5769131	5769131	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:5769131C>T	uc003soy.1	-	7	1340	c.1150G>A	c.(1150-1152)GTG>ATG	p.V384M	RNF216_uc010ksz.1_Missense_Mutation_p.V6M|RNF216_uc010kta.1_Missense_Mutation_p.V6M|RNF216_uc011jwj.1_Missense_Mutation_p.V6M|RNF216_uc003sox.1_Missense_Mutation_p.V441M	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	384					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		CTACTGAGCACTTTGAAGTCG	0.488													31	70					0	0	0.009535	0	0
RSPH10B2	728194	broad.mit.edu	37	7	5968013	5968013	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:5968013C>T	uc003sph.1	-	20	2517	c.2246G>A	c.(2245-2247)AGA>AAA	p.R749K	RSPH10B2_uc003spg.1_Missense_Mutation_p.R596K|RSPH10B2_uc010ktd.1_Missense_Mutation_p.R749K|RSPH10B2_uc011jwk.1_Missense_Mutation_p.D371N	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	749										ovary(1)|pancreas(1)|skin(1)	3						ATCCTTGGGTCTCTCATATTT	0.438													37	184					0	0	0.003610	0	0
HDAC9	9734	broad.mit.edu	37	7	18633644	18633644	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:18633644G>A	uc003suh.2	+	5	688	c.647G>A	c.(646-648)CGA>CAA	p.R216Q	HDAC9_uc003sue.2_Missense_Mutation_p.R216Q|HDAC9_uc011jyd.1_Missense_Mutation_p.R216Q|HDAC9_uc003sui.2_Missense_Mutation_p.R219Q|HDAC9_uc003suj.2_Missense_Mutation_p.R219Q|HDAC9_uc011jya.1_Missense_Mutation_p.R257Q|HDAC9_uc003sua.1_Missense_Mutation_p.R238Q|HDAC9_uc011jyb.1_Missense_Mutation_p.R216Q|HDAC9_uc003sud.1_Missense_Mutation_p.R216Q|HDAC9_uc011jyc.1_Missense_Mutation_p.R219Q|HDAC9_uc003suf.1_Missense_Mutation_p.R247Q|HDAC9_uc010kud.1_Missense_Mutation_p.R219Q|HDAC9_uc011jye.1_Missense_Mutation_p.R188Q|HDAC9_uc011jyf.1_Missense_Mutation_p.R183Q|HDAC9_uc010kue.1_5'UTR	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	216	Interaction with MAPK10 (By similarity).				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TTCCCCCTTCGAAAAACTGGT	0.418													28	48					0	0	0.005443	0	0
MACC1	346389	broad.mit.edu	37	7	20197884	20197884	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:20197884T>G	uc003sus.3	-	5	2409	c.2100A>C	c.(2098-2100)TTA>TTC	p.L700F	MACC1_uc010kug.2_Missense_Mutation_p.L700F	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	700					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						AATCTTCCTTTAACTTCTTTA	0.363													22	42					0	0	0.010504	0	0
STK31	56164	broad.mit.edu	37	7	23854809	23854809	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:23854809C>T	uc003sws.3	+	23	2874	c.2807C>T	c.(2806-2808)CCC>CTC	p.P936L	STK31_uc003swt.3_Missense_Mutation_p.P913L|STK31_uc011jze.1_Intron|STK31_uc010kuq.2_Missense_Mutation_p.P913L|STK31_uc003swv.1_Missense_Mutation_p.P102L	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	936	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GATGGAATCCCCAAAGTGGAT	0.333													14	37					0	0	0.004990	0	0
NPY	4852	broad.mit.edu	37	7	24329192	24329192	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:24329192G>A	uc003sww.1	+	3	349	c.263G>A	c.(262-264)AGA>AAA	p.R88K		NM_000905	NP_000896	P01303	NPY_HUMAN	neuropeptide Y precursor	88					adult feeding behavior|calcium ion transport|cell proliferation|cellular component movement|central nervous system neuron development|cerebral cortex development|digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|neuron projection development|neuropeptide signaling pathway|positive regulation of appetite|synaptic transmission	cell|extracellular space	calcium channel regulator activity|G-protein coupled receptor activity|neuropeptide hormone activity				0						AATGTTCCCAGAACTCGGTAT	0.488													14	46					0	0	0.004007	0	0
HNRNPA2B1	3181	broad.mit.edu	37	7	26236498	26236498	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:26236498C>T	uc003sxr.3	-	5	656	c.440G>A	c.(439-441)AGG>AAG	p.R147K	HNRNPA2B1_uc003sxs.3_Missense_Mutation_p.R135K	NM_031243	NP_112533	P22626	ROA2_HUMAN	heterogeneous nuclear ribonucleoprotein A2/B1	147	RRM 2.				RNA transport	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	nucleotide binding|protein binding|protein binding|RNA binding|single-stranded telomeric DNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TCCAGACTGCCTATCAGTAAT	0.358			T	ETV1	prostate								46	121					0	0	0.003610	0	0
SCRN1	9805	broad.mit.edu	37	7	29963649	29963649	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:29963649G>A	uc010kvp.2	-	7	1373	c.1169C>T	c.(1168-1170)TCC>TTC	p.S390F	SCRN1_uc011jzy.1_Missense_Mutation_p.S322F|SCRN1_uc003tak.2_Missense_Mutation_p.S390F|SCRN1_uc011jzz.1_Missense_Mutation_p.S390F|SCRN1_uc011kaa.1_Missense_Mutation_p.S410F|SCRN1_uc011jzw.1_Missense_Mutation_p.S257F|SCRN1_uc011jzx.1_Missense_Mutation_p.S213F	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	390					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						CAGTGGCTCGGAGCTGGTCAG	0.537													26	52					0	0	0.004656	0	0
CCDC129	223075	broad.mit.edu	37	7	31617906	31617906	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:31617906C>G	uc003tcj.1	+	8	2021	c.1028C>G	c.(1027-1029)CCG>CGG	p.P343R	CCDC129_uc011kad.1_Missense_Mutation_p.P353R|CCDC129_uc003tci.1_Intron|CCDC129_uc011kae.1_Missense_Mutation_p.P369R|CCDC129_uc003tck.1_Missense_Mutation_p.P251R	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	343											0						TCATCTATGCCGGCCAAGCAG	0.498													9	43					0	0	0.006214	0	0
CCDC129	223075	broad.mit.edu	37	7	31617952	31617952	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:31617952G>A	uc003tcj.1	+	8	2067	c.1074G>A	c.(1072-1074)AAG>AAA	p.K358K	CCDC129_uc011kad.1_Silent_p.K368K|CCDC129_uc003tci.1_Intron|CCDC129_uc011kae.1_Silent_p.K384K|CCDC129_uc003tck.1_Silent_p.K266K	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	358											0						GGTCAGTCAAGGGCAGAACTC	0.498													11	44					0	0	0.000978	0	0
BMPER	168667	broad.mit.edu	37	7	34091495	34091495	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:34091495C>T	uc011kap.1	+	8	813	c.699C>T	c.(697-699)CTC>CTT	p.L233L		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	233					blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						TGTTTGACCTCCCTTTTGGGA	0.458													43	93					0	0	0.003610	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35161217	35161217	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:35161217G>A	uc003teq.1	-	14	1597	c.490C>T	c.(490-492)CGC>TGC	p.R164C	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TCACTCAGGCGAATCTGGGAG	0.323													29	44					0	0	0.008361	0	0
TXNDC3	51314	broad.mit.edu	37	7	37936528	37936528	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:37936528G>A	uc003tfn.2	+	17	1973	c.1601G>A	c.(1600-1602)CGA>CAA	p.R534Q		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	534	NDK 3.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GAATGGAGACGATTGATGGGC	0.458									Kartagener_syndrome				30	74					0	0	0.008361	0	0
POU6F2	11281	broad.mit.edu	37	7	39247156	39247156	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:39247156C>T	uc003thb.1	+	4	490	c.448C>T	c.(448-450)CAA>TAA	p.Q150*	POU6F2_uc010kxo.2_Nonsense_Mutation_p.Q142*	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	150					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CACCAACATCCAAGGGCTGGT	0.542													16	41					0	0	0.006122	0	0
HECW1	23072	broad.mit.edu	37	7	43483832	43483832	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:43483832C>T	uc003tid.1	+	11	1666	c.1061C>T	c.(1060-1062)TCC>TTC	p.S354F	HECW1_uc011kbi.1_Missense_Mutation_p.S354F	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	354					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GAGGAGATTTCCCTGAGTACC	0.507													19	46					0	0	0.001882	0	0
HECW1	23072	broad.mit.edu	37	7	43580787	43580787	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:43580787G>A	uc003tid.1	+	25	4650	c.4045G>A	c.(4045-4047)GGT>AGT	p.G1349S	HECW1_uc011kbi.1_Missense_Mutation_p.G1315S	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1349	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TCGCATCCTGGGTCTGGCTCT	0.448													40	73					0	0	0.009718	0	0
MYL7	58498	broad.mit.edu	37	7	44179459	44179459	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:44179459C>T	uc003tkg.2	-	5	311	c.299G>A	c.(298-300)GGG>GAG	p.G100E		NM_021223	NP_067046	Q01449	MLRA_HUMAN	myosin light chain 2a	100					actin filament-based movement|smooth muscle contraction	A band|myosin complex	ATPase activity, coupled|calcium ion binding|microfilament motor activity				0						GGGGTCTGTCCCTGGAAGGCC	0.612													7	14					0	0	0.001984	0	0
RAMP3	10268	broad.mit.edu	37	7	45222933	45222933	+	Silent	SNP	C	T	T	rs148542783		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:45222933C>T	uc003tnb.2	+	3	430	c.369C>T	c.(367-369)ATC>ATT	p.I123I	RAMP3_uc003tnc.2_Silent_p.I91I	NM_005856	NP_005847	O60896	RAMP3_HUMAN	receptor activity modifying protein 3 precursor	123	Helical; (Potential).				intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane|lysosome	protein transporter activity				0					Pramlintide(DB01278)	TCCCGCTGATCGTTATACCCG	0.617													57	126					0	0	0.003610	0	0
IGFBP1	3484	broad.mit.edu	37	7	45930193	45930194	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:45930193_45930194GG>AT	uc003tnp.2	+	2	689_690	c.396_397GG>AT	c.(394-399)GAGGAG>GAATAG	p.E133*	IGFBP1_uc003tno.3_Nonsense_Mutation_p.E133*|IGFBP1_uc010kyn.2_Nonsense_Mutation_p.E133*	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	133						extracellular space	insulin-like growth factor binding			lung(1)	1						TAACTGAGGAGGAGCTCCTGGA	0.535											OREG0018048	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	57					0	0	0.004672	0	0
TNS3	64759	broad.mit.edu	37	7	47454705	47454705	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:47454705G>A	uc003tnv.2	-	11	940	c.573C>T	c.(571-573)TTC>TTT	p.F191F	TNS3_uc003tnw.2_Silent_p.F191F|TNS3_uc010kyo.1_Silent_p.F191F	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	191	C2 tensin-type.					focal adhesion	protein binding			ovary(4)	4						CACCTGTGTCGAAGTTGGGGG	0.572													14	16					0	0	0.002450	0	0
PKD1L1	168507	broad.mit.edu	37	7	47884669	47884669	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:47884669G>A	uc003tny.1	-	33	5161	c.5161C>T	c.(5161-5163)CGC>TGC	p.R1721C		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1721	Extracellular (Potential).|GPS.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GCCGCGAGGCGATGGTAGCTA	0.463													12	37					0	0	0.001855	0	0
PKD1L1	168507	broad.mit.edu	37	7	47917121	47917121	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:47917121G>A	uc003tny.1	-	22	3629	c.3629C>T	c.(3628-3630)ACC>ATC	p.T1210I		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1210	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ACTGAAGACGGTGTGTGCTTC	0.572													38	69					0	0	0.007835	0	0
PKD1L1	168507	broad.mit.edu	37	7	47969116	47969116	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:47969116C>T	uc003tny.1	-	7	745	c.745G>A	c.(745-747)GGC>AGC	p.G249S		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	249	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGCGGAAGGCCGTGGGAGCTG	0.622													8	31					0	0	0.003080	0	0
CDC14C	168448	broad.mit.edu	37	7	48964496	48964496	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:48964496G>A	uc010kyv.1	+	1	340	c.228G>A	c.(226-228)AAG>AAA	p.K76K		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						AGATAAATAAGAAATTAAAGT	0.353													15	42					0	0	0.010504	0	0
CDC14C	168448	broad.mit.edu	37	7	48965439	48965439	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:48965439G>A	uc010kyv.1	+	1	1283	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						TGATGACGACGAAATCAATGG	0.463													6	13					0	0	0.001168	0	0
ZPBP	11055	broad.mit.edu	37	7	49977143	49977143	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:49977143C>T	uc003tou.2	-	8	1107	c.1037G>A	c.(1036-1038)GGA>GAA	p.G346E	ZPBP_uc011kci.1_Missense_Mutation_p.G272E|ZPBP_uc010kyw.2_Missense_Mutation_p.G345E	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	346					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					CGTTTTTGCTCCATACACCAG	0.323													26	92					0	0	0.002445	0	0
ZPBP	11055	broad.mit.edu	37	7	49977183	49977183	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:49977183C>T	uc003tou.2	-	8	1067	c.997G>A	c.(997-999)GGA>AGA	p.G333R	ZPBP_uc011kci.1_Missense_Mutation_p.G259R|ZPBP_uc010kyw.2_Missense_Mutation_p.G332R	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	333					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					CAATGAATTCCATCACGGGGG	0.328													26	84					0	0	0.002836	0	0
IKZF1	10320	broad.mit.edu	37	7	50450384	50450384	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:50450384G>A	uc003tow.3	+	6	736	c.568G>A	c.(568-570)GGC>AGC	p.G190S	IKZF1_uc003tox.3_Missense_Mutation_p.G190S|IKZF1_uc003toy.3_Missense_Mutation_p.G190S|IKZF1_uc011kck.1_Missense_Mutation_p.G103S|IKZF1_uc003toz.3_Missense_Mutation_p.G160S|IKZF1_uc010kyx.2_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	190	C2H2-type 3.|Required for both high-affinity DNA binding and pericentromeric heterochromatin localization (By similarity).				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				CGCCCTCACTGGCCACCTGAG	0.657			D		ALL								4	11					0	0	0.001168	0	0
DDC	1644	broad.mit.edu	37	7	50605573	50605573	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:50605573C>T	uc003tpf.3	-	4	506	c.420G>A	c.(418-420)GGG>GGA	p.G140G	DDC_uc010kza.2_Intron|DDC_uc003tpg.3_Silent_p.G140G	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	140	2.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	TCACTCCTCCCCCTTCTCCAG	0.552													18	55					0	0	0.007413	0	0
POM121L12	285877	broad.mit.edu	37	7	53103793	53103793	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:53103793C>T	uc003tpz.2	+	1	445	c.429C>T	c.(427-429)CCC>CCT	p.P143P		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	143											0						GGATCGCGCCCCCTGAGCGTC	0.577													12	20					0	0	0.002450	0	0
VSTM2A	222008	broad.mit.edu	37	7	54612430	54612430	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:54612430C>T	uc010kzf.2	+	2	600	c.195C>T	c.(193-195)TTC>TTT	p.F65F	VSTM2A_uc010kze.2_Silent_p.F65F|VSTM2A_uc003tqc.3_Silent_p.F65F	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	65	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			AATGGTGGTTCCTGCGGGGGC	0.716													12	34					0	0	0.001855	0	0
ZNF479	90827	broad.mit.edu	37	7	57200000	57200000	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:57200000C>T	uc010kzo.2	-	2	303	c.32G>A	c.(31-33)CGA>CAA	p.R11Q		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			CACCATTTCTCGGCTTCCAGG	0.552													16	45					0	0	0.004990	0	0
LOC168474	168474	broad.mit.edu	37	7	64313075	64313075	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:64313075C>T	uc003ttj.1	-	1	1104	c.552G>A	c.(550-552)TGG>TGA	p.W184*		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						TAATATTATTCCATTTCTTAG	0.517													30	51					0	0	0.002445	0	0
ASL	435	broad.mit.edu	37	7	65556996	65556996	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:65556996C>T	uc003tuo.2	+	15	1177	c.1066C>T	c.(1066-1068)CAC>TAC	p.H356Y	ASL_uc003tup.2_Missense_Mutation_p.H356Y|ASL_uc003tur.2_Missense_Mutation_p.H330Y|ASL_uc003tuq.2_Missense_Mutation_p.H336Y	NM_000048	NP_000039	P04424	ARLY_HUMAN	argininosuccinate lyase isoform 1	356					arginine biosynthetic process via ornithine|arginine catabolic process|urea cycle	cytosol	argininosuccinate lyase activity			breast(2)	2					L-Arginine(DB00125)	CCCCCAGATTCACCAAGAGAA	0.632													56	116					0	0	0.003610	0	0
NCRNA00174	285908	broad.mit.edu	37	7	65842553	65842553	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:65842553C>T	uc003tux.2	-	5		c.2902G>A				NR_026873				Homo sapiens cDNA FLJ33894 fis, clone CTONG2007776, weakly similar to SYNAPSIN I.												0						CGTGCTGTTCCTGGCGAGGCT	0.572													4	13					0	0	0.000602	0	0
PCLO	27445	broad.mit.edu	37	7	82578962	82578962	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:82578962G>A	uc003uhx.2	-	6	11231	c.10942C>T	c.(10942-10944)CCT>TCT	p.P3648S	PCLO_uc003uhv.2_Missense_Mutation_p.P3648S|PCLO_uc010lec.2_Missense_Mutation_p.P613S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3579					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATATCATCAGGGAGGGGTTTT	0.468													117	80					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82579685	82579685	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:82579685C>T	uc003uhx.2	-	6	10508	c.10219G>A	c.(10219-10221)GAA>AAA	p.E3407K	PCLO_uc003uhv.2_Missense_Mutation_p.E3407K|PCLO_uc010lec.2_Missense_Mutation_p.E372K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3338					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTTGTTTTTCCTCTTTCACA	0.418													55	35					0	0	0.003610	0	0
SEMA3E	9723	broad.mit.edu	37	7	83047717	83047717	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:83047717G>A	uc003uhy.1	-	5	1005	c.539C>T	c.(538-540)TCC>TTC	p.S180F		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	180	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				AATTAAAGTGGAGATGAAGGA	0.408													16	6					0	0	0.004007	0	0
GRM3	2913	broad.mit.edu	37	7	86415780	86415780	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:86415780G>A	uc003uid.2	+	3	1771	c.672G>A	c.(670-672)GAG>GAA	p.E224E	GRM3_uc010lef.2_Silent_p.E222E|GRM3_uc010leg.2_Silent_p.E96E|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	224	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ATTACGGGGAGACAGGGATCG	0.607													38	19					0	0	0.005524	0	0
