Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CAMTA1	23261	broad.mit.edu	37	1	7725032	7725033	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:7725032_7725033GG>AA	uc001aoi.2	+	9	2632_2633	c.2425_2426GG>AA	c.(2425-2427)GGG>AAG	p.G809K		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	809					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GTCAGAGGACGGGGCGCGGGCC	0.683000													27	160					0	0	0.004672	0	0
SLC45A1	50651	broad.mit.edu	37	1	8395589	8395589	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:8395589C>T	uc001apb.2	+	5	1536	c.1536C>T	c.(1534-1536)CTC>CTT	p.L512L	SLC45A1_uc001apc.2_Silent_p.L210L	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	512					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TGGGGCGCCTCTGCTCCACCA	0.652000													11	40					0	0	0.008291	0	0
C1orf200	644997	broad.mit.edu	37	1	9713874	9713874	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:9713874G>T	uc001aqc.3	-	2	617	c.467C>A	c.(466-468)ACC>AAC	p.T156N	PIK3CD_uc001aqa.2_Intron|PIK3CD_uc001aqb.3_Intron	NR_027045				RecName: Full=Putative uncharacterized protein C1orf200;												0	all_lung(157;0.222)	Renal(390;0.000469)|all_lung(118;0.000521)|Lung NSC(185;0.000744)|Colorectal(325;0.0062)|Breast(348;0.0157)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.86e-08)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(185;0.000231)|KIRC - Kidney renal clear cell carcinoma(229;0.000879)|BRCA - Breast invasive adenocarcinoma(304;0.00178)|STAD - Stomach adenocarcinoma(132;0.00331)|READ - Rectum adenocarcinoma(331;0.0419)		ATCTTGGCTGGTGAGAGGCCT	0.512000													12	115					1.05317e-09	1.48968e-09	0.002450	1	0
PTCHD2	57540	broad.mit.edu	37	1	11562914	11562914	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:11562914G>A	uc001ash.3	+	3	1414	c.1276G>A	c.(1276-1278)GTG>ATG	p.V426M	PTCHD2_uc001asi.1_Missense_Mutation_p.V426M	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	426	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TCAGAGCTTCGTGGTCACCTA	0.542000													7	36					0	0	0.003080	0	0
NPPA	4878	broad.mit.edu	37	1	11907371	11907372	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:11907371_11907372CC>GT	uc001ati.2	-	2	347_348	c.248_249GG>AC	c.(247-249)TGG>TAC	p.W83Y	CLCN6_uc010oav.1_Intron|CLCN6_uc010oaw.1_Intron|CLCN6_uc010oax.1_Intron|CLCN6_uc010oay.1_Intron|CLCN6_uc010oaz.1_Intron|CLCN6_uc010oba.1_Intron	NM_006172	NP_006163	P01160	ANF_HUMAN	natriuretic peptide precursor A preproprotein	83					cGMP biosynthetic process|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size	extracellular region	hormone activity			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00149)|all_lung(284;0.00189)|Breast(348;0.00586)|Colorectal(325;0.0062)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0556)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.04e-06)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|Kidney(185;0.000733)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTTCCCCGGTCCAGGGAGGCAC	0.629000													9	51					0	0	0.004672	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921089	12921089	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:12921089C>T	uc001aum.1	+	4	967	c.880C>T	c.(880-882)CCC>TCC	p.P294S		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	294											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTCCAGAACCCCTTGGAGAA	0.458000													18	103					0	0	0.006122	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	A	A	rs28392876	by1000genomes	TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:16946438G>A	uc010ocf.1	-	3		c.460C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCCTTCCGCCGGGCCAGCAGC	0.672000													3	10					0	0	0.000248	0	0
PADI2	11240	broad.mit.edu	37	1	17395641	17395641	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:17395641G>A	uc001baf.2	-	16	1978	c.1896C>T	c.(1894-1896)ATC>ATT	p.I632I	PADI2_uc010ocm.1_Silent_p.I516I	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	632					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	AAATGTCGTCGATGAAGGTGC	0.597000													19	86					0	0	0.002299	0	0
ZNF326	284695	broad.mit.edu	37	1	90473104	90473104	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:90473104C>T	uc001dnq.2	+	5	549	c.410C>T	c.(409-411)TCC>TTC	p.S137F	ZNF326_uc009wda.1_Intron|ZNF326_uc001dnr.2_Intron	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1	137	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		GCACCTTACTCCCGTTCAAAA	0.498000													10	52					0	0	0.006214	0	0
COL11A1	1301	broad.mit.edu	37	1	103470043	103470043	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:103470043C>T	uc001dul.2	-	20	2219	c.1901G>A	c.(1900-1902)GGA>GAA	p.G634E	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.G646E|COL11A1_uc001dun.2_Missense_Mutation_p.G595E|COL11A1_uc009weh.2_Missense_Mutation_p.G518E	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	634	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCCATCTTCTCCCTGTCATTG	0.284000													3	16					0	0	0.000602	0	0
TTF2	8458	broad.mit.edu	37	1	117635466	117635466	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:117635466C>T	uc001egy.2	+	18	2939	c.2919C>T	c.(2917-2919)TCC>TCT	p.S973S	MIR942_hsa-mir-942|MI0005767_5'Flank	NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	973					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		CCACTGTTTCCCTTAACGGCA	0.488000													12	58					0	0	0.001368	0	0
ETV3L	440695	broad.mit.edu	37	1	157062688	157062688	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:157062688G>A	uc001fqq.1	-	5	1124	c.839C>T	c.(838-840)GCC>GTC	p.A280V		NM_001004341	NP_001004341	Q6ZN32	ETV3L_HUMAN	ets variant 3-like	280	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Hepatocellular(266;0.158)	Prostate(1639;0.184)				AAAATGCCAGGCCCCTGGGAG	0.637000													9	27					0	0	0.004482	0	0
CD1B	910	broad.mit.edu	37	1	158299174	158299174	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:158299174A>T	uc001frx.2	-	4	980	c.872T>A	c.(871-873)ATC>AAC	p.I291N	CD1B_uc001frw.2_Intron	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	291	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					GTAGAGGATGATGTCCTGGCC	0.557000													5	50					0	0	0.001168	0	0
SPTA1	6708	broad.mit.edu	37	1	158618307	158618307	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:158618307C>T	uc001fst.1	-	26	3905	c.3706G>A	c.(3706-3708)GGA>AGA	p.G1236R		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1236	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ACCTTATCTCCCAGGGGTACG	0.498000													13	54					0	0	0.001368	0	0
F5	2153	broad.mit.edu	37	1	169541540	169541540	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:169541540T>C	uc001ggg.1	-	3	437	c.292A>G	c.(292-294)ATA>GTA	p.I98V	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	98	F5/8 type A 1.|Plastocyanin-like 1.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TGAACTTTTATGATGTCTCCG	0.353000													4	23					0	0	0.000602	0	0
PRDX6	9588	broad.mit.edu	37	1	173450482	173450482	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:173450482C>T	uc001giy.1	+	2	164	c.113C>T	c.(112-114)TCC>TTC	p.S38F		NM_004905	NP_004896	P30041	PRDX6_HUMAN	peroxiredoxin 6	38	Thioredoxin.				cell redox homeostasis|phospholipid catabolic process	cytoplasmic membrane-bounded vesicle|cytosol|lysosome	peroxiredoxin activity|phospholipase A2 activity|protein binding			central_nervous_system(1)	1						ATTCTCTTCTCCCACCCTCGG	0.453000													14	55					0	0	0.006122	0	0
FAM5B	57795	broad.mit.edu	37	1	177249597	177249597	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:177249597G>A	uc001glf.2	+	8	1597	c.1285G>A	c.(1285-1287)GAA>AAA	p.E429K	FAM5B_uc001glg.2_Missense_Mutation_p.E324K	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	429						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTACTGTGGGGAAAGCACCTT	0.542000													10	57					0	0	0.006214	0	0
FAM20B	9917	broad.mit.edu	37	1	179041234	179041234	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:179041234G>A	uc001gmc.2	+	8	1478	c.1185G>A	c.(1183-1185)ATG>ATA	p.M395I		NM_014864	NP_055679	O75063	XYLK_HUMAN	hypothetical protein LOC9917 precursor	395	Lumenal (Potential).					Golgi membrane|integral to membrane	ATP binding|kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(3)	3						AGTTTGGGATGGACACAGTAC	0.507000													7	24					0	0	0.001984	0	0
LGR6	59352	broad.mit.edu	37	1	202287116	202287116	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:202287116G>A	uc001gxu.2	+	18	1685	c.1685G>A	c.(1684-1686)TGG>TAG	p.W562*	LGR6_uc001gxv.2_Nonsense_Mutation_p.W510*|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Nonsense_Mutation_p.W423*	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	562	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						TTTGAAAGCTGGGGCATCCGC	0.617000													12	77					0	0	0.001855	0	0
DYRK3	8444	broad.mit.edu	37	1	206821975	206821975	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:206821975C>A	uc001hej.2	+	3	1600	c.1432C>A	c.(1432-1434)CCA>ACA	p.P478T	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.P458T	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	478	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			GCGGGGTCCCCCAGGCAGCAA	0.562000													5	117					0.000602214	0.000832644	0.000602	1	0
USH2A	7399	broad.mit.edu	37	1	215844631	215844631	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:215844631C>T	uc001hku.1	-	64	14203	c.13816G>A	c.(13816-13818)GAA>AAA	p.E4606K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4606	Fibronectin type-III 31.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATTCGTATTTCATACCTTCAG	0.418000										HNSCC(13;0.011)			6	22					0	0	0.001168	0	0
RHOU	58480	broad.mit.edu	37	1	228871620	228871620	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:228871620G>C	uc001htf.2	+	1	752	c.131G>C	c.(130-132)GGT>GCT	p.G44A		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	44	Gly-rich.				regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				cgtgcggggggtgccgagggg	0.488000													3	18					0	0	0.004672	0	0
AGT	183	broad.mit.edu	37	1	230845971	230845971	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:230845971A>G	uc001hty.3	-	2	1134	c.626T>C	c.(625-627)GTG>GCG	p.V209A	AGT_uc009xfe.2_Missense_Mutation_p.V209A|AGT_uc009xff.2_Missense_Mutation_p.V181A	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	209					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	GAACACGCCCACCACCGTGGA	0.647000													6	36					0	0	0.001168	0	0
EFCAB2	84288	broad.mit.edu	37	1	245180564	245180564	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:245180564C>T	uc001ibd.2	+	3	595	c.454C>T	c.(454-456)CAC>TAC	p.H152Y	EFCAB2_uc001ibc.2_Missense_Mutation_p.H16Y|EFCAB2_uc010pyo.1_Missense_Mutation_p.H26Y|EFCAB2_uc010pyp.1_Missense_Mutation_p.H16Y|EFCAB2_uc001ibe.2_Intron	NR_026586		Q5VUJ9	EFCB2_HUMAN	RecName: Full=EF-hand calcium-binding domain-containing protein 2;	152	EF-hand 1.						calcium ion binding				0	all_cancers(71;2.93e-06)|all_epithelial(71;2.13e-05)|all_lung(81;0.0337)|Lung NSC(105;0.0472)|Ovarian(71;0.0584)|Breast(184;0.0716)|all_neural(11;0.0982)		OV - Ovarian serous cystadenocarcinoma(106;0.015)			AGCAGAATTTCACAAAAAAAT	0.279000													4	39					0	0	0.001168	0	0
ZNF670	93474	broad.mit.edu	37	1	247202174	247202174	+	Splice_Site	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:247202174T>G	uc001icd.1	-	3	302	c.131_splice	c.e3-1	p.G44_splice	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron	NM_033213	NP_149990	Q9BS34	ZN670_HUMAN	zinc finger protein 670						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00427)			ATTTGTTTCCTAAAAGGTACA	0.333000													4	30					0	0	0.000248	0	0
OR11L1	391189	broad.mit.edu	37	1	248004713	248004713	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:248004713C>T	uc001idn.1	-	1	486	c.486G>A	c.(484-486)ATG>ATA	p.M162I		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ACCTGGAAATCATCAGGGAAG	0.557000													11	62					0	0	0.000978	0	0
OR2M3	127062	broad.mit.edu	37	1	248366969	248366969	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr1:248366969C>T	uc010pzg.1	+	1	600	c.600C>T	c.(598-600)TTC>TTT	p.F200F		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGATTCTTTTCATCTGCTGTA	0.443000													15	119					0	0	0.003163	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22830847	22830848	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr10:22830847_22830848GG>AA	uc001irl.3	-	8	1169_1170	c.921_922CC>TT	c.(919-924)ACCCAC>ACTTAC	p.H308Y	PIP4K2A_uc010qcu.1_Missense_Mutation_p.H168Y	NM_005028	NP_005019	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	308	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			ovary(1)|skin(1)	2						CCCACCGGGTGGGTGCCATCGC	0.599000													6	48					0	0	0.004672	0	0
OR13A1	79290	broad.mit.edu	37	10	45799336	45799336	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr10:45799336C>T	uc001jcc.1	-	4	844	c.535G>A	c.(535-537)GGG>AGG	p.G179R	OR13A1_uc001jcd.1_Missense_Mutation_p.G175R	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCATCAGCCCCGTGTGGATG	0.602000													5	43					0	0	0.000602	0	0
CHUK	1147	broad.mit.edu	37	10	101978865	101978865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr10:101978865G>A	uc001kqp.2	-	7	644	c.589C>T	c.(589-591)CCT>TCT	p.P197S		NM_001278	NP_001269	O15111	IKKA_HUMAN	conserved helix-loop-helix ubiquitous kinase	197	Protein kinase.				I-kappaB phosphorylation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|nucleus	ATP binding|identical protein binding|IkappaB kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|breast(1)	7		Colorectal(252;0.117)		Epithelial(162;2.05e-10)|all cancers(201;1.91e-08)		GCTGTGTAAGGCTTATTCTCA	0.393000													5	60					0	0	0.001168	0	0
SEC31B	25956	broad.mit.edu	37	10	102249812	102249812	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr10:102249812G>A	uc001krc.1	-	21	3020	c.2918C>T	c.(2917-2919)CCA>CTA	p.P973L	SEC31B_uc010qpo.1_Missense_Mutation_p.P972L|SEC31B_uc001krd.1_Missense_Mutation_p.P510L|SEC31B_uc001krf.1_Intron|SEC31B_uc001kre.1_Intron	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	973	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		ACTAGAGCATGGGGCACCTGG	0.607000													12	53					0	0	0.002450	0	0
MRPL43	84545	broad.mit.edu	37	10	102746603	102746603	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr10:102746603T>C	uc001kry.1	-	3	440	c.368A>G	c.(367-369)AAC>AGC	p.N123S	MRPL43_uc010qpu.1_Missense_Mutation_p.N123S|MRPL43_uc001krz.1_Intron|MRPL43_uc001ksa.1_Missense_Mutation_p.N123S|MRPL43_uc001ksb.1_Missense_Mutation_p.N123S|MRPL43_uc001ksd.1_Missense_Mutation_p.N123S|MRPL43_uc001ksc.2_Missense_Mutation_p.N123S|MRPL43_uc001kse.2_Missense_Mutation_p.N161S|C10orf2_uc001ksg.2_5'Flank|C10orf2_uc001ksf.2_5'Flank|C10orf2_uc001ksi.2_5'Flank|C10orf2_uc010qpv.1_5'Flank|C10orf2_uc001ksh.2_5'Flank	NM_176792	NP_789762	Q8N983	RM43_HUMAN	mitochondrial ribosomal protein L43 isoform b	123					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;6.21e-09)|all cancers(201;3.14e-07)		GATGCTAGGGTTGTCGGTGTG	0.652000													3	29					0	0	0.000602	0	0
SORCS3	22986	broad.mit.edu	37	10	106737111	106737111	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr10:106737111C>T	uc001kyi.1	+	4	1041	c.814C>T	c.(814-816)CCT>TCT	p.P272S		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	272	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TCTCAGTGATCCTGAGATGGA	0.388000													4	46					0	0	0.000602	0	0
PRLHR	2834	broad.mit.edu	37	10	120354717	120354717	+	Silent	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr10:120354717A>G	uc001ldp.1	-	2	179	c.40T>C	c.(40-42)TTA>CTA	p.L14L		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	14	Extracellular (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		CCAGAAAATAAGTCAGAAACC	0.637000													3	69					0	0	0.000248	0	0
