Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AURKAIP1	54998	broad.mit.edu	37	1	1309511	1309511	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:1309511G>A	uc001afb.1	-	2	477	c.367C>T	c.(367-369)CCT>TCT	p.P123S	AURKAIP1_uc001afc.2_Missense_Mutation_p.P123S|AURKAIP1_uc001afd.2_Missense_Mutation_p.P123S|AURKAIP1_uc009vkb.1_Missense_Mutation_p.P123S	NM_017900	NP_060370	Q9NWT8	AKIP_HUMAN	aurora kinase A interacting protein 1	123					negative regulation of mitosis|positive regulation of proteolysis	mitochondrion|nucleus	protein binding				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.82e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TGAATTTGAGGCGCATCCGCG	0.617													42	215					0	0	0.00195071	0	0
LOC440563	440563	broad.mit.edu	37	1	13183492	13183492	+	Silent	SNP	T	C	C	rs138712693	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:13183492T>C	uc010obg.1	-	1	476	c.381A>G	c.(379-381)CCA>CCG	p.P127P		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	127						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GTACACGTGCTGGGAAACTGT	0.522													6	133					0	0	0.00116845	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	G	G	rs10796418	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:16946407T>G	uc010ocf.1	-	3		c.491A>C			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCAATCTCCTCACTCAGCTG	0.672													4	47					0	0	0.00024832	0	0
MST1P2	11209	broad.mit.edu	37	1	16975994	16975994	+	RNA	SNP	T	C	C	rs2261801	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:16975994T>C	uc010och.1	+	11		c.2016T>C			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTCAGGCTCTCAGCTTGTCC	0.597													4	61					0	0	0.000673444	0	0
MST1P2	11209	broad.mit.edu	37	1	16976569	16976569	+	RNA	SNP	G	A	A	rs78288272	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:16976569G>A	uc010och.1	+	14		c.2290G>A			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						TACCTGCCAGGGTGACTACGG	0.567													7	33					0	0	0.000219431	0	0
OR10J1	26476	broad.mit.edu	37	1	159410466	159410466	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:159410466G>T	uc010piv.1	+	1	918	c.918G>T	c.(916-918)GAG>GAT	p.E306D	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	306	Cytoplasmic (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GAAATAAAGAGGTCAAAGATG	0.493													19	69					6.33239e-15	9.97521e-14	0.00152264	1	0
FAM5C	339479	broad.mit.edu	37	1	190195425	190195425	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:190195425A>C	uc001gse.1	-	6	980	c.748T>G	c.(748-750)TAT>GAT	p.Y250D	FAM5C_uc010pot.1_Missense_Mutation_p.Y148D	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	250						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TCCTGAAGATAGTCTGGGAGA	0.333													5	31					0	0	0.000602214	0	0
IRF6	3664	broad.mit.edu	37	1	209974733	209974733	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:209974733C>T	uc001hhq.1	-	3	289	c.26G>A	c.(25-27)CGG>CAG	p.R9Q	IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Missense_Mutation_p.R9Q	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	9	IRF tryptophan pentad repeat.				cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		GGGCTTTAGCCGGACTCTGCG	0.597										HNSCC(57;0.16)			18	145					0	0	0.00121646	0	0
TMEM63A	9725	broad.mit.edu	37	1	226055681	226055681	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:226055681A>T	uc001hpm.1	-	7	671	c.421T>A	c.(421-423)TCC>ACC	p.S141T	TMEM63A_uc010pvi.1_Missense_Mutation_p.S141T	NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	141						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					CTCTGGAAGGACAGGTAGTGG	0.537													18	68					0	0	0.000958276	0	0
JMJD1C	221037	broad.mit.edu	37	10	64967657	64967657	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr10:64967657T>C	uc001jmn.2	-	10	4072	c.3772A>G	c.(3772-3774)AAA>GAA	p.K1258E	JMJD1C_uc001jml.2_Missense_Mutation_p.K1039E|JMJD1C_uc001jmm.2_Missense_Mutation_p.K970E|JMJD1C_uc010qiq.1_Missense_Mutation_p.K1076E|JMJD1C_uc009xpi.2_Missense_Mutation_p.K1076E|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Missense_Mutation_p.K295E	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1258					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TGGGAGTCTTTTGGTTCGGGT	0.423													24	61					0	0	0.00047179	0	0
LOC653544	653544	broad.mit.edu	37	10	135491100	135491100	+	Silent	SNP	G	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr10:135491100G>T	uc010qvi.1	+	1	822	c.711G>T	c.(709-711)TCG>TCT	p.S237S		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	237						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGCTCCCTCGTGGGTCGCCT	0.761													6	55					1.58986e-06	2.45174e-05	0.000673444	1	0
LOC653544	653544	broad.mit.edu	37	10	135491107	135491107	+	Missense_Mutation	SNP	G	A	A	rs138808999	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr10:135491107G>A	uc010qvi.1	+	1	829	c.718G>A	c.(718-720)GCC>ACC	p.A240T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	240						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCGTGGGTCGCCTTCGCCCA	0.771													8	52					0	0	0.000442599	0	0