ABCB1	5243	broad.mit.edu	37	7	87170762	87170762	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:87170762C>T	uc003uiz.1	-	19	2648	c.2230G>A	c.(2230-2232)GAT>AAT	p.D744N	ABCB1_uc011khc.1_Missense_Mutation_p.D680N	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	744	ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	GTTTCAGGATCATCAATTCTT	0.353													44	41					0	0	0.003610	0	0
ZNF804B	219578	broad.mit.edu	37	7	88962863	88962863	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:88962863C>T	uc011khi.1	+	4	1105	c.567C>T	c.(565-567)CAC>CAT	p.H189H		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	189						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CAAATCGACACCAATTACAAT	0.413										HNSCC(36;0.09)			21	55					0	0	0.002299	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764688	92764688	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:92764688G>A	uc003umh.1	-	5	1813	c.597C>T	c.(595-597)TTC>TTT	p.F199F	SAMD9L_uc003umj.1_Silent_p.F199F|SAMD9L_uc003umi.1_Silent_p.F199F|SAMD9L_uc010lfb.1_Silent_p.F199F|SAMD9L_uc003umk.1_Silent_p.F199F|SAMD9L_uc010lfc.1_Silent_p.F199F|SAMD9L_uc010lfd.1_Silent_p.F199F|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	199										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGAGAGCTTTGAACTCATGTA	0.403													71	90					0	0	0.003610	0	0
SAMD9L	219285	broad.mit.edu	37	7	92765204	92765204	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:92765204A>G	uc003umh.1	-	5	1297	c.81T>C	c.(79-81)CTT>CTC	p.L27L	SAMD9L_uc003umj.1_Silent_p.L27L|SAMD9L_uc003umi.1_Silent_p.L27L|SAMD9L_uc010lfb.1_Silent_p.L27L|SAMD9L_uc003umk.1_Silent_p.L27L|SAMD9L_uc010lfc.1_Silent_p.L27L|SAMD9L_uc010lfd.1_Silent_p.L27L|SAMD9L_uc011khx.1_Silent_p.L18L	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	27	SAM.									ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CATTAATCTTAAGGTCTTCAT	0.383													97	40					0	0	0.003610	0	0
ASNS	440	broad.mit.edu	37	7	97482446	97482446	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:97482446C>T	uc003uot.3	-	12	1908	c.1402G>A	c.(1402-1404)GAA>AAA	p.E468K	ASNS_uc011kin.1_Missense_Mutation_p.E385K|ASNS_uc003uou.3_Missense_Mutation_p.E468K|ASNS_uc003uov.3_Missense_Mutation_p.E468K|ASNS_uc011kio.1_Missense_Mutation_p.E447K|ASNS_uc003uow.3_Missense_Mutation_p.E447K|ASNS_uc003uox.3_Missense_Mutation_p.E385K	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	468	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CTGAAGGCTTCTTTTGGTCGC	0.368													36	40					0	0	0.002836	0	0
TMEM130	222865	broad.mit.edu	37	7	98457957	98457957	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:98457957G>A	uc003upo.2	-	3	585	c.396C>T	c.(394-396)TTC>TTT	p.F132F	TMEM130_uc011kiq.1_Silent_p.F113F|TMEM130_uc011kir.1_Silent_p.F132F|TMEM130_uc003upn.2_Silent_p.F30F	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	132	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCCCCACGAGGAACTCTGGGA	0.557													16	40					0	0	0.004007	0	0
TRRAP	8295	broad.mit.edu	37	7	98565207	98565207	+	Silent	SNP	C	T	T	rs139721649		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:98565207C>T	uc003upp.2	+	50	7586	c.7377C>T	c.(7375-7377)TTC>TTT	p.F2459F	TRRAP_uc011kis.1_Silent_p.F2441F|TRRAP_uc003upr.2_Silent_p.F2158F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2459					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity	p.F2441F(2)|p.F2459F(1)		ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CAAAGTTTTTCGAGGTTTTTG	0.552													72	32					0	0	0.003610	0	0
TAF6	6878	broad.mit.edu	37	7	99708829	99708829	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:99708829T>C	uc003uti.2	-	10	1097	c.1016A>G	c.(1015-1017)CAG>CGG	p.Q339R	TAF6_uc003utg.2_Missense_Mutation_p.Q261R|TAF6_uc003uth.2_Missense_Mutation_p.Q396R|TAF6_uc003utk.2_Missense_Mutation_p.Q339R|TAF6_uc011kji.1_Missense_Mutation_p.Q376R|TAF6_uc003utj.2_Missense_Mutation_p.Q329R|TAF6_uc003utl.2_Missense_Mutation_p.Q339R|TAF6_uc003utm.2_Missense_Mutation_p.Q339R|TAF6_uc003utn.1_RNA	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	339					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTTGCAGATCTGGGCCACCAG	0.542													100	40					0	0	0.003610	0	0
STAG3	10734	broad.mit.edu	37	7	99798111	99798112	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:99798111_99798112CC>TT	uc003utx.1	+	18	1961_1962	c.1806_1807CC>TT	c.(1804-1809)CTCCAG>CTTTAG	p.Q603*	STAG3_uc010lgs.1_Nonsense_Mutation_p.Q391*|STAG3_uc011kjk.1_Nonsense_Mutation_p.Q545*|STAG3_uc003uub.1_5'Flank	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	603					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTCCCCTGCTCCAGCTTCTCAG	0.54													45	20					0	0	0.004672	0	0
STAG3	10734	broad.mit.edu	37	7	99802737	99802737	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:99802737C>T	uc003utx.1	+	28	3216	c.3061C>T	c.(3061-3063)CAT>TAT	p.H1021Y	STAG3_uc011kjk.1_Missense_Mutation_p.H963Y|GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|STAG3_uc003uub.1_Missense_Mutation_p.H245Y	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	1021					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCGACTCTTCCATCAGGACAA	0.537													200	81					0	0	0.003610	0	0
ZCWPW1	55063	broad.mit.edu	37	7	100001349	100001349	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:100001349C>T	uc003uut.2	-	15	1626	c.1378G>A	c.(1378-1380)GAA>AAA	p.E460K	ZCWPW1_uc011kjq.1_Missense_Mutation_p.E340K|ZCWPW1_uc003uur.2_Missense_Mutation_p.E340K|ZCWPW1_uc003uus.2_Missense_Mutation_p.E340K|ZCWPW1_uc011kjr.1_Missense_Mutation_p.E460K|ZCWPW1_uc003uuu.1_Missense_Mutation_p.E461K|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	460							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					tccaactcttcctctttctcc	0.224													7	35					0	0	0.001984	0	0
C7orf51	222950	broad.mit.edu	37	7	100087196	100087196	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:100087196G>A	uc003uvd.1	+	4	2011	c.1852G>A	c.(1852-1854)GAA>AAA	p.E618K	C7orf51_uc003uve.1_Missense_Mutation_p.E400K	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	618	Poly-Glu.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ACCAGAGGAGGAAGAAGAGGA	0.607													72	28					0	0	0.003610	0	0
ZAN	7455	broad.mit.edu	37	7	100373429	100373429	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:100373429G>A	uc003uwj.2	+	34	6331	c.6166G>A	c.(6166-6168)GAA>AAA	p.E2056K	ZAN_uc003uwk.2_Missense_Mutation_p.E2056K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.E143K	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2056	Extracellular (Potential).|VWFD 3.				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CTTAGAGATTGAAATCCCCAC	0.537													34	18					0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	7	100551597	100551597	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:100551597C>T	uc003uxk.1	+	1		c.848C>T			uc003uxl.1_Silent_p.I16I					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		ACACCCCAATCAGTTCCTTTA	0.502													12	391					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100675865	100675865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:100675865G>A	uc003uxp.1	+	3	1221	c.1168G>A	c.(1168-1170)GAA>AAA	p.E390K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	390	Extracellular (Potential).|59 X approximate tandem repeats.|4.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCTTAGTGAAGGAAGCAC	0.458													123	162					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100686068	100686068	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:100686068G>A	uc003uxp.1	+	3	11424	c.11371G>A	c.(11371-11373)GGC>AGC	p.G3791S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3791	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGCCTCTGAAGGCAGTTCATC	0.468													90	34					0	0	0.003610	0	0
CUX1	1523	broad.mit.edu	37	7	101844696	101844696	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:101844696C>T	uc003uyx.3	+	18	2157	c.2119C>T	c.(2119-2121)CGC>TGC	p.R707C	CUX1_uc003uys.3_Missense_Mutation_p.R718C|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	707	Potential.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TGACGCCATCCGCTCCATCCT	0.657													111	33					0	0	0.003610	0	0
CUX1	1523	broad.mit.edu	37	7	101845438	101845438	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:101845438A>G	uc003uyx.3	+	18	2899	c.2861A>G	c.(2860-2862)GAA>GGA	p.E954G	CUX1_uc003uys.3_Missense_Mutation_p.E965G|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	954	CUT 2.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						CAGGTTAAGGAAAAGCTGGCC	0.592													74	37					0	0	0.003610	0	0
CUX1	1523	broad.mit.edu	37	7	101882719	101882719	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:101882719C>T	uc003uyx.3	+	23	3780	c.3742C>T	c.(3742-3744)CGG>TGG	p.R1248W	CUX1_uc003uys.3_Missense_Mutation_p.R1259W|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1248	Homeobox.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GAAGAAACCCCGGGTGGTGCT	0.637													35	15					0	0	0.003271	0	0
RELN	5649	broad.mit.edu	37	7	103126644	103126644	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:103126644C>T	uc003vca.2	-	61	10143	c.9983G>A	c.(9982-9984)AGC>AAC	p.S3328N	RELN_uc010liz.2_Missense_Mutation_p.S3328N	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3328					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GTTTGGGTACCTTGCTCGAGT	0.488													70	24					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103236992	103236992	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:103236992C>T	uc003vca.2	-	25	3610	c.3450G>A	c.(3448-3450)GAG>GAA	p.E1150E	RELN_uc010liz.2_Silent_p.E1150E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1150					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GGACGCCCTCCTCTCTGCTGT	0.522													174	65					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103322673	103322673	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:103322673G>A	uc003vca.2	-	11	1339	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F	RELN_uc010liz.2_Silent_p.F393F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	393					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CATTTCCATGGAAATAAATGG	0.448													65	83					0	0	0.003610	0	0
LAMB1	3912	broad.mit.edu	37	7	107603371	107603371	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:107603371G>A	uc003vew.2	-	15	2171	c.1836C>T	c.(1834-1836)ATC>ATT	p.I612I	LAMB1_uc003vev.2_Silent_p.I636I|LAMB1_uc003vex.2_Silent_p.I612I|LAMB1_uc010ljn.1_Silent_p.I698I	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	612	Laminin IV type B.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCGAATTAGGATGTCGTACT	0.468													118	42					0	0	0.003610	0	0
DOCK4	9732	broad.mit.edu	37	7	111509675	111509675	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:111509675C>T	uc003vfx.2	-	21	2333	c.2064G>A	c.(2062-2064)CGG>CGA	p.R688R	DOCK4_uc003vfw.2_Silent_p.R129R|DOCK4_uc003vfy.2_Silent_p.R688R|DOCK4_uc003vga.1_Silent_p.R293R	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	688					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				CTTCTGTGATCCGGTCCACGT	0.423													49	20					0	0	0.003610	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519998	113519998	+	Silent	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:113519998G>T	uc010ljy.1	-	4	1180	c.1149C>A	c.(1147-1149)TCC>TCA	p.S383S		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	383					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTCCCTTTACGGAGCTTTCTG	0.398													51	161					4.0306e-16	4.50199e-16	0.003610	1	0
PPP1R3A	5506	broad.mit.edu	37	7	113520099	113520099	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:113520099G>A	uc010ljy.1	-	4	1079	c.1048C>T	c.(1048-1050)CCA>TCA	p.P350S		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	350					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						GCTTTATTTGGAAAATTGACT	0.373													75	78					0	0	0.003610	0	0
CFTR	1080	broad.mit.edu	37	7	117171169	117171169	+	Splice_Site	SNP	G	A	A	rs78756941		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:117171169G>A	uc003vjd.2	+	4	621	c.489_splice	c.e4+1	p.K163_splice	CFTR_uc011knq.1_Splice_Site	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance						respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTATAAGAAGGTAATACTTCC	0.383									Cystic_Fibrosis				19	3					0	0	0.008871	0	0
CFTR	1080	broad.mit.edu	37	7	117292956	117292956	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:117292956G>A	uc003vjd.2	+	24	4066	c.3934G>A	c.(3934-3936)GAT>AAT	p.D1312N	CFTR_uc011knq.1_Missense_Mutation_p.D718N	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1312	Cytoplasmic (Potential).|ABC transporter 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	ACAGTGGAGTGATCAAGAAAT	0.333									Cystic_Fibrosis				80	35					0	0	0.003610	0	0
TSPAN12	23554	broad.mit.edu	37	7	120446602	120446602	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:120446602C>T	uc003vjk.2	-	7	986	c.612_splice	c.e7+1	p.E204_splice	TSPAN12_uc010lkj.2_Splice_Site_p.E77_splice	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12						angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					TATGGCCTCACCTCTTGATAA	0.393													67	18					0	0	0.003610	0	0
C7orf58	79974	broad.mit.edu	37	7	120935629	120935629	+	Missense_Mutation	SNP	C	T	T	rs147434701	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:120935629C>T	uc003vjq.3	+	23	3451	c.3004C>T	c.(3004-3006)CAT>TAT	p.H1002Y		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	1002						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					ATCGCCATATCATGTCAGAGG	0.378													69	29					0	0	0.003610	0	0
CADPS2	93664	broad.mit.edu	37	7	121960387	121960387	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:121960387G>A	uc010lkp.2	-	29	3886	c.3723C>T	c.(3721-3723)ACC>ACT	p.T1241T	CADPS2_uc011knx.1_Silent_p.T616T|CADPS2_uc003vkg.3_Silent_p.T895T|CADPS2_uc010lkq.2_Silent_p.T1200T	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	1241					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						AGTCCCTGTAGGTTTTCTGAA	0.398													161	69					0	0	0.003610	0	0
TAS2R16	50833	broad.mit.edu	37	7	122635250	122635250	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:122635250C>T	uc003vkl.1	-	1	505	c.439G>A	c.(439-441)GGG>AGG	p.G147R		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	147	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						ATGTAATTCCCAATAGCTGAA	0.398													19	65					0	0	0.006122	0	0
TAS2R16	50833	broad.mit.edu	37	7	122635487	122635487	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:122635487A>C	uc003vkl.1	-	1	268	c.202T>G	c.(202-204)TTT>GTT	p.F68V		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	68	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						TAGGAGCAAAAATTGTTCAGC	0.403													18	70					0	0	0.008871	0	0
FLNC	2318	broad.mit.edu	37	7	128483492	128483492	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:128483492C>T	uc003vnz.3	+	18	2881	c.2672C>T	c.(2671-2673)ACG>ATG	p.T891M	FLNC_uc003voa.3_Missense_Mutation_p.T891M	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	891	Filamin 7.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						ACCCACTTCACGGTGCTGACC	0.612													13	47					0	0	0.002450	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129668810	129668810	+	Missense_Mutation	SNP	G	A	A	rs143076145	byFrequency	TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:129668810G>A	uc003vpi.2	-	5	580	c.553C>T	c.(553-555)CGT>TGT	p.R185C	ZC3HC1_uc003vph.2_Missense_Mutation_p.R72C|ZC3HC1_uc010lma.2_Missense_Mutation_p.R72C	NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	185	F-box-like.				cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					CTTTGAAAACGATCTAGGAAT	0.443													50	14					0	0	0.003610	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192929	132192929	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:132192929G>A	uc003vra.3	-	2	753	c.524C>T	c.(523-525)TCC>TTC	p.S175F	PLXNA4_uc003vrc.2_Missense_Mutation_p.S175F|PLXNA4_uc003vrb.2_Missense_Mutation_p.S175F	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	175	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GTTGCTGTAGGAGACGATCAC	0.532													27	77					0	0	0.005443	0	0
STRA8	346673	broad.mit.edu	37	7	134925449	134925449	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:134925449C>T	uc011kpx.1	+	2	239	c.239C>T	c.(238-240)TCT>TTT	p.S80F		NM_182489	NP_872295	Q7Z7C7	STRA8_HUMAN	STRA8	80					DNA replication|regulation of transcription, DNA-dependent	cytoplasm|nucleus					0						TACTCTCAGTCTGATCTCATA	0.602													69	37					0	0	0.003610	0	0
NUP205	23165	broad.mit.edu	37	7	135289098	135289098	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:135289098C>T	uc003vsw.2	+	19	2744	c.2713C>T	c.(2713-2715)CAT>TAT	p.H905Y		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	905					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						ATACCTATATCATGGCAATAC	0.303													31	20					0	0	0.009535	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	CT	CT	rs121913378		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:140453136_140453137AC>CT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AG	c.(1798-1800)GTG>AGG	p.V600R		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				53	23					0	0	0.004672	0	0
MGAM	8972	broad.mit.edu	37	7	141752740	141752740	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:141752740C>T	uc003vwy.2	+	26	3169	c.3115C>T	c.(3115-3117)CGC>TGC	p.R1039C		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1039	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GAACCCCCTTCGCCTGGATGT	0.458													62	18					0	0	0.003610	0	0
