Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ARHGEF16	27237	broad.mit.edu	37	1	3394499	3394499	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:3394499G>A	uc001akg.3	+	11	1782	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	ARHGEF16_uc001aki.2_Missense_Mutation_p.E224K|ARHGEF16_uc001akj.2_Missense_Mutation_p.E224K|ARHGEF16_uc010nzh.1_Missense_Mutation_p.E216K	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	512	PH.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		GTTCTTAGTGGAAGAAACCGG	0.572000													5	55					0	0	0.00116845	0	0
UBE4B	10277	broad.mit.edu	37	1	10197223	10197223	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:10197223C>T	uc001aqs.3	+	17	3036	c.2323C>T	c.(2323-2325)CGC>TGC	p.R775C	UBE4B_uc001aqr.3_Missense_Mutation_p.R646C|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.R230C|UBE4B_uc001aqt.1_Missense_Mutation_p.R115C	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	775					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		TAGTTGCCGTCGCTATATCCG	0.532000													7	124					0	0	0.00198382	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854496	12854496	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:12854496C>T	uc001auj.1	+	3	823	c.720C>T	c.(718-720)TCC>TCT	p.S240S		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	240											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCGTTTTCTCCAGGTGCCATC	0.448000													9	299					0	0	0.000274275	0	0
CASP9	842	broad.mit.edu	37	1	15819471	15819471	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:15819471G>A	uc001awn.2	-	9	1313	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	CASP9_uc001awm.1_3'UTR|CASP9_uc001awo.2_Silent_p.F256F|CASP9_uc001awp.2_Silent_p.F250F|CASP9_uc009voi.2_Silent_p.F250F|CASP9_uc010obm.1_Silent_p.F323F|CASP9_uc001awq.2_Silent_p.F323F	NM_001229	NP_001220	P55211	CASP9_HUMAN	caspase 9 isoform alpha preproprotein	406					activation of caspase activity by cytochrome c|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol	cysteine-type endopeptidase activity|enzyme activator activity|protein binding			central_nervous_system(1)|kidney(1)	2		Breast(348;0.000207)|all_lung(284;0.000211)|Colorectal(325;0.000259)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;8.49e-07)|COAD - Colon adenocarcinoma(227;4.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00013)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00763)|READ - Rectum adenocarcinoma(331;0.0655)		TTTTCCGGAGGAAATTAAAGC	0.473000													6	152					0	0	0.000157383	0	0
INPP5B	3633	broad.mit.edu	37	1	38357066	38357066	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:38357066G>A	uc001ccg.1	-	8	687	c.593C>T	c.(592-594)TCC>TTC	p.S198F	INPP5B_uc009vvk.1_Missense_Mutation_p.S139F|INPP5B_uc001ccf.1_Missense_Mutation_p.S34F|INPP5B_uc010oij.1_5'Flank	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	278					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TTGACCCCTGGAGCTTTGGTC	0.438000													9	199					0	0	0.000978159	0	0
SLC2A1	6513	broad.mit.edu	37	1	43395584	43395584	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:43395584G>A	uc001cik.2	-	5	1164	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	213	Cytoplasmic (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	TGATGAGCAGGAAGCGGGGAC	0.647000													6	56					0	0	0.00116845	0	0
CC2D1B	200014	broad.mit.edu	37	1	52825463	52825464	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:52825463_52825464GG>AA	uc001ctq.1	-	8	993_994	c.855_856CC>TT	c.(853-858)TCCCGA>TCTTGA	p.R286*	CC2D1B_uc001ctr.2_5'Flank|CC2D1B_uc001cts.2_5'UTR	NM_032449	NP_115825	Q5T0F9	C2D1B_HUMAN	coiled-coil and C2 domain containing 1B	286										ovary(2)	2						TCTCTCTGTCGGGATGACAGCA	0.574000													4	9					0	0	6.4e-05	0	0
INADL	10207	broad.mit.edu	37	1	62327314	62327314	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:62327314C>T	uc001dab.2	+	19	2528	c.2414C>T	c.(2413-2415)TCA>TTA	p.S805L	INADL_uc009waf.1_Missense_Mutation_p.S805L|INADL_uc001daa.2_Missense_Mutation_p.S805L|INADL_uc001dad.3_Missense_Mutation_p.S502L|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	805					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GATATAAATTCATCTTTAATA	0.264000													9	213					0	0	0.000442599	0	0
