Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16975994	16975994	+	RNA	SNP	T	C	C	rs2261801	by1000genomes	TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:16975994T>C	uc010och.1	+	11		c.2016T>C			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTCAGGCTCTCAGCTTGTCC	0.597000													3	23					0	0	0.000602214	0	0
MARCKSL1	65108	broad.mit.edu	37	1	32800473	32800473	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:32800473A>G	uc001bvd.2	-	2	513	c.313T>C	c.(313-315)TTC>CTC	p.F105L		NM_023009	NP_075385	P49006	MRP_HUMAN	MARCKS-like 1	105						plasma membrane	calmodulin binding			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				TTTCTCTTGAAGGACAGGCCG	0.582000													15	80					0	0	0.000308642	0	0
DOCK7	85440	broad.mit.edu	37	1	62958387	62958387	+	Silent	SNP	A	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:62958387A>T	uc001daq.2	-	41	5356	c.5322T>A	c.(5320-5322)GCT>GCA	p.A1774A	DOCK7_uc001dan.2_Silent_p.A1635A|DOCK7_uc001dao.2_Silent_p.A1635A|DOCK7_uc001dap.2_Silent_p.A1752A|DOCK7_uc001dam.2_Silent_p.A954A|DOCK7_uc010oov.1_Silent_p.A513A	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	1783	DHR-2.				activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						TAGAGAAGGAAGCAGCTGCTT	0.408000													38	77					0	0	0.00195071	0	0
NOTCH2	4853	broad.mit.edu	37	1	120471704	120471705	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:120471704_120471705CC>AA	uc001eik.2	-	23	4042_4043	c.3786_3787GG>TT	c.(3784-3789)GAGGGA>GATTGA	p.1262_1263EG>D*		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1262_1263	Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTGATGTCTCCCTCACAACGCT	0.569000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				12	527					0	0	6.4e-05	0	0
CRB1	23418	broad.mit.edu	37	1	197396945	197396945	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:197396945C>G	uc001gtz.2	+	7	2625	c.2490C>G	c.(2488-2490)ATC>ATG	p.I830M	CRB1_uc010poz.1_Missense_Mutation_p.I761M|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.I718M|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.I311M|CRB1_uc001gub.1_Missense_Mutation_p.I479M	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	830	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GAGATGTCATCTACATTGGTG	0.373000													9	38					0	0	0.000274275	0	0
NLRP3	114548	broad.mit.edu	37	1	247593035	247593035	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr1:247593035G>A	uc001icr.2	+	6	2443	c.2305G>A	c.(2305-2307)GGC>AGC	p.G769S	NLRP3_uc001ics.2_Missense_Mutation_p.G769S|NLRP3_uc001icu.2_Missense_Mutation_p.G769S|NLRP3_uc001icw.2_Intron|NLRP3_uc001icv.2_Intron|NLRP3_uc010pyw.1_Missense_Mutation_p.G767S	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	769					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CCAGCATCCTGGCTGTAACAT	0.498000													12	40					0	0	0.000219431	0	0
AKR1C2	1646	broad.mit.edu	37	10	5042852	5042852	+	Missense_Mutation	SNP	T	C	C	rs111249159	by1000genomes	TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr10:5042852T>C	uc010qan.1	-	3	438	c.259A>G	c.(259-261)AGC>GGC	p.S87G	AKR1E2_uc001ihl.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C2_uc009xhy.2_Missense_Mutation_p.S87G|AKR1C2_uc001ihs.2_Missense_Mutation_p.S87G|AKR1C2_uc001iht.2_Missense_Mutation_p.S87G|AKR1C2_uc010qao.1_Missense_Mutation_p.S87G	NM_205845	NP_995317	P52895	AK1C2_HUMAN	aldo-keto reductase family 1, member C2	87				S -> C (in Ref. 12; AA sequence).	digestion|prostaglandin metabolic process|steroid metabolic process	cytoplasm	androsterone dehydrogenase (A-specific) activity|bile acid binding|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0					NADH(DB00157)|Ursodeoxycholic acid(DB01586)	TGGGAATTGCTCCAAAGCTGC	0.398000													3	145					0	0	0.000602214	0	0
ANK3	288	broad.mit.edu	37	10	62023637	62023637	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr10:62023637C>T	uc001jky.2	-	6	847	c.655G>A	c.(655-657)GCC>ACC	p.A219T	ANK3_uc010qih.1_Missense_Mutation_p.A202T|ANK3_uc001jkz.3_Missense_Mutation_p.A213T|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	219	ANK 5.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGCAGCAGGGCGGCGGCTTTC	0.547000													13	27					0	0	0.000566183	0	0
IDE	3416	broad.mit.edu	37	10	94228711	94228712	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr10:94228711_94228712GG>TT	uc001kia.2	-	19	2320_2321	c.2244_2245CC>AA	c.(2242-2247)ACCCTC>ACAATC	p.L749I	IDE_uc010qnp.1_Missense_Mutation_p.L194I|IDE_uc001khz.2_Missense_Mutation_p.L194I	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	749					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGTTCAATGAGGGTGTCTTCAA	0.391000													10	278					0	0	6.4e-05	0	0