MGAM	8972	broad.mit.edu	37	7	141755373	141755373	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:141755373C>T	uc003vwy.2	+	28	3384	c.3330C>T	c.(3328-3330)CTC>CTT	p.L1110L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1110	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACTCTCAGCTCCTTGGCTTTA	0.458													109	41					0	0	0.003610	0	0
TRYX3	136541	broad.mit.edu	37	7	141952147	141952147	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:141952147C>T	uc003vxb.2	-	5	940	c.620G>A	c.(619-621)GGA>GAA	p.G207E	TRYX3_uc003vxc.3_Missense_Mutation_p.G207E	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	207	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					AGACAGGATTCCTTGAAGCAT	0.398													21	13					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	7	142001050	142001050	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:142001050C>T	uc011kro.1	+	2	187	c.142C>T	c.(142-144)CAC>TAC	p.H48Y						SubName: Full=V_segment translation product; Flags: Fragment;																		CATCTCTAATCACTTATACTT	0.433													18	13					0	0	0.006122	0	0
TRPV5	56302	broad.mit.edu	37	7	142609899	142609899	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:142609899G>A	uc003wby.1	-	13	1801	c.1537C>T	c.(1537-1539)CAG>TAG	p.Q513*		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	513	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TCCTCTGTCTGGAAAATGATA	0.463													56	84					0	0	0.003610	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919715	142919715	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:142919715G>A	uc011ksx.1	+	1	544	c.544G>A	c.(544-546)GAG>AAG	p.E182K		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	182	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					CAACTCCACGGAGAAGAAGTA	0.458													87	84					0	0	0.003610	0	0
FAM115C	285966	broad.mit.edu	37	7	143421817	143421817	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:143421817G>A	uc003wdf.2	+	7	2615	c.2532G>A	c.(2530-2532)AGG>AGA	p.R844R	FAM115C_uc003wdg.2_Silent_p.R563R|FAM115C_uc011ktk.1_Silent_p.R844R|FAM115C_uc003wdh.2_Silent_p.R844R|FAM115C_uc011ktm.1_Silent_p.R844R|uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron|FAM115C_uc011ktt.1_Intron|FAM115C_uc003wdi.1_Intron	NM_001130025	NP_001123497	A6NFQ2	F115C_HUMAN	hypothetical protein LOC285966 isoform A	Error:Variant_position_missing_in_A6NFQ2_after_alignment											0						CTGGGAGAAGGGGATGACCAG	0.577													73	61					0	0	0.003610	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453539	143453539	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:143453539C>T	uc003wdk.3	-	1	1305	c.1213G>A	c.(1213-1215)GAG>AAG	p.E405K	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	405	Potential.					integral to membrane					0	Melanoma(164;0.0903)					TAATTTTCCTCCACTGTTAAT	0.363													40	145					0	0	0.006999	0	0
OR2A14	135941	broad.mit.edu	37	7	143826740	143826740	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:143826740G>A	uc011kua.1	+	1	535	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CTTCTTCTGTGAAATCCTGTC	0.562													216	213					0	0	0.003610	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146741041	146741041	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:146741041G>A	uc003weu.1	+	4	961	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	149	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GGTCCGGCACGAATTACAGCA	0.423										HNSCC(39;0.1)			24	94					0	0	0.005443	0	0
ZNF862	643641	broad.mit.edu	37	7	149559258	149559258	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:149559258C>T	uc010lpn.2	+	7	3201	c.3009C>T	c.(3007-3009)CTC>CTT	p.L1003L	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	1003					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						CCCAGCACCTCCCGTTCTCCA	0.597													58	29					0	0	0.003610	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174541	150174541	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:150174541G>A	uc003whj.2	+	5	2001	c.1671G>A	c.(1669-1671)ACG>ACA	p.T557T		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	557						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CAGACTTTACGAAATACGCGA	0.493													96	33					0	0	0.003610	0	0
NOS3	4846	broad.mit.edu	37	7	150690932	150690932	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:150690932C>T	uc003wif.2	+	2	337	c.41C>T	c.(40-42)CCC>CTC	p.P14L	NOS3_uc011kuy.1_Intron|NOS3_uc011kuz.1_Missense_Mutation_p.P14L|NOS3_uc011kva.1_Missense_Mutation_p.P14L|NOS3_uc011kvb.1_Missense_Mutation_p.P14L	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	14					anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CCTGGGCCACCCTGCGGCCTG	0.692													28	10					0	0	0.002836	0	0
GBX1	2636	broad.mit.edu	37	7	150846056	150846056	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:150846056C>T	uc011kvg.1	-	2	944	c.712G>A	c.(712-714)GGA>AGA	p.G238R		NM_001098834	NP_001092304	Q14549	GBX1_HUMAN	gastrulation brain homeo box 1	238						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCCAGGCTTCCCTTTAGCTTC	0.642													48	185					0	0	0.003610	0	0
NUB1	51667	broad.mit.edu	37	7	151065825	151065825	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:151065825G>A	uc003wjx.2	+	11	1177	c.1172G>A	c.(1171-1173)CGT>CAT	p.R391H	NUB1_uc003wjw.2_Missense_Mutation_p.R367H|NUB1_uc010lqc.2_RNA|uc003wjz.1_5'Flank	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	367					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		CTCTAGGCACGTCAGCTCTTT	0.418											OREG0018452	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	168	65					0	0	0.003610	0	0
PRKAG2	51422	broad.mit.edu	37	7	151262925	151262925	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr7:151262925T>C	uc003wkk.2	-	12	1891	c.1280A>G	c.(1279-1281)GAG>GGG	p.E427G	PRKAG2_uc003wki.2_Missense_Mutation_p.E186G|PRKAG2_uc011kvl.1_Missense_Mutation_p.E302G|PRKAG2_uc003wkj.2_Missense_Mutation_p.E383G|PRKAG2_uc003wkl.2_Intron	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	427					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		TATTCCAAGCTCATCCAGGTT	0.438													19	165					0	0	0.001882	0	0
CSMD1	64478	broad.mit.edu	37	8	3443732	3443732	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:3443732C>T	uc011kwk.1	-	9	1541	c.1151G>A	c.(1150-1152)GGA>GAA	p.G384E		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	384	Extracellular (Potential).|Sushi 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCTTTTAGATCCCTGGAGCAC	0.463													8	25					0	0	0.003080	0	0
XKR5	389610	broad.mit.edu	37	8	6682705	6682706	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:6682705_6682706AG>GA	uc003wqp.2	-	3	430_431	c.408_409CT>TC	c.(406-411)GACTTC>GATCTC	p.F137L	XKR5_uc003wqq.2_5'UTR|XKR5_uc003wqr.1_RNA	NM_207411	NP_997294	Q6UX68	XKR5_HUMAN	XK-related protein 5a	137						integral to membrane					0			STAD - Stomach adenocarcinoma(24;0.0984)	READ - Rectum adenocarcinoma(644;0.137)|COAD - Colon adenocarcinoma(149;0.166)		ATATCTGTGAAGTCTGAGGCTA	0.559													18	42					0	0	0.004672	0	0
SGK223	157285	broad.mit.edu	37	8	8235327	8235327	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:8235327G>A	uc003wsh.3	-	2	592	c.592C>T	c.(592-594)CAA>TAA	p.Q198*		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	198							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GGCCGGTCTTGGTAAGGAAAT	0.617													36	79					0	0	0.005524	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998385	8998385	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:8998385G>A	uc003wsn.3	-	2	942	c.777C>T	c.(775-777)TTC>TTT	p.F259F	PPP1R3B_uc003wso.3_Silent_p.F258F	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	259					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		GAGGGCTTCCGAACTGGTCAA	0.507													22	45					0	0	0.002780	0	0
RP1L1	94137	broad.mit.edu	37	8	10465331	10465331	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:10465331C>T	uc003wtc.2	-	4	6506	c.6277G>A	c.(6277-6279)GAG>AAG	p.E2093K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2093					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGCTGGGCCTCCCCTTCTGCC	0.627													54	126					0	0	0.003610	0	0
RP1L1	94137	broad.mit.edu	37	8	10480260	10480260	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:10480260G>A	uc003wtc.2	-	2	681	c.452C>T	c.(451-453)CCC>CTC	p.P151L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	151					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TATCCTCCGGGGGGTTTTAAG	0.582													29	62					0	0	0.008361	0	0
SOX7	83595	broad.mit.edu	37	8	10583900	10583900	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:10583900G>A	uc003wtf.2	-	2	594	c.515C>T	c.(514-516)CCC>CTC	p.P172L	SOX7_uc011kwz.1_Missense_Mutation_p.P224L|uc003wtg.1_5'Flank	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	172					endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		CCGGAGGCTGGGCAGGGCAGT	0.731													10	19					0	0	0.006214	0	0
XKR6	286046	broad.mit.edu	37	8	10755744	10755744	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:10755744C>T	uc003wtk.1	-	3	1671	c.1644G>A	c.(1642-1644)ACG>ACA	p.T548T		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	548						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		CCTGTTGTTCCGTTACGGCTC	0.627													13	52					0	0	0.001855	0	0
USP17L2	377630	broad.mit.edu	37	8	11996035	11996035	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:11996035C>T	uc003wvc.1	-	1	235	c.235G>A	c.(235-237)GGG>AGG	p.G79R	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	79					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						AGCCCAGCCCCCACCGCAGCA	0.582													19	110					0	0	0.002780	0	0
MTMR7	9108	broad.mit.edu	37	8	17188763	17188763	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:17188763C>T	uc003wxm.2	-	7	1000	c.761G>A	c.(760-762)GGG>GAG	p.G254E	MTMR7_uc003wxn.2_Missense_Mutation_p.G33E	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	254	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		ATAGCCTTTCCCTGCAGCACG	0.383													8	27					0	0	0.003080	0	0
PCM1	5108	broad.mit.edu	37	8	17819629	17819629	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:17819629C>T	uc003wyi.3	+	16	2831	c.2409C>T	c.(2407-2409)ACC>ACT	p.T803T	PCM1_uc011kyh.1_Silent_p.T803T|PCM1_uc003wyj.3_Silent_p.T804T	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	803					centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		AACACGAGACCAGTACAAGCA	0.378			T	RET|JAK2	papillary thyroid|CML|MPD								4	20					0	0	0.009096	0	0
NAT2	10	broad.mit.edu	37	8	18257721	18257721	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:18257721C>T	uc003wyw.1	+	2	315	c.208C>T	c.(208-210)CAG>TAG	p.Q70*		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	70					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		GTGGTGTCTCCAGGTCAATCA	0.453									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				34	97					0	0	0.004289	0	0
SLC18A1	6570	broad.mit.edu	37	8	20028949	20028949	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:20028949G>A	uc011kyq.1	-	8	1252	c.781C>T	c.(781-783)CTC>TTC	p.L261F	SLC18A1_uc003wzl.2_Missense_Mutation_p.L48F|SLC18A1_uc003wzm.2_Missense_Mutation_p.L261F|SLC18A1_uc011kyr.1_Missense_Mutation_p.L261F|SLC18A1_uc003wzn.2_Missense_Mutation_p.L261F|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.L261F	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	261	Helical; (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		GCCAGGATGAGGAAGGGTGCA	0.532													21	101					0	0	0.003330	0	0
DOK2	9046	broad.mit.edu	37	8	21767128	21767128	+	Silent	SNP	C	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:21767128C>A	uc003wzy.1	-	5	1026	c.933G>T	c.(931-933)GGG>GGT	p.G311G	DOK2_uc003wzx.1_Silent_p.G311G|DOK2_uc003wzz.1_Silent_p.G157G|DOK2_uc010lth.1_Silent_p.G157G	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	311					blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		TGAAGTTCTTCCCCAAGGAAC	0.657													35	60					1.69901e-12	1.89411e-12	0.005524	1	0
BMP1	649	broad.mit.edu	37	8	22065004	22065004	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:22065004G>A	uc003xbg.2	+	18	2794	c.2550G>A	c.(2548-2550)AAG>AAA	p.K850K	BMP1_uc011kzc.1_Silent_p.K599K|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	850	CUB 4.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		TCCAGCGAAAGGGCTTCCAGG	0.622													16	40					0	0	0.003163	0	0
LOXL2	4017	broad.mit.edu	37	8	23186040	23186040	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:23186040C>T	uc003xdh.1	-	6	1344	c.1005G>A	c.(1003-1005)GGG>GGA	p.G335G		NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	335	SRCR 3.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		CGCGGCCCTCCCCGATGTAGG	0.622													17	56					0	0	0.004990	0	0
ADAM28	10863	broad.mit.edu	37	8	24193082	24193082	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:24193082C>T	uc003xdy.2	+	14	1578	c.1495C>T	c.(1495-1497)CAC>TAC	p.H499Y	ADAM28_uc003xdx.2_Missense_Mutation_p.H499Y|ADAM28_uc011kzz.1_Missense_Mutation_p.H266Y|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.H186Y	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	499	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CCCTTGCCATCACGGGAAGGG	0.527													10	18					0	0	0.008291	0	0
ADAM28	10863	broad.mit.edu	37	8	24199265	24199265	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:24199265A>T	uc003xdy.2	+	16	1908	c.1825A>T	c.(1825-1827)AAC>TAC	p.N609Y	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.N296Y	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	609	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GTGTGGCGATAACAAGGTAAG	0.398													35	50					0	0	0.003755	0	0
ADAM28	10863	broad.mit.edu	37	8	24200644	24200644	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:24200644G>A	uc003xdy.2	+	17	1944	c.1861G>A	c.(1861-1863)GAG>AAG	p.E621K	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.E308K	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	621	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TGTGGATATTGAGAAAGCCTA	0.378													21	45					0	0	0.003330	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256521	24256521	+	Silent	SNP	G	A	A	rs141164035		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:24256521G>A	uc003xdz.2	+	9	1117	c.897G>A	c.(895-897)GGG>GGA	p.G299G	ADAMDEC1_uc010lub.2_Silent_p.G220G|ADAMDEC1_uc011lab.1_Silent_p.G220G	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	299	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding	p.G299G(1)		skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CTAACCTGGGGAAAAAGATCC	0.512													14	44					0	0	0.003163	0	0
STMN4	81551	broad.mit.edu	37	8	27101227	27101227	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:27101227C>T	uc003xfk.2	-	2	127	c.13_splice	c.e2+1	p.A5_splice	STMN4_uc003xfj.2_Splice_Site_p.A5_splice|STMN4_uc011lai.1_Splice_Site_p.A5_splice|STMN4_uc011laj.1_Intron|STMN4_uc011lak.1_Splice_Site_p.A5_splice|STMN4_uc010luo.2_Splice_Site_p.A5_splice			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;						intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		TTTGTACCTACCAGCAAGGGT	0.522													17	54					0	0	0.006122	0	0
PTK2B	2185	broad.mit.edu	37	8	27278190	27278190	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:27278190C>T	uc003xfn.1	+	9	1208	c.400C>T	c.(400-402)CGC>TGC	p.R134C	PTK2B_uc003xfo.1_Missense_Mutation_p.R134C|PTK2B_uc003xfp.1_Missense_Mutation_p.R134C|PTK2B_uc003xfq.1_Missense_Mutation_p.R134C	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	134	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		CCTTCAAATCCGCTACTTGCC	0.493													32	75					0	0	0.006230	0	0
EXTL3	2137	broad.mit.edu	37	8	28574084	28574084	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:28574084C>T	uc003xgz.1	+	3	1101	c.508C>T	c.(508-510)CCC>TCC	p.P170S		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	170	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		CGGCCTCCCTCCCCCGAAGGC	0.607													18	36					0	0	0.008871	0	0
EXTL3	2137	broad.mit.edu	37	8	28575536	28575536	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:28575536C>T	uc003xgz.1	+	3	2553	c.1960C>T	c.(1960-1962)CTT>TTT	p.L654F		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	654	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TCAGGCAGCGCTTGGAGGCAA	0.557													23	29					0	0	0.002299	0	0
Unknown	0	broad.mit.edu	37	8	30209946	30209946	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:30209946G>A	uc003xhz.2	+	1	428	c.423G>A	c.(421-423)GGG>GGA	p.G141G						SubName: Full=Class IVb beta tubulin;																		CACTGGGTGGGGGCACAGGCT	0.567													13	23					0	0	0.001855	0	0
TEX15	56154	broad.mit.edu	37	8	30701385	30701385	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:30701385G>A	uc003xil.2	-	1	5149	c.5149C>T	c.(5149-5151)CGA>TGA	p.R1717*		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1717										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AGCAAGCTTCGCAATGTTGGT	0.388													25	47					0	0	0.003330	0	0
UNC5D	137970	broad.mit.edu	37	8	35631906	35631906	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:35631906C>T	uc003xjr.1	+	16	2896	c.2568C>T	c.(2566-2568)TCC>TCT	p.S856S	UNC5D_uc003xjs.1_Silent_p.S851S|UNC5D_uc003xju.1_Silent_p.S432S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	856	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TTCCCTACTCCATCAGACAGC	0.463													28	57					0	0	0.006320	0	0