ROR1	4919	broad.mit.edu	37	1	64643156	64643156	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:64643156G>A	uc001dbj.2	+	9	1831	c.1432G>A	c.(1432-1434)GAA>AAA	p.E478K	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	478	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CTTTATGGAAGAATTGGGTGA	0.433000													5	218					0	0	0.000602214	0	0
PTGFR	5737	broad.mit.edu	37	1	78958745	78958745	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:78958745T>C	uc001din.2	+	2	583	c.317T>C	c.(316-318)GTC>GCC	p.V106A	PTGFR_uc001dim.2_Missense_Mutation_p.V106A	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	106	Extracellular (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	CAATCAAATGTCCTTTGCAGT	0.423000													4	104					0	0	0.00024832	0	0
ELTD1	64123	broad.mit.edu	37	1	79383604	79383604	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:79383604C>T	uc001diq.3	-	11	1749	c.1593G>A	c.(1591-1593)AAG>AAA	p.K531K		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	531	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TATAAAAATTCTTGTGCAAAA	0.388000													8	162					0	0	0.000274275	0	0
GBP7	388646	broad.mit.edu	37	1	89618021	89618021	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:89618021C>T	uc001dna.2	-	5	694	c.555G>A	c.(553-555)CTG>CTA	p.L185L	GBP2_uc001dmy.1_5'Flank	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	185						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		ACTTCAGCTCCAGGGTAAAAT	0.478000													9	116					0	0	0.000442599	0	0
AMY2B	280	broad.mit.edu	37	1	104116494	104116494	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:104116494G>A	uc001duq.2	+	6	1294	c.678G>A	c.(676-678)TTG>TTA	p.L226L	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Silent_p.L226L|AMY2B_uc001dus.1_5'Flank	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	226					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		AGGCAATTTTGGACAAACTGC	0.383000													8	200					0	0	0.000157383	0	0
KIAA1324	57535	broad.mit.edu	37	1	109714518	109714518	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:109714518C>T	uc001dwq.2	+	5	634	c.498C>T	c.(496-498)ATC>ATT	p.I166I	KIAA1324_uc009wex.1_Silent_p.I166I|KIAA1324_uc009wey.2_Silent_p.I166I|KIAA1324_uc010ovg.1_Silent_p.I64I	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	166	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		GCGACTACATCGCCTCCAACA	0.562000													13	265					0	0	0.000422831	0	0
CELSR2	1952	broad.mit.edu	37	1	109793469	109793469	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:109793469C>T	uc001dxa.3	+	1	829	c.768C>T	c.(766-768)GTC>GTT	p.V256V		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	256	Cadherin 1.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		GCACCCACGTCTTCAGGGTCA	0.582000													13	211					0	0	0.000308642	0	0
PSRC1	84722	broad.mit.edu	37	1	109824257	109824257	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:109824257G>C	uc001dxg.2	-	4	625	c.503C>G	c.(502-504)CCC>CGC	p.P168R	PSRC1_uc001dxb.2_5'UTR|PSRC1_uc001dxc.2_Missense_Mutation_p.P168R|PSRC1_uc001dxd.2_Missense_Mutation_p.P168R|PSRC1_uc001dxe.2_Missense_Mutation_p.P168R|PSRC1_uc001dxf.2_Missense_Mutation_p.P168R|PSRC1_uc001dxh.2_Missense_Mutation_p.P168R|PSRC1_uc001dxi.2_Missense_Mutation_p.P168R|PSRC1_uc001dxj.2_Missense_Mutation_p.P168R	NM_001032290	NP_001027461	Q6PGN9	PSRC1_HUMAN	proline/serine-rich coiled-coil 1 isoform c	168	4 X 4 AA repeats of P-X-X-P.				cell division|microtubule bundle formation|mitotic metaphase plate congression|negative regulation of cell growth|positive regulation of microtubule polymerization|positive regulation of transcription, DNA-dependent|regulation of mitotic spindle organization	cytosol|midbody|spindle pole	microtubule binding				0		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0286)|Lung(183;0.0658)|COAD - Colon adenocarcinoma(174;0.112)|Epithelial(280;0.188)|all cancers(265;0.213)		CATGTTGGAGGGCCTCTTTCC	0.537000													5	165					0	0	0.000602214	0	0