DMBT1	1755	broad.mit.edu	37	10	124399744	124399744	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr10:124399744C>T	uc001lgk.1	+	52	6850	c.6744C>T	c.(6742-6744)GTC>GTT	p.V2248V	DMBT1_uc001lgl.1_Silent_p.V2238V|DMBT1_uc001lgm.1_Silent_p.V1620V|DMBT1_uc009xzz.1_Silent_p.V2247V|DMBT1_uc010qtx.1_Silent_p.V968V|DMBT1_uc009yab.1_Silent_p.V951V|DMBT1_uc009yac.1_Silent_p.V542V	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2248	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCGAGGAAGTCCAGTATGGCA	0.473000													13	126					0	0	0.007413	0	0
MUC2	4583	broad.mit.edu	37	11	1097804	1097804	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr11:1097804C>A	uc001lsx.1	+	39	14010	c.13983C>A	c.(13981-13983)TGC>TGA	p.C4661*		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4661	VWFD 4.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	AGCCACACTGCCCCCACAGCA	0.667000													5	12					0.000602214	0.000832644	0.000602	1	0
OR51I1	390063	broad.mit.edu	37	11	5461848	5461848	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr11:5461848C>T	uc010qze.1	-	1	897	c.897G>A	c.(895-897)AAG>AAA	p.K299K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCGGATCTCCTTGGTTTTCA	0.473000													5	43					0	0	0.000602	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956328	18956328	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr11:18956328C>A	uc001mpg.2	-	1	222	c.4G>T	c.(4-6)GAT>TAT	p.D2Y		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	2	Extracellular (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						ATGGTTGGATCCATGCTCAGA	0.408000													13	214					7.93312e-07	1.11478e-06	0.002450	1	0
C11orf9	745	broad.mit.edu	37	11	61550977	61550977	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr11:61550977C>T	uc001nsc.1	+	23	3120	c.3024C>T	c.(3022-3024)CTC>CTT	p.L1008L	C11orf9_uc001nse.1_Intron|C11orf9_uc010rll.1_Intron	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	1008					central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CAGCCTCTCTCCTTGCAGAGC	0.562000													8	115					0	0	0.003080	0	0
LRP5	4041	broad.mit.edu	37	11	68207324	68207324	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr11:68207324C>T	uc001ont.2	+	21	4503	c.4428C>T	c.(4426-4428)AAC>AAT	p.N1476N	LRP5_uc009ysg.2_Silent_p.N886N	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1476	Cytoplasmic (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						ACGACCGGAACCACGTCACAG	0.567000													6	20					0	0	0.003080	0	0
MYO7A	4647	broad.mit.edu	37	11	76872132	76872132	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr11:76872132C>T	uc001oyb.2	+	12	1586	c.1314C>T	c.(1312-1314)ATC>ATT	p.I438I	MYO7A_uc010rsl.1_Silent_p.I438I|MYO7A_uc010rsm.1_Silent_p.I427I|MYO7A_uc001oyc.2_Silent_p.I438I	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	438	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						TCCTGGACATCTTTGGGTTTG	0.507000													6	34					0	0	0.004482	0	0
MLL	4297	broad.mit.edu	37	11	118343772	118343772	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr11:118343772C>T	uc001pta.2	+	3	1921	c.1898C>T	c.(1897-1899)TCC>TTC	p.S633F	MLL_uc001ptb.2_Missense_Mutation_p.S633F|MLL_uc001psz.1_Missense_Mutation_p.S666F|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	633					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CAATACTTTTCCTCAGCAAAG	0.443000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								15	47					0	0	0.002450	0	0
FOXM1	2305	broad.mit.edu	37	12	2983187	2983187	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:2983187G>A	uc001qlf.2	-	2	723	c.458C>T	c.(457-459)CCT>CTT	p.P153L	FOXM1_uc001qle.2_Missense_Mutation_p.P153L|FOXM1_uc001qlg.2_Missense_Mutation_p.P153L|FOXM1_uc009zea.2_Missense_Mutation_p.P153L|FOXM1_uc009zeb.2_Missense_Mutation_p.P153L	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	153					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			AGGTGGTCTAGGAAGATTCAC	0.562000													24	90					0	0	0.002780	0	0
CD163	9332	broad.mit.edu	37	12	7635321	7635321	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:7635321C>T	uc001qsz.3	-	14	3293	c.3165G>A	c.(3163-3165)GGG>GGA	p.G1055G	CD163_uc001qta.3_Silent_p.G1055G|CD163_uc009zfw.2_Silent_p.G1088G	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1055	Helical; (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CCCCAAGGATCCCGACTGCAA	0.428000													16	49					0	0	0.003163	0	0
LRP6	4040	broad.mit.edu	37	12	12303966	12303966	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:12303966G>C	uc001rah.3	-	13	2940	c.2798C>G	c.(2797-2799)ACG>AGG	p.T933R	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.T933R	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	933	Extracellular (Potential).|Beta-propeller 4.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				CAGGAAAGTCGTAGGAGCTTA	0.353000													6	224					0	0	0.001168	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54911350	54911350	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:54911350C>T	uc001sgc.3	+	12	1208	c.1129C>T	c.(1129-1131)CGT>TGT	p.R377C	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.R327C	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	377					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GTCCTTCATTCGTGATGAGGT	0.438000													7	48					0	0	0.006214	0	0
ESYT1	23344	broad.mit.edu	37	12	56536866	56536866	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:56536866A>G	uc001sjq.2	+	28	3103	c.3053A>G	c.(3052-3054)AAG>AGG	p.K1018R	ESYT1_uc001sjr.2_Missense_Mutation_p.K1028R	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	1018	C2 5.					integral to membrane				ovary(4)|skin(1)	5						CTGCCAGACAAGAACCGAGGC	0.512000													11	67					0	0	0.008291	0	0
PTPRR	5801	broad.mit.edu	37	12	71286690	71286690	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:71286690G>A	uc001swi.1	-	2	542	c.126C>T	c.(124-126)TTC>TTT	p.F42F		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	42	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		GCTTATAAATGAATACCGGCT	0.393000													5	65					0	0	0.000602	0	0
OSBPL8	114882	broad.mit.edu	37	12	76767208	76767208	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:76767208G>A	uc001sye.1	-	18	2313	c.1833C>T	c.(1831-1833)TTC>TTT	p.F611F	OSBPL8_uc001syf.1_Silent_p.F569F|OSBPL8_uc001syg.1_Silent_p.F569F|OSBPL8_uc001syh.1_Silent_p.F586F	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	611					lipid transport		lipid binding			ovary(1)	1						TACTCCCTAGGAATGGCTTTT	0.303000													4	30					0	0	0.000248	0	0
C12orf63	374467	broad.mit.edu	37	12	97147663	97147663	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:97147663C>T	uc001tet.1	+	23	3180	c.3102C>T	c.(3100-3102)ATC>ATT	p.I1034I		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1034										skin(6)|ovary(1)	7						AAGCTGAAATCCTTTTTCAGA	0.418000													8	24					0	0	0.006214	0	0
KCTD10	83892	broad.mit.edu	37	12	109895484	109895484	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:109895484C>T	uc001toi.1	-	5	566	c.478G>A	c.(478-480)GCC>ACC	p.A160T	KCTD10_uc001toh.1_RNA|KCTD10_uc009zvi.1_Missense_Mutation_p.A157T|KCTD10_uc001toj.1_Missense_Mutation_p.A169T|KCTD10_uc001tok.1_5'UTR	NM_031954	NP_114160	Q9H3F6	BACD3_HUMAN	potassium channel tetramerisation domain	160					proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|nucleus|voltage-gated potassium channel complex	voltage-gated potassium channel activity				0						AACTTCACGGCTGGCTGTGGG	0.478000													5	36					0	0	0.001168	0	0
CUX2	23316	broad.mit.edu	37	12	111748275	111748275	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:111748275G>A	uc001tsa.1	+	15	1842	c.1689G>A	c.(1687-1689)AAG>AAA	p.K563K		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	563	CUT 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TCCAGGTGAAGGAGCAGCTGC	0.687000													6	57					0	0	0.003080	0	0
DNAH10	196385	broad.mit.edu	37	12	124401078	124401078	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:124401078C>T	uc001uft.3	+	62	10468	c.10443C>T	c.(10441-10443)TTC>TTT	p.F3481F		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3481	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTTTCCTGTTCCGCGATGTTG	0.463000													6	81					0	0	0.001984	0	0
EP400	57634	broad.mit.edu	37	12	132551950	132551950	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:132551950G>A	uc001ujn.2	+	49	8828	c.8793G>A	c.(8791-8793)CTG>CTA	p.L2931L	EP400_uc001ujl.2_Silent_p.L2930L|EP400_uc001ujm.2_Silent_p.L2850L|EP400_uc001ujp.2_Silent_p.L141L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2967					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		AGCAGCTGCTGAAGCTGAAGC	0.642000													9	73					0	0	0.004482	0	0
EP400	57634	broad.mit.edu	37	12	132562000	132562000	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr12:132562000C>T	uc001ujn.2	+	52	9189	c.9154C>T	c.(9154-9156)CAG>TAG	p.Q3052*	EP400_uc001ujl.2_Nonsense_Mutation_p.Q3051*|EP400_uc001ujm.2_Nonsense_Mutation_p.Q2971*|EP400_uc001ujp.2_Nonsense_Mutation_p.Q262*|EP400_uc010tbo.1_Missense_Mutation_p.A118V	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	3088					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GCAGCAGGTGCAGATGATCCC	0.627000													6	63					0	0	0.001984	0	0
USPL1	10208	broad.mit.edu	37	13	31232501	31232501	+	Silent	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr13:31232501T>C	uc001utc.2	+	9	2719	c.2287T>C	c.(2287-2289)TTA>CTA	p.L763L	USPL1_uc001utd.2_Silent_p.L434L|USPL1_uc001ute.1_Silent_p.L434L	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	763					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		GGTTAAAGGCTTAATAAGCAG	0.363000													9	61					0	0	0.004482	0	0
NEK3	4752	broad.mit.edu	37	13	52709904	52709904	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr13:52709904G>A	uc001vgi.2	-	16	1505	c.1270C>T	c.(1270-1272)CTC>TTC	p.L424F	NEK3_uc001vgg.2_Missense_Mutation_p.L401F|NEK3_uc001vgh.2_Missense_Mutation_p.L428F|NEK3_uc010tgx.1_RNA|NEK3_uc010tgy.1_Missense_Mutation_p.L407F	NM_152720	NP_689933	P51956	NEK3_HUMAN	NIMA-related kinase 3 isoform a	424					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.034)|Hepatocellular(98;0.065)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.81e-08)		GCCAAGCTGAGATCAGCATTC	0.358000													6	48					0	0	0.001168	0	0
KLHL1	57626	broad.mit.edu	37	13	70314559	70314559	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr13:70314559C>T	uc001vip.2	-	8	2563	c.1769G>A	c.(1768-1770)CGG>CAG	p.R590Q	KLHL1_uc010thm.1_Missense_Mutation_p.R529Q	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	590	Kelch 3.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		AACTGTGCTCCGAGCAATTGA	0.378000													4	20					0	0	0.000248	0	0
MYCBP2	23077	broad.mit.edu	37	13	77672656	77672656	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr13:77672656G>A	uc001vkf.2	-	57	8610	c.8519C>T	c.(8518-8520)CCA>CTA	p.P2840L	MYCBP2_uc010aev.2_Missense_Mutation_p.P2244L|MYCBP2_uc001vkg.1_Missense_Mutation_p.P363L|MYCBP2_uc010aew.2_Missense_Mutation_p.P226L	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	2840					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GAGGGTATCTGGATCAAGTGT	0.433000													7	32					0	0	0.001984	0	0
OR11H12	440153	broad.mit.edu	37	14	19378555	19378555	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:19378555G>A	uc010tkp.1	+	1	962	c.962G>A	c.(961-963)GGA>GAA	p.G321E		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	321	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAAGTTCTGGGAAGTTCCAAC	0.363000													13	50					0	0	0.003163	0	0
OR4M1	441670	broad.mit.edu	37	14	20248589	20248589	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:20248589G>A	uc010tku.1	+	1	108	c.108G>A	c.(106-108)TTG>TTA	p.L36L		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCTTCTATTTGTTCATCCTAC	0.433000													7	198					0	0	0.003080	0	0
SLC7A7	9056	broad.mit.edu	37	14	23243589	23243589	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:23243589C>T	uc001wgr.3	-	8	1357	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K	SLC7A7_uc001wgs.3_Missense_Mutation_p.E407K|SLC7A7_uc001wgt.3_Missense_Mutation_p.E407K|SLC7A7_uc001wgu.3_Missense_Mutation_p.E407K|SLC7A7_uc001wgv.3_Missense_Mutation_p.E407K	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	407					blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		CGATCAGGCTCCTTCCAGCGC	0.507000													9	103					0	0	0.006214	0	0
MYH7	4625	broad.mit.edu	37	14	23888691	23888691	+	Splice_Site	SNP	C	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:23888691C>A	uc001wjx.2	-	28	3959	c.3853_splice	c.e28+1	p.G1285_splice	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta						adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCTAGGCTCACCATTCTCGGT	0.597000													14	85					1.3612e-06	1.90657e-06	0.003163	1	0
HEATR5A	25938	broad.mit.edu	37	14	31774132	31774132	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:31774132G>A	uc001wrf.3	-	26	4416	c.4339C>T	c.(4339-4341)CCT>TCT	p.P1447S	HEATR5A_uc010ami.2_Missense_Mutation_p.P1345S	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1734							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CACACTGCAGGAAGTTCGGAA	0.418000													5	29					0	0	0.000602	0	0
KCNH5	27133	broad.mit.edu	37	14	63453887	63453887	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:63453887C>T	uc001xfx.2	-	5	503	c.452G>A	c.(451-453)CGA>CAA	p.R151Q	KCNH5_uc001xfy.2_Missense_Mutation_p.R151Q|KCNH5_uc001xfz.1_Missense_Mutation_p.R93Q|KCNH5_uc001xga.2_Missense_Mutation_p.R93Q	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	151	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CCGTGTCAATCGGGCAAATTT	0.378000													7	43					0	0	0.003080	0	0
ADAM20	8748	broad.mit.edu	37	14	70989757	70989757	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:70989757G>A	uc001xme.2	-	2	2113	c.1868C>T	c.(1867-1869)CCC>CTC	p.P623L		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	573	Cys-rich.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		TATCAGATTGGGAATTACTCC	0.443000													4	33					0	0	0.000248	0	0
CCDC88C	440193	broad.mit.edu	37	14	91780279	91780279	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:91780279C>T	uc010aty.2	-	15	1980	c.1881G>A	c.(1879-1881)GGG>GGA	p.G627G		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	627	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CTGCCCGCTCCCCCTTCTCCT	0.632000													3	25					0	0	0.004672	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103404651	103404651	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:103404651G>A	uc001ymi.1	-	35	5157	c.4925C>T	c.(4924-4926)CCC>CTC	p.P1642L		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1642					actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		ACCTGATGAGGGCCACGAGAT	0.667000													7	91					0	0	0.003080	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103442137	103442137	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:103442137G>A	uc001ymi.1	-	11	1623	c.1391C>T	c.(1390-1392)TCC>TTC	p.S464F		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	464	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		GGTCTGGGTGGACTCTGAGGG	0.602000													15	155					0	0	0.006122	0	0
KIAA0284	283638	broad.mit.edu	37	14	105355980	105355980	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:105355980A>G	uc010axb.2	+	13	3987	c.3763A>G	c.(3763-3765)AGC>GGC	p.S1255G	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.S1185G|KIAA0284_uc001yps.2_Missense_Mutation_p.S1196G|KIAA0284_uc001ypt.2_5'UTR	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	1290						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		GAGGGCTGGCAGCTCCAGCCG	0.557000													8	29					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	106518634	106518634	+	RNA	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr14:106518634G>A	uc010tyt.1	-	1630		c.32803C>T								Parts of antibodies, mostly variable regions.												0						CTGCACAGGAGAGTCTCAGGG	0.582000													7	68					0	0	0.001984	0	0