LOC653544	653544	broad.mit.edu	37	10	135491107	135491107	+	Missense_Mutation	SNP	G	A	A	rs138808999	by1000genomes	TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr10:135491107G>A	uc010qvi.1	+	1	829	c.718G>A	c.(718-720)GCC>ACC	p.A240T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	240						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCGTGGGTCGCCTTCGCCCA	0.771000													5	28					0	0	0.00116845	0	0
ODF3	113746	broad.mit.edu	37	11	197726	197726	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:197726G>A	uc001lob.2	+	3	569	c.275G>A	c.(274-276)CGC>CAC	p.R92H	ODF3_uc010qvk.1_Missense_Mutation_p.R92H|ODF3_uc001loc.2_Missense_Mutation_p.R92H	NM_053280	NP_444510	Q96PU9	ODF3A_HUMAN	outer dense fiber of sperm tails 3	92					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm				ovary(1)	1		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATCCTGGGGCGCTACCAAACC	0.622000													16	24					0	0	0.00152264	0	0
OVCH2	341277	broad.mit.edu	37	11	7721843	7721843	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:7721843C>G	uc010rbf.1	-	7	901	c.901G>C	c.(901-903)GGT>CGT	p.G301R		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		GCTTAGTTACCAGTTTGGATG	0.488000													13	18					0	0	0.00074312	0	0
FOLH1	2346	broad.mit.edu	37	11	49168493	49168493	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:49168493C>T	uc001ngy.2	-	19	2329	c.2068G>A	c.(2068-2070)GTC>ATC	p.V690I	FOLH1_uc001ngx.2_Missense_Mutation_p.M89I|FOLH1_uc001ngz.2_Missense_Mutation_p.V659I|FOLH1_uc009yly.2_Missense_Mutation_p.V675I|FOLH1_uc009ylz.2_Missense_Mutation_p.V644I|FOLH1_uc009yma.2_Missense_Mutation_p.V382I	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	690	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	GCATAGATGACATGCCTGTTG	0.408000													15	75					0	0	0.000878237	0	0
PITPNM1	9600	broad.mit.edu	37	11	67266200	67266200	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:67266200C>G	uc001olx.2	-	9	1540	c.1351G>C	c.(1351-1353)GCG>CCG	p.A451P	PITPNM1_uc001olw.2_5'Flank|PITPNM1_uc001oly.2_Missense_Mutation_p.A451P|PITPNM1_uc001olz.2_Missense_Mutation_p.A451P	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	451					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						TGCACATCCGCCTGCTTGGAG	0.667000													29	363					0	0	0.000339439	0	0
MYO7A	4647	broad.mit.edu	37	11	76867771	76867771	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:76867771G>C	uc001oyb.2	+	6	808	c.536G>C	c.(535-537)AGT>ACT	p.S179T	MYO7A_uc010rsl.1_Missense_Mutation_p.S179T|MYO7A_uc010rsm.1_Missense_Mutation_p.S168T|MYO7A_uc001oyc.2_Missense_Mutation_p.S179T	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	179	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GCAGCCATCAGTGGGCAGCAC	0.627000													13	905					0	0	0.00185496	0	0
THRSP	7069	broad.mit.edu	37	11	77774982	77774983	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:77774982_77774983CG>AT	uc001oyx.2	+	1	76_77	c.55_56CG>AT	c.(55-57)CGG>ATG	p.R19M		NM_003251	NP_003242	Q92748	THRSP_HUMAN	thyroid hormone-responsive protein	19					lipid biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus				breast(1)	1	all_cancers(14;2.23e-19)|all_epithelial(13;7.49e-22)|Breast(9;6.38e-17)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;2.15e-25)			CGTCATGGACCGGTATGCAGCC	0.619000													15	881					0	0	6.4e-05	0	0
CCDC81	60494	broad.mit.edu	37	11	86131054	86131054	+	Silent	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:86131054G>A	uc001pbx.1	+	14	2204	c.1776G>A	c.(1774-1776)GCG>GCA	p.A592A	CCDC81_uc001pbw.1_Silent_p.A502A|CCDC81_uc010rtq.1_Silent_p.A375A|CCDC81_uc001pby.1_Silent_p.A327A	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	592										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				GGAGTGCTGCGATGAAGAAGC	0.463000													39	870					0	0	0.00148497	0	0
TMEM135	65084	broad.mit.edu	37	11	86749157	86749158	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:86749157_86749158CG>AT	uc001pch.2	+	1	93_94	c.70_71CG>AT	c.(70-72)CGG>ATG	p.R24M	TMEM135_uc010rtt.1_Translation_Start_Site|TMEM135_uc001pci.2_Missense_Mutation_p.R24M|TMEM135_uc001pcg.1_Missense_Mutation_p.R24M	NM_022918	NP_075069	Q86UB9	TM135_HUMAN	transmembrane protein 135	24						integral to membrane					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CCCTTCCTGCCGGGTCTCCTTC	0.624000													8	608					0	0	6.4e-05	0	0