BAG4	9530	broad.mit.edu	37	8	38067760	38067760	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:38067760A>G	uc003xky.1	+	5	1405	c.1123A>G	c.(1123-1125)AGT>GGT	p.S375G	BAG4_uc003xkz.1_Missense_Mutation_p.S339G	NM_004874	NP_004865	O95429	BAG4_HUMAN	BCL2-associated athanogene 4	375					anti-apoptosis|apoptosis|protein folding	cytoplasm|nucleus	receptor signaling protein activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.121)				TTCAGATGAAAGTACTCCTCC	0.408													15	45					0	0	0.004007	0	0
ADAM32	203102	broad.mit.edu	37	8	39112000	39112000	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:39112000C>T	uc003xmt.3	+	18	2215	c.1970C>T	c.(1969-1971)TCC>TTC	p.S657F	ADAM32_uc011lch.1_Missense_Mutation_p.S558F|ADAM32_uc003xmu.3_Missense_Mutation_p.S551F|ADAM32_uc003xmv.2_Missense_Mutation_p.S81F	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	657	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			CAAATACGTTCCAAAGGATTT	0.343													7	7					0	0	0.001984	0	0
ADAM18	8749	broad.mit.edu	37	8	39495093	39495093	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:39495093C>T	uc003xni.2	+	9	698	c.698C>T	c.(697-699)TCC>TTC	p.S233F	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.S209F	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	233	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ATACTGTCTTCCTTGGAATTG	0.323													16	27					0	0	0.004007	0	0
ANK1	286	broad.mit.edu	37	8	41566302	41566302	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:41566302C>T	uc003xok.2	-	17	2076	c.1992G>A	c.(1990-1992)GGG>GGA	p.G664G	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_5'Flank|ANK1_uc003xoi.2_Silent_p.G664G|ANK1_uc003xoj.2_Silent_p.G664G|ANK1_uc003xol.2_Silent_p.G664G|ANK1_uc003xom.2_Silent_p.G697G	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	664	89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CTACCTTGTTCCCCAGGTTGC	0.493													38	90					0	0	0.009718	0	0
MYST3	7994	broad.mit.edu	37	8	41832276	41832276	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:41832276G>A	uc010lxb.2	-	9	1972	c.1428C>T	c.(1426-1428)ATC>ATT	p.I476I	MYST3_uc010lxc.2_Silent_p.I476I|MYST3_uc003xon.3_Silent_p.I476I|MYST3_uc010lxd.2_Silent_p.I476I	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	476	Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TCTCAGTCATGATTTCCTGGC	0.398													19	45					0	0	0.006122	0	0
MCM4	4173	broad.mit.edu	37	8	48885587	48885587	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:48885587C>T	uc003xqk.1	+	14	2194	c.2099C>T	c.(2098-2100)CCG>CTG	p.P700L	MCM4_uc003xql.1_Missense_Mutation_p.P700L|MCM4_uc011ldi.1_Missense_Mutation_p.P687L	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	700					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				ACCATCATGCCGCGGCTAAGT	0.552													7	32					0	0	0.001984	0	0
PXDNL	137902	broad.mit.edu	37	8	52321488	52321489	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:52321488_52321489AC>TT	uc003xqu.3	-	17	2796_2797	c.2695_2696GT>AA	c.(2695-2697)GTT>AAT	p.V899N	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	899					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GCTCCCGTAAACGTTGGAGCCA	0.624													18	49					0	0	0.004672	0	0
ST18	9705	broad.mit.edu	37	8	53030941	53030941	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:53030941G>A	uc003xqz.2	-	19	2972	c.2816C>T	c.(2815-2817)TCC>TTC	p.S939F	ST18_uc011ldq.1_Missense_Mutation_p.S586F|ST18_uc011ldr.1_Missense_Mutation_p.S904F|ST18_uc011lds.1_Missense_Mutation_p.S844F|ST18_uc003xra.2_Missense_Mutation_p.S939F	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	939	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TTTAAGGTTGGATTCATTCAG	0.323													14	52					0	0	0.003163	0	0
OPRK1	4986	broad.mit.edu	37	8	54141918	54141918	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:54141918C>T	uc003xrh.1	-	3	1457	c.1082G>A	c.(1081-1083)CGA>CAA	p.R361Q	OPRK1_uc003xri.1_Missense_Mutation_p.R361Q|OPRK1_uc010lyc.1_Missense_Mutation_p.R272Q	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	361	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	AACTGTATTTCGGACTCTGCT	0.478													19	48					0	0	0.008871	0	0
RP1	6101	broad.mit.edu	37	8	55539327	55539327	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:55539327G>A	uc003xsd.1	+	4	3033	c.2885G>A	c.(2884-2886)GGA>GAA	p.G962E	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	962					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACAAATTCTGGAAAAATAAGT	0.313													20	44					0	0	0.010504	0	0
PENK	5179	broad.mit.edu	37	8	57354068	57354068	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:57354068G>A	uc003xsz.2	-	2	648	c.567C>T	c.(565-567)TTC>TTT	p.F189F	PENK_uc003xta.3_Silent_p.F189F	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	189					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			AGCCTCTCATGAAGCCCCCAT	0.517													70	122					0	0	0.003610	0	0
CLVS1	157807	broad.mit.edu	37	8	62412056	62412056	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:62412056G>A	uc003xuh.2	+	6	1344	c.1020G>A	c.(1018-1020)GAG>GAA	p.E340E	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_3'UTR	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	340					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						AACATGAGGAGAAGGGAGAGA	0.507													14	45					0	0	0.004007	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66989093	66989093	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:66989093G>A	uc003xvs.1	+	4	609	c.318G>A	c.(316-318)TCG>TCA	p.S106S	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	106					protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			TCATGCTGTCGAGCTGGTGGG	0.428													29	61					0	0	0.008361	0	0
C8orf34	116328	broad.mit.edu	37	8	69381046	69381046	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:69381046C>T	uc010lyz.2	+	4	518	c.469C>T	c.(469-471)CTC>TTC	p.L157F	C8orf34_uc010lyy.1_Missense_Mutation_p.L157F|C8orf34_uc003xyb.2_Missense_Mutation_p.L132F	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	157					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CCTTGAGAATCTCTCTCGAAG	0.388													4	29					0	0	0.000602	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70585331	70585331	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:70585331C>T	uc003xyl.2	-	10	3027	c.2320G>A	c.(2320-2322)GAA>AAA	p.E774K	SLCO5A1_uc010lzb.2_Missense_Mutation_p.E719K|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	774	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			AGGGGAAATTCTCTCTGCCTC	0.517													35	67					0	0	0.006230	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70744059	70744059	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:70744059G>A	uc003xyl.2	-	2	1557	c.850C>T	c.(850-852)CTG>TTG	p.L284L	SLCO5A1_uc010lzb.2_Silent_p.L284L|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Silent_p.L284L|SLCO5A1_uc010lzc.2_Silent_p.L284L	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	284	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			GTTGGTCCCAGGGTATAAATA	0.448													21	54					0	0	0.008871	0	0
EYA1	2138	broad.mit.edu	37	8	72127689	72127689	+	Silent	SNP	C	T	T	rs147434089		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:72127689C>T	uc003xys.3	-	15	1817	c.1530G>A	c.(1528-1530)GCG>GCA	p.A510A	EYA1_uc003xyr.3_Silent_p.A475A|EYA1_uc003xyt.3_Silent_p.A477A|EYA1_uc010lzf.2_Silent_p.A437A|EYA1_uc003xyu.2_Silent_p.A510A|EYA1_uc011lfe.1_Silent_p.A504A|EYA1_uc003xyv.2_Silent_p.A388A	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	510					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GCAGGACTTTCGCCAATGCTG	0.338													31	66					0	0	0.005524	0	0
KCNB2	9312	broad.mit.edu	37	8	73479983	73479983	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:73479983C>T	uc003xzb.2	+	2	602	c.14C>T	c.(13-15)GCT>GTT	p.A5V		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	5	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GCAGAAAAGGCTCCCCCGGGC	0.507													25	70					0	0	0.004656	0	0
KCNB2	9312	broad.mit.edu	37	8	73849114	73849114	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:73849114C>T	uc003xzb.2	+	3	2112	c.1524C>T	c.(1522-1524)TTC>TTT	p.F508F		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	508	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACAAGTCTTTCGAGAATAAGT	0.547													28	91					0	0	0.007291	0	0
LY96	23643	broad.mit.edu	37	8	74917030	74917030	+	Splice_Site	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:74917030G>A	uc003yad.2	+	2	204	c.113_splice	c.e2-1	p.D38_splice		NM_015364	NP_056179	Q9Y6Y9	LY96_HUMAN	MD-2 protein precursor						cellular defense response|detection of lipopolysaccharide|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	extracellular space|lipopolysaccharide receptor complex|plasma membrane	coreceptor activity|lipopolysaccharide receptor activity|protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0208)|BRCA - Breast invasive adenocarcinoma(89;0.0499)|all cancers(69;0.0619)			ATTGCTTTTAGATAAAATGCA	0.269													15	49					0	0	0.003163	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616716	77616716	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:77616716C>T	uc003yav.2	+	2	780	c.393C>T	c.(391-393)ATC>ATT	p.I131I	ZFHX4_uc003yat.1_Silent_p.I131I|ZFHX4_uc003yau.1_Silent_p.I131I|ZFHX4_uc003yaw.1_Silent_p.I131I	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	131						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGGGGAGATCGTTTACCAGC	0.493										HNSCC(33;0.089)			32	46					0	0	0.008361	0	0
ZFHX4	79776	broad.mit.edu	37	8	77765850	77765850	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:77765850G>A	uc003yav.2	+	10	6945	c.6558G>A	c.(6556-6558)ACG>ACA	p.T2186T	ZFHX4_uc003yau.1_Silent_p.T2231T|ZFHX4_uc003yaw.1_Silent_p.T2186T	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2186	Homeobox 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTTCTAGAACGAGATTTACTG	0.383										HNSCC(33;0.089)			21	35					0	0	0.008871	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767304	77767304	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:77767304C>T	uc003yav.2	+	10	8399	c.8012C>T	c.(8011-8013)TCC>TTC	p.S2671F	ZFHX4_uc003yau.1_Missense_Mutation_p.S2716F|ZFHX4_uc003yaw.1_Missense_Mutation_p.S2671F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2671						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CCTTTAATATCCACCGAAGAT	0.433										HNSCC(33;0.089)			15	36					0	0	0.006122	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767855	77767855	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:77767855G>A	uc003yav.2	+	10	8950	c.8563G>A	c.(8563-8565)GAA>AAA	p.E2855K	ZFHX4_uc003yau.1_Missense_Mutation_p.E2900K|ZFHX4_uc003yaw.1_Missense_Mutation_p.E2855K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2855						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CGACCGCAGCGAAACGTCCAG	0.512										HNSCC(33;0.089)			10	34					0	0	0.008291	0	0
CA3	761	broad.mit.edu	37	8	86352060	86352060	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:86352060G>A	uc003ydj.2	+	2	237	c.154G>A	c.(154-156)GAT>AAT	p.D52N	CA13_uc003ydf.1_RNA|CA3_uc011lfv.1_RNA	NM_005181	NP_005172	P07451	CAH3_HUMAN	carbonic anhydrase III	52					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0						TGTGTCTTATGATGGTGGCTC	0.463													16	46					0	0	0.004007	0	0
SLC26A7	115111	broad.mit.edu	37	8	92346639	92346639	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:92346639G>T	uc003yex.2	+	7	1037	c.759G>T	c.(757-759)AGG>AGT	p.R253S	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.R253S|SLC26A7_uc003yfa.2_Missense_Mutation_p.R253S	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	253	Extracellular (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			AGTTTAAAAGGAAAATTAAAG	0.363													6	34					0.00116845	0.00129279	0.001168	1	0
RUNX1T1	862	broad.mit.edu	37	8	92983071	92983071	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:92983071C>G	uc003yfd.2	-	10	1438	c.1354G>C	c.(1354-1356)GCC>CCC	p.A452P	RUNX1T1_uc003yfc.1_Missense_Mutation_p.A425P|RUNX1T1_uc003yfe.1_Missense_Mutation_p.A415P|RUNX1T1_uc010mao.2_Missense_Mutation_p.A425P|RUNX1T1_uc011lgi.1_Missense_Mutation_p.A463P|RUNX1T1_uc010man.1_Missense_Mutation_p.A77P|RUNX1T1_uc003yfb.1_Missense_Mutation_p.A415P	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	452					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TCATTGACGGCCTCCTCTGTG	0.507													7	27					0	0	0.006214	0	0
KIAA1429	25962	broad.mit.edu	37	8	95550487	95550487	+	Splice_Site	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:95550487C>T	uc003ygo.1	-	3	279	c.266_splice	c.e3+1	p.S89_splice	KIAA1429_uc003ygp.2_Splice_Site_p.S89_splice	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1						mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			CAGGTACATACCTTCCCAACC	0.378													27	80					0	0	0.002096	0	0
TSPYL5	85453	broad.mit.edu	37	8	98289664	98289664	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:98289664G>A	uc003yhy.2	-	1	513	c.409C>T	c.(409-411)CGC>TGC	p.R137C		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	137					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					TTTCCAACGCGGGGGGCATTT	0.677													15	26					0	0	0.002450	0	0
COX6C	1345	broad.mit.edu	37	8	100904221	100904221	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:100904221C>T	uc003yiy.1	-	2	89	c.29G>A	c.(28-30)CGG>CAG	p.R10Q		NM_004374	NP_004365	P09669	COX6C_HUMAN	cytochrome c oxidase subunit VIc proprotein	10	Mitochondrial matrix (By similarity).				respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	cytochrome-c oxidase activity		HMGA2/COX6C(2)	soft_tissue(2)	2			all cancers(13;8.32e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GCCACGCATCCGAGGTTTTGG	0.368			T	HMGA2	uterine leiomyoma								45	102					0	0	0.008740	0	0
RGS22	26166	broad.mit.edu	37	8	101075756	101075756	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:101075756C>T	uc003yjb.1	-	8	1435	c.1240G>A	c.(1240-1242)GAG>AAG	p.E414K	RGS22_uc003yja.1_Missense_Mutation_p.E233K|RGS22_uc003yjc.1_Missense_Mutation_p.E402K|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	414					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CTTTCAAACTCCTTTCTATTG	0.388													26	78					0	0	0.003954	0	0
UBR5	51366	broad.mit.edu	37	8	103372302	103372302	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:103372302A>G	uc003ykr.1	-	5	416	c.383T>C	c.(382-384)TTA>TCA	p.L128S	UBR5_uc003yks.1_Missense_Mutation_p.L128S	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	128					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AACTTACCCTAAGGTGTTGCC	0.507													14	39					0	0	0.002450	0	0
DCAF13	25879	broad.mit.edu	37	8	104427557	104427557	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:104427557C>T	uc003yln.2	+	1	616	c.339C>T	c.(337-339)TCC>TCT	p.S113S	SLC25A32_uc003yll.2_5'Flank|SLC25A32_uc011lhr.1_5'Flank|DCAF13_uc003ylm.1_5'UTR|DCAF13_uc003ylo.2_5'UTR	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	Error:Variant_position_missing_in_Q9NV06_after_alignment					rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						GCCGCCGCTCCGCGAGTCACG	0.637													18	36					0	0	0.004990	0	0
DPYS	1807	broad.mit.edu	37	8	105405031	105405031	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:105405031C>T	uc003yly.3	-	8	1553	c.1424G>A	c.(1423-1425)CGA>CAA	p.R475Q	DPYS_uc010mcf.1_Missense_Mutation_p.R45Q	NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	475					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTGCTTTATTCGTTTGTAAAT	0.473													58	105					0	0	0.003610	0	0
ZFPM2	23414	broad.mit.edu	37	8	106573624	106573624	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:106573624G>A	uc003ymd.2	+	4	358	c.335G>A	c.(334-336)CGA>CAA	p.R112Q		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	112					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GATGGGGAACGAAAAATTCAG	0.438													21	32					0	0	0.002299	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814320	106814320	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:106814320G>A	uc003ymd.2	+	8	2033	c.2010G>A	c.(2008-2010)GTG>GTA	p.V670V	ZFPM2_uc011lhs.1_Silent_p.V401V	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	670					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTGTTGATGTGAAAAATCCCA	0.443													10	20					0	0	0.006214	0	0
ABRA	137735	broad.mit.edu	37	8	107773536	107773536	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:107773536C>T	uc003ymm.3	-	2	929	c.875G>A	c.(874-876)GGA>GAA	p.G292E		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	292					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			AGTTTTGGTTCCTTCTTTGGG	0.517													20	43					0	0	0.010504	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110464385	110464385	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:110464385C>T	uc003yne.2	+	42	6487	c.6383C>T	c.(6382-6384)GCT>GTT	p.A2128V		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2128	IPT/TIG 14.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATCACCATAGCTGAAGCCAAA	0.398										HNSCC(38;0.096)			11	33					0	0	0.000978	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110478830	110478830	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:110478830C>T	uc003yne.2	+	50	8541	c.8437C>T	c.(8437-8439)CCA>TCA	p.P2813S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2813	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TACCGTCATTCCACACAGCTC	0.408										HNSCC(38;0.096)			5	14					0	0	0.000602	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110520326	110520326	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:110520326G>A	uc003yne.2	+	70	11332	c.11228G>A	c.(11227-11229)GGA>GAA	p.G3743E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3743	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATGTTTCTAGGAATTATTAGA	0.323										HNSCC(38;0.096)			10	36					0	0	0.006214	0	0