ODF3	113746	broad.mit.edu	37	11	197726	197726	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:197726G>A	uc001lob.2	+	3	569	c.275G>A	c.(274-276)CGC>CAC	p.R92H	ODF3_uc010qvk.1_Missense_Mutation_p.R92H|ODF3_uc001loc.2_Missense_Mutation_p.R92H	NM_053280	NP_444510	Q96PU9	ODF3A_HUMAN	outer dense fiber of sperm tails 3	92					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm				ovary(1)	1		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATCCTGGGGCGCTACCAAACC	0.622													31	36					0	0	0.00111076	0	0
RPS6KA4	8986	broad.mit.edu	37	11	64132815	64132815	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:64132815C>T	uc001oae.2	+	9	1032	c.949C>T	c.(949-951)CCA>TCA	p.P317S	RPS6KA4_uc001oad.2_Missense_Mutation_p.P317S|RPS6KA4_uc010rnl.1_Missense_Mutation_p.P254S|RPS6KA4_uc001oaf.2_Missense_Mutation_p.P317S|RPS6KA4_uc009ypp.2_Missense_Mutation_p.P317S	NM_003942	NP_003933	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	317	AGC-kinase C-terminal.				axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			lung(3)|ovary(1)|breast(1)	5						GATTCCAGCCCCATTCCGGCC	0.612													14	26					0	0	0.00185496	0	0
TPCN2	219931	broad.mit.edu	37	11	68846030	68846031	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:68846030_68846031GG>TT	uc001oos.2	+	14	1427_1428	c.1311_1312GG>TT	c.(1309-1314)CTGGGG>CTTTGG	p.G438W	TPCN2_uc009ysk.1_RNA|TPCN2_uc001oor.2_Missense_Mutation_p.G353W|TPCN2_uc010rqg.1_Missense_Mutation_p.G438W|TPCN2_uc001oot.2_RNA	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	438	Helical; Name=S1 of repeat II; (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TTGACTACCTGGGGAACCTCAT	0.619													13	849					0	0	6.4e-05	0	0
C2CD3	26005	broad.mit.edu	37	11	73795951	73795951	+	Silent	SNP	T	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:73795951T>C	uc001ouu.2	-	22	4202	c.3975A>G	c.(3973-3975)ACA>ACG	p.T1325T	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1325						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GCAGCTCTTTTGTTGGAACTT	0.373													17	782					0	0	0.000958276	0	0
KCTD14	65987	broad.mit.edu	37	11	77728288	77728288	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:77728288C>A	uc001oyw.3	-	2	144	c.119G>T	c.(118-120)GGG>GTG	p.G40V		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	40	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			GAACTCACCCCCGACGTTCAG	0.552													16	892					0.000308642	0.00461388	0.000308642	1	0
KCTD21	283219	broad.mit.edu	37	11	77884952	77884952	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:77884952T>G	uc001ozb.2	-	2	724	c.649A>C	c.(649-651)ATC>CTC	p.I217L		NM_001029859	NP_001025030	Q4G0X4	KCD21_HUMAN	potassium channel tetramerisation domain	217						voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.46e-24)			AAGCTGTTGATCTGCTTGTTG	0.542													12	937					0	0	0.000978159	0	0
USP35	57558	broad.mit.edu	37	11	77911752	77911753	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:77911752_77911753GG>TT	uc009yva.1	+	6	1341_1342	c.1095_1096GG>TT	c.(1093-1098)TCGGGG>TCTTGG	p.G366W	USP35_uc001oze.2_Missense_Mutation_p.G122W|USP35_uc001ozc.2_Intron|USP35_uc010rsp.1_Intron|USP35_uc001ozd.2_5'UTR|USP35_uc001ozf.2_Missense_Mutation_p.G97W	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	366					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			ACTCGAACTCGGGGACCAGCTG	0.644													13	905					0	0	6.4e-05	0	0
C12orf5	57103	broad.mit.edu	37	12	4460443	4460443	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:4460443T>C	uc001qmp.2	+	5	360	c.281T>C	c.(280-282)GTT>GCT	p.V94A		NM_020375	NP_065108	Q9NQ88	TIGAR_HUMAN	TP53-induced glycolysis and apoptosis regulator	94						intracellular	fructose-2,6-bisphosphate 2-phosphatase activity			skin(1)	1			all cancers(3;1.15e-07)|Colorectal(7;0.00165)|OV - Ovarian serous cystadenocarcinoma(31;0.00596)|COAD - Colon adenocarcinoma(12;0.0229)|GBM - Glioblastoma multiforme(3;0.0266)|STAD - Stomach adenocarcinoma(119;0.206)			AAATACGGGGTTGTAGAAGGC	0.448													25	53					0	0	0.00106085	0	0
TUBA1B	10376	broad.mit.edu	37	12	49522718	49522718	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:49522718C>T	uc001rtm.2	-	4	600	c.379G>A	c.(379-381)GAC>AAC	p.D127N	TUBA1B_uc001rto.2_Missense_Mutation_p.D92N|TUBA1B_uc001rtk.2_Missense_Mutation_p.D92N|TUBA1B_uc001rtl.2_Missense_Mutation_p.D92N|TUBA1B_uc001rtn.2_5'UTR|uc010smg.1_3'UTR	NM_006082	NP_006073	P68363	TBA1B_HUMAN	tubulin, alpha, ubiquitous	127					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding				0						GTGCACTGGTCAGCCTGTAGG	0.428													12	124					0	0	0.000219431	0	0
SCN8A	6334	broad.mit.edu	37	12	52164343	52164343	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:52164343T>A	uc001ryw.2	+	19	3699	c.3521T>A	c.(3520-3522)GTC>GAC	p.V1174D	SCN8A_uc010snl.1_Missense_Mutation_p.V1039D	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1174					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TGCTGCCAGGTCAACATCGAG	0.587													5	27					0	0	0.00116845	0	0