ZNF770	54989	broad.mit.edu	37	15	35274830	35274830	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr15:35274830C>T	uc001ziw.2	-	3	1117	c.806G>A	c.(805-807)GGT>GAT	p.G269D		NM_014106	NP_054825	Q6IQ21	ZN770_HUMAN	zinc finger protein 770	269					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(122;4.59e-10)|all_lung(180;8.78e-09)		all cancers(64;1.97e-18)|GBM - Glioblastoma multiforme(113;2.11e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0643)		ATTTTCAAAACCACCCTGATT	0.388000													11	23					0	0	0.008291	0	0
BUB1B	701	broad.mit.edu	37	15	40493133	40493133	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr15:40493133G>A	uc001zkx.3	+	12	1731	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	BUB1B_uc010ucl.1_Missense_Mutation_p.E370K	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	507					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		TCTTTACAGAGAAACTTCACT	0.328000			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				24	47					0	0	0.008361	0	0
ZFP106	64397	broad.mit.edu	37	15	42743543	42743543	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr15:42743543G>C	uc001zpw.2	-	2	1193	c.858C>G	c.(856-858)GAC>GAG	p.D286E	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Missense_Mutation_p.D69E|ZFP106_uc001zpy.1_Missense_Mutation_p.D309E	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	286						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TACCAAGTTTGTCATTTTCTT	0.383000													3	59					0	0	0.000602	0	0
ADAM10	102	broad.mit.edu	37	15	58925492	58925492	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr15:58925492G>A	uc002afd.1	-	9	1523	c.1079C>T	c.(1078-1080)ACT>ATT	p.T360I	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Missense_Mutation_p.T59I|ADAM10_uc002afe.1_Intron	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	360	Peptidase M12B.|Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		AATAATTCCAGTGTTTAAGGA	0.368000													4	29					0	0	0.000248	0	0
CLK3	1198	broad.mit.edu	37	15	74919947	74919947	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr15:74919947A>G	uc010uln.1	+	9	1885	c.1424A>G	c.(1423-1425)GAC>GGC	p.D475G	CLK3_uc002ayg.3_Missense_Mutation_p.D327G|CLK3_uc002ayh.3_Missense_Mutation_p.D106G|CLK3_uc002ayj.3_Missense_Mutation_p.D304G|CLK3_uc002ayk.3_Missense_Mutation_p.D254G|CLK3_uc002ayl.3_Missense_Mutation_p.D160G	NM_001130028	NP_001123500	P49761	CLK3_HUMAN	CDC-like kinase 3 isoform a	475	Protein kinase.					acrosomal vesicle|nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)	2						GCCACATTTGACCATGAGCAC	0.562000													7	121					0	0	0.001984	0	0
AGBL1	123624	broad.mit.edu	37	15	86822934	86822934	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr15:86822934A>G	uc002blz.1	+	15	2082	c.2002A>G	c.(2002-2004)ACC>GCC	p.T668A	AGBL1_uc002bma.1_Missense_Mutation_p.T399A|AGBL1_uc002bmb.1_Missense_Mutation_p.T362A	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	668					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						CTATACCCTCACCTTTGCTGT	0.413000													16	86					0	0	0.004007	0	0
PGPEP1L	145814	broad.mit.edu	37	15	99512803	99512803	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr15:99512803C>T	uc002bum.2	-	4	428	c.222G>A	c.(220-222)CGG>CGA	p.R74R	PGPEP1L_uc010bop.2_Silent_p.R20R|PGPEP1L_uc002bun.2_RNA	NM_001102612	NP_001096082	A6NFU8	PGPIL_HUMAN	pyroglutamyl-peptidase 1-like protein	74					proteolysis		cysteine-type peptidase activity				0						TGTCGGCGTCCCGGTAGCCTT	0.627000													30	52					0	0	0.007291	0	0
C1QTNF8	390664	broad.mit.edu	37	16	1144753	1144753	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:1144753G>A	uc010uuw.1	-	3	444	c.170C>T	c.(169-171)CCT>CTT	p.P57L		NM_207419	NP_997302	P60827	C1QT8_HUMAN	C1q and tumor necrosis factor related protein 8	57						collagen				skin(1)	1		Hepatocellular(780;0.00369)				CCGTACTCGAGGCAGCCCCCT	0.672000													10	44					0	0	0.000978	0	0
ABCA3	21	broad.mit.edu	37	16	2334337	2334337	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:2334337C>T	uc002cpy.1	-	25	4517	c.3805G>A	c.(3805-3807)GAG>AAG	p.E1269K	ABCA3_uc010bsk.1_Missense_Mutation_p.E1211K	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	1269					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CTCCGCGTCTCGTAGTTCTCG	0.577000													13	42					0	0	0.001368	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858800	9858800	+	Silent	SNP	G	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:9858800G>T	uc002czo.3	-	13	3149	c.2601C>A	c.(2599-2601)ATC>ATA	p.I867I	GRIN2A_uc010uym.1_Silent_p.I867I|GRIN2A_uc010uyn.1_Silent_p.I710I|GRIN2A_uc002czr.3_Silent_p.I867I	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	867	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGCAGCTGTAGATGCCCTGTA	0.468000													6	75					0.00116845	0.00161036	0.001168	1	0
DNAH3	55567	broad.mit.edu	37	16	20970677	20970677	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:20970677C>T	uc010vbe.1	-	54	10650	c.10650G>A	c.(10648-10650)CAG>CAA	p.Q3550Q	DNAH3_uc010vbd.1_Silent_p.Q985Q	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3550	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GGGAGATGGTCTGTGTTCTGG	0.522000													12	109					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	16	28354353	28354353	+	Missense_Mutation	SNP	T	G	G	rs1794256	by1000genomes	TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:28354353T>G	uc010vcq.1	-	7	852	c.799A>C	c.(799-801)ACT>CCT	p.T267P	uc010vcr.1_Missense_Mutation_p.T285P					SubName: Full=LOC728741 protein;																		AGACACTCAGTAGGTGTCTTG	0.507000													3	21					0	0	0.000248	0	0
NOD2	64127	broad.mit.edu	37	16	50763802	50763802	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:50763802C>T	uc002egm.1	+	11	3145	c.3040C>T	c.(3040-3042)CTG>TTG	p.L1014L	NOD2_uc010vgq.1_Silent_p.L59L	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	1014	LRR 9.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				TGACACCATCCTGGAAGTCTG	0.299000													4	41					0	0	0.000248	0	0
CES2	8824	broad.mit.edu	37	16	66974523	66974523	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:66974523C>T	uc002eqr.2	+	5	1933	c.933C>T	c.(931-933)TTC>TTT	p.F311F	CES2_uc002eqq.2_Silent_p.F311F|CES2_uc002eqs.2_Silent_p.F154F	NM_003869	NP_003860	O00748	EST2_HUMAN	carboxylesterase 2 isoform 1	247					catabolic process	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0663)|Epithelial(162;0.166)		AAGGACTCTTCCACGGAGCCA	0.597000													13	65					0	0	0.001368	0	0
DPEP2	64174	broad.mit.edu	37	16	68021800	68021800	+	Silent	SNP	A	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:68021800A>C	uc010cey.2	-	9	1325	c.1161T>G	c.(1159-1161)GGT>GGG	p.G387G	DPEP2_uc002evd.3_Silent_p.G392G|DPEP2_uc002eve.2_Silent_p.G387G|DPEP2_uc002evf.2_RNA	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	387					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		CACGAAGGACACCCTGAAGCT	0.567000													19	98					0	0	0.002780	0	0
SF3B3	23450	broad.mit.edu	37	16	70605701	70605702	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:70605701_70605702CC>TT	uc002ezf.2	+	26	3850_3851	c.3639_3640CC>TT	c.(3637-3642)ACCCGC>ACTTGC	p.R1214C		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	1214					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				ATATCCGGACCCGCTACGCCTT	0.550000													4	45					0	0	0.004672	0	0
CDH13	1012	broad.mit.edu	37	16	83636110	83636110	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr16:83636110G>T	uc002fgx.2	+	8	1132	c.1012G>T	c.(1012-1014)GGA>TGA	p.G338*	CDH13_uc010vns.1_Nonsense_Mutation_p.G385*|CDH13_uc010vnt.1_Nonsense_Mutation_p.G84*|CDH13_uc010vnu.1_Nonsense_Mutation_p.G299*	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	338	Cadherin 2.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		AGATATGGCTGGACTGGATGT	0.418000													27	169					3.73148e-12	5.31303e-12	0.007291	1	0
MYH2	4620	broad.mit.edu	37	17	10433034	10433034	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr17:10433034C>T	uc010coi.2	-	24	3092	c.2964G>A	c.(2962-2964)ATG>ATA	p.M988I	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.M988I|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	988	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CCAGACCTGCCATCTCTTCTG	0.498000													20	105					0	0	0.003954	0	0
MYH2	4620	broad.mit.edu	37	17	10436609	10436609	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr17:10436609C>T	uc010coi.2	-	21	2562	c.2434G>A	c.(2434-2436)GAG>AAG	p.E812K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E812K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	812	IQ.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TACCTTCTCTCCACCATCCTC	0.433000													4	54					0	0	0.000248	0	0
DNAH9	1770	broad.mit.edu	37	17	11865491	11865491	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr17:11865491A>G	uc002gne.2	+	68	13219	c.13151A>G	c.(13150-13152)AAC>AGC	p.N4384S	DNAH9_uc010coo.2_Missense_Mutation_p.N3602S|DNAH9_uc002gnf.2_Missense_Mutation_p.N696S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4384					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACGAAGAAGAACAGAGAAGAG	0.547000													6	50					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	17	19349917	19349917	+	RNA	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr17:19349917G>A	uc002gvw.2	-	1		c.262C>T								Homo sapiens mRNA for ribosomal protein S2, partial cds.																		GCAGGGAGAAGAGATAGATCT	0.522000													5	16					0	0	0.003080	0	0
ATXN7L3	56970	broad.mit.edu	37	17	42274730	42274730	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr17:42274730C>T	uc002iga.2	-	3	313	c.222G>A	c.(220-222)CAG>CAA	p.Q74Q	ATXN7L3_uc010wiv.1_5'Flank|ATXN7L3_uc002ifz.2_Silent_p.Q74Q	NM_001098833	NP_001092303	Q14CW9	AT7L3_HUMAN	ataxin 7-like 3 isoform b	74					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|metal ion binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GGTTGAAAACCTGTCCAAAGA	0.597000													13	92					0	0	0.004007	0	0
LPO	4025	broad.mit.edu	37	17	56329569	56329569	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr17:56329569G>A	uc002ivt.2	+	8	1123	c.807G>A	c.(805-807)GGG>GGA	p.G269G	LPO_uc010wns.1_Silent_p.G210G|LPO_uc010dcp.2_Silent_p.G186G|LPO_uc010dcq.2_Intron|LPO_uc010dcr.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	269					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						CCAAGGCGGGGACTCAAGGGA	0.607000													6	31					0	0	0.001984	0	0
FTSJ3	117246	broad.mit.edu	37	17	61899393	61899393	+	Missense_Mutation	SNP	C	G	G	rs148527553		TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr17:61899393C>G	uc002jbz.2	-	13	1504	c.1426G>C	c.(1426-1428)GAG>CAG	p.E476Q	FTSJ3_uc002jca.2_Missense_Mutation_p.E476Q	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	476					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						GCCAGCTCCTCTGGATCCAGG	0.527000													27	53					0	0	0.002096	0	0
LOC146880	146880	broad.mit.edu	37	17	62750560	62750560	+	RNA	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr17:62750560G>A	uc010wqc.1	-	9		c.2054C>T				NR_026899				Homo sapiens cDNA FLJ30780 fis, clone FEBRA2000856.												0						CGCTGACAAGGAATGGGACTA	0.403000													36	148					0	0	0.005524	0	0
KIAA0802	23255	broad.mit.edu	37	18	8784400	8784400	+	Missense_Mutation	SNP	C	G	G	rs145456770		TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr18:8784400C>G	uc002knr.2	+	6	1432	c.1290C>G	c.(1288-1290)AGC>AGG	p.S430R	KIAA0802_uc002knq.2_Missense_Mutation_p.S430R|KIAA0802_uc010dkw.1_Missense_Mutation_p.S268R	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	781											0						GCTTCGGGAGCGGGAAGCCAT	0.657000													5	64					0	0	0.001168	0	0
DSG3	1830	broad.mit.edu	37	18	29056200	29056200	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr18:29056200G>A	uc002kws.2	+	16	3086	c.2977G>A	c.(2977-2979)GAT>AAT	p.D993N	DSG3_uc002kwt.2_Missense_Mutation_p.D275N	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	993	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CTGTACAGAGGATCCTTGCTC	0.468000													13	76					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	9076839	9076839	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:9076839G>A	uc002mkp.2	-	3	10811	c.10607C>T	c.(10606-10608)CCA>CTA	p.P3536L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3537	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAGATACCTGGAGTAGGAGC	0.537000													6	119					0	0	0.003080	0	0
DNMT1	1786	broad.mit.edu	37	19	10254590	10254590	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:10254590G>A	uc002mng.2	-	28	3100	c.2920C>T	c.(2920-2922)CGG>TGG	p.R974W	DNMT1_uc002mnf.2_5'UTR|DNMT1_uc010xlc.1_Missense_Mutation_p.R990W|DNMT1_uc002mnh.2_Missense_Mutation_p.R869W|DNMT1_uc010xld.1_Missense_Mutation_p.R974W	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	974	BAH 2.				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	GAGTATTTCCGGTAGTGCTCT	0.557000													4	145					0	0	0.000248	0	0
DNM2	1785	broad.mit.edu	37	19	10930743	10930743	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:10930743G>A	uc002mps.1	+	16	1923	c.1759G>A	c.(1759-1761)GCC>ACC	p.A587T	DNM2_uc010dxk.2_Intron|DNM2_uc002mpt.1_Missense_Mutation_p.A587T|DNM2_uc002mpv.1_Missense_Mutation_p.A583T|DNM2_uc002mpu.1_Missense_Mutation_p.A583T|DNM2_uc010dxl.1_Missense_Mutation_p.A587T|DNM2_uc002mpw.2_Missense_Mutation_p.A316T|uc010xlj.1_5'Flank|MIR199A1_hsa-mir-199a-1|MI0000242_5'Flank	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	587	PH.				G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			GCACGTCTTCGCCATCTTCAA	0.567000													7	50					0	0	0.001984	0	0
ZNF563	147837	broad.mit.edu	37	19	12430489	12430489	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:12430489G>A	uc002mtp.2	-	4	588	c.350C>T	c.(349-351)TCC>TTC	p.S117F	ZNF563_uc002mtq.2_Missense_Mutation_p.S117F	NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	117	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCTATTAAGGGATAAATGACC	0.418000													15	91					0	0	0.003163	0	0
EMR2	30817	broad.mit.edu	37	19	14865788	14865788	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:14865788A>G	uc002mzp.1	-	14	2024	c.1568T>C	c.(1567-1569)CTC>CCC	p.L523P	EMR2_uc010dzs.1_Intron|EMR2_uc010xnw.1_Intron|EMR2_uc002mzo.1_Missense_Mutation_p.L512P|EMR2_uc002mzq.1_Missense_Mutation_p.L463P|EMR2_uc002mzr.1_Missense_Mutation_p.L474P|EMR2_uc002mzs.1_Missense_Mutation_p.L381P|EMR2_uc002mzt.1_Missense_Mutation_p.L419P|EMR2_uc002mzu.1_Missense_Mutation_p.L430P|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_Intron	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	523	Extracellular (Potential).|GPS.				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						GTGGGCCATGAGGACGGCAAA	0.453000													3	86					0	0	0.000602	0	0
CYP4F22	126410	broad.mit.edu	37	19	15658923	15658923	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:15658923G>A	uc002nbh.3	+	11	1308	c.1141G>A	c.(1141-1143)GAT>AAT	p.D381N		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	381						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						CCCCAGGGACGATCTGACTCA	0.438000													20	90					0	0	0.003330	0	0
OR10H3	26532	broad.mit.edu	37	19	15852520	15852520	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:15852520C>T	uc010xoq.1	+	1	318	c.318C>T	c.(316-318)TTC>TTT	p.F106F		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTTCTCCTTCATGTTTGGCT	0.502000													35	188					0	0	0.003271	0	0
NWD1	284434	broad.mit.edu	37	19	16860799	16860799	+	Missense_Mutation	SNP	G	A	A	rs139108504		TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:16860799G>A	uc002neu.3	+	6	1768	c.1346G>A	c.(1345-1347)CGG>CAG	p.R449Q	NWD1_uc002net.3_Missense_Mutation_p.R314Q|NWD1_uc002nev.3_Missense_Mutation_p.R243Q			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	449	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CGCCATGCTCGGAGGGTTCCC	0.597000													17	59					0	0	0.007413	0	0