CSMD3	114788	broad.mit.edu	37	8	113246664	113246664	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:113246664T>G	uc003ynu.2	-	68	10829	c.10670A>C	c.(10669-10671)TAT>TCT	p.Y3557S	CSMD3_uc003yns.2_Missense_Mutation_p.Y2759S|CSMD3_uc003ynt.2_Missense_Mutation_p.Y3517S|CSMD3_uc011lhx.1_Missense_Mutation_p.Y3388S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3557	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTTAATAAGATATATGCGTAA	0.338										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			44	100					0	0	0.003610	0	0
CSMD3	114788	broad.mit.edu	37	8	113299325	113299325	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:113299325C>T	uc003ynu.2	-	58	9458	c.9299G>A	c.(9298-9300)GGC>GAC	p.G3100D	CSMD3_uc003yns.2_Missense_Mutation_p.G2302D|CSMD3_uc003ynt.2_Missense_Mutation_p.G3060D|CSMD3_uc011lhx.1_Missense_Mutation_p.G2931D	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3100	Extracellular (Potential).|Sushi 22.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GGTCCAACTGCCATTAGCTAA	0.388										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			24	62					0	0	0.002780	0	0
CSMD3	114788	broad.mit.edu	37	8	113871469	113871469	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:113871469C>G	uc003ynu.2	-	11	1819	c.1660G>C	c.(1660-1662)GGA>CGA	p.G554R	CSMD3_uc003ynt.2_Missense_Mutation_p.G514R|CSMD3_uc011lhx.1_Missense_Mutation_p.G450R	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	554	Extracellular (Potential).|CUB 3.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCACTTGGTCCTTGAAGATTA	0.358										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			16	39					0	0	0.003163	0	0
CSMD3	114788	broad.mit.edu	37	8	114031403	114031403	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:114031403G>A	uc003ynu.2	-	6	1082	c.923C>T	c.(922-924)TCT>TTT	p.S308F	CSMD3_uc003ynt.2_Missense_Mutation_p.S268F|CSMD3_uc011lhx.1_Missense_Mutation_p.S308F|CSMD3_uc010mcx.1_Missense_Mutation_p.S308F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	308	Extracellular (Potential).|CUB 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATTCATTCCAGATAACCTGAA	0.353										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			27	49					0	0	0.006320	0	0
TRPS1	7227	broad.mit.edu	37	8	116599255	116599255	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:116599255G>A	uc003ynz.2	-	4	3093	c.2634C>T	c.(2632-2634)TCC>TCT	p.S878S	TRPS1_uc011lhy.1_Silent_p.S882S|TRPS1_uc003yny.2_Silent_p.S891S|TRPS1_uc010mcy.2_Silent_p.S878S	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	878					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			ATTCATCCTTGGACTTGTTTT	0.502									Langer-Giedion_syndrome				22	51					0	0	0.002780	0	0
DERL1	79139	broad.mit.edu	37	8	124033698	124033698	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:124033698G>A	uc003ypl.2	-	6	781	c.495C>T	c.(493-495)ATC>ATT	p.I165I	DERL1_uc003ypm.2_Silent_p.I165I|DERL1_uc011lif.1_Silent_p.I65I|DERL1_uc003ypn.2_Silent_p.I165I	NM_024295	NP_077271	Q9BUN8	DERL1_HUMAN	Der1-like domain family, member 1 isoform a	165	Helical; Name=4; (Potential).				endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|intracellular transport of viral proteins in host cell|retrograde protein transport, ER to cytosol	integral to endoplasmic reticulum membrane	MHC class I protein binding|receptor activity				0	Lung NSC(37;1.06e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			AGCCTCCGATGATATAGTTGA	0.363													28	68					0	0	0.009535	0	0
ZHX1	11244	broad.mit.edu	37	8	124267897	124267897	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:124267897A>C	uc003yqe.2	-	3	720	c.290T>G	c.(289-291)GTG>GGG	p.V97G	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.V97G|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.V97G	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	97					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TGAATTTAGCACTACATTGGG	0.333													22	65					0	0	0.001882	0	0
ATAD2	29028	broad.mit.edu	37	8	124408489	124408489	+	Silent	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:124408489T>G	uc003yqh.3	-	1	217	c.109A>C	c.(109-111)AGG>CGG	p.R37R	ATAD2_uc011lii.1_5'UTR|ATAD2_uc003yqi.3_Intron|ATAD2_uc003yqj.2_Silent_p.R37R	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	37					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CGGAGCCGCCTCCGGCCGATG	0.706													4	6					0	0	0.009096	0	0
FAM91A1	157769	broad.mit.edu	37	8	124797890	124797890	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:124797890C>T	uc003yqv.2	+	11	932	c.871C>T	c.(871-873)CGA>TGA	p.R291*	FAM91A1_uc011lik.1_Nonsense_Mutation_p.R291*|FAM91A1_uc011lil.1_Nonsense_Mutation_p.R49*	NM_144963	NP_659400	Q658Y4	F91A1_HUMAN	hypothetical protein LOC157769	291										ovary(1)|central_nervous_system(1)	2	Lung NSC(37;8.76e-13)|Ovarian(258;0.00744)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00192)			AATGTATTGCCGATTGGGCTT	0.308													19	51					0	0	0.003330	0	0
FER1L6	654463	broad.mit.edu	37	8	125061927	125061927	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:125061927T>A	uc003yqw.2	+	22	3010	c.2804T>A	c.(2803-2805)TTA>TAA	p.L935*	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	935	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CCCCCCAGGTTATGCTATCAC	0.502													29	52					0	0	0.007291	0	0
FER1L6	654463	broad.mit.edu	37	8	125103708	125103708	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:125103708T>A	uc003yqw.2	+	34	4642	c.4436T>A	c.(4435-4437)ATC>AAC	p.I1479N	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1479	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CCCACCGAAATCCTCACTAAG	0.453													24	51					0	0	0.004656	0	0
SQLE	6713	broad.mit.edu	37	8	126017848	126017848	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:126017848C>T	uc011liq.1	+	3	1552	c.626C>T	c.(625-627)CCT>CTT	p.P209L		NM_003129	NP_003120	Q14534	ERG1_HUMAN	squalene epoxidase	209					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome	flavin adenine dinucleotide binding|squalene monooxygenase activity			ovary(1)|breast(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)		Butenafine(DB01091)|Naftifine(DB00735)|Terbinafine(DB00857)	GTTCAGATTCCTTACCCTCTG	0.453													40	76					0	0	0.007835	0	0
KIAA0196	9897	broad.mit.edu	37	8	126044520	126044520	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:126044520C>T	uc003yrt.2	-	27	3627	c.3298G>A	c.(3298-3300)GGC>AGC	p.G1100S	KIAA0196_uc011lir.1_Missense_Mutation_p.G952S|KIAA0196_uc003yru.1_Intron	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	1100					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			ATAAACTGGCCAATCAGCGCC	0.502													36	92					0	0	0.003755	0	0
ADCY8	114	broad.mit.edu	37	8	131880139	131880139	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:131880139G>A	uc003ytd.3	-	9	2419	c.2163C>T	c.(2161-2163)ATC>ATT	p.I721I	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	721	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			ATAGAAGAACGATAAATGCAC	0.348										HNSCC(32;0.087)			20	43					0	0	0.002299	0	0
EFR3A	23167	broad.mit.edu	37	8	132991232	132991232	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:132991232C>T	uc003yte.2	+	13	1666	c.1465C>T	c.(1465-1467)CGT>TGT	p.R489C		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	489						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			TCTCATGGATCGTCATGACAA	0.393													43	108					0	0	0.003214	0	0
KHDRBS3	10656	broad.mit.edu	37	8	136569778	136569778	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:136569778C>T	uc003yuv.2	+	5	953	c.559C>T	c.(559-561)CGA>TGA	p.R187*	KHDRBS3_uc003yuw.2_Nonsense_Mutation_p.R187*	NM_006558	NP_006549	O75525	KHDR3_HUMAN	KH domain containing, RNA binding, signal	187					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	SH3 domain binding			ovary(2)	2	all_epithelial(106;2.85e-16)|all_neural(2;2.72e-06)|Lung NSC(106;3.95e-06)|all_lung(105;1.11e-05)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.247)			TCCAGTGGTTCGAGGGAAACC	0.428													32	61					0	0	0.003271	0	0
KCNK9	51305	broad.mit.edu	37	8	140630620	140630620	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:140630620C>T	uc003yvf.1	-	2	1070	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K	KCNK9_uc003yvg.1_Missense_Mutation_p.E336K|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	336	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			GGTGAGATCTCCTCGATCTTG	0.552													44	67					0	0	0.003214	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141461084	141461084	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:141461084G>A	uc003yvj.2	-	2	523	c.389C>T	c.(388-390)ACC>ATC	p.T130I	TRAPPC9_uc003yvh.2_Missense_Mutation_p.T228I|TRAPPC9_uc003yvi.1_Missense_Mutation_p.T130I	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	130					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						AGCCACGTCGGTGCGCGGCTG	0.577													12	30					0	0	0.001855	0	0
DENND3	22898	broad.mit.edu	37	8	142204213	142204213	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:142204213G>A	uc003yvy.2	+	23	3756	c.3478G>A	c.(3478-3480)GAG>AAG	p.E1160K	DENND3_uc010mep.2_Missense_Mutation_p.E1121K|DENND3_uc003ywa.1_3'UTR|DENND3_uc003ywb.2_Missense_Mutation_p.E210K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1160										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GAAGACCGTGGAGAAGGAGCT	0.637													29	75					0	0	0.007291	0	0
SLC45A4	57210	broad.mit.edu	37	8	142231803	142231803	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:142231803G>A	uc003ywd.1	-	2	458	c.150C>T	c.(148-150)TTC>TTT	p.F50F	SLC45A4_uc003ywc.1_Silent_p.F50F|SLC45A4_uc010meq.1_Silent_p.F48F	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	101	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TGAGAGGTGTGAAGATGAGGC	0.652													33	54					0	0	0.004878	0	0
GPR20	2843	broad.mit.edu	37	8	142367016	142367016	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:142367016G>A	uc003ywf.2	-	2	1097	c.1008C>T	c.(1006-1008)GGC>GGT	p.G336G		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	336	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			TGTGATGACGGCCTGAGCCCT	0.677													18	29					0	0	0.007413	0	0
TSNARE1	203062	broad.mit.edu	37	8	143425434	143425434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:143425434G>A	uc003ywk.2	-	4	756	c.638C>T	c.(637-639)TCC>TTC	p.S213F	TSNARE1_uc011lju.1_Missense_Mutation_p.S213F|TSNARE1_uc003ywj.2_Missense_Mutation_p.S213F|TSNARE1_uc003ywl.3_Intron	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	213					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					GGGCTTGCCGGAACCAGGGCT	0.697													11	30					0	0	0.001368	0	0
ZNF707	286075	broad.mit.edu	37	8	144773287	144773287	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:144773287G>A	uc003yze.3	+	5	375	c.60G>A	c.(58-60)GAG>GAA	p.E20E	ZNF707_uc010mfh.2_Silent_p.E20E|ZNF707_uc010mfi.2_Silent_p.E20E|ZNF707_uc003yzf.3_Silent_p.E20E|ZNF707_uc003yzh.3_5'UTR|ZNF707_uc011lkq.1_Intron	NM_173831	NP_776192	Q96C28	ZN707_HUMAN	zinc finger protein 707	20	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(1)	1	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;5.6e-41)|Epithelial(56;1.02e-39)|all cancers(56;9.65e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			TCTCAAGGGAGGAGTGGGCGT	0.607													4	28					0	0	0.009096	0	0
EPPK1	83481	broad.mit.edu	37	8	144942583	144942583	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:144942583G>A	uc003zaa.1	-	1	4852	c.4839C>T	c.(4837-4839)TTC>TTT	p.F1613F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1613	Plectin 27.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGTCGATGATGAAGCCGGTAG	0.627													10	46					0	0	0.006214	0	0
PLEC	5339	broad.mit.edu	37	8	144994643	144994643	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:144994643G>A	uc003zaf.1	-	32	9927	c.9757C>T	c.(9757-9759)CTG>TTG	p.L3253L	PLEC_uc003zab.1_Silent_p.L3116L|PLEC_uc003zac.1_Silent_p.L3120L|PLEC_uc003zad.2_Silent_p.L3116L|PLEC_uc003zae.1_Silent_p.L3084L|PLEC_uc003zag.1_Silent_p.L3094L|PLEC_uc003zah.2_Silent_p.L3102L|PLEC_uc003zaj.2_Silent_p.L3143L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3253	Plectin 9.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCCTGGAACAGGGAGACGCTC	0.657													14	22					0	0	0.004007	0	0
PLEC	5339	broad.mit.edu	37	8	144996939	144996939	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:144996939C>T	uc003zaf.1	-	31	7739	c.7569G>A	c.(7567-7569)AAG>AAA	p.K2523K	PLEC_uc003zab.1_Silent_p.K2386K|PLEC_uc003zac.1_Silent_p.K2390K|PLEC_uc003zad.2_Silent_p.K2386K|PLEC_uc003zae.1_Silent_p.K2354K|PLEC_uc003zag.1_Silent_p.K2364K|PLEC_uc003zah.2_Silent_p.K2372K|PLEC_uc003zaj.2_Silent_p.K2413K	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2523	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCACACGCAGCTTGAGGCGCT	0.706													3	13					0	0	0.004672	0	0
KIFC2	90990	broad.mit.edu	37	8	145697783	145697783	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:145697783G>A	uc003zcz.2	+	15	1712	c.1647G>A	c.(1645-1647)GTG>GTA	p.V549V	KIFC2_uc003zda.2_5'Flank	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	549	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GCCTGGCCGTGAGGCAGGGCC	0.657													11	29					0	0	0.001368	0	0
ZNF251	90987	broad.mit.edu	37	8	145948186	145948186	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr8:145948186G>A	uc003zdv.3	-	5	1115	c.859C>T	c.(859-861)CAC>TAC	p.H287Y		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	287	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TCTCCAGTGTGAATTCTCCGA	0.433													15	41					0	0	0.004007	0	0
DOCK8	81704	broad.mit.edu	37	9	340236	340236	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:340236C>T	uc003zgf.2	+	14	1706	c.1594C>T	c.(1594-1596)CCC>TCC	p.P532S	DOCK8_uc011lls.1_Missense_Mutation_p.P532S|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.P464S|DOCK8_uc003zgg.2_Missense_Mutation_p.P464S|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	532	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		GCCCGTGAAACCCTTTCCTGA	0.453													33	34					0	0	0.004878	0	0
RCL1	10171	broad.mit.edu	37	9	4826969	4826969	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:4826969C>T	uc003zis.2	+	3	578	c.320C>T	c.(319-321)CCA>CTA	p.P107L	RCL1_uc003zit.2_Intron|RCL1_uc010mhk.1_Intron	NM_005772	NP_005763	Q9Y2P8	RCL1_HUMAN	RNA terminal phosphate cyclase-like 1	107					ribosome biogenesis|RNA processing	nucleolus	RNA-3'-phosphate cyclase activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0206)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0244)		TGCTTGGCTCCATTTATGAAG	0.458													42	220					0	0	0.007835	0	0
PDCD1LG2	80380	broad.mit.edu	37	9	5534921	5534921	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:5534921G>A	uc003zjg.3	+	3	505	c.232G>A	c.(232-234)GAG>AAG	p.E78K	C9orf46_uc003zjd.2_Intron|PDCD1LG2_uc011lmc.1_Missense_Mutation_p.E78K|PDCD1LG2_uc011lmd.1_Missense_Mutation_p.E78K|PDCD1LG2_uc010mhp.1_Missense_Mutation_p.E78K|PDCD1LG2_uc010mho.1_Missense_Mutation_p.E78K	NM_025239	NP_079515	Q9BQ51	PD1L2_HUMAN	programmed cell death 1 ligand 2 precursor	78	Ig-like V-type.|Extracellular (Potential).				immune response|T cell costimulation	endomembrane system|extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000767)|Lung(218;0.112)		TTTGCTGGAGGAGCAGCTGCC	0.512													118	28					0	0	0.003610	0	0
RANBP6	26953	broad.mit.edu	37	9	6013204	6013204	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:6013204C>G	uc003zjr.2	-	1	2415	c.2404G>C	c.(2404-2406)GGA>CGA	p.G802R	RANBP6_uc011lmf.1_Missense_Mutation_p.G450R|RANBP6_uc003zjs.2_Missense_Mutation_p.G390R	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	802					protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		AGTATTCCTCCCAGTTCTTCC	0.383													3	89					0	0	0.009096	0	0
UHRF2	115426	broad.mit.edu	37	9	6460786	6460786	+	Silent	SNP	C	T	T	rs142780701		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:6460786C>T	uc003zjy.2	+	4	1198	c.858C>T	c.(856-858)TTC>TTT	p.F286F	UHRF2_uc003zjz.2_RNA|UHRF2_uc003zka.1_Silent_p.F63F	NM_152896	NP_690856	Q96PU4	UHRF2_HUMAN	ubiquitin-like with PHD and ring finger domains	286	Interaction with PCNP.				cell cycle|cell differentiation|cell proliferation|protein autoubiquitination|regulation of cell cycle|ubiquitin-dependent protein catabolic process	nucleus	DNA binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0392)|Lung(218;0.129)		TGAAAATTTTCCTGGGGTAAG	0.353													13	20					0	0	0.001368	0	0
PTPRD	5789	broad.mit.edu	37	9	8486155	8486155	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:8486155C>T	uc003zkk.2	-	27	3373	c.2662G>A	c.(2662-2664)GGA>AGA	p.G888R	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.G879R|PTPRD_uc003zkm.2_Missense_Mutation_p.G875R|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	888	Fibronectin type-III 6.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TATGATGCTCCCTTGTGGATG	0.463										TSP Lung(15;0.13)			25	17					0	0	0.003954	0	0