LRIG3	121227	broad.mit.edu	37	12	59274368	59274368	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:59274368A>C	uc001sqr.2	-	13	2042	c.1796T>G	c.(1795-1797)GTA>GGA	p.V599G	LRIG3_uc009zqh.2_Missense_Mutation_p.V539G|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	599						integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			CATACTATTTACTGTAAGCTT	0.393													3	77					0	0	6.4e-05	0	0
WSCD2	9671	broad.mit.edu	37	12	108641864	108641864	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:108641864A>G	uc001tms.2	+	9	2186	c.1442A>G	c.(1441-1443)GAG>GGG	p.E481G	WSCD2_uc001tmt.2_Missense_Mutation_p.E481G|WSCD2_uc001tmu.2_Missense_Mutation_p.E249G	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	481						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GTGCACTTTGAGGACCTGAAG	0.612													3	89					0	0	6.4e-05	0	0
CLIP1	6249	broad.mit.edu	37	12	122812709	122812709	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:122812709C>T	uc001ucg.1	-	16	3140	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	CLIP1_uc001uch.1_Missense_Mutation_p.E1001K|CLIP1_uc001uci.1_Missense_Mutation_p.E966K|CLIP1_uc001ucj.1_Missense_Mutation_p.E587K	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1012	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		ATTTTCTTTTCCTGCAGAGAC	0.493													18	153					0	0	0.000409698	0	0
DIS3	22894	broad.mit.edu	37	13	73350130	73350130	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr13:73350130C>G	uc001vix.3	-	5	1129	c.755G>C	c.(754-756)AGA>ACA	p.R252T	DIS3_uc001viy.3_Missense_Mutation_p.R222T|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	252					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		CCTGCTAGCTCTAAATGTTCC	0.328										Multiple Myeloma(4;0.011)			19	1					0	0	0.000295444	0	0
CSK	1445	broad.mit.edu	37	15	75093892	75093892	+	Silent	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr15:75093892G>A	uc010bkb.1	+	11	1026	c.843G>A	c.(841-843)AGG>AGA	p.R281R	CSK_uc002ays.2_Silent_p.R281R|CSK_uc010bkc.1_Silent_p.R90R	NM_001127190	NP_001120662	P41240	CSK_HUMAN	c-src tyrosine kinase	281	Protein kinase.				blood coagulation|epidermal growth factor receptor signaling pathway|T cell costimulation|T cell receptor signaling pathway	centrosome|cytosol|Golgi apparatus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein C-terminus binding			lung(2)|central_nervous_system(1)	3						TGCGGTCTAGGGGTCGGTCAG	0.632													13	79					0	0	0.000422831	0	0
JMJD5	79831	broad.mit.edu	37	16	27231718	27231718	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr16:27231718T>C	uc002doh.2	+	7	1180	c.998T>C	c.(997-999)ATG>ACG	p.M333T	JMJD5_uc010vcn.1_Missense_Mutation_p.M371T|JMJD5_uc010bxw.2_Intron|JMJD5_uc010bxx.2_RNA	NM_024773	NP_079049	Q8N371	KDM8_HUMAN	jumonji domain containing 5 isoform 2	333	JmjC.				G2/M transition of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|histone demethylase activity (H3-K36 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(2)|upper_aerodigestive_tract(1)	3						CCCCAGGTGATGGGGAGGAAG	0.478													5	212					0	0	0.00116845	0	0
BCMO1	53630	broad.mit.edu	37	16	81320964	81320964	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr16:81320964C>G	uc002fgn.1	+	10	1585	c.1367C>G	c.(1366-1368)GCG>GGG	p.A456G	BCMO1_uc010vnp.1_Missense_Mutation_p.A387G	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	456					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						TGCTGGCCAGCGGAACCCCTG	0.483													19	27					0	0	0.00188189	0	0
NLK	51701	broad.mit.edu	37	17	26495492	26495492	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:26495492G>C	uc010crj.2	+	6	1068	c.856G>C	c.(856-858)GCC>CCC	p.A286P	NLK_uc010cri.1_RNA	NM_016231	NP_057315	Q9UBE8	NLK_HUMAN	nemo like kinase	286	Protein kinase.				intracellular protein kinase cascade|negative regulation of Wnt receptor signaling pathway|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|serine phosphorylation of STAT3 protein|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|MAP kinase activity|SH2 domain binding|transcription factor binding|ubiquitin protein ligase binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_lung(13;0.000343)|Lung NSC(42;0.00184)			UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		TTTTGGATTGGCCAGAGTGGA	0.378													36	268					0	0	0.000814825	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	C	C	rs139671425	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:39240627T>C	uc010wfn.1	+	1	169	c.169T>C	c.(169-171)TCT>CCT	p.S57P		NM_033061	NP_149050			keratin associated protein 4-7												0						GTGCTGCCAGTCTGTGTGCTG	0.493													3	24					0	0	8.12818e-05	0	0
OR4D2	124538	broad.mit.edu	37	17	56247914	56247914	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:56247914A>G	uc010wnp.1	+	1	898	c.898A>G	c.(898-900)AGA>GGA	p.R300G		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AGCAGTGAGAAGATTAGGGAG	0.502													33	141					0	0	0.000953801	0	0