CTSC	1075	broad.mit.edu	37	11	88029397	88029398	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:88029397_88029398CC>AA	uc001pck.3	-	6	893_894	c.792_793GG>TT	c.(790-795)ATGGGT>ATTTGT	p.264_265MG>IC	CTSC_uc001pcl.3_Missense_Mutation_p.116_117MG>IC	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	264_265					immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TCTAGCATACCCATAGAAGCAA	0.446000													14	762					0	0	6.4e-05	0	0
DDX10	1662	broad.mit.edu	37	11	108712205	108712205	+	Splice_Site	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:108712205T>C	uc001pkm.2	+	15	2312	c.2247_splice	c.e15+2	p.R749_splice	DDX10_uc001pkl.1_Splice_Site_p.R749_splice	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10								ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		AAGCATCGGGTAAGCTTTCCA	0.308000			T	NUP98	AML*								13	15					0	0	0.000308642	0	0
TECTA	7007	broad.mit.edu	37	11	120996244	120996244	+	Silent	SNP	G	A	A	rs140634094		TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:120996244G>A	uc010rzo.1	+	7	1437	c.1437G>A	c.(1435-1437)CCG>CCA	p.P479P		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	479	VWFD 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ATGGCAGGCCGGCCATGTCTG	0.577000													31	44					0	0	0.00178596	0	0
CD163	9332	broad.mit.edu	37	12	7653993	7653993	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:7653993T>C	uc001qsz.3	-	3	327	c.199A>G	c.(199-201)AAA>GAA	p.K67E	CD163_uc001qta.3_Missense_Mutation_p.K67E|CD163_uc009zfw.2_Missense_Mutation_p.K67E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	67	SRCR 1.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCCTGGACTTTCACTTCCACT	0.498000													30	53					0	0	0.000339439	0	0
NOS1	4842	broad.mit.edu	37	12	117749303	117749303	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr12:117749303C>T	uc001twm.1	-	3	1506	c.820G>A	c.(820-822)GTC>ATC	p.V274I		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	274					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTGTTGAGGACGACAGGCACA	0.557000													7	19					0	0	0.000157383	0	0
SKA3	221150	broad.mit.edu	37	13	21729945	21729945	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr13:21729945T>A	uc001unt.2	-	8	1219	c.1125A>T	c.(1123-1125)TTA>TTT	p.L375F	SKA3_uc001unv.2_Missense_Mutation_p.L293F|SKA3_uc001unu.2_Intron	NM_145061	NP_659498	Q8IX90	SKA3_HUMAN	SKA3	375					cell division|chromosome segregation|mitosis|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytoplasm|spindle microtubule	protein binding				0						TGTATTTTGATAAAAGCTAAA	0.323000													11	89					0	0	0.000566183	0	0
DIS3	22894	broad.mit.edu	37	13	73350130	73350130	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr13:73350130C>G	uc001vix.3	-	5	1129	c.755G>C	c.(754-756)AGA>ACA	p.R252T	DIS3_uc001viy.3_Missense_Mutation_p.R222T|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	252					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		CCTGCTAGCTCTAAATGTTCC	0.328000										Multiple Myeloma(4;0.011)			31	34					0	0	0.000409698	0	0
CTDSPL2	51496	broad.mit.edu	37	15	44751268	44751268	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr15:44751268G>A	uc001ztr.2	+	2	472	c.56G>A	c.(55-57)CGC>CAC	p.R19H	CTDSPL2_uc001zts.2_Missense_Mutation_p.R19H|CTDSPL2_uc001ztt.2_Missense_Mutation_p.R19H|CTDSPL2_uc010bdv.2_Missense_Mutation_p.R19H	NM_016396	NP_057480	Q05D32	CTSL2_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	19							phosphoprotein phosphatase activity				0		all_cancers(109;4.36e-14)|all_epithelial(112;9.8e-12)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.0122)		all cancers(107;1.02e-20)|GBM - Glioblastoma multiforme(94;1.49e-06)|COAD - Colon adenocarcinoma(120;0.0857)|Colorectal(105;0.0905)		CAAACACAACGCACTGCCAGA	0.403000													31	42					0	0	0.000339439	0	0
MYO5A	4644	broad.mit.edu	37	15	52697566	52697566	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr15:52697566C>G	uc002aby.2	-	9	1215	c.971G>C	c.(970-972)GGA>GCA	p.G324A	MYO5A_uc002abx.3_Missense_Mutation_p.G324A|MYO5A_uc010uge.1_Missense_Mutation_p.G193A	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	324	Myosin head-like.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		TCGGAAAATTCCCATTTGATG	0.368000													51	297					0	0	0.000781405	0	0
LARP6	55323	broad.mit.edu	37	15	71124798	71124798	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr15:71124798C>T	uc002ass.2	-	3	1140	c.1069G>A	c.(1069-1071)GCC>ACC	p.A357T		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	357					RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						TTGTTGGTGGCCGCGTGCCGT	0.607000													6	66					0	0	8.12818e-05	0	0