SIN3B	23309	broad.mit.edu	37	19	16974538	16974538	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:16974538C>T	uc002ney.1	+	11	1424	c.1410C>T	c.(1408-1410)TCC>TCT	p.S470S	SIN3B_uc002nez.1_Silent_p.S438S|SIN3B_uc010xpi.1_Silent_p.S28S	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	470	Interaction with SDS3 and HDAC1 (By similarity).|Interaction with NCOR1 (By similarity).				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						CTGAGGACTCCACGTTCGTCA	0.607000													10	54					0	0	0.006214	0	0
B3GNT3	10331	broad.mit.edu	37	19	17919051	17919051	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:17919051C>T	uc002nhk.1	+	2	520	c.435C>T	c.(433-435)TTC>TTT	p.F145F	B3GNT3_uc002nhl.1_Silent_p.F145F|B3GNT3_uc010ebd.1_Silent_p.F145F|B3GNT3_uc010ebe.1_Silent_p.F145F	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	145	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						GCCTCCTCTTCCTGGTGGGCA	0.662000													8	30					0	0	0.003080	0	0
PIK3R2	5296	broad.mit.edu	37	19	18273926	18273926	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:18273926G>T	uc002nia.1	+	10	1771	c.1259G>T	c.(1258-1260)CGG>CTG	p.R420L	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	420	SH2 1.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						CTGGACACACGGCTCCTCTAC	0.592000													3	17					0.004672	0.0064184	0.004672	1	0
ZNF536	9745	broad.mit.edu	37	19	30936168	30936168	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:30936168G>A	uc002nsu.1	+	2	1837	c.1699G>A	c.(1699-1701)GTG>ATG	p.V567M	ZNF536_uc010edd.1_Missense_Mutation_p.V567M	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	567					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCGGGAGTACGTGTTAGTGGG	0.532000													10	74					0	0	0.008291	0	0
KIRREL2	84063	broad.mit.edu	37	19	36349760	36349760	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:36349760C>T	uc002ocb.3	+	4	728	c.516C>T	c.(514-516)TTC>TTT	p.F172F	KIRREL2_uc002obz.3_Silent_p.F172F|KIRREL2_uc002oca.3_Silent_p.F122F|KIRREL2_uc002occ.3_Silent_p.F119F|KIRREL2_uc002ocd.3_Silent_p.F169F	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	172	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GAGCCACCTTCCATCAGGTCA	0.557000													10	52					0	0	0.000978	0	0
PRX	57716	broad.mit.edu	37	19	40901920	40901920	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:40901920G>A	uc002onr.2	-	7	2608	c.2339C>T	c.(2338-2340)CCG>CTG	p.P780L	PRX_uc002onq.2_Missense_Mutation_p.P641L|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	780	55.|55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGCACCTCCGGAGCCCTGGG	0.582000													10	98					0	0	0.001368	0	0
TEX101	83639	broad.mit.edu	37	19	43922109	43922109	+	Silent	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:43922109T>C	uc010xwo.1	+	5	666	c.471T>C	c.(469-471)TGT>TGC	p.C157C	TEX101_uc002owk.2_Silent_p.C175C	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	157				C -> Y (in Ref. 1; AAK28327).		anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				CTCTTCCCTGTCCCAATGGTA	0.468000													3	103					0	0	0.004672	0	0
ZNF230	7773	broad.mit.edu	37	19	44513269	44513269	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:44513269G>A	uc002oyb.1	+	4	427	c.176G>A	c.(175-177)AGG>AAG	p.R59K		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	59	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				CACTTCCTAAGGGAAGAAAAG	0.398000													8	40					0	0	0.004482	0	0
ZNF160	90338	broad.mit.edu	37	19	53572368	53572368	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:53572368G>A	uc010eqk.2	-	7	1835	c.1419C>T	c.(1417-1419)GTC>GTT	p.V473V	ZNF160_uc002qaq.3_Silent_p.V473V|ZNF160_uc002qar.3_Silent_p.V473V	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	473	C2H2-type 8.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		CAGTATGGATGACCTGATGGG	0.408000													13	78					0	0	0.001855	0	0
LAIR2	3904	broad.mit.edu	37	19	55019123	55019123	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:55019123T>C	uc002qgc.2	+	3	210	c.88T>C	c.(88-90)TCC>CCC	p.S30P	LAIR2_uc002qga.1_RNA|LAIR2_uc002qgb.1_RNA|LAIR2_uc002qgd.2_Missense_Mutation_p.S30P|LAIR2_uc010erl.2_Missense_Mutation_p.S30P	NM_002288	NP_002279	Q6ISS4	LAIR2_HUMAN	leukocyte-associated immunoglobulin-like	30	Ig-like C2-type.					extracellular region	receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0967)		TCCCAGACCCTCCATCTCGGC	0.483000													3	141					0	0	0.004672	0	0
NLRP13	126204	broad.mit.edu	37	19	56419221	56419221	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr19:56419221C>T	uc010ygg.1	-	7	2409	c.2384G>A	c.(2383-2385)GGA>GAA	p.G795E		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	795	LRR 2.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GACAGTCATTCCCAGCTTGTT	0.488000													9	78					0	0	0.004482	0	0
APOB	338	broad.mit.edu	37	2	21229951	21229951	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:21229951G>A	uc002red.2	-	26	9917	c.9789C>T	c.(9787-9789)TTC>TTT	p.F3263F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3263					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCTCTATGGTGAATGGAGACA	0.458000													67	240					0	0	0.003610	0	0
GTF3C2	2976	broad.mit.edu	37	2	27565723	27565723	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:27565723C>T	uc002rjv.1	-	4	902	c.539G>A	c.(538-540)GGG>GAG	p.G180E	GTF3C2_uc002rju.1_Missense_Mutation_p.G191E|GTF3C2_uc002rjw.1_Missense_Mutation_p.G180E|GTF3C2_uc010eyz.1_Missense_Mutation_p.G180E	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	180						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGTCGTTCCCCAGAAGGGGT	0.577000													10	74					0	0	0.001368	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48873824	48873824	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:48873824G>A	uc010yol.1	+	5	2639	c.2592G>A	c.(2590-2592)AGG>AGA	p.R864R	STON1-GTF2A1L_uc002rwp.1_Silent_p.R911R|GTF2A1L_uc002rws.1_Silent_p.R207R|GTF2A1L_uc010yom.1_Silent_p.R173R|GTF2A1L_uc002rwt.2_Silent_p.R207R	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	864					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAGTAGATAGGAAACACTTAG	0.413000													6	39					0	0	0.001168	0	0
NRXN1	9378	broad.mit.edu	37	2	50765512	50765512	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:50765512C>T	uc010fbq.2	-	10	3619	c.2142G>A	c.(2140-2142)AAG>AAA	p.K714K	NRXN1_uc002rxb.3_Silent_p.K346K|NRXN1_uc002rxe.3_Silent_p.K674K|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TTGCTGTTTCCTTTGAGCAGG	0.483000													74	222					0	0	0.003610	0	0
PSME4	23198	broad.mit.edu	37	2	54159155	54159155	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:54159155C>T	uc002rxp.2	-	10	1189	c.1133G>A	c.(1132-1134)TGG>TAG	p.W378*	PSME4_uc010yop.1_Nonsense_Mutation_p.W264*|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	378					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			AGGAGTTAACCAAGAGGGCTT	0.418000													5	54					0	0	0.000602	0	0
XPO1	7514	broad.mit.edu	37	2	61711117	61711117	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:61711117T>C	uc002sbj.2	-	21	3360	c.2632A>G	c.(2632-2634)ATC>GTC	p.I878V	XPO1_uc010fcl.2_Missense_Mutation_p.I874V|XPO1_uc010ypn.1_Missense_Mutation_p.I874V|XPO1_uc002sbk.2_Missense_Mutation_p.I439V|XPO1_uc002sbg.2_Missense_Mutation_p.I75V|XPO1_uc002sbh.2_Missense_Mutation_p.I525V	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	878					intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			GCCCAAATGATGGAATCCAAA	0.353000													4	66					0	0	0.000602	0	0
LRRTM4	80059	broad.mit.edu	37	2	76975989	76975989	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:76975989G>A	uc002snr.2	-	4	2020	c.1605C>T	c.(1603-1605)ATC>ATT	p.I535I	LRRTM4_uc002snq.2_Silent_p.I535I	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	535	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		GGCAGTACCCGATCACAGGCT	0.537000													4	41					0	0	0.000602	0	0
DNAH6	1768	broad.mit.edu	37	2	84784883	84784883	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:84784883C>T	uc010fgb.2	+	11	1764	c.1627C>T	c.(1627-1629)CAC>TAC	p.H543Y	DNAH6_uc002soo.2_Missense_Mutation_p.H122Y|DNAH6_uc002sop.2_Missense_Mutation_p.H122Y	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	543	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						TGCAGTTAATCACTGTCAAAA	0.289000													13	95					0	0	0.003163	0	0
DPP10	57628	broad.mit.edu	37	2	116572408	116572408	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:116572408C>T	uc002tla.1	+	20	2197	c.1740C>T	c.(1738-1740)TTC>TTT	p.F580F	DPP10_uc002tlb.1_Silent_p.F530F|DPP10_uc002tlc.1_Silent_p.F576F|DPP10_uc002tle.2_Silent_p.F584F|DPP10_uc002tlf.1_Silent_p.F573F	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	580	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CAGATAAGTTCCATATTGACT	0.413000													4	54					0	0	0.000248	0	0
SCN3A	6328	broad.mit.edu	37	2	166019265	166019265	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:166019265G>A	uc002ucx.2	-	8	1260	c.768C>T	c.(766-768)TTC>TTT	p.F256F	SCN3A_uc002ucy.2_Silent_p.F256F|SCN3A_uc002ucz.2_Silent_p.F256F|SCN3A_uc002uda.1_Silent_p.F125F|SCN3A_uc002udb.1_Silent_p.F125F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	256	Helical; Name=S5 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CGCTCAGACAGAACACAGTCA	0.478000													5	62					0	0	0.000602	0	0
CSRNP3	80034	broad.mit.edu	37	2	166533019	166533020	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:166533019_166533020CC>TT	uc002udf.2	+	6	982_983	c.606_607CC>TT	c.(604-609)CTCCGA>CTTTGA	p.R203*	CSRNP3_uc002udg.2_Nonsense_Mutation_p.R203*	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	203					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						AGCACGAACTCCGAGCCATCCG	0.525000													19	60					0	0	0.004672	0	0
SF3B1	23451	broad.mit.edu	37	2	198257122	198257122	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:198257122T>A	uc002uue.2	-	25	3868	c.3820A>T	c.(3820-3822)ATT>TTT	p.I1274F		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	1274					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TGGGAACCAATGTAGATGGAG	0.343000													3	31					0	0	0.004672	0	0
SF3B1	23451	broad.mit.edu	37	2	198267484	198267484	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:198267484G>A	uc002uue.2	-	14	1921	c.1873C>T	c.(1873-1875)CGT>TGT	p.R625C		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	625	HEAT 3.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			GTTGTGTTACGGACATACTCA	0.433000													4	35					0	0	0.000248	0	0
AOX1	316	broad.mit.edu	37	2	201488594	201488594	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:201488594T>G	uc002uvx.2	+	19	2113	c.2012T>G	c.(2011-2013)GTG>GGG	p.V671G	AOX1_uc010zhf.1_Missense_Mutation_p.V227G|AOX1_uc010fsu.2_Missense_Mutation_p.V37G	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	671					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GTGTTCTGTGTGGGTCAGCTT	0.488000													7	109					0	0	0.003080	0	0
ALPI	248	broad.mit.edu	37	2	233321104	233321104	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:233321104C>T	uc002vst.3	+	2	190	c.113C>T	c.(112-114)GCC>GTC	p.A38V	ALPI_uc002vsu.3_5'UTR	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	38					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GCAGCTGAGGCCCTGGATGCT	0.637000													16	32					0	0	0.004007	0	0
AGAP1	116987	broad.mit.edu	37	2	236957783	236957783	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:236957783C>T	uc002vvs.2	+	16	2567	c.1972C>T	c.(1972-1974)CTT>TTT	p.L658F	AGAP1_uc002vvt.2_Missense_Mutation_p.L605F	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	658	Arf-GAP.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						TGGCACCCACCTTTCCCGAGT	0.557000													4	71					0	0	0.000602	0	0
COL6A3	1293	broad.mit.edu	37	2	238280938	238280938	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:238280938G>A	uc002vwl.2	-	9	4007	c.3722C>T	c.(3721-3723)TCC>TTC	p.S1241F	COL6A3_uc002vwo.2_Missense_Mutation_p.S1035F|COL6A3_uc010znj.1_Missense_Mutation_p.S634F|COL6A3_uc002vwq.2_Missense_Mutation_p.S1035F|COL6A3_uc002vwr.2_Missense_Mutation_p.S834F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1241	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGCACTTTGGGACCCATCGAT	0.547000													11	35					0	0	0.000978	0	0
AGXT	189	broad.mit.edu	37	2	241808729	241808729	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr2:241808729G>A	uc002waa.3	+	2	429	c.308G>A	c.(307-309)GGG>GAG	p.G103E	AGXT_uc010zoi.1_Missense_Mutation_p.G103E	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	103					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	TTCCTGGTTGGGGCCAATGGC	0.642000													5	81					0	0	0.001168	0	0
PAK7	57144	broad.mit.edu	37	20	9525129	9525129	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr20:9525129C>T	uc002wnl.2	-	9	2301	c.1756G>A	c.(1756-1758)GAT>AAT	p.D586N	PAK7_uc002wnk.2_Missense_Mutation_p.D586N|PAK7_uc002wnj.2_Missense_Mutation_p.D586N|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	586	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			AAACCAAAATCAGACAACTTT	0.398000													7	46					0	0	0.001984	0	0
PAK7	57144	broad.mit.edu	37	20	9624918	9624918	+	Missense_Mutation	SNP	C	T	T	rs34412917		TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr20:9624918C>T	uc002wnl.2	-	4	604	c.59G>A	c.(58-60)AGG>AAG	p.R20K	PAK7_uc002wnk.2_Missense_Mutation_p.R20K|PAK7_uc002wnj.2_Missense_Mutation_p.R20K|PAK7_uc010gby.1_Missense_Mutation_p.R20K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	20	CRIB.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			AGTATGAACCCTGTGTTCAAA	0.468000													8	40					0	0	0.006214	0	0
GGTLC1	92086	broad.mit.edu	37	20	23966723	23966723	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr20:23966723G>A	uc002wts.2	-	3	427	c.294C>T	c.(292-294)TTC>TTT	p.F98F	GGTLC1_uc002wtu.2_Silent_p.F98F	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	98							gamma-glutamyltransferase activity			ovary(1)	1						CTGGCTGGATGAAATTGGCAG	0.612000													16	70					0	0	0.004007	0	0
EDEM2	55741	broad.mit.edu	37	20	33719456	33719456	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr20:33719456G>A	uc002xbo.2	-	7	933	c.833C>T	c.(832-834)GCC>GTC	p.A278V	EDEM2_uc010zuv.1_Missense_Mutation_p.A237V|EDEM2_uc010zus.1_Missense_Mutation_p.A57V|EDEM2_uc002xbq.2_Missense_Mutation_p.A241V|EDEM2_uc010zut.1_Missense_Mutation_p.A237V|EDEM2_uc002xbp.2_Missense_Mutation_p.A126V|EDEM2_uc002xbn.2_Missense_Mutation_p.A126V|EDEM2_uc002xbr.2_Intron|EDEM2_uc010zuu.1_Missense_Mutation_p.A2V	NM_018217	NP_060687	Q9BV94	EDEM2_HUMAN	ER degradation enhancer, mannosidase alpha-like	278					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00936)			TAGGAACATGGCCATGAGCTT	0.438000													54	161					0	0	0.003610	0	0
GDF5	8200	broad.mit.edu	37	20	34025293	34025293	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr20:34025293G>A	uc002xck.1	-	1	735	c.416C>T	c.(415-417)TCT>TTT	p.S139F	GDF5_uc010gfc.1_Missense_Mutation_p.S139F|GDF5_uc010zvc.1_Missense_Mutation_p.S139F	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	139					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			GCTGGGGACAGATCCTGCTTT	0.652000													7	110					0	0	0.003080	0	0
SYCP2	10388	broad.mit.edu	37	20	58470514	58470514	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr20:58470514T>C	uc002yaz.2	-	19	1782	c.1643A>G	c.(1642-1644)CAT>CGT	p.H548R		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	548					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			ATCTCTTCTATGTCTTCCTTC	0.323000													3	37					0	0	0.004672	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19744601	19744601	+	Silent	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr21:19744601A>G	uc002ykw.2	-	6	604	c.573T>C	c.(571-573)TGT>TGC	p.C191C		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	191	Extracellular (Potential).|LDL-receptor class A 1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GAGCATCAGTACAAGGACTTG	0.328000													5	28					0	0	0.001168	0	0