ABCA9	10350	broad.mit.edu	37	17	67008186	67008186	+	Silent	SNP	G	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:67008186G>T	uc002jhu.2	-	23	3221	c.3078C>A	c.(3076-3078)ACC>ACA	p.T1026T	ABCA9_uc010dez.2_Silent_p.T1026T	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1026	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TCCAGAAGAAGGTGTTACTTC	0.423													18	48					1.56452e-12	2.43833e-11	0.000958276	1	0
DSG2	1829	broad.mit.edu	37	18	29111149	29111149	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr18:29111149G>C	uc002kwu.3	+	9	1402	c.1214G>C	c.(1213-1215)AGC>ACC	p.S405T		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	405	Extracellular (Potential).|Cadherin 4.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			GATAGATCAAGCAAAGGCCAA	0.388													17	62					0	0	0.000422831	0	0
KIAA1632	57724	broad.mit.edu	37	18	43458346	43458346	+	Silent	SNP	G	A	A	rs150214973	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr18:43458346G>A	uc002lbm.2	-	34	6037	c.5937C>T	c.(5935-5937)AAC>AAT	p.N1979N	KIAA1632_uc010xcq.1_Silent_p.N533N|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Silent_p.N854N	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1979					autophagy						0						TTTACCTTTCGTTGTCCTCTA	0.328													18	59					0	0	0.000958276	0	0
OR1M1	125963	broad.mit.edu	37	19	9204196	9204196	+	Silent	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:9204196C>T	uc010xkj.1	+	1	276	c.276C>T	c.(274-276)ATC>ATT	p.I92I		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						GCAAGGCCATCTCTTATCCCT	0.522													7	62					0	0	0.000157383	0	0
OR1M1	125963	broad.mit.edu	37	19	9204217	9204217	+	Silent	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:9204217C>T	uc010xkj.1	+	1	297	c.297C>T	c.(295-297)ATC>ATT	p.I99I		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						GCTGCCTGATCCAGATGTACT	0.527													8	73					0	0	0.000274275	0	0
OR1M1	125963	broad.mit.edu	37	19	9204595	9204595	+	Silent	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:9204595C>T	uc010xkj.1	+	1	675	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TTGTGGCCATCATGAAGGTCC	0.562													25	133					0	0	0.00127121	0	0
OR1M1	125963	broad.mit.edu	37	19	9204670	9204670	+	Silent	SNP	C	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:9204670C>A	uc010xkj.1	+	1	750	c.750C>A	c.(748-750)CTC>CTA	p.L250L		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TGGTTGCTCTCTTCTATGGGA	0.572													31	172					3.80469e-20	6.05856e-19	0.00178596	1	0
OR1M1	125963	broad.mit.edu	37	19	9204673	9204673	+	Silent	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:9204673C>T	uc010xkj.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TTGCTCTCTTCTATGGGACCA	0.572													30	174					0	0	0.001512	0	0
POLR2I	5438	broad.mit.edu	37	19	36605705	36605705	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:36605705C>G	uc002ode.2	-	1	502	c.54G>C	c.(52-54)CAG>CAC	p.Q18H	POLR2I_uc002odf.2_RNA|TBCB_uc002odg.1_5'Flank|TBCB_uc002odh.1_5'Flank	NM_006233	NP_006224	P36954	RPB9_HUMAN	DNA directed RNA polymerase II polypeptide I	18	C4-type (Potential).				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|zinc ion binding				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CTCACCATTCCTGGCAGAAGC	0.657													37	124					0	0	0.00170553	0	0
ZNF473	25888	broad.mit.edu	37	19	50548418	50548418	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:50548418C>G	uc002prn.2	+	5	955	c.718C>G	c.(718-720)CAA>GAA	p.Q240E	ZNF473_uc002prm.2_Missense_Mutation_p.Q240E|ZNF473_uc010ybo.1_Missense_Mutation_p.Q228E	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	240					histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		CACTGTCCATCAAGAGTGTGA	0.448													20	76					0	0	0.000958276	0	0
LILRA1	11024	broad.mit.edu	37	19	55112268	55112268	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:55112268C>G	uc002qgh.1	+	10	1638	c.1456C>G	c.(1456-1458)CAG>GAG	p.Q486E		NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	486	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TCAGCACAGCCAGAGAAGCCT	0.552													9	44					0	0	0.000673444	0	0
NLRP2	55655	broad.mit.edu	37	19	55495050	55495050	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:55495050C>A	uc002qij.2	+	6	2070	c.1984C>A	c.(1984-1986)CTC>ATC	p.L662I	NLRP2_uc010yfp.1_Missense_Mutation_p.L639I|NLRP2_uc010esn.2_Missense_Mutation_p.L638I|NLRP2_uc010eso.2_Missense_Mutation_p.L659I|NLRP2_uc010esp.2_Missense_Mutation_p.L640I	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	662					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		AAAGGAGAATCTCCCGGAGAA	0.493													46	42					8.94452e-30	1.45597e-28	0.000781405	1	0
EPS8L1	54869	broad.mit.edu	37	19	55597520	55597520	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:55597520G>A	uc002qis.3	+	16	1714	c.1610G>A	c.(1609-1611)GGA>GAA	p.G537E	EPS8L1_uc010ess.1_Missense_Mutation_p.G551E|EPS8L1_uc010yfr.1_Missense_Mutation_p.G473E|EPS8L1_uc002qiu.2_Missense_Mutation_p.G410E|EPS8L1_uc002qiv.2_Missense_Mutation_p.G215E|EPS8L1_uc002qiw.2_Missense_Mutation_p.G316E	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	537	Pro-rich.|SH3.					cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		CCCTACCCCGGACCCCGGCTG	0.642													12	89					0	0	0.000308642	0	0