ZNF423	23090	broad.mit.edu	37	16	49672281	49672281	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr16:49672281T>C	uc002efs.2	-	5	1080	c.782A>G	c.(781-783)GAC>GGC	p.D261G	ZNF423_uc010vgn.1_Missense_Mutation_p.D144G	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	261					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CATGAAGTCGTCCTTCTTGGC	0.607000													9	19					0	0	0.000274275	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	C	C	rs139671425	by1000genomes	TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:39240627T>C	uc010wfn.1	+	1	169	c.169T>C	c.(169-171)TCT>CCT	p.S57P		NM_033061	NP_149050			keratin associated protein 4-7												0						GTGCTGCCAGTCTGTGTGCTG	0.493000													5	31					0	0	8.12818e-05	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274415	39274415	+	Silent	SNP	C	T	T	rs425487	by1000genomes	TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:39274415C>T	uc002hvz.2	-	1	192	c.153G>A	c.(151-153)AGG>AGA	p.R51R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	51	6.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCACTGGGGCCTGCAGCAGC	0.667000													8	22					0	0	0.000274275	0	0
BRIP1	83990	broad.mit.edu	37	17	59871040	59871040	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:59871040G>C	uc002izk.1	-	10	1532	c.1391C>G	c.(1390-1392)GCT>GGT	p.A464G		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	464					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						TATTTTACAAGCTGATTCATA	0.333000			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				8	18					0	0	0.000157383	0	0
EVPL	2125	broad.mit.edu	37	17	74005670	74005670	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr17:74005670T>C	uc002jqi.2	-	22	3844	c.3616A>G	c.(3616-3618)ACA>GCA	p.T1206A	EVPL_uc010wss.1_Missense_Mutation_p.T1228A|EVPL_uc010wst.1_Missense_Mutation_p.T676A	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1206	Central fibrous rod domain.|Plectin 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCCTGCTCTGTCTCCGGATCC	0.622000													11	122					0	0	0.000673444	0	0
MYOM1	8736	broad.mit.edu	37	18	3188908	3188908	+	Silent	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr18:3188908T>C	uc002klp.2	-	4	943	c.609A>G	c.(607-609)ACA>ACG	p.T203T	MYOM1_uc002klq.2_Silent_p.T203T	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	203	4.|6 X 6 AA tandem repeats.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GCTTGGATGCTGTGGACTGCT	0.532000													3	84					0	0	0.000602214	0	0
TUBB6	84617	broad.mit.edu	37	18	12308734	12308734	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr18:12308734T>C	uc002kqw.2	+	2	151	c.106T>C	c.(106-108)TAC>CAC	p.Y36H	TUBB6_uc002kqv.2_5'UTR|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Missense_Mutation_p.Y36H|TUBB6_uc002kqy.2_Missense_Mutation_p.Y36H	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	36					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		GGCCGGAGGCTACGTGGGAGA	0.652000													15	73					0	0	0.000958276	0	0
PPAP2C	8612	broad.mit.edu	37	19	287703	287703	+	Missense_Mutation	SNP	G	A	A	rs61745392	byFrequency	TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:287703G>A	uc002loi.2	-	3	352	c.253C>T	c.(253-255)CGC>TGC	p.R85C	PPAP2C_uc002loh.2_Missense_Mutation_p.R106C|PPAP2C_uc002loj.2_Missense_Mutation_p.R29C	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	85					sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGTCCGAGCGAGAATAGAGC	0.622000													88	137					0	0	0.000781405	0	0
MYH14	79784	broad.mit.edu	37	19	50735328	50735328	+	Splice_Site	SNP	G	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:50735328G>C	uc002prr.1	+	9	1137	c.1090_splice	c.e9+1	p.S364_splice	MYH14_uc010enu.1_Splice_Site_p.S372_splice|MYH14_uc002prq.1_Splice_Site_p.S372_splice	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2						axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GAAATCATCTGTGAGTGAGCC	0.582000													9	26					0	0	0.000673444	0	0
JOSD2	126119	broad.mit.edu	37	19	51013582	51013582	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:51013582T>G	uc002psn.1	-	2	138	c.107A>C	c.(106-108)CAG>CCG	p.Q36P	JOSD2_uc002pso.1_Missense_Mutation_p.Q36P|JOSD2_uc002psp.1_Missense_Mutation_p.Q36P|JOSD2_uc002psq.1_Missense_Mutation_p.Q36P	NM_138334	NP_612207	Q8TAC2	JOS2_HUMAN	Josephin domain containing 2	36	Josephin.				protein deubiquitination		ubiquitin-specific protease activity				0		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00743)|GBM - Glioblastoma multiforme(134;0.0364)		GCTAAAGAGCTGCTGCTGCAG	0.662000													16	62					0	0	0.000566183	0	0