JAM2	58494	broad.mit.edu	37	21	27071113	27071113	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr21:27071113C>T	uc002ylp.1	+	5	1064	c.519C>T	c.(517-519)ATC>ATT	p.I173I	JAM2_uc011ace.1_Silent_p.I173I|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Silent_p.I137I|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Silent_p.I173I|JAM2_uc010gli.1_Silent_p.I173I	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	173	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						AGGATGGCATCCGTTTGCTAG	0.438000													11	34					0	0	0.001368	0	0
CYYR1	116159	broad.mit.edu	37	21	27840924	27840924	+	Missense_Mutation	SNP	C	T	T	rs140249086	by1000genomes	TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr21:27840924C>T	uc002ymd.2	-	4	683	c.361G>A	c.(361-363)GAG>AAG	p.E121K	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Missense_Mutation_p.E122K	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	121	Cytoplasmic (Potential).					integral to membrane					0						TATTCCATCTCGTGGTCGTGA	0.522000													18	36					0	0	0.001523	0	0
KRTAP24-1	643803	broad.mit.edu	37	21	31654711	31654711	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr21:31654711A>C	uc002ynv.2	-	1	566	c.540T>G	c.(538-540)AAT>AAG	p.N180K		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	180						keratin filament	structural molecule activity				0						TGAAGCAAGGATTTTGGTAGC	0.398000													5	69					0	0	0.000602	0	0
DNMT3L	29947	broad.mit.edu	37	21	45681060	45681060	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr21:45681060G>A	uc002zeg.1	-	2	567	c.83C>T	c.(82-84)TCC>TTC	p.S28F	DNMT3L_uc002zeh.1_Missense_Mutation_p.S28F	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	28					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		GGGTGAAACGGAGCTTGAGAG	0.602000													8	79					0	0	0.004482	0	0
KRTAP10-9	386676	broad.mit.edu	37	21	46047895	46047895	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr21:46047895C>T	uc002zfp.3	+	1	856	c.807C>T	c.(805-807)TCC>TCT	p.S269S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	269						keratin filament					0						CCTGTGTGTCCCTTCTCTGCC	0.706000													13	51					0	0	0.003163	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46057780	46057780	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr21:46057780C>T	uc002zfq.2	+	1	508	c.446C>T	c.(445-447)CCT>CTT	p.P149L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	149	15 X 5 AA repeats of C-C-X(3).|10.					keratin filament					0						TGCTGTGTGCCTGTCTGCTCT	0.577000													43	180					0	0	0.002522	0	0
LOC96610	96610	broad.mit.edu	37	22	22550546	22550546	+	RNA	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr22:22550546C>T	uc011aim.1	+	11		c.1040C>T								Parts of antibodies, mostly variable regions.												0						TAACCAAAGACCCTCTGGGGT	0.587000													12	39					0	0	0.001855	0	0
APOL4	80832	broad.mit.edu	37	22	36587781	36587781	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr22:36587781A>C	uc003aox.2	-	6	623	c.398T>G	c.(397-399)ATT>AGT	p.I133S	APOL4_uc003aow.2_Missense_Mutation_p.I130S|APOL4_uc010gww.2_5'UTR	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	133					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						GACCTTTTCAATCTCATTTGC	0.463000													6	43					0	0	0.001984	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657852	46657852	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr22:46657852G>A	uc003bhh.2	-	1	1368	c.1368C>T	c.(1366-1368)GCC>GCT	p.A456A		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	456	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TGTGTGCTATGGCTTTTGGTC	0.418000													7	76					0	0	0.003080	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658278	46658278	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr22:46658278C>T	uc003bhh.2	-	1	942	c.942G>A	c.(940-942)GGG>GGA	p.G314G		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	314	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TCTTGGGGTTCCCTGTGGTGA	0.522000													10	186					0	0	0.006214	0	0
SCN11A	11280	broad.mit.edu	37	3	38962691	38962691	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:38962691C>T	uc011ays.1	-	6	967	c.768G>A	c.(766-768)GTG>GTA	p.V256V		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	256	Helical; Name=S5 of repeat I; (By similarity).|I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGAGGATAATCACGTTGACCA	0.532000													27	58					0	0	0.005443	0	0
SCN11A	11280	broad.mit.edu	37	3	38991760	38991760	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:38991760C>T	uc011ays.1	-	1	293	c.94G>A	c.(94-96)GCC>ACC	p.A32T		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	32					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TTTTGGATGGCAATCCGCTTC	0.512000													42	88					0	0	0.008740	0	0
DOCK3	1795	broad.mit.edu	37	3	51370636	51370636	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:51370636C>T	uc011bds.1	+	35	3586	c.3563C>T	c.(3562-3564)TCC>TTC	p.S1188F		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1188	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ACCGGCATTTCCTTTGTGACC	0.532000													28	73					0	0	0.002445	0	0
GLYCTK	132158	broad.mit.edu	37	3	52325072	52325072	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:52325072C>T	uc003ddo.2	+	3	570	c.474C>T	c.(472-474)ATC>ATT	p.I158I	GLYCTK_uc003ddq.2_Silent_p.I158I|GLYCTK_uc003ddm.2_RNA|GLYCTK_uc003ddn.2_RNA|GLYCTK_uc003ddp.1_Silent_p.I158I|GLYCTK_uc003ddr.2_5'Flank	NM_145262	NP_660305	Q8IVS8	GLCTK_HUMAN	glycerate kinase isoform 1	158					protein phosphorylation	Golgi apparatus|mitochondrion	ATP binding|glycerate kinase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;3.56e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)|OV - Ovarian serous cystadenocarcinoma(275;0.235)		CACTGGCCATCCAGCAACTGG	0.622000													8	23					0	0	0.004482	0	0
PLCXD2	257068	broad.mit.edu	37	3	111426861	111426861	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:111426861C>T	uc003dya.2	+	2	838	c.252C>T	c.(250-252)ATC>ATT	p.I84I	PLCXD2_uc003dyb.2_Silent_p.I84I|PLCXD2_uc003dxz.2_Silent_p.I84I	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	84	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						TCGCCAGGATCTCCTTGGTGA	0.507000													5	30					0	0	0.000602	0	0
WDR52	55779	broad.mit.edu	37	3	113145025	113145025	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:113145025G>A	uc003eae.1	-	4	399	c.353C>T	c.(352-354)TCG>TTG	p.S118L		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	118										central_nervous_system(1)	1						AAAAGGCATCGAAGCAAGCTC	0.413000													11	136					0	0	0.000978	0	0
ADPRH	141	broad.mit.edu	37	3	119305195	119305195	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:119305195C>T	uc003ecs.2	+	4	660	c.362C>T	c.(361-363)CCC>CTC	p.P121L	ADPRH_uc010hqv.2_Missense_Mutation_p.P121L|ADPRH_uc011bjb.1_Missense_Mutation_p.P14L|ADPRH_uc003ect.2_Missense_Mutation_p.P121L	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	121					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		TGGAGGATTCCCTTCAACAGC	0.602000													14	92					0	0	0.003163	0	0
SEMA5B	54437	broad.mit.edu	37	3	122634365	122634365	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:122634365C>T	uc003efz.1	-	14	2214	c.1910G>A	c.(1909-1911)CGA>CAA	p.R637Q	SEMA5B_uc011bju.1_Missense_Mutation_p.R579Q|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.R637Q|SEMA5B_uc010hro.1_Missense_Mutation_p.R579Q	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	637	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		ATCACAGGATCGAGCTCGACA	0.607000													5	39					0	0	0.000602	0	0
SLC12A8	84561	broad.mit.edu	37	3	124826579	124826579	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:124826579C>T	uc003ehv.3	-	10	1562	c.1451G>A	c.(1450-1452)AGG>AAG	p.R484K	SLC12A8_uc003ehw.3_Missense_Mutation_p.R513K|SLC12A8_uc003eht.3_Missense_Mutation_p.R285K|SLC12A8_uc003ehu.3_Missense_Mutation_p.R237K|SLC12A8_uc010hry.2_Missense_Mutation_p.R237K	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	484					potassium ion transport	integral to membrane	symporter activity				0						TTCTGGGGTCCTGTTACCCTC	0.532000													12	80					0	0	0.001368	0	0
CCDC48	79825	broad.mit.edu	37	3	128758606	128758606	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:128758606C>T	uc011bkt.1	+	8	1712	c.1712C>T	c.(1711-1713)GCT>GTT	p.A571V		NM_024768	NP_079044	Q9HA90	CCD48_HUMAN	coiled-coil domain containing 48	571											0						CAAGCCTTGGCTGCCTGCCAG	0.657000													11	56					0	0	0.000978	0	0
TRH	7200	broad.mit.edu	37	3	129695631	129695631	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:129695631G>A	uc003enc.2	+	3	862	c.301G>A	c.(301-303)GAA>AAA	p.E101K		NM_007117	NP_009048	P20396	TRH_HUMAN	thyrotropin-releasing hormone	101					cell-cell signaling|hormone-mediated signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|thyrotropin-releasing hormone activity			ovary(1)	1						tgaagaagaggaagaggaaga	0.418000													5	39					0	0	0.001168	0	0
PRR23C	389152	broad.mit.edu	37	3	138763081	138763081	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:138763081G>A	uc011bmt.1	-	1	654	c.382C>T	c.(382-384)CTG>TTG	p.L128L		NM_001134657	NP_001128129	Q6ZRP0	PR23C_HUMAN	proline rich 23C	128										skin(1)	1						TGAGCGCCCAGGAAAACGTCC	0.642000													3	5					0	0	0.004672	0	0
TRIM42	287015	broad.mit.edu	37	3	140407068	140407068	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:140407068T>C	uc003eto.1	+	3	1735	c.1544T>C	c.(1543-1545)ATG>ACG	p.M515T		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	515						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						TCAGAAACAATGATTGCCAGG	0.567000													11	38					0	0	0.008291	0	0
SLC9A9	285195	broad.mit.edu	37	3	142985569	142985569	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:142985569G>T	uc003evn.2	-	16	2095	c.1913C>A	c.(1912-1914)ACT>AAT	p.T638N		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	638					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						TTGACCCAAAGTTTGCTCAAG	0.473000													5	75					3.59834e-05	5.02365e-05	0.001168	1	0
OTOL1	131149	broad.mit.edu	37	3	161214732	161214732	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:161214732C>T	uc011bpb.1	+	1	137	c.137C>T	c.(136-138)CCA>CTA	p.P46L		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	46						collagen					0						GGTCTAAAGCCATCCAGTGGC	0.443000													6	22					0	0	0.001168	0	0
IL1RAP	3556	broad.mit.edu	37	3	190282125	190282125	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr3:190282125T>G	uc003fsm.1	+	3	253	c.47T>G	c.(46-48)CTG>CGG	p.L16R	IL1RAP_uc003fsk.2_Missense_Mutation_p.L16R|IL1RAP_uc003fsl.2_Missense_Mutation_p.L16R|IL1RAP_uc010hzf.2_Intron|IL1RAP_uc010hzg.1_Missense_Mutation_p.L16R|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Missense_Mutation_p.L16R|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Missense_Mutation_p.L16R	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	16					inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		TATGGAATCCTGCAAAGTGAT	0.383000													5	32					0	0	0.000602	0	0
SLC2A9	56606	broad.mit.edu	37	4	9982236	9982236	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:9982236G>A	uc003gmc.2	-	5	722	c.661C>T	c.(661-663)CTG>TTG	p.L221L	SLC2A9_uc003gmd.2_Silent_p.L192L	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	221	Helical; Name=5; (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						AGCTCGGGCAGGCCCAGAAGC	0.557000													3	28					0	0	0.004672	0	0
GBA3	57733	broad.mit.edu	37	4	22737622	22737622	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:22737622G>A	uc003gqp.3	+	2	168	c.77G>A	c.(76-78)GGA>GAA	p.G26E	GBA3_uc010iep.2_Missense_Mutation_p.G26E|GBA3_uc011bxo.1_Missense_Mutation_p.G27E	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	26					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						GATGCAGATGGAAAAGGCCCT	0.443000													5	20					0	0	0.000602	0	0
TLR6	10333	broad.mit.edu	37	4	38829874	38829874	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:38829874T>C	uc003gtm.2	-	1	1287	c.1221A>G	c.(1219-1221)ATA>ATG	p.I407M	TLR6_uc010ifg.1_Missense_Mutation_p.I407M	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	407	Extracellular (Potential).|LRR 8.				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						TAACATCCAGTATTTCCAAAG	0.353000													3	70					0	0	0.004672	0	0
LIMCH1	22998	broad.mit.edu	37	4	41607936	41607936	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:41607936G>A	uc003gvu.3	+	6	455	c.401G>A	c.(400-402)GGA>GAA	p.G134E	LIMCH1_uc003gvt.1_5'UTR|LIMCH1_uc003gvv.3_Missense_Mutation_p.G134E|LIMCH1_uc003gvw.3_Missense_Mutation_p.G134E|LIMCH1_uc003gvx.3_Missense_Mutation_p.G134E|LIMCH1_uc003gwe.3_Missense_Mutation_p.G134E|LIMCH1_uc003gvy.3_5'UTR|LIMCH1_uc003gwa.3_5'UTR|LIMCH1_uc003gvz.3_5'UTR	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	134					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TACTGGCTGGGAAAAGCAGCA	0.428000													4	30					0	0	0.001168	0	0
KDR	3791	broad.mit.edu	37	4	55974004	55974004	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:55974004C>G	uc003has.2	-	10	1614	c.1312G>C	c.(1312-1314)GGC>CGC	p.G438R	KDR_uc003hat.1_Missense_Mutation_p.G438R|KDR_uc011bzx.1_Missense_Mutation_p.G438R	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	438	Ig-like C2-type 5.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TGAGTGGTGCCGTACTGGTAG	0.502000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			5	64					0	0	0.001984	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146414	70146414	+	Missense_Mutation	SNP	C	T	T	rs149421320		TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:70146414C>T	uc003hej.2	+	1	198	c.196C>T	c.(196-198)CCC>TCC	p.P66S	UGT2B28_uc010ihr.2_Missense_Mutation_p.P66S	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	66					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	TCTTTTTGATCCCAATGACGC	0.383000													10	79					0	0	0.006214	0	0
TTC29	83894	broad.mit.edu	37	4	147724715	147724715	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:147724715C>T	uc003ikw.3	-	11	1451	c.1224G>A	c.(1222-1224)ATG>ATA	p.M408I	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Missense_Mutation_p.M434I|TTC29_uc010ipd.1_Missense_Mutation_p.M408I	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	408							binding				0	all_hematologic(180;0.151)					CTGTAAGCATCATCTGATGAG	0.433000													3	16					0	0	0.004672	0	0
CCDC110	256309	broad.mit.edu	37	4	186381342	186381342	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:186381342A>C	uc003ixu.3	-	6	475	c.399T>G	c.(397-399)TTT>TTG	p.F133L	CCDC110_uc003ixv.3_Missense_Mutation_p.F96L|CCDC110_uc011ckt.1_Missense_Mutation_p.F133L	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	133						nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		TGGAATCCTCAAAATGATGAC	0.363000													4	44					0	0	0.000248	0	0
TRIML1	339976	broad.mit.edu	37	4	189068515	189068515	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr4:189068515A>T	uc003izm.1	+	6	1511	c.1396A>T	c.(1396-1398)AGC>TGC	p.S466C	TRIML1_uc003izn.1_Missense_Mutation_p.S190C	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	466	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CTCACTGAACAGCCACGTCTG	0.552000													7	36					0	0	0.001984	0	0
EXOC3	11336	broad.mit.edu	37	5	446415	446415	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:446415A>T	uc003jba.2	+	2	223	c.95A>T	c.(94-96)TAT>TTT	p.Y32F		NM_007277	NP_009208	O60645	EXOC3_HUMAN	Sec6 protein	43	Potential.				exocytosis|protein transport						0		Ovarian(839;0.0563)	Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			GTGGAGCAGTATCGCAGGAGA	0.612000													6	47					0	0	0.001168	0	0