ZNF154	7710	broad.mit.edu	37	19	58213208	58213208	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:58213208G>A	uc010euf.2	-	3	1349	c.1109C>T	c.(1108-1110)TCC>TTC	p.S370F	ZNF776_uc002qpx.2_Intron|ZNF154_uc002qpy.2_RNA	NM_001085384	NP_001078853	Q13106	ZN154_HUMAN	zinc finger protein 154	370	C2H2-type 10.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TCGGAGACTGGAGCTGTAGGG	0.488													14	38					0	0	0.00185496	0	0
SLC8A1	6546	broad.mit.edu	37	2	40342620	40342620	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr2:40342620G>C	uc002rrx.2	-	10	2719	c.2695C>G	c.(2695-2697)CAG>GAG	p.Q899E	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.Q894E|SLC8A1_uc002rrz.2_Missense_Mutation_p.Q886E|SLC8A1_uc002rsa.2_Missense_Mutation_p.Q863E|SLC8A1_uc002rsd.3_Missense_Mutation_p.Q863E	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	899	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	ACTTTGAACTGTTCCCCATTG	0.552													12	37					0	0	0.000978159	0	0
TMEM131	23505	broad.mit.edu	37	2	98421906	98421906	+	Silent	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr2:98421906G>A	uc002syh.3	-	21	2446	c.2217C>T	c.(2215-2217)AAC>AAT	p.N739N		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	739						integral to membrane				ovary(4)|central_nervous_system(2)	6						CAAAATAAATGTTTGCAATCT	0.383													19	44					0	0	0.00074312	0	0
MBD5	55777	broad.mit.edu	37	2	149247723	149247723	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr2:149247723A>C	uc002twm.3	+	12	4811	c.3823A>C	c.(3823-3825)AGT>CGT	p.S1275R	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Missense_Mutation_p.S1275R|MBD5_uc002two.2_Missense_Mutation_p.S533R|MBD5_uc002twp.2_Missense_Mutation_p.S325R	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1275						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		AACTATGATGAGTTTTAAGGA	0.423													19	41					0	0	0.000958276	0	0
SPEG	10290	broad.mit.edu	37	2	220354563	220354563	+	Silent	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr2:220354563C>T	uc010fwg.2	+	36	8823	c.8823C>T	c.(8821-8823)TCC>TCT	p.S2941S		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2941	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TGGTCAGCTCCCCTGGGAGCA	0.662													18	34					0	0	0.00188189	0	0
FOXA2	3170	broad.mit.edu	37	20	22564860	22564860	+	Silent	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr20:22564860G>A	uc002wsn.2	-	2	229	c.39C>T	c.(37-39)TCC>TCT	p.S13S	FOXA2_uc002wsm.2_Silent_p.S19S	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	13					cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					TGCTCCAGTCGGACGGCTCGT	0.582													15	41					0	0	0.00074312	0	0
MYT1	4661	broad.mit.edu	37	20	62871203	62871203	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr20:62871203G>A	uc002yii.2	+	22	3548	c.3184G>A	c.(3184-3186)GGC>AGC	p.G1062S	MYT1_uc002yij.2_Missense_Mutation_p.G721S|MYT1_uc002yik.2_Missense_Mutation_p.G28S	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	1062					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GGAGCTGTCCGGCCTGAGCCA	0.592													12	135					0	0	0.000978159	0	0
SERPIND1	3053	broad.mit.edu	37	22	21141316	21141316	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr22:21141316C>G	uc002ztb.1	+	5	1529	c.1462C>G	c.(1462-1464)CTC>GTC	p.L488V	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Missense_Mutation_p.L516V	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	488					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	CAGCTGCCTGCTCTTCATGGG	0.572													25	31					0	0	0.00127121	0	0
QARS	5859	broad.mit.edu	37	3	49137495	49137495	+	Silent	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:49137495G>A	uc003cvx.2	-	14	1199	c.1194C>T	c.(1192-1194)GGC>GGT	p.G398G	QARS_uc011bcc.1_5'Flank|QARS_uc011bcd.1_Silent_p.G253G|QARS_uc003cvy.2_Silent_p.G253G|QARS_uc011bce.1_Silent_p.G387G	NM_005051	NP_005042	P47897	SYQ_HUMAN	glutaminyl-tRNA synthetase	398					glutaminyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|glutamine-tRNA ligase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)	L-Glutamine(DB00130)	GTGTGGCCTCGCCCTCTGAAA	0.552													36	84					0	0	0.00111076	0	0
RAD54L2	23132	broad.mit.edu	37	3	51677967	51677967	+	Silent	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:51677967C>T	uc011bdt.1	+	15	2552	c.2427C>T	c.(2425-2427)ACC>ACT	p.T809T	RAD54L2_uc003dbh.2_Silent_p.T398T|RAD54L2_uc011bdu.1_Silent_p.T503T|RAD54L2_uc003dbj.2_Silent_p.T135T	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	809	Helicase C-terminal.					nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		ACCTCACCACCTGGCTGTTCC	0.527													3	10					0	0	6.4e-05	0	0
PHC3	80012	broad.mit.edu	37	3	169831280	169831280	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:169831280G>A	uc010hws.1	-	11	2249	c.2185C>T	c.(2185-2187)CAG>TAG	p.Q729*	PHC3_uc003fgl.2_Nonsense_Mutation_p.Q741*|PHC3_uc011bpq.1_Nonsense_Mutation_p.Q688*	NM_024947	NP_079223	Q8NDX5	PHC3_HUMAN	polyhomeotic like 3	729					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			TTCACAGGCTGTTCTATTAGC	0.338													10	38					0	0	0.000673444	0	0