LIM2	3982	broad.mit.edu	37	19	51883857	51883857	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:51883857C>G	uc002pwm.2	-	4	406	c.362G>C	c.(361-363)GGA>GCA	p.G121A	LIM2_uc002pwl.2_Missense_Mutation_p.G163A	NM_001161748	NP_001155220	P55344	LMIP_HUMAN	lens intrinsic membrane protein 2, 19kDa isoform	121	Extracellular (Potential).				cell-cell junction assembly	cell junction|integral to membrane	structural constituent of eye lens				0		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000214)|OV - Ovarian serous cystadenocarcinoma(262;0.00985)		GACGGTGACTCCAGTGTAGAT	0.423000													16	38					0	0	0.000422831	0	0
NLRP2	55655	broad.mit.edu	37	19	55495050	55495050	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr19:55495050C>A	uc002qij.2	+	6	2070	c.1984C>A	c.(1984-1986)CTC>ATC	p.L662I	NLRP2_uc010yfp.1_Missense_Mutation_p.L639I|NLRP2_uc010esn.2_Missense_Mutation_p.L638I|NLRP2_uc010eso.2_Missense_Mutation_p.L659I|NLRP2_uc010esp.2_Missense_Mutation_p.L640I	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	662					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		AAAGGAGAATCTCCCGGAGAA	0.493000													8	22					1.06961e-07	2.64018e-06	0.000157383	1	0
ZNF512	84450	broad.mit.edu	37	2	27826170	27826170	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr2:27826170G>A	uc002rla.2	+	9	1019	c.932G>A	c.(931-933)GGG>GAG	p.G311E	ZNF512_uc010ylv.1_Missense_Mutation_p.G232E|ZNF512_uc010ylw.1_Missense_Mutation_p.G282E|ZNF512_uc002rlb.2_Missense_Mutation_p.G232E|ZNF512_uc010ylx.1_Missense_Mutation_p.G232E|ZNF512_uc002rlc.2_Missense_Mutation_p.G232E|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Missense_Mutation_p.G204E	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	311					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TCAGAGCATGGGCCTGTGAGT	0.493000													21	82					0	0	0.00106085	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47592647	47592647	+	Silent	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr20:47592647C>T	uc002xtx.3	+	14	2021	c.1869C>T	c.(1867-1869)TCC>TCT	p.S623S		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	623					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			CCACAGTGTCCTCGGGGACCC	0.537000													8	36					0	0	0.000274275	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43802280	43802280	+	Silent	SNP	G	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr21:43802280G>T	uc002zbb.2	-	9	1047	c.846C>A	c.(844-846)GCC>GCA	p.A282A	TMPRSS3_uc002zay.2_Silent_p.A40A|TMPRSS3_uc002zaz.2_Silent_p.A155A|TMPRSS3_uc002zba.2_Silent_p.A155A|TMPRSS3_uc002zbc.2_Silent_p.A282A|TMPRSS3_uc002zbd.2_Silent_p.A282A	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	282	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						AGTGGGATGGGGCTGGATTGT	0.527000													18	57					5.35267e-07	1.30471e-05	0.000958276	1	0
DZIP3	9666	broad.mit.edu	37	3	108363492	108363492	+	Silent	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:108363492G>A	uc003dxd.2	+	14	2045	c.1623G>A	c.(1621-1623)GGG>GGA	p.G541G	DZIP3_uc003dxf.1_Silent_p.G541G|DZIP3_uc011bhm.1_Intron|DZIP3_uc003dxe.1_Silent_p.G541G|DZIP3_uc003dxg.1_Silent_p.G264G	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	541					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TGCGCCTTGGGATGATGCAAG	0.408000													23	54					0	0	0.00188189	0	0
DPPA2	151871	broad.mit.edu	37	3	109033385	109033385	+	Nonsense_Mutation	SNP	G	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:109033385G>C	uc003dxo.2	-	2	252	c.5C>G	c.(4-6)TCA>TGA	p.S2*		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	2						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						ATTTGCATCTGACATTTTCAG	0.378000													16	14					0	0	0.00121646	0	0
EEFSEC	60678	broad.mit.edu	37	3	127965854	127965854	+	Silent	SNP	C	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:127965854C>A	uc003eki.2	+	2	530	c.492C>A	c.(490-492)ACC>ACA	p.T164T	EEFSEC_uc003ekj.2_Silent_p.T164T	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	164						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						ATAAAATGACCAAGAAAATGC	0.463000													7	136					0.000157383	0.00369756	0.000157383	1	0
PLSCR4	57088	broad.mit.edu	37	3	145917809	145917809	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:145917809T>C	uc010huy.2	-	6	744	c.415A>G	c.(415-417)ACT>GCT	p.T139A	PLSCR4_uc010huz.2_Missense_Mutation_p.T139A|PLSCR4_uc003evt.3_Missense_Mutation_p.T139A|PLSCR4_uc010hva.2_Intron|PLSCR4_uc003evu.3_Intron	NM_001128305	NP_001121777	Q9NRQ2	PLS4_HUMAN	phospholipid scramblase 4 isoform a	139	Cytoplasmic (By similarity).				blood coagulation|phospholipid scrambling	integral to membrane	calcium ion binding|phospholipid scramblase activity|SH3 domain binding				0						CTATTATTAGTTTCAAAACAT	0.323000													11	8					0	0	0.000978159	0	0