DNAH5	1767	broad.mit.edu	37	5	13766229	13766229	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:13766229G>A	uc003jfd.2	-	59	9999	c.9957C>T	c.(9955-9957)ATC>ATT	p.I3319I	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3319	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGATCCGCATGATGAGGTGAG	0.532000									Kartagener_syndrome				17	115					0	0	0.004990	0	0
SPEF2	79925	broad.mit.edu	37	5	35691304	35691304	+	Silent	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:35691304T>C	uc003jjo.2	+	11	1801	c.1690T>C	c.(1690-1692)TTA>CTA	p.L564L	SPEF2_uc003jjq.3_Silent_p.L564L|SPEF2_uc003jjp.1_Silent_p.L55L	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	564					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TAAAGGATGCTTATTGGGGAA	0.398000													10	57					0	0	0.008291	0	0
DAB2	1601	broad.mit.edu	37	5	39377033	39377033	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:39377033G>A	uc003jlx.2	-	12	2387	c.1856C>T	c.(1855-1857)CCT>CTT	p.P619L	DAB2_uc003jlw.2_Missense_Mutation_p.P598L	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	619					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			TGGCTGAGGAGGAGTGACCAG	0.532000											OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	114					0	0	0.001882	0	0
ENC1	8507	broad.mit.edu	37	5	73931666	73931666	+	Silent	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:73931666A>G	uc003kdc.3	-	2	1776	c.645T>C	c.(643-645)ATT>ATC	p.I215I	ENC1_uc011css.1_Silent_p.I142I	NM_003633	NP_003624	O14682	ENC1_HUMAN	ectodermal-neural cortex (with BTB-like domain)	215					nervous system development	cytoplasm|cytoskeleton|nuclear matrix	actin binding			ovary(1)|pancreas(1)|skin(1)	3		all_lung(232;0.0154)|Lung NSC(167;0.0331)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.45e-59)		TGATCCAGTTAATTGCAGACT	0.498000													5	58					0	0	0.001168	0	0
AGGF1	55109	broad.mit.edu	37	5	76331408	76331408	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:76331408A>C	uc003ket.2	+	3	716	c.356A>C	c.(355-357)AAT>ACT	p.N119T	AGGF1_uc003kes.2_Missense_Mutation_p.N119T|AGGF1_uc003keu.1_RNA	NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	119					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		AGTCTTCCAAATAAAGTGACT	0.303000													43	233					0	0	0.003610	0	0
THBS4	7060	broad.mit.edu	37	5	79351609	79351609	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:79351609C>T	uc003kgh.2	+	4	617	c.294C>T	c.(292-294)GCC>GCT	p.A98A		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	98	TSP N-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		TGCTTCCAGCCATCCTCCGTT	0.537000													54	218					0	0	0.003610	0	0
WDR36	134430	broad.mit.edu	37	5	110428092	110428092	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:110428092A>G	uc003kpd.2	+	1	223	c.106A>G	c.(106-108)AAG>GAG	p.K36E	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	36					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		AGACACGCTGAAGGGACTGGG	0.627000													4	75					0	0	0.000248	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129040065	129040065	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:129040065G>A	uc003kvb.1	+	21	3275	c.3275G>A	c.(3274-3276)CGA>CAA	p.R1092Q	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1092	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TATGTGTGGCGAATGGGTGAC	0.453000													9	44					0	0	0.006214	0	0
TRPC7	57113	broad.mit.edu	37	5	135583221	135583221	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:135583221C>T	uc003lbn.1	-	6	1782	c.1779G>A	c.(1777-1779)ATG>ATA	p.M593I	TRPC7_uc010jef.1_Missense_Mutation_p.M530I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.M524I|TRPC7_uc010jei.1_Missense_Mutation_p.M469I|TRPC7_uc010jej.1_Missense_Mutation_p.M145I	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	594	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACATCCCAATCATGAAGGCCA	0.473000													10	55					0	0	0.008291	0	0
GFRA3	2676	broad.mit.edu	37	5	137589782	137589782	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:137589782G>A	uc003lcn.2	-	5	993	c.853C>T	c.(853-855)CAG>TAG	p.Q285*	GFRA3_uc003lco.2_Nonsense_Mutation_p.Q254*	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	285					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CATCTGGACTGCTCTGTTGCA	0.502000													8	57					0	0	0.006214	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221951	140221951	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:140221951G>A	uc003lhs.2	+	1	1045	c.1045G>A	c.(1045-1047)GAG>AAG	p.E349K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.E349K	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	349	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAACGTCCCTGAGATAGCACT	0.468000													11	82					0	0	0.006122	0	0
PCDHA10	56139	broad.mit.edu	37	5	140235641	140235641	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:140235641C>T	uc003lhx.2	+	1	8	c.8C>T	c.(7-9)TCC>TTC	p.S3F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.S3F|PCDHA10_uc011dad.1_Missense_Mutation_p.S3F	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	3					homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGATGGTTTCCAGATGTAGC	0.493000													15	103					0	0	0.003163	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730873	140730873	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:140730873C>T	uc003ljo.1	+	1	1046	c.1046C>T	c.(1045-1047)TCT>TTT	p.S349F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.S349F	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	349	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGTCCTTCTCTAACCAGATT	0.438000													7	12					0	0	0.001984	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769554	140769554	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:140769554C>T	uc003lkc.1	+	1	2103	c.2103C>T	c.(2101-2103)TTC>TTT	p.F701F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.F701F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	701	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTGCTCTTCCTCGTGGCCA	0.602000													9	159					0	0	0.004482	0	0
ITK	3702	broad.mit.edu	37	5	156665145	156665145	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:156665145G>A	uc003lwo.1	+	9	877	c.795G>A	c.(793-795)AGG>AGA	p.R265R		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	265	SH2.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding	p.R265K(1)		lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCATGGTAAGGGATTCCAGGA	0.468000			T	SYK	peripheral T-cell lymphoma								52	345					0	0	0.003610	0	0
GABRA1	2554	broad.mit.edu	37	5	161300147	161300147	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:161300147C>T	uc010jiw.2	+	6	748	c.280C>T	c.(280-282)CGT>TGT	p.R94C	GABRA1_uc010jix.2_Missense_Mutation_p.R94C|GABRA1_uc010jiy.2_Missense_Mutation_p.R94C|GABRA1_uc003lyx.3_Missense_Mutation_p.R94C|GABRA1_uc010jiz.2_Missense_Mutation_p.R94C|GABRA1_uc010jja.2_Missense_Mutation_p.R94C|GABRA1_uc010jjb.2_Missense_Mutation_p.R94C	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	94	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity	p.R94H(1)		ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	TGTATTTTTCCGTCAAAGCTG	0.373000													9	64					0	0	0.006214	0	0
RREB1	6239	broad.mit.edu	37	6	7230144	7230144	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:7230144C>T	uc003mxc.2	+	10	2202	c.1812C>T	c.(1810-1812)GCC>GCT	p.A604A	RREB1_uc003mxb.2_Silent_p.A604A|RREB1_uc010jnx.2_Silent_p.A604A	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	604					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				TCATCGAGGCCCTGCTGCCGC	0.677000													10	20					0	0	0.006214	0	0
HIST1H4B	8366	broad.mit.edu	37	6	26027399	26027399	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:26027399G>T	uc003nfr.2	-	1	82	c.82C>A	c.(82-84)CAA>AAA	p.Q28K		NM_003544	NP_003535	P62805	H4_HUMAN	histone cluster 1, H4b	28					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						GTGATGCCTTGGATGTTATCC	0.542000													9	57					3.09899e-07	4.36906e-07	0.004482	1	0
CDSN	1041	broad.mit.edu	37	6	31084379	31084379	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:31084379G>A	uc003nsm.1	-	2	1040	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	338	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						AGCTGCAAAGGAAGGGACCCC	0.552000													11	43					0	0	0.002450	0	0
NEU1	4758	broad.mit.edu	37	6	31827574	31827574	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:31827574G>A	uc003nxq.3	-	6	1326	c.1170C>T	c.(1168-1170)TAC>TAT	p.Y390Y	NEU1_uc010jtg.2_RNA|NEU1_uc003nxr.3_RNA|NEU1_uc010jth.2_Silent_p.Y221Y|NEU1_uc003nxs.3_3'UTR	NM_000434	NP_000425	Q99519	NEUR1_HUMAN	neuraminidase precursor	390						cytoplasmic membrane-bounded vesicle|lysosomal lumen|lysosomal membrane|plasma membrane	exo-alpha-sialidase activity|protein binding			ovary(1)	1					Oseltamivir(DB00198)|Zanamivir(DB00558)	CATACAGGACGTAGAGCTGGG	0.587000													41	633					0	0	0.002222	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188538	32188538	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:32188538C>T	uc003obb.2	-	5	1056	c.917G>A	c.(916-918)TGG>TAG	p.W306*	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Nonsense_Mutation_p.W306*	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	306	EGF-like 7; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CTCACCTGTCCAGGTTTCTGG	0.587000													68	169					0	0	0.003610	0	0
ETV7	51513	broad.mit.edu	37	6	36336840	36336840	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:36336840G>A	uc003omb.2	-	6	822	c.673C>T	c.(673-675)CTG>TTG	p.L225L	ETV7_uc003olz.1_Silent_p.L225L|ETV7_uc003oma.1_Silent_p.L170L|ETV7_uc010jwg.2_RNA|ETV7_uc003omc.2_Silent_p.L170L|ETV7_uc010jwj.2_Silent_p.L166L|ETV7_uc010jwh.2_Silent_p.L144L|ETV7_uc010jwi.2_Silent_p.L148L|ETV7_uc011dtl.1_Silent_p.L74L	NM_016135	NP_057219	Q9Y603	ETV7_HUMAN	ets variant 7	225	ETS.				organ morphogenesis|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TCCCACAGCAGGCGGCAGTCT	0.547000													4	47					0	0	0.000248	0	0
SFRS3	6428	broad.mit.edu	37	6	36564672	36564672	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:36564672C>T	uc003omj.2	+	2	304	c.133C>T	c.(133-135)CCA>TCA	p.P45S	SFRS3_uc003omk.2_RNA|SFRS3_uc011dtp.1_Missense_Mutation_p.P45S	NM_003017	NP_003008	P84103	SRSF3_HUMAN	splicing factor, arginine/serine-rich 3	45	RRM.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						TGCTAGAAACCCACCCGGCTT	0.458000			T	BCL6	follicular lymphoma								11	93					0	0	0.008291	0	0
TTBK1	84630	broad.mit.edu	37	6	43250473	43250473	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:43250473C>T	uc003ouq.1	+	14	2274	c.1995C>T	c.(1993-1995)TCC>TCT	p.S665S		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	665						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			AGGTGTTCTCCGTGGCGCCCC	0.587000													18	114					0	0	0.007413	0	0
ZNF318	24149	broad.mit.edu	37	6	43306850	43306850	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:43306850T>G	uc003oux.2	-	10	4964	c.4886A>C	c.(4885-4887)CAA>CCA	p.Q1629P	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1629					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			ACCCTCATCTTGATGCAACTC	0.458000													47	107					0	0	0.003610	0	0
HCRTR2	3062	broad.mit.edu	37	6	55145222	55145222	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:55145222T>G	uc003pcl.2	+	6	1400	c.1085T>G	c.(1084-1086)ATT>AGT	p.I362S	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	362	Helical; Name=7; (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCGAATCCAATTATTTATAAT	0.318000													6	45					0	0	0.001168	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55378900	55378900	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:55378900C>T	uc003pcn.2	-	6	737	c.578G>A	c.(577-579)GGA>GAA	p.G193E	HMGCLL1_uc003pco.2_Missense_Mutation_p.G163E|HMGCLL1_uc010jzx.2_Missense_Mutation_p.G64E|HMGCLL1_uc011dxc.1_Missense_Mutation_p.G131E|HMGCLL1_uc011dxd.1_Intron|HMGCLL1_uc011dxe.1_Intron|HMGCLL1_uc003pcp.2_Missense_Mutation_p.G131E	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	193							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			CTCAAATTTTCCCATACTTTC	0.368000													6	20					0	0	0.003080	0	0
RIMS1	22999	broad.mit.edu	37	6	72806812	72806812	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:72806812C>T	uc003pga.2	+	3	483	c.406C>T	c.(406-408)CGC>TGC	p.R136C		NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	136	RabBD.|FYVE-type.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CTCCTATTGTCGCACTAAGTT	0.512000													18	48					0	0	0.004990	0	0
MCHR2	84539	broad.mit.edu	37	6	100390835	100390835	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:100390835C>T	uc003pqh.1	-	4	892	c.577G>A	c.(577-579)GAT>AAT	p.D193N	MCHR2_uc003pqi.1_Missense_Mutation_p.D193N	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	193	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		CAGAGTACATCGTCAGGGGAT	0.408000													13	31					0	0	0.003163	0	0
HS3ST5	222537	broad.mit.edu	37	6	114378655	114378655	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:114378655C>T	uc003pwg.3	-	2	839	c.807G>A	c.(805-807)GTG>GTA	p.V269V	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Silent_p.V269V	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	269	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		GGAACTTCTCCACGAGCTGAA	0.403000													11	41					0	0	0.008291	0	0
ROS1	6098	broad.mit.edu	37	6	117609820	117609820	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:117609820G>A	uc003pxp.1	-	43	7078	c.6879C>T	c.(6877-6879)GGC>GGT	p.G2293G	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2293	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ATTCCTGGGAGCCTAGAGGAC	0.448000			T	GOPC|ROS1	glioblastoma|NSCLC								16	56					0	0	0.006122	0	0
THEMIS	387357	broad.mit.edu	37	6	128135008	128135008	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:128135008C>T	uc003qbi.2	-	5	1097	c.778G>A	c.(778-780)GAT>AAT	p.D260N	THEMIS_uc010kfa.2_Missense_Mutation_p.D163N|THEMIS_uc011ebt.1_Missense_Mutation_p.D260N|THEMIS_uc010kfb.2_Missense_Mutation_p.D225N	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	260	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CAGTTAGCATCGTAAGAATCA	0.363000													11	78					0	0	0.001855	0	0
LAMA2	3908	broad.mit.edu	37	6	129571261	129571261	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:129571261C>T	uc003qbn.2	+	13	1892	c.1787C>T	c.(1786-1788)CCA>CTA	p.P596L	LAMA2_uc003qbo.2_Missense_Mutation_p.P596L	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	596	Laminin IV type A 1.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TTGTAGCTCCCAGCAGTAGGA	0.363000													5	47					0	0	0.001168	0	0
PEX7	5191	broad.mit.edu	37	6	137193340	137193340	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:137193340C>T	uc003qhd.2	+	8	854	c.752C>T	c.(751-753)TCA>TTA	p.S251L	PEX7_uc010kgx.2_RNA	NM_000288	NP_000279	O00628	PEX7_HUMAN	peroxisomal biogenesis factor 7	251	WD 5.				ether lipid biosynthetic process|protein import into peroxisome matrix	peroxisome	peroxisome matrix targeting signal-2 binding				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000257)|OV - Ovarian serous cystadenocarcinoma(155;0.00492)		TTGTAGTTTTCACCATTTCAT	0.303000													10	92					0	0	0.000978	0	0
KIAA1244	57221	broad.mit.edu	37	6	138634957	138634957	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:138634957C>T	uc003qhu.2	+	26	4226	c.4226C>T	c.(4225-4227)CCC>CTC	p.P1409L		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1409					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TACAAAATGCCCTTGAAGCCA	0.388000													4	25					0	0	0.001168	0	0