MUC4	4585	broad.mit.edu	37	3	195515876	195515876	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:195515876C>G	uc011bto.1	-	2	3035	c.2575G>C	c.(2575-2577)GTA>CTA	p.V859L	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.V741L	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	864	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CCTGTGCTTACTGGGATGGCA	0.572													11	27					0	0	0.000978159	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33546309	33546309	+	Splice_Site	SNP	T	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:33546309T>A	uc003jia.1	-	22	4466	c.4303_splice	c.e22-1	p.C1435_splice	ADAMTS12_uc010iuq.1_Splice_Site_p.C1350_splice	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1						proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CCTGGAGCACTGATACACAGC	0.453										HNSCC(64;0.19)			13	25					0	0	0.000308642	0	0
NDUFAF2	91942	broad.mit.edu	37	5	60369037	60369037	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:60369037G>A	uc003jsp.3	+	2	340	c.213G>A	c.(211-213)TGG>TGA	p.W71*	NDUFAF2_uc003jso.3_Intron	NM_174889	NP_777549	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	71						membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity				0		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				CAACAGAATGGGAAGGTAAGT	0.318													92	96					0	0	0.000781405	0	0
MCCC2	64087	broad.mit.edu	37	5	70888768	70888768	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:70888768A>G	uc003kbs.3	+	2	283	c.145A>G	c.(145-147)ATG>GTG	p.M49V	MCCC2_uc010iyv.1_Missense_Mutation_p.M49V|MCCC2_uc003kbt.3_RNA	NM_022132	NP_071415	Q9HCC0	MCCB_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	49					leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)	1		Lung NSC(167;0.000697)|Prostate(74;0.0107)|Ovarian(174;0.0175)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.04e-54)	Biotin(DB00121)	CTACAAGCAGATGAAAGCACT	0.343													13	73					0	0	0.000308642	0	0
DMXL1	1657	broad.mit.edu	37	5	118464914	118464914	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:118464914C>G	uc003ksd.2	+	10	1292	c.1111C>G	c.(1111-1113)CTT>GTT	p.L371V	DMXL1_uc010jcl.1_Missense_Mutation_p.L371V|DMXL1_uc003ksc.1_Missense_Mutation_p.L371V	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	371										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AGACATTCCACTTCTTCCATC	0.274													8	27					0	0	0.000442599	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501880	140501880	+	Silent	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:140501880G>A	uc003lip.1	+	1	300	c.300G>A	c.(298-300)CCG>CCA	p.P100P		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	100	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTATTGAACCGTGTGTACTGC	0.463													24	69					0	0	0.000586117	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764356	140764356	+	Silent	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:140764356G>A	uc003lka.1	+	1	1890	c.1890G>A	c.(1888-1890)CGG>CGA	p.R630R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Silent_p.R630R	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	630	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCACGGCTCGGGCCCTGCTGG	0.647													26	49					0	0	0.00127121	0	0
GRIA1	2890	broad.mit.edu	37	5	153085596	153085596	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:153085596T>G	uc003lva.3	+	11	2157	c.1792T>G	c.(1792-1794)TTC>GTC	p.F598V	GRIA1_uc003luy.3_Missense_Mutation_p.F598V|GRIA1_uc003luz.3_Missense_Mutation_p.F503V|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.F518V|GRIA1_uc011dcx.1_Missense_Mutation_p.F529V|GRIA1_uc011dcy.1_Missense_Mutation_p.F608V|GRIA1_uc011dcz.1_Missense_Mutation_p.F608V|GRIA1_uc010jia.1_Missense_Mutation_p.F578V	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	598	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CCTGGGAGCCTTCATGCAGCA	0.423													11	48					0	0	0.000673444	0	0
CCDC99	54908	broad.mit.edu	37	5	169018183	169018183	+	Silent	SNP	A	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:169018183A>G	uc003mae.3	+	3	570	c.291A>G	c.(289-291)CAA>CAG	p.Q97Q	CCDC99_uc010jjj.2_Silent_p.Q26Q|CCDC99_uc011deq.1_5'UTR|CCDC99_uc010jjk.2_5'UTR	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	97	Potential.				cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGAAGAACAACTAAGCAGAA	0.378													14	46					0	0	0.000219431	0	0
RUFY1	80230	broad.mit.edu	37	5	179036445	179036445	+	Silent	SNP	C	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:179036445C>A	uc003mka.1	+	18	2052	c.2052C>A	c.(2050-2052)TCC>TCA	p.S684S	RUFY1_uc003mkb.1_Silent_p.S576S|RUFY1_uc003mkc.1_Silent_p.S576S|RUFY1_uc003mkd.1_Silent_p.S286S	NM_025158	NP_079434	Q96T51	RUFY1_HUMAN	RUN and FYVE domain-containing 1 isoform a	684	FYVE-type.				endocytosis|protein transport	early endosome membrane	lipid binding|zinc ion binding			ovary(4)|breast(1)	5	all_cancers(89;0.00018)|all_epithelial(37;8.37e-05)|Renal(175;0.000159)|Lung NSC(126;0.00108)|all_lung(126;0.00195)	all_cancers(40;0.0322)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCTGCCCTCCTACCCCAAGC	0.647										HNSCC(44;0.11)			14	77					0.000151284	0.00228486	0.00185496	1	0