PTPRD	5789	broad.mit.edu	37	9	8633401	8633401	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:8633401G>A	uc003zkk.2	-	13	979	c.268C>T	c.(268-270)CCG>TCG	p.P90S	PTPRD_uc003zkp.2_Missense_Mutation_p.P90S|PTPRD_uc003zkq.2_Missense_Mutation_p.P90S|PTPRD_uc003zkr.2_Missense_Mutation_p.P90S|PTPRD_uc003zks.2_Missense_Mutation_p.P90S|PTPRD_uc003zkl.2_Missense_Mutation_p.P90S|PTPRD_uc003zkm.2_Missense_Mutation_p.P90S|PTPRD_uc003zkn.2_Missense_Mutation_p.P90S|PTPRD_uc003zko.2_Missense_Mutation_p.P90S|PTPRD_uc003zkt.1_Missense_Mutation_p.P90S	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	90	Ig-like C2-type 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCATCCCTCGGAGTCCGTAAG	0.438										TSP Lung(15;0.13)			27	28					0	0	0.006320	0	0
BNC2	54796	broad.mit.edu	37	9	16552546	16552546	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:16552546G>A	uc003zml.2	-	5	791	c.651C>T	c.(649-651)GTC>GTT	p.V217V	BNC2_uc011lmw.1_Silent_p.V122V|BNC2_uc003zmm.2_Silent_p.V175V|BNC2_uc003zmq.1_Silent_p.V231V|BNC2_uc003zmr.1_Silent_p.V254V|BNC2_uc003zmp.1_Silent_p.V245V|BNC2_uc010mij.1_Silent_p.V139V|BNC2_uc011lmv.1_Silent_p.V43V|BNC2_uc003zmo.1_Silent_p.V139V	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	217					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		TGTATCCTCGGACATAGTCCC	0.597													11	10					0	0	0.008291	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18721637	18721637	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:18721637C>T	uc003zne.3	+	15	2107	c.1980C>T	c.(1978-1980)TCC>TCT	p.S660S		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	660	TSP type-1 5.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		TCCTGAAGTCCTGCAATTTGG	0.607													22	27					0	0	0.001882	0	0
FAM154A	158297	broad.mit.edu	37	9	18928172	18928172	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:18928172C>T	uc003zni.1	-	4	1581	c.1303G>A	c.(1303-1305)GTG>ATG	p.V435M	FAM154A_uc010mip.1_Missense_Mutation_p.V243M	NM_153707	NP_714918	Q8IYX7	F154A_HUMAN	hypothetical protein LOC158297	435										pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.53e-16)		AAAGCATCCACTTCCTCAAAG	0.507													22	34					0	0	0.002780	0	0
KIAA1797	54914	broad.mit.edu	37	9	20862683	20862683	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:20862683C>T	uc003zog.1	+	18	2390	c.2027C>T	c.(2026-2028)TCC>TTC	p.S676F	KIAA1797_uc003zoh.1_Missense_Mutation_p.S112F	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	676						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CTAGTTCCTTCCTTAACGGTC	0.413													26	46					0	0	0.003330	0	0
LINGO2	158038	broad.mit.edu	37	9	27950040	27950040	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:27950040A>T	uc003zqu.1	-	2	824	c.630T>A	c.(628-630)CAT>CAA	p.H210Q	LINGO2_uc010mjf.1_Missense_Mutation_p.H210Q|LINGO2_uc003zqv.1_Missense_Mutation_p.H210Q	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	210	LRR 7.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		TGATATTGAGATGCTTCAGAT	0.468													22	32					0	0	0.010504	0	0
TAF1L	138474	broad.mit.edu	37	9	32630810	32630810	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:32630810C>T	uc003zrg.1	-	1	4858	c.4768G>A	c.(4768-4770)GAT>AAT	p.D1590N	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1590	Bromo 2.				male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGGTTTACATCATCTAGAAAA	0.388													17	35					0	0	0.006122	0	0
TMEM215	401498	broad.mit.edu	37	9	32784392	32784392	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:32784392G>A	uc003zri.3	+	2	576	c.211G>A	c.(211-213)GAG>AAG	p.E71K		NM_212558	NP_997723	Q68D42	TM215_HUMAN	transmembrane protein 215	71						integral to membrane					0						CAAGTGGCCAGAGAACGAGCT	0.607													21	27					0	0	0.010504	0	0
SPAG8	26206	broad.mit.edu	37	9	35811980	35811981	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:35811980_35811981GG>AA	uc003zye.2	-	2	177_178	c.62_63CC>TT	c.(61-63)CCC>CTT	p.P21L	SPAG8_uc003zyf.2_5'UTR|SPAG8_uc003zyg.2_Missense_Mutation_p.P21L	NM_172312	NP_758516	Q99932	SPAG8_HUMAN	sperm associated antigen 8 isoform 2	21						acrosomal vesicle|membrane				ovary(1)	1	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			CTTCGGAGCTGGGCTGTATGTC	0.465													21	27					0	0	0.004672	0	0
ZCCHC7	84186	broad.mit.edu	37	9	37126554	37126554	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:37126554C>T	uc003zzq.2	+	2	398	c.225C>T	c.(223-225)ATC>ATT	p.I75I	ZCCHC7_uc011lqh.1_Intron|ZCCHC7_uc011lqi.1_Silent_p.I74I|ZCCHC7_uc010mlt.2_Silent_p.I74I|ZCCHC7_uc003zzs.1_Silent_p.I74I	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	75							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		AGAAGCTAATCGTCCTTTCAG	0.408													55	62					0	0	0.003610	0	0
ALDH1B1	219	broad.mit.edu	37	9	38396887	38396887	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:38396887G>A	uc004aay.2	+	2	1254	c.1142G>A	c.(1141-1143)GGC>GAC	p.G381D		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	381					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	CAGAAGGAGGGCGCAAAACTC	0.567													22	24					0	0	0.003330	0	0
ANKRD20A4	728747	broad.mit.edu	37	9	69420379	69420379	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:69420379A>T	uc004afn.2	+	13	1381	c.1269A>T	c.(1267-1269)AAA>AAT	p.K423N		NM_001098805	NP_001092275	Q4UJ75	A20A4_HUMAN	ankyrin repeat domain 20 family, member A4	423											0						AGATTGGGAAAACGTATCCTC	0.343													8	166					0	0	0.000978	0	0
C9orf135	138255	broad.mit.edu	37	9	72520888	72520888	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:72520888G>A	uc004ahl.2	+	6	591	c.526G>A	c.(526-528)GAT>AAT	p.D176N	C9orf135_uc011lrw.1_Missense_Mutation_p.M112I|C9orf135_uc010moq.2_Missense_Mutation_p.D68N|C9orf135_uc011lrx.1_RNA|C9orf135_uc010mop.2_Missense_Mutation_p.M156I	NM_001010940	NP_001010940	Q5VTT2	CI135_HUMAN	hypothetical protein LOC138255	176	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CTGTCAAGATGATTATTCCAT	0.328													26	18					0	0	0.008361	0	0
TRPM3	80036	broad.mit.edu	37	9	73477938	73477938	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:73477938G>A	uc004aid.2	-	3	592	c.348C>T	c.(346-348)TCC>TCT	p.S116S	TRPM3_uc004ahw.2_5'UTR|TRPM3_uc004ahx.2_5'UTR|TRPM3_uc004ahy.2_5'UTR|TRPM3_uc004ahz.2_5'UTR|TRPM3_uc004aia.2_5'UTR|TRPM3_uc004aib.2_5'UTR|TRPM3_uc004aic.2_Silent_p.S116S|TRPM3_uc010mor.2_Silent_p.S116S|TRPM3_uc004aie.2_5'UTR|TRPM3_uc004aif.2_5'UTR|TRPM3_uc004aig.2_5'UTR|TRPM3_uc004aii.2_Silent_p.S118S	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	116	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						TGTCATTTCGGGAGAGGCGAC	0.502													36	46					0	0	0.004289	0	0
PRUNE2	158471	broad.mit.edu	37	9	79318512	79318512	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:79318512G>A	uc010mpk.2	-	9	8141	c.8017C>T	c.(8017-8019)CAG>TAG	p.Q2673*	PRUNE2_uc004akj.3_Nonsense_Mutation_p.Q126*|PRUNE2_uc010mpl.1_Nonsense_Mutation_p.Q126*	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2673					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ATCTGCAGCTGGGGACCCTCA	0.557													12	17					0	0	0.001368	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323726	79323726	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:79323726C>T	uc010mpk.2	-	8	3588	c.3464G>A	c.(3463-3465)GGA>GAA	p.G1155E		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1155					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AGCCATGTATCCTTCTGTTTG	0.517													37	50					0	0	0.003755	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324223	79324223	+	Silent	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:79324223T>C	uc010mpk.2	-	8	3091	c.2967A>G	c.(2965-2967)CCA>CCG	p.P989P		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	989					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTTTAGCAAATGGCTTGTGTT	0.448													23	24					0	0	0.001882	0	0
RASEF	158158	broad.mit.edu	37	9	85677407	85677407	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:85677407G>C	uc004amo.1	-	1	637	c.376C>G	c.(376-378)CGG>GGG	p.R126G	RASEF_uc004amp.1_Missense_Mutation_p.R126G	NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	126					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						TGCCAAGCCCGGCCGGGACTC	0.697													9	8					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	9	90747548	90747548	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:90747548C>T	uc011lti.1	-	4	433	c.404G>A	c.(403-405)AGA>AAA	p.R135K						SubName: Full=cDNA FLJ59639;																		ATCAGGTGTTCTTTTGCCCAC	0.592													28	36					0	0	0.002096	0	0
C9orf47	286223	broad.mit.edu	37	9	91606093	91606093	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:91606093G>A	uc004aqd.2	+	1	316	c.183G>A	c.(181-183)GAG>GAA	p.E61E	S1PR3_uc004aqe.2_5'Flank|C9orf47_uc004aqc.1_Silent_p.E61E	NM_001001938	NP_001001938	Q6ZRZ4	CI047_HUMAN	hypothetical protein LOC286223 isoform 1	61						extracellular region					0						CGCCCGATGAGGACAAGGTCT	0.602													3	6					0	0	0.009096	0	0
SHC3	53358	broad.mit.edu	37	9	91667023	91667023	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:91667023G>A	uc004aqg.2	-	7	1198	c.891C>T	c.(889-891)ATC>ATT	p.I297I		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	297	PID.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						AGGCTTGTCCGATGGAGCCGA	0.498													25	25					0	0	0.003954	0	0
ZNF782	158431	broad.mit.edu	37	9	99581465	99581465	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:99581465G>A	uc004awp.1	-	6	1121	c.840C>T	c.(838-840)TTC>TTT	p.F280F	ZNF782_uc011lup.1_Silent_p.F148F	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	280	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				TGATTCTACAGAAACAATTTC	0.358													24	33					0	0	0.003954	0	0
ERP44	23071	broad.mit.edu	37	9	102744907	102744907	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:102744907C>T	uc004bam.2	-	12	1416	c.1208G>A	c.(1207-1209)CGA>CAA	p.R403Q	ERP44_uc010msy.2_RNA|ERP44_uc010msz.2_3'UTR	NM_015051	NP_055866	Q9BS26	ERP44_HUMAN	thioredoxin domain containing 4 (endoplasmic	403	Prevents secretion from ER (Potential).				cell redox homeostasis|glycoprotein metabolic process|protein folding|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|ER-Golgi intermediate compartment	protein binding|protein disulfide isomerase activity				0						AAGCTCATCTCGATCCCTCAA	0.393													12	18					0	0	0.001368	0	0
OR13D1	286365	broad.mit.edu	37	9	107457290	107457290	+	Missense_Mutation	SNP	G	A	A	rs149708960		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:107457290G>A	uc011lvs.1	+	1	588	c.588G>A	c.(586-588)ATG>ATA	p.M196I		NM_001004484	NP_001004484	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTCTGACAATGATGTTGCCTT	0.418													39	47					0	0	0.006999	0	0
SVEP1	79987	broad.mit.edu	37	9	113173591	113173591	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:113173591G>C	uc010mtz.2	-	37	6737	c.6400C>G	c.(6400-6402)CCT>GCT	p.P2134A	SVEP1_uc010mty.2_Missense_Mutation_p.P60A	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2134	Sushi 12.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ATGGGGGAAGGGTTCCACTGC	0.483													13	23					0	0	0.001855	0	0
MUSK	4593	broad.mit.edu	37	9	113562887	113562887	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:113562887C>G	uc004bey.2	+	14	2327	c.2229C>G	c.(2227-2229)GAC>GAG	p.D743E	MUSK_uc004bez.1_Missense_Mutation_p.D323E	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	743	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						AAATTGCCGACTTTGGCCTCT	0.483													55	77					0	0	0.003610	0	0
KIAA0368	23392	broad.mit.edu	37	9	114151901	114151901	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:114151901G>A	uc004bfe.1	-	32	3916	c.3916C>T	c.(3916-3918)CCC>TCC	p.P1306S		NM_001080398	NP_001073867			KIAA0368 protein												0						CCAAGGTTGGGATCAAACTGG	0.463													18	20					0	0	0.006122	0	0
C9orf84	158401	broad.mit.edu	37	9	114462261	114462261	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:114462261C>T	uc004bfr.2	-	22	3099	c.2964G>A	c.(2962-2964)GGG>GGA	p.G988G	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Silent_p.G949G|C9orf84_uc010mug.2_Silent_p.G899G	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	988										ovary(2)	2						CAGAGTTTAGCCCAAATGAAA	0.308													27	53					0	0	0.009535	0	0
TNC	3371	broad.mit.edu	37	9	117849554	117849554	+	Splice_Site	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:117849554T>C	uc004bjj.3	-	3	820	c.458_splice	c.e3-1	p.G153_splice	TNC_uc010mvf.2_Splice_Site_p.G153_splice	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor						cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CCAAGCGGCCTGCAACAAAAG	0.542													12	13					0	0	0.001368	0	0
PAPPA	5069	broad.mit.edu	37	9	118997908	118997908	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:118997908C>T	uc004bjn.2	+	7	3105	c.2724C>T	c.(2722-2724)TTC>TTT	p.F908F	PAPPA_uc011lxp.1_Silent_p.F603F|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	908					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ATAGGAAATTCGTAGACATGT	0.517													26	52					0	0	0.008361	0	0
DBC1	1620	broad.mit.edu	37	9	121971022	121971022	+	Missense_Mutation	SNP	G	A	A	rs112160006		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:121971022G>A	uc004bkc.2	-	7	1576	c.1120C>T	c.(1120-1122)CCC>TCC	p.P374S		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	374					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TGGTGGTTGGGATTGTGGCGA	0.562													13	17					0	0	0.004007	0	0
DAB2IP	153090	broad.mit.edu	37	9	124441046	124441046	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:124441046C>T	uc004bln.2	+	2	199	c.130C>T	c.(130-132)CCG>TCG	p.P44S		NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	72					activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						GGCCGCCACGCCGTTCCGGGT	0.567													3	3					0	0	0.000602	0	0
MRRF	92399	broad.mit.edu	37	9	125084878	125084878	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:125084878C>T	uc004bmb.2	+	7	886	c.771C>T	c.(769-771)ACC>ACT	p.T257T	MRRF_uc004bmc.2_3'UTR|MRRF_uc010mwa.2_Silent_p.T257T|MRRF_uc011lyr.1_Silent_p.T205T|MRRF_uc004bmd.2_Silent_p.T257T|MRRF_uc004bme.2_RNA	NM_138777	NP_620132	Q96E11	RRFM_HUMAN	mitochondrial ribosome recycling factor isoform	257					ribosome disassembly|translation	mitochondrion	sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						CAGTGAAGACCAAAGAACTCC	0.532													13	18					0	0	0.004990	0	0
PTGS1	5742	broad.mit.edu	37	9	125144005	125144005	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:125144005G>A	uc004bmg.1	+	7	876	c.741G>A	c.(739-741)AAG>AAA	p.K247K	PTGS1_uc011lys.1_Silent_p.K222K|PTGS1_uc010mwb.1_Silent_p.K138K|PTGS1_uc004bmf.1_Silent_p.K247K|PTGS1_uc004bmh.1_Silent_p.K138K|PTGS1_uc011lyt.1_Silent_p.K138K	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	247					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GGCTCTTTAAGGATGGGAAAC	0.587													19	17					0	0	0.003954	0	0
OR1J1	347168	broad.mit.edu	37	9	125239481	125239481	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:125239481C>T	uc011lyu.1	-	1	725	c.725G>A	c.(724-726)GGA>GAA	p.G242E	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GAGGTGGGATCCACAAGTGGA	0.458													29	17					0	0	0.007291	0	0
OR1J2	26740	broad.mit.edu	37	9	125273643	125273643	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:125273643C>T	uc004bmj.1	+	4	1418	c.563C>T	c.(562-564)TCC>TTC	p.S188F	OR1J2_uc011lyv.1_Missense_Mutation_p.S188F	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						CTCAAGCTGTCCTGCTCAGAT	0.522													29	39					0	0	0.006320	0	0
RABGAP1	23637	broad.mit.edu	37	9	125852081	125852081	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:125852081C>T	uc011lzh.1	+	20	2603	c.2469C>T	c.(2467-2469)ACC>ACT	p.T823T	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc011lzj.1_Silent_p.T162T	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	823	Potential.				cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						AATATCACACCATGAGGGAAC	0.413													3	3					0	0	0.000602	0	0
SH2D3C	10044	broad.mit.edu	37	9	130513528	130513528	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:130513528C>T	uc004bsc.2	-	4	749	c.607G>A	c.(607-609)GAA>AAA	p.E203K	SH2D3C_uc010mxo.2_Missense_Mutation_p.E43K|SH2D3C_uc004bry.2_Missense_Mutation_p.E45K|SH2D3C_uc004brz.3_5'UTR|SH2D3C_uc011mak.1_5'UTR|SH2D3C_uc004bsa.2_Missense_Mutation_p.E46K|SH2D3C_uc004bsb.2_Missense_Mutation_p.E135K	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	203					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TCCTCCAATTCCTTGTGGAGT	0.542													32	46					0	0	0.009535	0	0
SETX	23064	broad.mit.edu	37	9	135156886	135156886	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:135156886G>A	uc004cbk.2	-	20	6805	c.6622C>T	c.(6622-6624)CCT>TCT	p.P2208S	SETX_uc004cbj.2_Missense_Mutation_p.P1827S|SETX_uc010mzt.2_Missense_Mutation_p.P1827S	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	2208					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		AGCTGCTTAGGATCTCCTACT	0.418													33	33					0	0	0.004289	0	0
CLCN4	1183	broad.mit.edu	37	X	10176261	10176261	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:10176261C>T	uc004csy.3	+	9	1450	c.1020C>T	c.(1018-1020)GTC>GTT	p.V340V	CLCN4_uc011mid.1_Silent_p.V246V	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	340	Helical; (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TGCTTGGGGTCTTCGGGGGCT	0.577													62	39					0	0	0.003610	0	0
FRMPD4	9758	broad.mit.edu	37	X	12516910	12516910	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:12516910C>T	uc004cuz.1	+	2	659	c.153C>T	c.(151-153)TTC>TTT	p.F51F	FRMPD4_uc011mij.1_Silent_p.F43F	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	51	WW.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GAGACTACTTCATCAAGTAGG	0.488													22	11					0	0	0.003954	0	0