PRKAR1B	5575	broad.mit.edu	37	7	590187	590187	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:590187C>T	uc003siu.1	-	12	1132	c.1026G>A	c.(1024-1026)CGG>CGA	p.R342R	PRKAR1B_uc003siv.2_Silent_p.R342R|PRKAR1B_uc003siw.1_Silent_p.R342R	NM_002735	NP_002726	P31321	KAP1_HUMAN	protein kinase, cAMP-dependent, regulatory, type	342	cAMP 2.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of insulin secretion|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|Epithelial(4;5.75e-19)|OV - Ovarian serous cystadenocarcinoma(56;2.01e-18)|all cancers(6;3.96e-16)|BRCA - Breast invasive adenocarcinoma(126;0.152)		TGAGGGGCCCCCGGGCCACGA	0.662000													3	13					0	0	0.004672	0	0
EGFR	1956	broad.mit.edu	37	7	55214414	55214414	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:55214414C>T	uc003tqk.2	+	4	786	c.540C>T	c.(538-540)TTC>TTT	p.F180F	EGFR_uc003tqh.2_Silent_p.F180F|EGFR_uc003tqi.2_Silent_p.F180F|EGFR_uc003tqj.2_Silent_p.F180F|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Silent_p.F127F	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	180	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CGATGGACTTCCAGAACCACC	0.577000		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			4	28					0	0	0.000248	0	0
PCLO	27445	broad.mit.edu	37	7	82784272	82784272	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:82784272C>T	uc003uhx.2	-	2	1974	c.1685G>A	c.(1684-1686)GGA>GAA	p.G562E	PCLO_uc003uhv.2_Missense_Mutation_p.G562E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	508	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTTCCAGATCCTGTTTGGCT	0.522000													78	356					0	0	0.003610	0	0
ADAM22	53616	broad.mit.edu	37	7	87822431	87822431	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:87822431G>C	uc003ujn.2	+	30	2656	c.2577G>C	c.(2575-2577)GAG>GAC	p.E859D	ADAM22_uc003ujm.2_Missense_Mutation_p.R852S|ADAM22_uc003ujo.2_Missense_Mutation_p.E823D	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	859	Cytoplasmic (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			AACATCTCAGGACTTTATCTC	0.403000													3	82					0	0	0.004672	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761935	92761935	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:92761935G>A	uc003umh.1	-	5	4566	c.3350C>T	c.(3349-3351)TCC>TTC	p.S1117F	SAMD9L_uc003umj.1_Missense_Mutation_p.S1117F|SAMD9L_uc003umi.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfb.1_Missense_Mutation_p.S1117F|SAMD9L_uc003umk.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfc.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfd.1_Missense_Mutation_p.S1117F|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1117										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGAAATATAGGAATTTTTAGG	0.383000													19	65					0	0	0.008871	0	0
STAG3	10734	broad.mit.edu	37	7	99786085	99786085	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:99786085C>T	uc003utx.1	+	6	598	c.443C>T	c.(442-444)ACC>ATC	p.T148I	STAG3_uc010lgs.1_5'UTR|STAG3_uc011kjk.1_Intron	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	148					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGCATTGTGACCCCTGAGATG	0.418000													37	282					0	0	0.008740	0	0
MUC17	140453	broad.mit.edu	37	7	100678986	100678986	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:100678986C>T	uc003uxp.1	+	3	4342	c.4289C>T	c.(4288-4290)TCT>TTT	p.S1430F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1430	Extracellular (Potential).|Ser-rich.|22.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGGACCACTTCTGCTGAAGCC	0.498000													32	266					0	0	0.003271	0	0
SERPINE1	5054	broad.mit.edu	37	7	100771930	100771930	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:100771930G>A	uc003uxt.2	+	2	404	c.256G>A	c.(256-258)GGA>AGA	p.G86R	SERPINE1_uc011kkj.1_Missense_Mutation_p.G71R|SERPINE1_uc003uxu.1_5'Flank	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	86					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	AGCAGCTATGGGATTCAAGAT	0.577000													5	42					0	0	0.001984	0	0
HIPK2	28996	broad.mit.edu	37	7	139416420	139416420	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:139416420G>A	uc003vvf.3	-	2	588	c.414C>T	c.(412-414)ATC>ATT	p.I138I	HIPK2_uc003vvd.3_Silent_p.I138I	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	138	Transcriptional corepression (By similarity).				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					TTGTGTTCTCGATCTCCTCGC	0.547000													11	40					0	0	0.000978	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				13	43					0	0	0.001855	0	0
OR6V1	346517	broad.mit.edu	37	7	142750017	142750017	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:142750017G>A	uc011ksv.1	+	1	580	c.580G>A	c.(580-582)GAA>AAA	p.E194K		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TCGCCTGTTGGAATTCTGGGA	0.522000													30	140					0	0	0.007291	0	0
UBE3C	9690	broad.mit.edu	37	7	156971527	156971527	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr7:156971527A>G	uc010lqs.2	+	6	914	c.602A>G	c.(601-603)TAC>TGC	p.Y201C	UBE3C_uc003wnf.2_Missense_Mutation_p.Y158C|UBE3C_uc003wng.2_Missense_Mutation_p.Y201C	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	201					protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		ATTTTGCACTACATGATTCAC	0.463000													6	46					0	0	0.003080	0	0
SLC7A2	6542	broad.mit.edu	37	8	17407830	17407830	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:17407830G>A	uc011kyc.1	+	5	888	c.719G>A	c.(718-720)GGA>GAA	p.G240E	SLC7A2_uc011kyd.1_Missense_Mutation_p.G280E|SLC7A2_uc011kye.1_Missense_Mutation_p.G280E|SLC7A2_uc011kyf.1_Missense_Mutation_p.G240E	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	240	Extracellular (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	TCTGAAAACGGAACAAGTATC	0.443000													10	18					0	0	0.008291	0	0
FGFR1	2260	broad.mit.edu	37	8	38277177	38277177	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:38277177G>A	uc003xlp.2	-	9	2100	c.1158C>T	c.(1156-1158)CTC>CTT	p.L386L	FGFR1_uc010lwf.2_5'Flank|FGFR1_uc011lbo.1_Silent_p.L384L|FGFR1_uc011lbp.1_Silent_p.L297L|FGFR1_uc011lbq.1_Silent_p.L295L|FGFR1_uc010lwk.2_Silent_p.L378L|FGFR1_uc011lbr.1_RNA|FGFR1_uc011lbs.1_Silent_p.L226L|FGFR1_uc011lbt.1_3'UTR|FGFR1_uc011lbu.1_Silent_p.L417L|FGFR1_uc011lbv.1_Silent_p.L384L|FGFR1_uc011lbw.1_Silent_p.L297L	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	386	Helical; (Potential).				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	TGCAGGAGATGAGGAAGGCCC	0.557000		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						4	45					0	0	0.000248	0	0
AP3M2	10947	broad.mit.edu	37	8	42012230	42012230	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:42012230A>T	uc003xop.2	+	3	316	c.25A>T	c.(25-27)AAC>TAC	p.N9Y	AP3M2_uc003xoo.2_Missense_Mutation_p.N9Y|AP3M2_uc010lxe.2_RNA|AP3M2_uc003xoq.1_5'UTR|AP3M2_uc003xor.1_Missense_Mutation_p.N9Y	NM_001134296	NP_001127768	P53677	AP3M2_HUMAN	adaptor-related protein complex 3, mu 2 subunit	9					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus					0	all_cancers(6;8.14e-25)|all_epithelial(6;2.41e-27)|all_lung(13;5.09e-13)|Lung NSC(13;8.38e-12)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|Colorectal(10;0.00165)|OV - Ovarian serous cystadenocarcinoma(14;0.00346)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)			TTTCTTGATCAACTCCTCTGG	0.433000													13	43					0	0	0.002450	0	0
CHD7	55636	broad.mit.edu	37	8	61743013	61743013	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:61743013C>T	uc003xue.2	+	15	4132	c.3655C>T	c.(3655-3657)CGA>TGA	p.R1219*		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1219					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GAAATATTACCGAGCCATCCT	0.398000													8	99					0	0	0.003080	0	0
PDE7A	5150	broad.mit.edu	37	8	66631584	66631584	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:66631584T>C	uc003xvq.2	-	13	1402	c.1390A>G	c.(1390-1392)ACT>GCT	p.T464A	MTFR1_uc003xvo.1_Intron|PDE7A_uc003xvp.2_Missense_Mutation_p.T438A	NM_002604	NP_002595	Q13946	PDE7A_HUMAN	phosphodiesterase 7A isoform b	464						cell fraction|cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding				0			Epithelial(68;0.0509)|BRCA - Breast invasive adenocarcinoma(89;0.111)|all cancers(69;0.168)|OV - Ovarian serous cystadenocarcinoma(28;0.238)		Dyphylline(DB00651)|Ketotifen(DB00920)	GCAGCATCAGTGTCCTCACTG	0.483000													8	43					0	0	0.004482	0	0
DECR1	1666	broad.mit.edu	37	8	91029366	91029366	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:91029366G>A	uc003yek.1	+	2	225	c.84G>A	c.(82-84)GGG>GGA	p.G28G	DECR1_uc011lgc.1_Silent_p.G19G|DECR1_uc011lgd.1_Intron	NM_001359	NP_001350	Q16698	DECR_HUMAN	2,4-dienoyl CoA reductase 1 precursor	28					fatty acid beta-oxidation|protein homotetramerization	mitochondrial matrix|nucleus|plasma membrane	2,4-dienoyl-CoA reductase (NADPH) activity|NADPH binding|oxidoreductase activity, acting on NADH or NADPH				0			BRCA - Breast invasive adenocarcinoma(11;0.00953)			TCAGTTATGGGACAAAAATAT	0.279000													5	35					0	0	0.000602	0	0
SNX31	169166	broad.mit.edu	37	8	101625250	101625250	+	Missense_Mutation	SNP	G	A	A	rs146603887	byFrequency	TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:101625250G>A	uc003yjr.2	-	6	647	c.496C>T	c.(496-498)CGG>TGG	p.R166W	SNX31_uc011lha.1_5'Flank|SNX31_uc011lhb.1_Missense_Mutation_p.R67W	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	166					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			TTGCCAAACCGAATGAGAAAG	0.493000													10	53					0	0	0.008291	0	0
TRPS1	7227	broad.mit.edu	37	8	116427011	116427011	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:116427011T>A	uc003ynz.2	-	6	3545	c.3086A>T	c.(3085-3087)CAC>CTC	p.H1029L	TRPS1_uc011lhy.1_Missense_Mutation_p.H1033L|TRPS1_uc003yny.2_Missense_Mutation_p.H1042L|TRPS1_uc010mcy.2_Missense_Mutation_p.H1029L	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	1029	Mediates interaction with RNF4 (By similarity).				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CATCCTTTTGTGAATATCCAG	0.448000									Langer-Giedion_syndrome				5	61					0	0	0.000602	0	0
DEPDC6	64798	broad.mit.edu	37	8	121061853	121061853	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:121061853C>T	uc003yow.3	+	9	1327	c.1140C>T	c.(1138-1140)GTC>GTT	p.V380V	DEPDC6_uc011lid.1_Silent_p.V279V	NM_022783	NP_073620	Q8TB45	DPTOR_HUMAN	DEP domain containing 6	380	PDZ.				intracellular signal transduction|negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|regulation of apoptosis	intracellular	protein binding				0	Lung NSC(37;9.35e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			GGCTCAATGTCCTGCATGTAG	0.493000													21	75					0	0	0.002299	0	0
FER1L6	654463	broad.mit.edu	37	8	125052167	125052167	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:125052167G>A	uc003yqw.2	+	20	2715	c.2509G>A	c.(2509-2511)GGC>AGC	p.G837S	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	837	Cytoplasmic (Potential).|C2 3.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CCAAGCCCGGGGCCTCATCGC	0.507000													12	79					0	0	0.001368	0	0
PTK2	5747	broad.mit.edu	37	8	141799613	141799613	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:141799613G>A	uc003yvu.2	-	14	1367	c.1137C>T	c.(1135-1137)AGC>AGT	p.S379S	PTK2_uc011ljq.1_Silent_p.S40S|PTK2_uc003yvp.2_Silent_p.S40S|PTK2_uc003yvq.2_5'UTR|PTK2_uc003yvr.2_Silent_p.S278S|PTK2_uc003yvs.2_Silent_p.S379S|PTK2_uc003yvt.2_Silent_p.S401S|PTK2_uc003yvv.2_Silent_p.S266S|PTK2_uc011ljr.1_Silent_p.S379S	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	379					axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			CTTGCTTTTCGCTGTTGGCCA	0.547000													10	159					0	0	0.006214	0	0
ZFP41	286128	broad.mit.edu	37	8	144332571	144332571	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr8:144332571C>T	uc003yxw.2	+	2	916	c.558C>T	c.(556-558)CTC>CTT	p.L186L	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	186	C2H2-type 4.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			GCTCCTGTCTCATCCGCCATC	0.632000													19	66					0	0	0.008871	0	0
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:20414340G>A	uc003zoe.2	-	5	763	c.504C>T	c.(502-504)AGC>AGT	p.S168S	MLLT3_uc011lne.1_Silent_p.S136S|MLLT3_uc011lnf.1_Silent_p.S165S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.A130V	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	168	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctgctactgctgc	0.144000			T	MLL	ALL								4	25					0	0	0.000248	0	0
ELAVL2	1993	broad.mit.edu	37	9	23692808	23692808	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:23692808C>T	uc003zpu.2	-	7	1102	c.827G>A	c.(826-828)TGG>TAG	p.W276*	ELAVL2_uc003zps.2_Nonsense_Mutation_p.W263*|ELAVL2_uc003zpt.2_Nonsense_Mutation_p.W263*|ELAVL2_uc003zpv.2_Nonsense_Mutation_p.W276*|ELAVL2_uc003zpw.2_Nonsense_Mutation_p.W263*	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	276	RRM 3.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		AAATATACACCACCCTGTTCC	0.468000													7	23					0	0	0.001984	0	0
TAF1L	138474	broad.mit.edu	37	9	32635331	32635331	+	Missense_Mutation	SNP	T	G	G	rs150858533		TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:32635331T>G	uc003zrg.1	-	1	337	c.247A>C	c.(247-249)AAT>CAT	p.N83H	uc003zrh.1_Intron	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	83					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AATTCTTCATTTGCCGTGAGT	0.517000													3	112					0	0	0.004672	0	0
DNAJB5	25822	broad.mit.edu	37	9	34993368	34993368	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:34993368G>A	uc003zvt.2	+	2	276	c.138G>A	c.(136-138)AAG>AAA	p.K46K	DNAJB5_uc003zvs.2_Silent_p.K80K|DNAJB5_uc011los.1_Silent_p.K118K	NM_012266	NP_036398	O75953	DNJB5_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 5	46	J.				protein folding|response to unfolded protein		heat shock protein binding|unfolded protein binding				0			LUSC - Lung squamous cell carcinoma(32;0.00575)			AGAAGTTTAAGGAGATTGCAG	0.527000													18	134					0	0	0.004990	0	0
SMC5	23137	broad.mit.edu	37	9	72938433	72938433	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:72938433G>A	uc004ahr.2	+	16	2302	c.2185G>A	c.(2185-2187)GAA>AAA	p.E729K		NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	729	Potential.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						TTGCAATCTTGAAGAGGAAGA	0.318000													11	57					0	0	0.008291	0	0
OR13C3	138803	broad.mit.edu	37	9	107298706	107298706	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:107298706T>G	uc004bcb.1	-	1	389	c.389A>C	c.(388-390)CAG>CCG	p.Q130P		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	130	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.Q130K(1)		pancreas(1)	1						AAAGAACATCTGCACTGCACA	0.448000													3	69					0	0	0.004672	0	0
OR13C5	138799	broad.mit.edu	37	9	107361332	107361332	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:107361332G>A	uc011lvp.1	-	1	363	c.363C>T	c.(361-363)GAC>GAT	p.D121D		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CCACATAGCGGTCAAAGGCCA	0.517000													14	74					0	0	0.004007	0	0
COL27A1	85301	broad.mit.edu	37	9	116967419	116967419	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:116967419G>A	uc011lxl.1	+	8	2162	c.2162G>A	c.(2161-2163)GGA>GAA	p.G721E	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Intron	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	721	Collagen-like 2.|Pro-rich.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GGGCACCCCGGAGAACAGGTG	0.647000													6	33					0	0	0.001984	0	0
TLR4	7099	broad.mit.edu	37	9	120475753	120475753	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:120475753C>T	uc004bjz.2	+	3	1638	c.1347C>T	c.(1345-1347)CTC>CTT	p.L449L	TLR4_uc004bka.2_Silent_p.L409L|TLR4_uc004bkb.2_Silent_p.L249L	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	449	LRR 14.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TCAGAAACCTCATTTACCTTG	0.393000													13	38					0	0	0.001855	0	0
CEL	1056	broad.mit.edu	37	9	135940463	135940463	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr9:135940463G>A	uc010naa.1	+	4	402	c.386G>A	c.(385-387)GGA>GAA	p.G129E		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	126					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		TGGATCTATGGAGGCGCCTTC	0.647000													53	284					0	0	0.003610	0	0