HIVEP1	3096	broad.mit.edu	37	6	12162032	12162032	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr6:12162032G>T	uc003nac.2	+	8	7027	c.6848G>T	c.(6847-6849)AGA>ATA	p.R2283I	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2283					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CGTGCTGCGAGAGATGAAAAC	0.532													17	85					2.23348e-06	3.40839e-05	0.000422831	1	0
PGK2	5232	broad.mit.edu	37	6	49754466	49754466	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr6:49754466A>T	uc003ozu.2	-	1	542	c.435T>A	c.(433-435)GAT>GAA	p.D145E		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	145					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					CTTCTATTTTATCTGGCTCAG	0.507													33	35					0	0	0.000491102	0	0
TMEM195	392636	broad.mit.edu	37	7	15430341	15430341	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr7:15430341A>T	uc003stb.1	-	8	947	c.777T>A	c.(775-777)TAT>TAA	p.Y259*		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	259					ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						GTGTTAAGCCATATACAACTT	0.279													17	151					0	0	0.000375601	0	0
WBSCR27	155368	broad.mit.edu	37	7	73254876	73254876	+	Missense_Mutation	SNP	G	A	A	rs139449951	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr7:73254876G>A	uc003tzj.2	-	4	296	c.256C>T	c.(256-258)CGG>TGG	p.R86W	RFC2_uc011kfa.1_Intron|WBSCR27_uc011kfd.1_Intron	NM_152559	NP_689772	Q8N6F8	WBS27_HUMAN	Williams-Beuren syndrome chromosome region 27	86										central_nervous_system(1)	1		Lung NSC(55;0.159)				CCTGGAGCCCGCAGCTGGGGT	0.657													19	44					0	0	0.00121646	0	0
CREB3L2	64764	broad.mit.edu	37	7	137612996	137612996	+	Silent	SNP	C	T	T	rs146953741	byFrequency	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr7:137612996C>T	uc003vtw.2	-	2	614	c.219G>A	c.(217-219)CCG>CCA	p.P73P	CREB3L2_uc003vtx.1_Silent_p.P73P|CREB3L2_uc003vty.3_Silent_p.P73P|CREB3L2_uc003vtv.2_Silent_p.P10P	NM_194071	NP_919047	Q70SY1	CR3L2_HUMAN	cAMP responsive element binding protein 3-like	73	Cytoplasmic (Potential).				chondrocyte differentiation|positive regulation of transcription, DNA-dependent|response to endoplasmic reticulum stress|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	cAMP response element binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L2(158)	soft_tissue(158)|upper_aerodigestive_tract(1)|ovary(1)	160						TGAGAGGCGCCGGGGACGTCG	0.577			T	FUS	fibromyxoid sarcoma								20	13					0	0	0.00121646	0	0
POP1	10940	broad.mit.edu	37	8	99170218	99170218	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr8:99170218G>T	uc003yij.3	+	16	2894	c.2794G>T	c.(2794-2796)GCG>TCG	p.A932S	POP1_uc011lgv.1_Missense_Mutation_p.A932S|POP1_uc003yik.2_Missense_Mutation_p.A932S	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	932					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			TGATGGCCCGGCGGGGGAAGA	0.498													48	89					4.18559e-23	6.73834e-22	0.000781405	1	0
MYC	4609	broad.mit.edu	37	8	128750836	128750836	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr8:128750836A>T	uc003ysh.1	+	3	841	c.328A>T	c.(328-330)ATG>TTG	p.M110L	MYC_uc003ysi.2_Missense_Mutation_p.M125L	NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	110					branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		GGGAGGAGACATGGTGAACCA	0.607		3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL						OREG0018982	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	118					0	0	0.00121646	0	0
FGD3	89846	broad.mit.edu	37	9	95772662	95772662	+	Silent	SNP	G	A	A			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr9:95772662G>A	uc004asw.2	+	7	1600	c.972G>A	c.(970-972)GCG>GCA	p.A324A	FGD3_uc004asx.2_Silent_p.A324A|FGD3_uc004asz.2_Silent_p.A324A|FGD3_uc004ata.2_Silent_p.A127A	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	324	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						GGAAGGATGCGGAGAGTGAGC	0.657													7	24					0	0	0.000157383	0	0
HEMGN	55363	broad.mit.edu	37	9	100693159	100693159	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr9:100693159G>C	uc004axy.2	-	3	626	c.518C>G	c.(517-519)TCT>TGT	p.S173C	HEMGN_uc004axz.2_Missense_Mutation_p.S173C	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	173					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CATTTTAGGAGAGAGGTCTTC	0.373													60	172					0	0	0.000781405	0	0
ANKS6	203286	broad.mit.edu	37	9	101552847	101552847	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr9:101552847C>G	uc004ayu.2	-	2	422	c.401G>C	c.(400-402)GGG>GCG	p.G134A	ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	134	ANK 3.									ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				GACATCAGCCCCGTGATCCAA	0.597													3	30					0	0	6.4e-05	0	0
VCX	26609	broad.mit.edu	37	X	7811760	7811760	+	Silent	SNP	C	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chrX:7811760C>T	uc004crz.2	+	3	543	c.324C>T	c.(322-324)GCC>GCT	p.A108A		NM_013452	NP_038480	Q9H320	VCX1_HUMAN	variable charge, X chromosome	108	1.|10 X 10 AA tandem repeats of L-S-Q-E-S- [EQ]-V-E-E-P.|Glu-rich.				chromatin organization|ribosome assembly|spermatogenesis	nucleolus	chromatin binding				0		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)				GTCAGGAGGCCGAGCTGGAGG	0.662													8	231					0	0	0.000673444	0	0