TLR7	51284	broad.mit.edu	37	X	12904432	12904432	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:12904432C>T	uc004cvc.2	+	3	944	c.805C>T	c.(805-807)CCT>TCT	p.P269S		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	269	Extracellular (Potential).|LRR 9.				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	TGCCCCATTTCCTTGTGCGCC	0.373													27	19					0	0	0.005443	0	0
FANCB	2187	broad.mit.edu	37	X	14868791	14868791	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:14868791T>A	uc004cwg.1	-	7	1600	c.1332A>T	c.(1330-1332)GAA>GAT	p.E444D	FANCB_uc004cwh.1_Missense_Mutation_p.E444D	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	444					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					GAACAAGACATTCCTTCTAAA	0.308								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				4	3					0	0	0.000602	0	0
PHKA2	5256	broad.mit.edu	37	X	18923922	18923922	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:18923922G>A	uc004cyv.3	-	26	3292	c.2862C>T	c.(2860-2862)CTC>CTT	p.L954L	PHKA2_uc004cyu.3_Silent_p.L252L|PHKA2_uc010nfe.1_Silent_p.L4L|PHKA2_uc010nff.1_RNA	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	954			NL -> I (in GSD9A; type 1).		glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					TATGGTGCAGGAGATTTTTCA	0.443													62	39					0	0	0.003610	0	0
PHEX	5251	broad.mit.edu	37	X	22117197	22117197	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:22117197C>T	uc004dah.2	+	9	1210	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	PHEX_uc011mjr.1_Missense_Mutation_p.S336F|PHEX_uc011mjs.1_Missense_Mutation_p.S239F	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	336	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						ATCAGCCCCTCCGAGAATGTG	0.453													49	31					0	0	0.003610	0	0
POLA1	5422	broad.mit.edu	37	X	24759606	24759606	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:24759606C>T	uc004dbl.2	+	21	2336	c.2313C>T	c.(2311-2313)ATC>ATT	p.I771I	SCARNA23_uc004dbo.1_5'Flank	NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	771					cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	TCACTAACATCGCTGGGAACA	0.383													20	15					0	0	0.008871	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157478	26157478	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:26157478G>A	uc004dbq.1	+	2	563	c.376G>A	c.(376-378)GAG>AAG	p.E126K		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	126	MAGE.						protein binding			central_nervous_system(1)	1						TGAAACGAAAGAGCCAATTAC	0.433													5	3					0	0	0.000602	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157523	26157523	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:26157523G>T	uc004dbq.1	+	2	608	c.421G>T	c.(421-423)GAT>TAT	p.D141Y		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	141	MAGE.						protein binding			central_nervous_system(1)	1						TATCAGGAAGGATAAGTGTCA	0.423													3	2					0.004672	0.00516138	0.004672	1	0
MAGEB2	4113	broad.mit.edu	37	X	30237111	30237111	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:30237111G>A	uc004dbz.2	+	2	517	c.414G>A	c.(412-414)CTG>CTA	p.L138L		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	138	MAGE.						protein binding			ovary(1)	1						GAGAAATGCTGAAAATTGTTG	0.458													6	6					0	0	0.001168	0	0
FAM47A	158724	broad.mit.edu	37	X	34150261	34150261	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:34150261G>A	uc004ddg.2	-	1	168	c.135C>T	c.(133-135)ACC>ACT	p.T45T		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	45										ovary(4)|central_nervous_system(1)	5						CCCAGTTCTGGGTGTCCATGG	0.577													29	23					0	0	0.007291	0	0
CXorf59	286464	broad.mit.edu	37	X	36162702	36162702	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:36162702G>A	uc004ddk.1	+	11	1471	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	429						integral to membrane				central_nervous_system(1)	1						gtttccaaaggagatggatgc	0													14	14					0	0	0.003163	0	0
ATP6AP2	10159	broad.mit.edu	37	X	40456558	40456558	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:40456558G>A	uc004det.2	+	4	460	c.358G>A	c.(358-360)GAA>AAA	p.E120K	ATP6AP2_uc010nhc.2_RNA|ATP6AP2_uc011mkl.1_Missense_Mutation_p.E44K|ATP6AP2_uc011mkm.1_Intron|ATP6AP2_uc011mkn.1_Intron|ATP6AP2_uc004deu.1_5'Flank	NM_005765	NP_005756	O75787	RENR_HUMAN	ATPase, H+ transporting, lysosomal accessory	120	Extracellular (Potential).				angiotensin maturation|positive regulation of transforming growth factor-beta1 production|regulation of MAPKKK cascade	external side of plasma membrane|integral to membrane	protein binding|receptor activity				0						ATTTTCTGAGGAAACTCCTGT	0.313													24	13					0	0	0.006320	0	0
DDX3X	1654	broad.mit.edu	37	X	41205845	41205845	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:41205845A>C	uc004dfe.2	+	14	2440	c.1585A>C	c.(1585-1587)ATT>CTT	p.I529L	DDX3X_uc004dff.2_Missense_Mutation_p.I529L|DDX3X_uc011mkq.1_Missense_Mutation_p.I513L|DDX3X_uc011mkr.1_Intron|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	529	Helicase C-terminal.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						TGTACATCGTATTGGTCGTAC	0.378										HNSCC(61;0.18)			46	30					0	0	0.003610	0	0
ZNF157	7712	broad.mit.edu	37	X	47272784	47272784	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:47272784G>A	uc004dhr.1	+	4	1381	c.1312G>A	c.(1312-1314)GGA>AGA	p.G438R		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	438					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AACTCACACAGGAGAGAAACC	0.428													13	2					0	0	0.001855	0	0
ZNF81	347344	broad.mit.edu	37	X	47775930	47775930	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:47775930C>T	uc010nhy.1	+	6	2253	c.1885C>T	c.(1885-1887)CAG>TAG	p.Q629*		NM_007137	NP_009068	P51508	ZNF81_HUMAN	zinc finger protein 81	629	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(315;0.0973)				CAATAAACATCAGACAATTCA	0.393													10	5					0	0	0.000978	0	0
SSX6	280657	broad.mit.edu	37	X	47969935	47969935	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:47969935C>T	uc004dix.1	+	3	260	c.138C>T	c.(136-138)ATC>ATT	p.I46I	SSX6_uc011mlv.1_Silent_p.I46I	NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						CGGAGAAAATCAGCTGTGTGC	0.408													19	10					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	X	48159148	48159148	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:48159148C>T	uc010nib.1	-	6	472	c.385G>A	c.(385-387)GCA>ACA	p.A129T		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		AAGCCAGATGCTTCTGGCACT	0.443													123	61					0	0	0.003610	0	0
PIM2	11040	broad.mit.edu	37	X	48776077	48776078	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:48776077_48776078GG>AA	uc004dls.2	-	1	336_337	c.34_35CC>TT	c.(34-36)CCC>TTC	p.P12F		NM_006875	NP_006866	Q9P1W9	PIM2_HUMAN	serine/threonine protein kinase pim-2	12					anti-apoptosis|cell proliferation|male meiosis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|response to virus		ATP binding|protein serine/threonine kinase activity			lung(3)|stomach(1)	4						GGTCCCGGGGGGCGCGGGAGGC	0.703													19	11					0	0	0.004672	0	0
FOXR2	139628	broad.mit.edu	37	X	55650949	55650949	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:55650949C>T	uc004duo.2	+	1	1117	c.805C>T	c.(805-807)CTT>TTT	p.L269F		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	269	Fork-head.				embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						TCGCTCTTGCCTTTGGAAGCT	0.517													27	20					0	0	0.005443	0	0
ZXDB	158586	broad.mit.edu	37	X	57619114	57619114	+	Silent	SNP	G	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:57619114G>C	uc004dvd.2	+	1	846	c.633G>C	c.(631-633)CCG>CCC	p.P211P		NM_007157	NP_009088	P98169	ZXDB_HUMAN	zinc finger, X-linked, duplicated B	211					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TGATCGCCCCGCAAGCTGGGT	0.736													2	12					0	0	0.004672	0	0
HEPH	9843	broad.mit.edu	37	X	65476031	65476031	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:65476031C>T	uc011moz.1	+	17	2824	c.2764C>T	c.(2764-2766)CGG>TGG	p.R922W	HEPH_uc004dwn.2_Missense_Mutation_p.R922W|HEPH_uc004dwo.2_Missense_Mutation_p.R652W|HEPH_uc010nkr.2_Missense_Mutation_p.R730W|HEPH_uc011mpa.1_Missense_Mutation_p.R922W|HEPH_uc010nks.2_Missense_Mutation_p.R211W	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	919	Extracellular (Potential).|Plastocyanin-like 6.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TGACATGGATCGGGAATTTGC	0.493													26	20					0	0	0.005443	0	0
RGAG4	340526	broad.mit.edu	37	X	71350719	71350719	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:71350719G>A	uc010nlh.1	-	1	1033	c.672C>T	c.(670-672)ATC>ATT	p.I224I	NHSL2_uc011mqa.1_Intron|RGAG4_uc004eaj.1_RNA|NHSL2_uc004eak.1_5'Flank	NM_001024455	NP_001019626	Q5HYW3	RGAG4_HUMAN	retrotransposon gag domain containing 4	224										ovary(2)|skin(1)	3	Renal(35;0.156)					ATTCCTTACGGATTTCATCCA	0.567													30	20					0	0	0.009535	0	0
XIST	7503	broad.mit.edu	37	X	73066488	73066488	+	RNA	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:73066488C>T	uc004ebm.1	-	1		c.6101G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GTGGGCACTTCCTGCTGGAAG	0.468													24	21					0	0	0.003330	0	0
FGF16	8823	broad.mit.edu	37	X	76711794	76711795	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:76711794_76711795CC>TT	uc011mqp.1	+	2	405_406	c.132_133CC>TT	c.(130-135)TTCCGG>TTTTGG	p.R45W		NM_003868	NP_003859	O43320	FGF16_HUMAN	fibroblast growth factor 16	136					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|metabolic process|organ morphogenesis|response to temperature stimulus	extracellular space	growth factor activity			lung(1)	1						AATGTGTTTTCCGGGAACAGTT	0.426													36	37					0	0	0.004672	0	0
CYSLTR1	10800	broad.mit.edu	37	X	77528607	77528607	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:77528607T>G	uc004edb.2	-	3	1037	c.637A>C	c.(637-639)ATT>CTT	p.I213L	CYSLTR1_uc010nma.2_Missense_Mutation_p.I213L|CYSLTR1_uc010nmb.2_Missense_Mutation_p.I213L	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	213	Helical; Name=5; (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	AAGGTCAAAATGATCATTGTG	0.313													8	7					0	0	0.004482	0	0
LPAR4	2846	broad.mit.edu	37	X	78010978	78010978	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:78010978C>T	uc010nme.2	+	2	1017	c.612C>T	c.(610-612)ATC>ATT	p.I204I		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	204	Helical; Name=5; (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						TATCCAAGATCACAATATTTA	0.408													19	10					0	0	0.008871	0	0
LPAR4	2846	broad.mit.edu	37	X	78011197	78011197	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:78011197C>T	uc010nme.2	+	2	1236	c.831C>T	c.(829-831)TCC>TCT	p.S277S		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	277	Extracellular (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						TGGTGCGCTCCCAAGCTATTA	0.408													14	4					0	0	0.001855	0	0
GPR174	84636	broad.mit.edu	37	X	78427282	78427282	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:78427282G>A	uc004edg.1	+	1	814	c.778G>A	c.(778-780)GAA>AAA	p.E260K		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	260	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						GAAGTCCAATGAAATTAAAAG	0.388										HNSCC(63;0.18)			28	19					0	0	0.008361	0	0
TBX22	50945	broad.mit.edu	37	X	79286410	79286410	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:79286410C>T	uc010nmg.1	+	9	1497	c.1363C>T	c.(1363-1365)CTG>TTG	p.L455L	TBX22_uc004edi.1_Silent_p.L335L|TBX22_uc004edj.1_Silent_p.L455L	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	455					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						AAATATTTTTCTGCCAAACTC	0.383													22	11					0	0	0.002780	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83371240	83371240	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:83371240C>T	uc004eej.1	-	12	1082	c.1005G>A	c.(1003-1005)TGG>TGA	p.W335*	RPS6KA6_uc011mqt.1_Nonsense_Mutation_p.W335*|RPS6KA6_uc011mqu.1_Nonsense_Mutation_p.W232*	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	335	AGC-kinase C-terminal.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						AACTTACATCCCAGTCAATAT	0.239													5	11					0	0	0.001168	0	0
PCDH19	57526	broad.mit.edu	37	X	99551530	99551530	+	Silent	SNP	A	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:99551530A>G	uc010nmz.2	-	6	4868	c.3192T>C	c.(3190-3192)CCT>CCC	p.P1064P	PCDH19_uc004efw.3_Silent_p.P1016P|PCDH19_uc004efx.3_Silent_p.P1017P	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1064	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						GGGAGGTGACAGGGCTAATCG	0.597													11	7					0	0	0.008291	0	0
CENPI	2491	broad.mit.edu	37	X	100402756	100402756	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:100402756C>T	uc004egx.2	+	18	2101	c.1831C>T	c.(1831-1833)CGT>TGT	p.R611C	CENPI_uc011mrg.1_Missense_Mutation_p.R611C	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	611					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						TGTTAGATATCGTAAAAATTT	0.269													17	13					0	0	0.001882	0	0
GPRASP2	114928	broad.mit.edu	37	X	101972234	101972234	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:101972234C>T	uc004ejk.2	+	4	3771	c.2437C>T	c.(2437-2439)CGT>TGT	p.R813C	GPRASP2_uc004ejl.2_Missense_Mutation_p.R813C|GPRASP2_uc004ejm.2_Missense_Mutation_p.R813C|GPRASP2_uc011mrp.1_Missense_Mutation_p.R152C	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	813						cytoplasm	protein binding			ovary(1)	1						TTCTGCATTTCGTGAATTTGA	0.358													63	41					0	0	0.003610	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	103903604	103903604	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:103903604C>T	uc004elz.1	+	2	766	c.10C>T	c.(10-12)CCA>TCA	p.P4S		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	4					central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GATGAAGCCACCATTTCTTTT	0.393													30	21					0	0	0.002445	0	0
NRK	203447	broad.mit.edu	37	X	105150410	105150410	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:105150410C>T	uc004emd.2	+	11	1152	c.849C>T	c.(847-849)TCC>TCT	p.S283S	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	283	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TTTTTAGGTCCCGTAAGTTCC	0.403										HNSCC(51;0.14)			4	2					0	0	0.009096	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450719	105450719	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:105450719G>A	uc004emf.1	+	4	1943	c.1294G>A	c.(1294-1296)GAA>AAA	p.E432K	MUM1L1_uc004emg.1_Missense_Mutation_p.E432K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	432	PWWP.									ovary(2)|pancreas(1)|skin(1)	4						CATGAATTCTGAAAAGAAGGG	0.343													21	10					0	0	0.008871	0	0
COL4A5	1287	broad.mit.edu	37	X	107829883	107829883	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:107829883A>T	uc004enz.1	+	19	1273	c.1071A>T	c.(1069-1071)GAA>GAT	p.E357D	COL4A5_uc011mso.1_Missense_Mutation_p.E357D|COL4A5_uc004eob.1_5'UTR	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	357	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CTATAGGAGAAAAAGGAAACA	0.423									Alport_syndrome_with_Diffuse_Leiomyomatosis				47	33					0	0	0.003610	0	0
COL4A5	1287	broad.mit.edu	37	X	107840636	107840636	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:107840636C>T	uc004enz.1	+	24	1819	c.1617C>T	c.(1615-1617)GGC>GGT	p.G539G	COL4A5_uc011mso.1_Silent_p.G539G|COL4A5_uc004eob.1_Silent_p.G147G	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	539	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GTGCTCCAGGCTTTCCTGGAT	0.388									Alport_syndrome_with_Diffuse_Leiomyomatosis				62	17					0	0	0.003610	0	0
GUCY2F	2986	broad.mit.edu	37	X	108718988	108718988	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:108718988G>A	uc004eod.3	-	2	454	c.178C>T	c.(178-180)CCT>TCT	p.P60S	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	60	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CAAGCCCAAGGGCCCACCACC	0.552											OREG0019905	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	18					0	0	0.003330	0	0
RGAG1	57529	broad.mit.edu	37	X	109694939	109694939	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:109694939C>T	uc004eor.1	+	3	1340	c.1094C>T	c.(1093-1095)CCA>CTA	p.P365L	RGAG1_uc011msr.1_Missense_Mutation_p.P365L	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	365										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CAAACGATGCCAGCCCCAGGC	0.542													106	80					0	0	0.003610	0	0
RGAG1	57529	broad.mit.edu	37	X	109696046	109696046	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:109696046C>T	uc004eor.1	+	3	2447	c.2201C>T	c.(2200-2202)TCG>TTG	p.S734L	RGAG1_uc011msr.1_Missense_Mutation_p.S734L	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	734										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						ATGTCCATGTCGCCCATGAAG	0.527													24	26					0	0	0.005443	0	0
TDGF3	6998	broad.mit.edu	37	X	109764433	109764433	+	RNA	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:109764433G>A	uc004eos.1	+	1		c.894G>A				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						CTTTGAACTGGGATTAGTTGC	0.507													20	6					0	0	0.001882	0	0