PLCH1	23007	broad.mit.edu	37	3	155199621	155199621	+	Silent	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:155199621G>A	uc011bok.1	-	23	4495	c.4218C>T	c.(4216-4218)AAC>AAT	p.N1406N	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.N1368N	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1406					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TACAGTAGCCGTTTCTCAAAC	0.413000													39	18					0	0	0.000589545	0	0
AP2M1	1173	broad.mit.edu	37	3	183898715	183898715	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr3:183898715C>T	uc011bqx.1	+	6	665	c.508C>T	c.(508-510)CGG>TGG	p.R170W	AP2M1_uc003fmw.2_Missense_Mutation_p.R168W|AP2M1_uc003fmx.2_Intron|AP2M1_uc003fmy.2_Missense_Mutation_p.R168W|AP2M1_uc011bqy.1_Missense_Mutation_p.R40W|AP2M1_uc011bqz.1_5'UTR	NM_004068	NP_004059	Q96CW1	AP2M1_HUMAN	adaptor-related protein complex 2, mu 1 subunit	170	MHD.				axon guidance|cellular membrane organization|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|clathrin coat of coated pit|cytosol|endocytic vesicle membrane|peroxisomal membrane	lipid binding|protein binding|transporter activity				0	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.92e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CAAGTATCGTCGGAATGAGCT	0.552000													34	70					0	0	0.000953801	0	0
LRBA	987	broad.mit.edu	37	4	151773037	151773037	+	Silent	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr4:151773037C>T	uc010ipj.2	-	23	4299	c.3825G>A	c.(3823-3825)GAG>GAA	p.E1275E	LRBA_uc003ilt.3_5'Flank|LRBA_uc003ilu.3_Silent_p.E1275E	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1275						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					ATAAAATCACCTCAAGCACAT	0.368000													13	17					0	0	0.00136819	0	0
CLCN3	1182	broad.mit.edu	37	4	170618531	170618531	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr4:170618531G>T	uc003isi.2	+	9	1718	c.1209G>T	c.(1207-1209)TGG>TGT	p.W403C	CLCN3_uc003ish.2_Missense_Mutation_p.W403C|CLCN3_uc011cjz.1_Missense_Mutation_p.W386C|CLCN3_uc011cka.1_Missense_Mutation_p.W376C|CLCN3_uc003isj.1_Missense_Mutation_p.W376C	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	403	Helical; (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		GAGGGCTTTGGGGAGCCTTTT	0.438000													7	154					0.000274275	0.0063671	0.000274275	1	0
NDUFAF2	91942	broad.mit.edu	37	5	60369037	60369037	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:60369037G>A	uc003jsp.3	+	2	340	c.213G>A	c.(211-213)TGG>TGA	p.W71*	NDUFAF2_uc003jso.3_Intron	NM_174889	NP_777549	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	71						membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity				0		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				CAACAGAATGGGAAGGTAAGT	0.318000													82	132					0	0	0.000781405	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554431	140554431	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:140554431G>A	uc003lit.2	+	1	2189	c.2015G>A	c.(2014-2016)CGG>CAG	p.R672Q	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	672	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTACCTGCGGCTCCCGGAG	0.692000													8	55					0	0	0.000274275	0	0
CDHR2	54825	broad.mit.edu	37	5	176005428	176005428	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:176005428T>C	uc003mem.1	+	16	1703	c.1637T>C	c.(1636-1638)CTG>CCG	p.L546P	CDHR2_uc003men.1_Missense_Mutation_p.L546P	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	546	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GGTGAGCTGCTGGACCGGGAG	0.557000													4	24					0	0	0.000602214	0	0
SLC17A4	10050	broad.mit.edu	37	6	25770658	25770658	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr6:25770658C>A	uc003nfe.2	+	5	697	c.578C>A	c.(577-579)CCC>CAC	p.P193H	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Intron|SLC17A4_uc003nfg.2_Missense_Mutation_p.P130H	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	193					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						AAATGGGCTCCCCCACTGGAA	0.458000													21	132					7.41877e-09	1.85469e-07	0.00188189	1	0
PGK2	5232	broad.mit.edu	37	6	49754466	49754466	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr6:49754466A>T	uc003ozu.2	-	1	542	c.435T>A	c.(433-435)GAT>GAA	p.D145E		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	145					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					CTTCTATTTTATCTGGCTCAG	0.507000													41	50					0	0	0.000509022	0	0