CCNB3	85417	broad.mit.edu	37	X	50053973	50053973	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chrX:50053973A>G	uc004dox.3	+	6	3102	c.2804A>G	c.(2803-2805)GAG>GGG	p.E935G	CCNB3_uc004doy.2_Missense_Mutation_p.E935G|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	935					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GCTCTGAATGAGAAACCCACC	0.458													18	23					0	0	0.00188189	0	0
RLIM	51132	broad.mit.edu	37	X	73811938	73811938	+	Silent	SNP	G	C	C	rs61754468	by1000genomes	TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chrX:73811938G>C	uc004ebu.2	-	5	1502	c.1212C>G	c.(1210-1212)ACC>ACG	p.T404T	RLIM_uc004ebw.2_Silent_p.T404T	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	404					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GCCTTAACATGGTCTGAATTG	0.413													4	41					0	0	0.00024832	0	0
PNMA3	29944	broad.mit.edu	37	X	152225755	152225755	+	Missense_Mutation	SNP	C	T	T	rs146193731		TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chrX:152225755C>T	uc004fhc.2	+	2	679	c.343C>T	c.(343-345)CGG>TGG	p.R115W	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	115					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ggaggagaggcggaccgtgtc	0													24	18					0	0	0.000375601	0	0
TMCO2	127391	broad.mit.edu	37	1	40713708	40713709	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:40713708_40713709delTC	uc001cfe.2	+	1	136_137	c.43_44delTC	c.(43-45)TCTfs	p.S15fs		NM_001008740	NP_001008740	Q7Z6W1	TMCO2_HUMAN	transmembrane and coiled-coil domains 2	15						integral to membrane				ovary(1)	1	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			CCTCTTAGAGTCTCTCTCTCTC	0.406													7	300	---	---	---	---					
DNAJB13	374407	broad.mit.edu	37	11	73676057	73676057	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:73676057delA	uc001ouo.2	+	4	1220	c.469delA	c.(469-471)AAAfs	p.K157fs		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	157					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					TGGCTGCACCAAAAAAATTAA	0.572											OREG0021218	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	861	---	---	---	---					
TSKU	25987	broad.mit.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	-	-			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:76506673_76506675delCTG	uc001oxt.2	+	2	185_187	c.13_15delCTG	c.(13-15)CTGdel	p.L9del		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	9						extracellular region					0	Ovarian(111;0.112)					GCCGTGGCCCCTGCTGCTGCTGC	0.616													15	398	---	---	---	---					
KCTD14	65987	broad.mit.edu	37	11	77734223	77734223	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:77734223delG	uc001oyw.3	-	1	98	c.73delC	c.(73-75)CGGfs	p.R25fs		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	25						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			CGCCTGGGCCGGGGGGACTGG	0.517													9	2737	---	---	---	---					
CLIP1	6249	broad.mit.edu	37	12	122812690	122812691	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:122812690_122812691insT	uc001ucg.1	-	16	3158_3159	c.3052_3053insA	c.(3052-3054)AGCfs	p.S1018fs	CLIP1_uc001uch.1_Frame_Shift_Ins_p.S1007fs|CLIP1_uc001uci.1_Frame_Shift_Ins_p.S972fs|CLIP1_uc001ucj.1_Frame_Shift_Ins_p.S593fs	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1018	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		CTGGTTGTGGCTTGTTTCCATT	0.505													10	178	---	---	---	---					
EFTUD2	9343	broad.mit.edu	37	17	42929088	42929089	+	Frame_Shift_Ins	INS	-	G	G			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:42929088_42929089insG	uc002ihn.2	-	27	3073_3074	c.2812_2813insC	c.(2812-2814)CGCfs	p.R938fs	EFTUD2_uc010wje.1_Frame_Shift_Ins_p.R903fs|EFTUD2_uc010wjf.1_Frame_Shift_Ins_p.R928fs	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	938						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				CTTCCTACGGCGGGTTTTGATC	0.559													5	10	---	---	---	---					
TEKT4	150483	broad.mit.edu	37	2	95539829	95539830	+	Frame_Shift_Ins	INS	-	G	G	rs35031477		TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr2:95539829_95539830insG	uc002stw.1	+	3	782_783	c.689_690insG	c.(688-690)CCGfs	p.P230fs	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	230					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						CAGGCTCATCCGTACTCCACCA	0.663													8	113	---	---	---	---					
THSD7A	221981	broad.mit.edu	37	7	11871469	11871470	+	In_Frame_Ins	INS	-	GCAGCG	GCAGCG			TCGA-ER-A19T-01A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1942d67-3c90-474e-9164-e76ddf9e335a	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr7:11871469_11871470insGCAGCG	uc003ssf.3	-	1	355_356	c.103_104insCGCTGC	c.(103-105)CTC>CCGCTGCTC	p.34_35insPL		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	34_35						integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		cagcagcaggagcagcggcagc	0.436										HNSCC(18;0.044)			10	30	---	---	---	---					