PAK3	5063	broad.mit.edu	37	X	110439124	110439124	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:110439124A>C	uc004epa.2	+	12	1237	c.1210A>C	c.(1210-1212)AAG>CAG	p.K404Q	PAK3_uc010npt.1_Missense_Mutation_p.K389Q|PAK3_uc010npu.1_Missense_Mutation_p.K389Q|PAK3_uc004eoy.1_Missense_Mutation_p.K144Q|PAK3_uc004eoz.2_Missense_Mutation_p.K389Q|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.K425Q|PAK3_uc010npw.1_Missense_Mutation_p.K410Q	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	404	Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						TAGAGATATAAAGAGTGACAA	0.343										TSP Lung(19;0.15)			59	30					0	0	0.003610	0	0
TRPC5	7224	broad.mit.edu	37	X	111155953	111155953	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:111155953C>T	uc004epl.1	-	3	1385	c.466G>A	c.(466-468)GAA>AAA	p.E156K	TRPC5_uc004epm.1_Missense_Mutation_p.E156K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	156	Cytoplasmic (Potential).|ANK 4.				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TTGATGATTTCGTAGTTGTTG	0.512													53	18					0	0	0.003610	0	0
AGTR2	186	broad.mit.edu	37	X	115304175	115304175	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:115304175G>A	uc004eqh.3	+	3	849	c.642G>A	c.(640-642)ATG>ATA	p.M214I		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	214	Helical; Name=5; (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						TTGCCTTAATGAAAAATATCC	0.373													30	11					0	0	0.007291	0	0
RPL39	6170	broad.mit.edu	37	X	118923942	118923942	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:118923942G>A	uc004erx.1	-	2	103	c.36C>T	c.(34-36)TTC>TTT	p.F12F	SNORA69_uc004ery.1_5'Flank	NM_001000	NP_000991	P62891	RL39_HUMAN	ribosomal protein L39	12					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0						TCTTGGCCAGGAATCGCTTAA	0.398													4	30					0	0	0.000602	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185837	127185837	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:127185837C>T	uc004eum.2	-	1	546	c.349G>A	c.(349-351)GAA>AAA	p.E117K		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	117						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						TCTCGAATTTCCCTAGGATTC	0.488													105	52					0	0	0.003610	0	0
GPC3	2719	broad.mit.edu	37	X	132826495	132826495	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:132826495G>A	uc004exe.1	-	5	1384	c.1194C>T	c.(1192-1194)TTC>TTT	p.F398F	GPC3_uc004exd.1_Silent_p.F270F|GPC3_uc010nrn.1_Silent_p.F421F|GPC3_uc011mvh.1_Silent_p.F382F|GPC3_uc010nro.1_Silent_p.F344F|GPC3_uc010nrp.1_Silent_p.F270F	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	398						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					AGAAGCTGATGAAAGACTTCA	0.418			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				18	17					0	0	0.001882	0	0
SAGE1	55511	broad.mit.edu	37	X	134990694	134990694	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:134990694G>A	uc004ezh.2	+	12	1526	c.1359G>A	c.(1357-1359)CAG>CAA	p.Q453Q	SAGE1_uc010nry.1_Silent_p.Q422Q|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	453										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AACGAAAACAGGATAACGTCT	0.418													47	21					0	0	0.002522	0	0
SPANXC	64663	broad.mit.edu	37	X	140335800	140335800	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:140335800C>T	uc004fbk.2	-	2	200	c.144G>A	c.(142-144)TCG>TCA	p.S48S	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	48						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					CTAGTATGGTCGAGGACTCAG	0.512													65	58					0	0	0.003610	0	0
AFF2	2334	broad.mit.edu	37	X	148037297	148037297	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:148037297G>A	uc004fcp.2	+	11	2201	c.1722G>A	c.(1720-1722)ACG>ACA	p.T574T	AFF2_uc004fcq.2_Silent_p.T564T|AFF2_uc004fcr.2_Silent_p.T535T|AFF2_uc011mxb.1_Silent_p.T539T|AFF2_uc004fcs.2_Silent_p.T541T|AFF2_uc011mxc.1_Silent_p.T215T	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	574					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AAGTGAAGACGAATGCCAGTC	0.473													93	45					0	0	0.003610	0	0
CNGA2	1260	broad.mit.edu	37	X	150909283	150909283	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:150909283T>C	uc004fey.1	+	5	616	c.392T>C	c.(391-393)TTT>TCT	p.F131S		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	131	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGAACTATTTGTCTTGGAC	0.532													64	37					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900427	151900427	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:151900427C>T	uc010ntp.2	-	3	728	c.374G>A	c.(373-375)CGA>CAA	p.R125Q	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.R125Q|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	125	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCCTGGCTCGATACTTGAG	0.502													39	21					0	0	0.009718	0	0
FLNA	2316	broad.mit.edu	37	X	153577854	153577854	+	Silent	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:153577854G>A	uc004fkk.2	-	47	7881	c.7632C>T	c.(7630-7632)GCC>GCT	p.A2544A	FLNA_uc004fki.2_Silent_p.A584A|FLNA_uc011mzn.1_Silent_p.A677A|FLNA_uc010nuu.1_Silent_p.A2536A	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2544	Self-association site, tail.|Hinge 2.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CATGCTGGGGGGCACAGGTGG	0.652													29	23					0	0	0.008361	0	0
FLNA	2316	broad.mit.edu	37	X	153577876	153577876	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:153577876G>A	uc004fkk.2	-	47	7859	c.7610C>T	c.(7609-7611)TCT>TTT	p.S2537F	FLNA_uc004fki.2_Missense_Mutation_p.S577F|FLNA_uc011mzn.1_Missense_Mutation_p.S670F|FLNA_uc010nuu.1_Missense_Mutation_p.S2529F	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2537	Self-association site, tail.|Hinge 2.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTTGGTCAGAGAGTCTACAAA	0.662													27	29					0	0	0.007291	0	0
MPP1	4354	broad.mit.edu	37	X	154013346	154013346	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:154013346T>G	uc004fmp.1	-	7	879	c.764A>C	c.(763-765)TAT>TCT	p.Y255S	MPP1_uc010nvg.1_Missense_Mutation_p.Y235S|MPP1_uc011mzv.1_Missense_Mutation_p.Y225S|MPP1_uc004fmq.1_Missense_Mutation_p.Y209S|MPP1_uc011mzw.1_Missense_Mutation_p.Y238S|MPP1_uc010nvh.1_Missense_Mutation_p.Y129S	NM_002436	NP_002427	Q00013	EM55_HUMAN	palmitoylated membrane protein 1	255					regulation of neutrophil chemotaxis|signal transduction	integral to plasma membrane|membrane fraction|stereocilium	guanylate kinase activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CTTGGCCAGATATTTGTCTTT	0.522													13	7					0	0	0.001855	0	0
F8	2157	broad.mit.edu	37	X	154132639	154132639	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:154132639C>T	uc004fmt.2	-	17	5918	c.5747G>A	c.(5746-5748)AGA>AAA	p.R1916K	F8_uc010nvi.1_Missense_Mutation_p.R75K	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1916	F5/8 type A 3.|Plastocyanin-like 6.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	CCTGCAGTTTCTTTCCATATT	0.408													95	62					0	0	0.003610	0	0
VAMP7	6845	broad.mit.edu	37	X	155119253	155119253	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:155119253A>T	uc004fnr.2	+	2	298	c.124A>T	c.(124-126)AAA>TAA	p.K42*	VAMP7_uc004fnt.2_Intron|VAMP7_uc011naa.1_Intron|VAMP7_uc011nab.1_5'UTR|VAMP7_uc004fns.2_Nonsense_Mutation_p.K42*|VAMP7_uc011nac.1_5'UTR	NM_005638	NP_005629	P51809	VAMP7_HUMAN	vesicle-associated membrane protein 7 isoform 1	42	Longin.|Cytoplasmic (Potential).				calcium ion-dependent exocytosis|endosome to lysosome transport|eosinophil degranulation|ER to Golgi vesicle-mediated transport|neutrophil degranulation|phagocytosis, engulfment|post-Golgi vesicle-mediated transport|protein transport|vesicle fusion	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|phagocytic vesicle membrane|plasma membrane|SNARE complex|transport vesicle membrane	protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGAAAATAACAAACTAACGTA	0.443													34	52					0	0	0.004289	0	0
VAMP7	6845	broad.mit.edu	37	X	155127842	155127842	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:155127842G>A	uc004fnr.2	+	4	445	c.271G>A	c.(271-273)GGT>AGT	p.G91S	VAMP7_uc004fnt.2_Missense_Mutation_p.G50S|VAMP7_uc011naa.1_Missense_Mutation_p.G52S|VAMP7_uc011nab.1_5'UTR|VAMP7_uc004fns.2_Missense_Mutation_p.G91S|VAMP7_uc011nac.1_Missense_Mutation_p.G24S	NM_005638	NP_005629	P51809	VAMP7_HUMAN	vesicle-associated membrane protein 7 isoform 1	91	Longin.|Cytoplasmic (Potential).				calcium ion-dependent exocytosis|endosome to lysosome transport|eosinophil degranulation|ER to Golgi vesicle-mediated transport|neutrophil degranulation|phagocytosis, engulfment|post-Golgi vesicle-mediated transport|protein transport|vesicle fusion	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|phagocytic vesicle membrane|plasma membrane|SNARE complex|transport vesicle membrane	protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GACTACTTACGGTTCAAGAGC	0.403													66	79					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	X	155252770	155252770	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:155252770G>A	uc004fnw.1	+	6	1473	c.814G>A	c.(814-816)GAC>AAC	p.D272N	uc004fnx.3_Missense_Mutation_p.D58N	NM_182905	NP_878908			WAS protein family homolog 1																		CATTGCCAACGACCTCATGTA	0.607													9	11					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	X	155252868	155252868	+	Silent	SNP	T	A	A			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:155252868T>A	uc004fnw.1	+	6	1571	c.912T>A	c.(910-912)CCT>CCA	p.P304P	uc004fnx.3_Silent_p.P90P	NM_182905	NP_878908			WAS protein family homolog 1																		TAGCCGAGCCTCTCAAGGCAG	0.632													5	8					0	0	0.001984	0	0
TSPY2	64591	broad.mit.edu	37	Y	6115650	6115650	+	Silent	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrY:6115650C>T	uc004fqr.1	+	3	658	c.612C>T	c.(610-612)TTC>TTT	p.F204F	TSPY2_uc004fqs.1_Silent_p.F204F	NM_022573	NP_072095	A6NKD2	TSPY2_HUMAN	testis specific protein, Y-linked 2	204					cell differentiation|gonadal mesoderm development|nucleosome assembly|spermatogenesis	cytoplasm|nucleus					0						TCATGTTGTTCTTTCGGAGTA	0.473													27	73					0	0	0.002836	0	0
TBL1Y	90665	broad.mit.edu	37	Y	6955439	6955439	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrY:6955439C>T	uc004frb.2	+	17	2059	c.1412C>T	c.(1411-1413)TCC>TTC	p.S471F	TBL1Y_uc004frc.2_Missense_Mutation_p.S471F|TBL1Y_uc004frd.2_Missense_Mutation_p.S471F|TBL1Y_uc011nap.1_Missense_Mutation_p.S313F	NM_033284	NP_150600	Q9BQ87	TBL1Y_HUMAN	transducin beta-like 1Y	471	WD 7.				transcription, DNA-dependent						0						GCTAGTGGATCCTTTGACAAG	0.473													14	12					0	0	0.004007	0	0
PRKY	5616	broad.mit.edu	37	Y	7224202	7224202	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrY:7224202C>T	uc004fre.2	+	5	1086	c.746C>T	c.(745-747)CCG>CTG	p.P249L		NM_002760	NP_002751			RecName: Full=Serine/threonine-protein kinase PRKX;          EC=2.7.11.1; AltName: Full=Protein kinase PKX1;												0						GATGACAACCCGTTTGGCATT	0.373													6	5					0	0	0.001984	0	0
AGRN	375790	broad.mit.edu	37	1	980604	980626	+	Frame_Shift_Del	DEL	GCTGCCAGGACAATATCACCGCA	-	-	rs141886688		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:980604_980626delGCTGCCAGGACAATATCACCGCA	uc001ack.1	+	13	2368_2390	c.2318_2340delGCTGCCAGGACAATATCACCGCA	c.(2317-2340)TGCTGCCAGGACAATATCACCGCAfs	p.C773fs		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	773_780					axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		CCCTACGGCTGCTGCCAGGACAATATCACCGCAGCCCGGGGCG	0.686													7	32	---	---	---	---					
RAP1GAP	5909	broad.mit.edu	37	1	21936093	21936094	+	Frame_Shift_Ins	INS	-	G	G			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:21936093_21936094insG	uc001bex.2	-	15	1303_1304	c.1045_1046insC	c.(1045-1047)CTCfs	p.L349fs	RAP1GAP_uc001bev.2_Frame_Shift_Ins_p.L349fs|RAP1GAP_uc001bew.2_Frame_Shift_Ins_p.L413fs|RAP1GAP_uc001bey.2_Frame_Shift_Ins_p.L349fs	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	349	Rap-GAP.				regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		GGGGTCCGGGAGGGGGGGTCCA	0.634													43	151	---	---	---	---					
CRNN	49860	broad.mit.edu	37	1	152383381	152383381	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr1:152383381delA	uc001ezx.2	-	3	251	c.177delT	c.(175-177)CGTfs	p.R59fs		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	59	EF-hand.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CATCCAGCAGACGCAGGACCT	0.537													11	68	---	---	---	---					
SLK	9748	broad.mit.edu	37	10	105752748	105752748	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr10:105752748delA	uc001kxo.1	+	4	405	c.371delA	c.(370-372)GAGfs	p.E124fs	SLK_uc001kxp.1_Frame_Shift_Del_p.E124fs	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	124	Protein kinase.				apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		ATAGAACTTGAGAGACCATTA	0.323													19	28	---	---	---	---					
HNRNPM	4670	broad.mit.edu	37	19	8550606	8550606	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:8550606delT	uc010dwe.2	+	14	1374	c.1294delT	c.(1294-1296)TCCfs	p.S432fs	HNRNPM_uc010xke.1_Frame_Shift_Del_p.S378fs|HNRNPM_uc010dwd.2_Frame_Shift_Del_p.S393fs|HNRNPM_uc002mka.2_Frame_Shift_Del_p.S297fs|HNRNPM_uc002mkb.1_5'Flank	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	432	27 X 6 AA repeats of [GEVSTPAN]-[ILMV]- [DE]-[RH]-[MLVI]-[GAV].				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						TCGCGTGGGCTCCGAGATCGA	0.706													45	129	---	---	---	---					
GRIK5	2901	broad.mit.edu	37	19	42507603	42507615	+	Splice_Site	DEL	AACCTGGAGGGCG	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr19:42507603_42507615delAACCTGGAGGGCG	uc002osj.1	-	18	2428	c.2393_splice	c.e18-1	p.G798_splice	GRIK5_uc002osi.1_Splice_Site_p.G370_splice	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor							cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	TCCATGCCCAAACCTGGAGGGCGAAGGGAGTTG	0.573													8	73	---	---	---	---					
NFE2L2	4780	broad.mit.edu	37	2	178095665	178095666	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr2:178095665_178095666insT	uc002ulh.3	-	5	2220_2221	c.1665_1666insA	c.(1663-1668)AAACAAfs	p.K555fs	NFE2L2_uc002ulg.3_Frame_Shift_Ins_p.K539fs|NFE2L2_uc010zfa.1_Frame_Shift_Ins_p.K532fs|NFE2L2_uc002uli.3_Frame_Shift_Ins_p.K539fs	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	555_556					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			GTGCTGAGTTGTTTTTTCAGTA	0.361			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			50	125	---	---	---	---					
ZNF335	63925	broad.mit.edu	37	20	44578901	44578912	+	In_Frame_Del	DEL	GGTCTGGGTTGG	-	-	rs147383840		TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr20:44578901_44578912delGGTCTGGGTTGG	uc002xqw.2	-	22	3556_3567	c.3433_3444delCCAACCCAGACC	c.(3433-3444)CCAACCCAGACCdel	p.PTQT1145del	ZNF335_uc002xqv.2_In_Frame_Del_p.PTQT257del|ZNF335_uc010zxk.1_In_Frame_Del_p.PTQT990del	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	1145_1148					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				TCAGGATGATGGTCTGGGTTGGGGTCTGGGTA	0.608													21	144	---	---	---	---					
ERC2	26059	broad.mit.edu	37	3	56330206	56330206	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:56330206delA	uc003dhr.1	-	3	1171	c.915delT	c.(913-915)ATTfs	p.I305fs		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	305	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GAAGTTTTTTAATTGACTCAT	0.478													137	280	---	---	---	---					
PIGX	54965	broad.mit.edu	37	3	196449386	196449386	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr3:196449386delC	uc010iaj.2	+	3	435	c.154delC	c.(154-156)CCGfs	p.P52fs	PIGX_uc003fwx.3_Frame_Shift_Del_p.P52fs|PIGX_uc011btx.1_RNA	NM_017861	NP_060331	Q8TBF5	PIGX_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	93	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;1.08e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00322)		TTATGTGGATCCGTATGAGTT	0.408													64	126	---	---	---	---					
AKD1	221264	broad.mit.edu	37	6	109980446	109980454	+	In_Frame_Del	DEL	CTCTTCTTC	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr6:109980446_109980454delCTCTTCTTC	uc003ptn.2	-	7	684_692	c.607_615delGAAGAAGAG	c.(607-615)GAAGAAGAGdel	p.EEE203del	AKD1_uc003ptr.3_In_Frame_Del_p.EEE203del|AKD1_uc003pts.1_RNA	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	203_205	Glu-rich.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						cttcttcttgctcttcttcctcttcttcc	0.211													18	27	---	---	---	---					
KIAA1432	57589	broad.mit.edu	37	9	5772956	5772956	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:5772956delC	uc003zji.2	+	24	3715	c.3622delC	c.(3622-3624)CTTfs	p.L1208fs	KIAA1432_uc003zjl.3_Frame_Shift_Del_p.L1171fs|ERMP1_uc011lme.1_Intron	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	1287	Helical; (Potential).					integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		AGGCCTGATTCTTAGAGAATC	0.388													21	31	---	---	---	---					
PIP5K1B	8395	broad.mit.edu	37	9	71437594	71437594	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chr9:71437594delA	uc004agu.2	+	4	369	c.64delA	c.(64-66)AAAfs	p.K22fs	PIP5K1B_uc011lrq.1_Frame_Shift_Del_p.K22fs|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	22						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		AAAAACCTATAAAAAGGTGAG	0.393													33	28	---	---	---	---					
TAF7L	54457	broad.mit.edu	37	X	100547850	100547850	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A193-06A-12D-A197-08	TCGA-ER-A193-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	d939c477-a01f-4d54-bcfb-c9fdd957f2ec	87ca642a-dd4c-47ea-b81f-2d3402f2157a	g.chrX:100547850delC	uc004ehb.2	-	1	196	c.184delG	c.(184-186)GACfs	p.D62fs	TAF7L_uc004ehc.1_5'Flank	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	62					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						GTTTGAGTGTCCTCGTCGGCA	0.567													53	33	---	---	---	---					