FRMPD4	9758	broad.mit.edu	37	X	12735174	12735174	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:12735174G>A	uc004cuz.1	+	15	3102	c.2596G>A	c.(2596-2598)GAT>AAT	p.D866N	FRMPD4_uc011mij.1_Missense_Mutation_p.D858N	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	866					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GAAGGGACTGGATAATGCCGT	0.527000													4	66					0	0	0.001168	0	0
RAI2	10742	broad.mit.edu	37	X	17819691	17819691	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:17819691G>A	uc004cyf.2	-	3	1010	c.440C>T	c.(439-441)TCC>TTC	p.S147F	RAI2_uc004cyg.2_Missense_Mutation_p.S147F|RAI2_uc010nfa.2_Missense_Mutation_p.S147F|RAI2_uc004cyh.3_Missense_Mutation_p.S147F|RAI2_uc011miy.1_Missense_Mutation_p.S97F	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	147					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					GGTACTGGAGGAGCATGGGGC	0.672000													10	93					0	0	0.006214	0	0
PPEF1	5475	broad.mit.edu	37	X	18775836	18775836	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:18775836C>T	uc004cyq.2	+	8	969	c.488C>T	c.(487-489)CCC>CTC	p.P163L	PPEF1_uc004cyp.2_Missense_Mutation_p.P163L|PPEF1_uc004cyr.2_Missense_Mutation_p.P163L|PPEF1_uc004cys.2_Missense_Mutation_p.P163L|PPEF1_uc011mja.1_Missense_Mutation_p.P98L|PPEF1_uc011mjb.1_Missense_Mutation_p.P107L	NM_006240	NP_006231	O14829	PPE1_HUMAN	protein phosphatase with EF hand calcium-binding	163	Catalytic.				detection of stimulus involved in sensory perception|protein dephosphorylation		calcium ion binding|iron ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity				0	Hepatocellular(33;0.183)					CAAACTTCTCCCTCCAAAGAG	0.408000													17	133					0	0	0.008871	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157909	26157909	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:26157909C>T	uc004dbq.1	+	2	994	c.807C>T	c.(805-807)TTC>TTT	p.F269F		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	269	MAGE.						protein binding			central_nervous_system(1)	1						GCTATGAATTCCTGTGGGGTC	0.502000													4	13					0	0	0.000248	0	0
FAM47A	158724	broad.mit.edu	37	X	34148281	34148281	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:34148281C>T	uc004ddg.2	-	1	2148	c.2115G>A	c.(2113-2115)TGG>TGA	p.W705*		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	705										ovary(4)|central_nervous_system(1)	5						TTAGCTTTTTCCACAACTTAG	0.433000													11	63					0	0	0.000978	0	0
PHF16	9767	broad.mit.edu	37	X	46887370	46887370	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:46887370C>T	uc004dgx.2	+	6	603	c.552C>T	c.(550-552)AAC>AAT	p.N184N	PHF16_uc004dgy.2_Silent_p.N184N	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	184					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0						AAAATATGAACCATGCTATTG	0.438000													11	56					0	0	0.008291	0	0
MIR500	574502	broad.mit.edu	37	X	49773055	49773055	+	RNA	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:49773055C>T	hsa-mir-500|MI0003184	+			c.17C>T			CLCN5_uc004dor.1_Intron|CLCN5_uc004doq.1_Intron|MIR362_hsa-mir-362|MI0000762_5'Flank|MIR501_hsa-mir-501|MI0003185_5'Flank|hsa-mir-500b|MI0015903_5'Flank																	0						CCTCTCTAATCCTTGCTACCT	0.473000													6	84					0	0	0.001984	0	0
TSPYL2	64061	broad.mit.edu	37	X	53114505	53114505	+	Splice_Site	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:53114505T>G	uc004drw.2	+	5	1370	c.1238_splice	c.e5+2	p.R413_splice	TSPYL2_uc004drv.2_3'UTR|TSPYL2_uc004drx.1_5'UTR	NM_022117	NP_071400	Q9H2G4	TSYL2_HUMAN	TSPY-like 2						cell cycle|chromatin modification|negative regulation of cell cycle|negative regulation of cell growth|negative regulation of DNA replication|nucleosome assembly|regulation of protein kinase activity|regulation of signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|rDNA binding				0						GAAGAAACGGTAATGGGAGTT	0.353000													6	36					0	0	0.001984	0	0
HUWE1	10075	broad.mit.edu	37	X	53585694	53585694	+	Silent	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:53585694C>T	uc004dsp.2	-	59	8484	c.8082G>A	c.(8080-8082)AGG>AGA	p.R2694R	HUWE1_uc004dsn.2_Silent_p.R1518R|MIR98_hsa-mir-98|MI0000100_5'Flank|uc004dsr.1_5'Flank|uc004dss.2_5'Flank|MIRLET7F2_hsa-let-7f-2|MI0000068_5'Flank	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2694					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CCAGTTGTTTCCTGCGCTTCT	0.463000													8	89					0	0	0.003080	0	0
HUWE1	10075	broad.mit.edu	37	X	53642794	53642794	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:53642794C>T	uc004dsp.2	-	22	2362	c.1960G>A	c.(1960-1962)GAT>AAT	p.D654N		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	654					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GATGCAGTATCCCCTTAAGGC	0.423000													5	17					0	0	0.000602	0	0
MED12	9968	broad.mit.edu	37	X	70348270	70348270	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:70348270G>A	uc004dyy.2	+	23	3533	c.3334G>A	c.(3334-3336)GAT>AAT	p.D1112N	MED12_uc011mpq.1_Missense_Mutation_p.D1112N|MED12_uc004dyz.2_Missense_Mutation_p.D1112N|MED12_uc004dza.2_Missense_Mutation_p.D959N|MED12_uc010nla.2_5'Flank	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1112					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					TGGTTTCAACGATCTCCTCTG	0.542000													7	141					0	0	0.003080	0	0
ATRX	546	broad.mit.edu	37	X	76938827	76938827	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:76938827C>T	uc004ecp.3	-	9	2153	c.1921G>A	c.(1921-1923)GAA>AAA	p.E641K	ATRX_uc004ecq.3_Missense_Mutation_p.E603K|ATRX_uc004eco.3_Missense_Mutation_p.E426K|ATRX_uc004ecr.2_Missense_Mutation_p.E573K|ATRX_uc010nlx.1_Missense_Mutation_p.E612K|ATRX_uc010nly.1_Missense_Mutation_p.E586K	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	641					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ACTTCATTTTCAACCAAATGC	0.408000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						10	208					0	0	0.006214	0	0
ATRX	546	broad.mit.edu	37	X	76938831	76938831	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:76938831C>G	uc004ecp.3	-	9	2149	c.1917G>C	c.(1915-1917)TTG>TTC	p.L639F	ATRX_uc004ecq.3_Missense_Mutation_p.L601F|ATRX_uc004eco.3_Missense_Mutation_p.L424F|ATRX_uc004ecr.2_Missense_Mutation_p.L571F|ATRX_uc010nlx.1_Missense_Mutation_p.L610F|ATRX_uc010nly.1_Missense_Mutation_p.L584F	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	639					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	CATTTTCAACCAAATGCTCAT	0.413000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						10	217					0	0	0.006214	0	0
ATP7A	538	broad.mit.edu	37	X	77264757	77264757	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:77264757T>G	uc004ecx.3	+	7	2026	c.1866T>G	c.(1864-1866)ATT>ATG	p.I622M	ATP7A_uc004ecw.2_Missense_Mutation_p.I622M	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	622	HMA 6.|Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						TCCATACAATTGAAGTAAGTG	0.383000													14	173					0	0	0.003163	0	0
TBX22	50945	broad.mit.edu	37	X	79286459	79286459	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:79286459C>T	uc010nmg.1	+	9	1546	c.1412C>T	c.(1411-1413)TCC>TTC	p.S471F	TBX22_uc004edi.1_Missense_Mutation_p.S351F|TBX22_uc004edj.1_Missense_Mutation_p.S471F	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	471					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						TTTCATCCTTCCTATGACTTT	0.368000													10	27					0	0	0.006214	0	0
LOC442459	442459	broad.mit.edu	37	X	98974955	98974955	+	RNA	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:98974955C>T	uc011mrd.1	-	8		c.1388G>A				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						GGGGGATGTTCCTGCGGGGTG	0.502000													4	41					0	0	0.000248	0	0
NOX1	27035	broad.mit.edu	37	X	100117282	100117282	+	Missense_Mutation	SNP	G	A	A	rs145941822	byFrequency	TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:100117282G>A	uc004egj.2	-	7	888	c.682C>T	c.(682-684)CGG>TGG	p.R228W	uc010nnf.2_Intron|NOX1_uc004egl.3_Missense_Mutation_p.R228W|NOX1_uc010nne.2_Missense_Mutation_p.R191W	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	228	Ferric oxidoreductase.|Extracellular (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						GTTTGACCCCGGACAATTCCA	0.498000													19	174					0	0	0.001523	0	0
GLRA4	441509	broad.mit.edu	37	X	102962405	102962405	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:102962405C>G	uc011mse.1	-	9	1542	c.1121G>C	c.(1120-1122)CGT>CCT	p.R374P		NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	374	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GCCATAGCCACGGAAATAGAA	0.488000													10	50					0	0	0.008291	0	0
NRK	203447	broad.mit.edu	37	X	105142616	105142616	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:105142616G>A	uc004emd.2	+	8	923	c.620G>A	c.(619-621)GGA>GAA	p.G207E	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	207	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						AGAACTAATGGAAGAAGGAAT	0.403000										HNSCC(51;0.14)			7	7					0	0	0.001984	0	0
MORC4	79710	broad.mit.edu	37	X	106198237	106198237	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:106198237G>A	uc004emu.3	-	14	1834	c.1591C>T	c.(1591-1593)CAT>TAT	p.H531Y	MORC4_uc004emp.3_Intron|MORC4_uc004emv.3_Missense_Mutation_p.H531Y|MORC4_uc004emw.3_Missense_Mutation_p.H279Y	NM_024657	NP_078933	Q8TE76	MORC4_HUMAN	zinc finger, CW type with coiled-coil domain 2	531							ATP binding|zinc ion binding			ovary(1)	1						CTAGGGCTATGAATTCCCTCA	0.398000													10	91					0	0	0.008291	0	0
DOCK11	139818	broad.mit.edu	37	X	117762225	117762225	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:117762225C>T	uc004eqp.2	+	34	3827	c.3764C>T	c.(3763-3765)ACT>ATT	p.T1255I	DOCK11_uc004eqq.2_Missense_Mutation_p.T1034I	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1255					blood coagulation	cytosol	GTP binding			ovary(3)	3						CAGGGCAACACTGGTGAAAAT	0.383000													7	86					0	0	0.001984	0	0
SLC25A5	292	broad.mit.edu	37	X	118603857	118603857	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:118603857G>A	uc004erh.3	+	2	461	c.345G>A	c.(343-345)GGG>GGA	p.G115G	LOC100303728_uc004ere.1_5'Flank|LOC100303728_uc004erg.1_5'Flank	NM_001152	NP_001143	P05141	ADT2_HUMAN	adenine nucleotide translocator 2	115	Solcar 2.|Helical; Name=3; (By similarity).				chromosome segregation|energy reserve metabolic process|interspecies interaction between organisms|regulation of insulin secretion|viral reproduction	integral to plasma membrane|mitochondrial inner membrane|mitochondrial nucleoid|MMXD complex	adenine transmembrane transporter activity|protein binding			ovary(1)	1					Clodronate(DB00720)	ACTTTGCAGGGAATCTGGCAT	0.527000													13	136					0	0	0.004007	0	0
SASH3	54440	broad.mit.edu	37	X	128914113	128914113	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:128914113C>T	uc011mun.1	+	1	222	c.40C>T	c.(40-42)CCC>TCC	p.P14S	SASH3_uc004euu.2_Missense_Mutation_p.P14S	NM_018990	NP_061863	O75995	SASH3_HUMAN	SAM and SH3 domain containing 3	14										ovary(2)|pancreas(1)	3						TGAGAAGGAGCCCACTCAGAA	0.557000													3	20					0	0	0.000602	0	0
IGSF1	3547	broad.mit.edu	37	X	130416530	130416530	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:130416530G>A	uc004ewd.2	-	7	1372	c.1134C>T	c.(1132-1134)TTC>TTT	p.F378F	IGSF1_uc004ewe.3_Silent_p.F367F|IGSF1_uc004ewf.2_Silent_p.F358F	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	378	Ig-like C2-type 4.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CATTGTTGAGGAAGAATGATG	0.458000													18	44					0	0	0.006122	0	0
IGSF1	3547	broad.mit.edu	37	X	130419329	130419329	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:130419329A>C	uc004ewd.2	-	5	729	c.491T>G	c.(490-492)TTT>TGT	p.F164C	IGSF1_uc004ewe.3_Missense_Mutation_p.F153C|IGSF1_uc004ewf.2_Missense_Mutation_p.F144C|IGSF1_uc004ewg.2_Missense_Mutation_p.F164C	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	164	Ig-like C2-type 2.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TCCCTCTTTAAACAGCATGAA	0.498000													11	116					0	0	0.008291	0	0
GPC4	2239	broad.mit.edu	37	X	132445387	132445387	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:132445387C>G	uc004exc.1	-	4	988	c.776G>C	c.(775-777)GGT>GCT	p.G259A	GPC4_uc011mvg.1_Missense_Mutation_p.G189A	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	259					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					AGTCACGAGACCCCGGCAGTG	0.473000													9	103					0	0	0.004482	0	0
GPR112	139378	broad.mit.edu	37	X	135431958	135431958	+	Silent	SNP	T	C	C			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:135431958T>C	uc004ezu.1	+	6	6384	c.6093T>C	c.(6091-6093)ACT>ACC	p.T2031T	GPR112_uc010nsb.1_Silent_p.T1826T|GPR112_uc010nsc.1_Silent_p.T1798T	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2031	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ATGTTATGACTTCCTCTACAG	0.443000													14	56					0	0	0.003163	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996272	140996272	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:140996272G>A	uc004fbt.2	+	4	3368	c.3082G>A	c.(3082-3084)GTG>ATG	p.V1028M	MAGEC1_uc010nsl.1_Missense_Mutation_p.V95M	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1028	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGGAATAGGGGTGCGTGCTGG	0.542000										HNSCC(15;0.026)			8	90					0	0	0.003080	0	0
PASD1	139135	broad.mit.edu	37	X	150773145	150773145	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:150773145G>A	uc004fev.3	+	3	388	c.56G>A	c.(55-57)AGG>AAG	p.R19K		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	19						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGCTCTCAAAGGAAATTAAAC	0.333000													3	18					0	0	0.004672	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869816	151869816	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:151869816T>G	uc004ffq.1	+	3	700	c.506T>G	c.(505-507)GTG>GGG	p.V169G	MAGEA6_uc004ffr.1_Missense_Mutation_p.V169G|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	169	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CTGATGGAAGTGGACCCCATC	0.552000													9	86					0	0	0.008291	0	0
ATP2B3	492	broad.mit.edu	37	X	152818565	152818565	+	Silent	SNP	G	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chrX:152818565G>A	uc004fht.1	+	11	2022	c.1896G>A	c.(1894-1896)AGG>AGA	p.R632R	ATP2B3_uc004fhs.1_Silent_p.R632R	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	632	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ACATGGTGAGGAAGATCATCG	0.617000													5	37					0	0	0.001168	0	0
TNPO1	3842	broad.mit.edu	37	5	72179020	72179021	+	Frame_Shift_Ins	INS	-	A	A			TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr5:72179020_72179021insA	uc003kck.3	+	11	1258_1259	c.1111_1112insA	c.(1111-1113)GAAfs	p.E371fs	TNPO1_uc011csi.1_RNA|TNPO1_uc011csj.1_Frame_Shift_Ins_p.E321fs|TNPO1_uc003kch.2_Frame_Shift_Ins_p.E363fs|TNPO1_uc003kci.3_Frame_Shift_Ins_p.E363fs|TNPO1_uc003kcg.3_Frame_Shift_Ins_p.E363fs	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	371	Asp/Glu-rich (acidic).				interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		tgatgatgatgaaattgatgat	0.317													7	30	---	---	---	---					
C6orf223	221416	broad.mit.edu	37	6	43970503	43970504	+	In_Frame_Ins	INS	-	GCG	GCG	rs72369323		TCGA-ER-A19S-06A-11D-A196-08	TCGA-ER-A19S-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b89f93f-ffb5-4102-89ae-9659e008f873	fc9585d5-2ca8-450a-aad6-b5cbb9a316a7	g.chr6:43970503_43970504insGCG	uc003own.2	+	4	387_388	c.369_370insGCG	c.(367-372)insGCG	p.132_133insA	uc003owm.1_Intron|C6orf223_uc003owo.2_In_Frame_Ins_p.112_113insA	NM_153246	NP_694978	Q8N319	CF223_HUMAN	hypothetical protein LOC221416	132_133	Ala-rich.										0	all_cancers(18;2.28e-07)|all_epithelial(2;1.62e-08)|Lung NSC(15;0.000172)|all_lung(25;0.000533)|Hepatocellular(11;0.00309)|Ovarian(13;0.0437)		all cancers(41;0.00141)|Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.217)			CGGTAGAGCGCgcggcggcggc	0.639													10	21	---	---	---	---					