TXLNB	167838	broad.mit.edu	37	6	139591648	139591648	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr6:139591648C>T	uc011eds.1	-	4	797	c.632G>A	c.(631-633)CGA>CAA	p.R211Q		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	211	Potential.					cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		CAATTTGCTTCGAGCGAGGAT	0.443000													23	36					0	0	0.000586117	0	0
LPA	4018	broad.mit.edu	37	6	160969513	160969513	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr6:160969513G>A	uc003qtl.2	-	32	5272	c.5152C>T	c.(5152-5154)CAA>TAA	p.Q1718*		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4226	Kringle 37.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TTCTTACCTTGTTCAGAAGGA	0.512000													11	26					0	0	0.00136819	0	0
MLLT4	4301	broad.mit.edu	37	6	168281157	168281157	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr6:168281157G>T	uc003qwd.2	+	6	996	c.854G>T	c.(853-855)GGT>GTT	p.G285V	MLLT4_uc003qwb.1_Missense_Mutation_p.G285V|MLLT4_uc003qwc.1_Missense_Mutation_p.G286V|MLLT4_uc003qwf.2_5'UTR	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	286	Ras-associating 2.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GAGAAGTATGGTCTGGAAAAA	0.383000			T	MLL	AL								46	107					4.10826e-27	1.0404e-25	0.000781405	1	0
ZNF716	441234	broad.mit.edu	37	7	57522874	57522874	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr7:57522874G>T	uc011kdi.1	+	3	374	c.262G>T	c.(262-264)GTT>TTT	p.V88F		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						CAAACACCCAGGTAGGTGAGA	0.453000													14	87					0.000308642	0.00708061	0.000308642	1	0
RELN	5649	broad.mit.edu	37	7	103290823	103290823	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr7:103290823G>A	uc003vca.2	-	16	2060	c.1900C>T	c.(1900-1902)CGA>TGA	p.R634*	RELN_uc010liz.2_Nonsense_Mutation_p.R634*	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	634					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATTGTTATTCGGTTCCACCTG	0.413000													7	77					0	0	8.12818e-05	0	0
CREB3L2	64764	broad.mit.edu	37	7	137612996	137612996	+	Silent	SNP	C	T	T	rs146953741	byFrequency	TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr7:137612996C>T	uc003vtw.2	-	2	614	c.219G>A	c.(217-219)CCG>CCA	p.P73P	CREB3L2_uc003vtx.1_Silent_p.P73P|CREB3L2_uc003vty.3_Silent_p.P73P|CREB3L2_uc003vtv.2_Silent_p.P10P	NM_194071	NP_919047	Q70SY1	CR3L2_HUMAN	cAMP responsive element binding protein 3-like	73	Cytoplasmic (Potential).				chondrocyte differentiation|positive regulation of transcription, DNA-dependent|response to endoplasmic reticulum stress|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	cAMP response element binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L2(158)	soft_tissue(158)|upper_aerodigestive_tract(1)|ovary(1)	160						TGAGAGGCGCCGGGGACGTCG	0.577000			T	FUS	fibromyxoid sarcoma								12	12					0	0	0.00136819	0	0
OR2A5	393046	broad.mit.edu	37	7	143747506	143747506	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr7:143747506T>A	uc011ktw.1	+	1	12	c.12T>A	c.(10-12)AAT>AAA	p.N4K		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					TGACAAAAAATCAGACATGGG	0.478000													17	65					0	0	0.00121646	0	0
CPNE3	8895	broad.mit.edu	37	8	87563304	87563304	+	Silent	SNP	C	T	T	rs137984538	by1000genomes	TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr8:87563304C>T	uc003ydv.2	+	13	1206	c.1044C>T	c.(1042-1044)GGC>GGT	p.G348G	CPNE3_uc003ydw.1_Silent_p.G64G	NM_003909	NP_003900	O75131	CPNE3_HUMAN	copine III	348	VWFA.				lipid metabolic process|vesicle-mediated transport	cytosol	calcium-dependent phospholipid binding|protein serine/threonine kinase activity|transporter activity			ovary(1)|skin(1)	2						TTGGTTTTGGCGCTCAGATAC	0.363000													7	30					0	0	8.12818e-05	0	0
EIF2C2	27161	broad.mit.edu	37	8	141557663	141557663	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr8:141557663T>C	uc003yvn.2	-	13	1692	c.1652A>G	c.(1651-1653)AAC>AGC	p.N551S	EIF2C2_uc010men.2_Missense_Mutation_p.N474S|EIF2C2_uc010meo.2_Missense_Mutation_p.N551S	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	551	Piwi.				mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CCTCTGCACGTTCTTCATCTG	0.622000													18	68					0	0	0.00074312	0	0
Unknown	0	broad.mit.edu	37	9	69067929	69067929	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr9:69067929G>A	uc004afe.1	+	3		c.744_splice	c.e3+1		uc010mnq.1_Splice_Site					Homo sapiens cDNA, FLJ18209.																		TGATATGTTGGTGAGTCAGTT	0.209000													4	8					0	0	8.12818e-05	0	0
GRIN3A	116443	broad.mit.edu	37	9	104499855	104499855	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr9:104499855T>C	uc004bbp.1	-	1	1008	c.407A>G	c.(406-408)AAC>AGC	p.N136S	GRIN3A_uc004bbq.1_Missense_Mutation_p.N136S	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	136	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TTCCACGCGGTTCAGGTTGTC	0.672000													3	10					0	0	0.000602214	0	0
CEL	1056	broad.mit.edu	37	9	135946427	135946427	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr9:135946427C>T	uc010naa.1	+	11	1563	c.1547C>T	c.(1546-1548)ACG>ATG	p.T516M		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	513					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		CCCTACACTACGGAAAACAGC	0.607000													9	70					0	0	0.00185496	0	0
LCN15	389812	broad.mit.edu	37	9	139658430	139658430	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr9:139658430G>T	uc004cjd.2	-	2	153	c.128C>A	c.(127-129)GCA>GAA	p.A43E		NM_203347	NP_976222	Q6UWW0	LCN15_HUMAN	lipocalin 15 precursor	43					lipid metabolic process	extracellular region	binding|transporter activity				0						GCAGTCAGATGCCATGGAGAC	0.657000													13	59					0.00010058	0.00239184	0.00136819	1	0
Unknown	0	broad.mit.edu	37	X	51151051	51151051	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chrX:51151051C>G	uc004dpj.2	+	1	1285	c.1183C>G	c.(1183-1185)CGT>GGT	p.R395G		NM_203407	NP_981952			hypothetical protein LOC340602																		GGTCCCAAGCCGTGCTTCCCC	0.587000													5	18					0	0	0.000602214	0	0
PPFIBP2	8495	broad.mit.edu	37	11	7672899	7672899	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:7672899delC	uc001mfj.3	+	23	2648	c.2260delC	c.(2260-2262)CGCfs	p.R754fs	PPFIBP2_uc010rbb.1_Frame_Shift_Del_p.R677fs|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Frame_Shift_Del_p.R688fs|PPFIBP2_uc010rbe.1_Frame_Shift_Del_p.R642fs|PPFIBP2_uc001mfl.3_Frame_Shift_Del_p.R611fs|PPFIBP2_uc009yfj.1_Frame_Shift_Del_p.R398fs	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	754	SAM 3.			R -> L (in Ref. 4; AAC26104).	cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		CCTGGAGCCACGCTTCACTGG	0.572													26	41	---	---	---	---					
TSKU	25987	broad.mit.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	-	-			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr11:76506673_76506675delCTG	uc001oxt.2	+	2	185_187	c.13_15delCTG	c.(13-15)CTGdel	p.L9del		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	9						extracellular region					0	Ovarian(111;0.112)					GCCGTGGCCCCTGCTGCTGCTGC	0.616													10	204	---	---	---	---					
HERC1	8925	broad.mit.edu	37	15	63970383	63970384	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr15:63970383_63970384insT	uc002amp.2	-	37	6878_6879	c.6730_6731insA	c.(6730-6732)ATTfs	p.I2244fs		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2244					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						ACATATCTTAATTTTGTGAAGC	0.436													8	78	---	---	---	---					
PLIN1	5346	broad.mit.edu	37	15	90209096	90209097	+	In_Frame_Ins	INS	-	CGG	CGG			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr15:90209096_90209097insCGG	uc010upx.1	-	9	1396_1397	c.1286_1287insCCG	c.(1285-1287)CGG>CGCCGG	p.429_429R>RR	PLIN1_uc002boh.2_In_Frame_Ins_p.429_429R>RR	NM_001145311	NP_001138783	O60240	PLIN1_HUMAN	perilipin 1	429					triglyceride catabolic process	lipid particle	lipid binding			central_nervous_system(1)|skin(1)	2						GCTCCGCCTCCCGGCGCTCGAC	0.569													6	8	---	---	---	---					
ACOXL	55289	broad.mit.edu	37	2	111789223	111789224	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr2:111789223_111789224insT	uc002tgr.3	+	16	1615_1616	c.1391_1392insT	c.(1390-1392)GATfs	p.D464fs	ACOXL_uc010fkc.2_Frame_Shift_Ins_p.D434fs|ACOXL_uc010yxk.1_Frame_Shift_Ins_p.D434fs	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	464					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						AAGAAGGAGGATTTTTTCCATG	0.450													16	76	---	---	---	---					
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	GCC	GCC			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chr5:112824048_112824049insGCC	uc003kql.3	-	1	479_480	c.63_64insGGC	c.(61-66)insGGC	p.21_22insG		NM_001085377	NP_001078846	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		ctgctgccgctgccgccgccgc	0.391													6	7	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-ER-A19T-06A-11D-A19A-08	TCGA-ER-A19T-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f98d326-5676-4257-9af8-0a5f5d3c2527	e694c1a2-86f0-43d0-95cc-4cfaf0b04060	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			3	4	---	---	---	---					