HMGCS2	3158	broad.mit.edu	37	1	120295218	120295218	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:120295218C>T	uc001eid.2	-	8	1425	c.1374G>A	c.(1372-1374)GAG>GAA	p.E458E	HMGCS2_uc010oxj.1_Silent_p.E416E|HMGCS2_uc001eie.2_Silent_p.E366E	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	458					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		CTGTGAACTCCTCAGGAGACA	0.488000													9	441					0	0	0.000673444	0	0
HMGCS2	3158	broad.mit.edu	37	1	120295223	120295223	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:120295223G>A	uc001eid.2	-	8	1420	c.1369C>T	c.(1369-1371)CCT>TCT	p.P457S	HMGCS2_uc010oxj.1_Missense_Mutation_p.P415S|HMGCS2_uc001eie.2_Missense_Mutation_p.P365S	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	457					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		AACTCCTCAGGAGACACACAC	0.478000													10	441					0	0	0.00136819	0	0
ADAM30	11085	broad.mit.edu	37	1	120438381	120438381	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:120438381C>T	uc001eij.2	-	1	733	c.579G>A	c.(577-579)AGG>AGA	p.R193R		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	193					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CAGGAAAGTCCCTTAGCCTCG	0.408000													11	617					0	0	0.00136819	0	0
ANP32E	81611	broad.mit.edu	37	1	150193045	150193045	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:150193045C>G	uc001etw.2	-	7	1125	c.755G>C	c.(754-756)GGG>GCG	p.G252A	ANP32E_uc010pbt.1_RNA|ANP32E_uc010pbu.1_Missense_Mutation_p.G204A|ANP32E_uc010pbv.1_Missense_Mutation_p.G211A|ANP32E_uc001etv.3_Missense_Mutation_p.G251A	NM_030920	NP_112182	Q9BTT0	AN32E_HUMAN	acidic (leucine-rich) nuclear phosphoprotein 32	252	Asp/Glu-rich (highly acidic).					cytoplasmic membrane-bounded vesicle|nucleus	phosphatase inhibitor activity				0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCTCTTCTCCCCTCGAAGACC	0.378000													4	241					0	0	0.00024832	0	0
RPTN	126638	broad.mit.edu	37	1	152128228	152128228	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:152128228G>A	uc001ezs.1	-	3	1412	c.1347C>T	c.(1345-1347)TCC>TCT	p.S449S		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	449	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						GACCATAGTGGGAATTCTGGC	0.542000													13	535					0	0	0.000308642	0	0
FLG	2312	broad.mit.edu	37	1	152281478	152281478	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:152281478C>T	uc001ezu.1	-	3	5920	c.5884G>A	c.(5884-5886)GAA>AAA	p.E1962K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1962	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTCTGTCTTCGTGATGGGAC	0.567000									Ichthyosis				10	205					0	0	0.000978159	0	0
FLG	2312	broad.mit.edu	37	1	152285533	152285533	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:152285533C>T	uc001ezu.1	-	3	1865	c.1829G>A	c.(1828-1830)GGG>GAG	p.G610E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	610	Filaggrin 3.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCCTGGGCCCCGATGATTG	0.572000									Ichthyosis				9	170					0	0	0.000442599	0	0
FLG2	388698	broad.mit.edu	37	1	152323898	152323898	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:152323898A>G	uc001ezw.3	-	3	6437	c.6364T>C	c.(6364-6366)TCA>CCA	p.S2122P	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2122							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGTGTCCTGAATGTGTGTGT	0.527000													10	288					0	0	0.000673444	0	0
NUP210L	91181	broad.mit.edu	37	1	153998043	153998043	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:153998043T>C	uc001fdw.2	-	30	4169	c.4097A>G	c.(4096-4098)AAC>AGC	p.N1366S	NUP210L_uc009woq.2_Missense_Mutation_p.N275S|NUP210L_uc010peh.1_Missense_Mutation_p.N1366S	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1366						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			GGTTGTTTGGTTGACTCCAAA	0.413000													4	165					0	0	0.00024832	0	0
PRG4	10216	broad.mit.edu	37	1	186276100	186276100	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:186276100A>C	uc001gru.3	+	7	1300	c.1249A>C	c.(1249-1251)ACC>CCC	p.T417P	PRG4_uc001grt.3_Missense_Mutation_p.T376P|PRG4_uc009wyl.2_Missense_Mutation_p.T324P|PRG4_uc009wym.2_Missense_Mutation_p.T283P|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	417	9.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCACCACCACCAAGGAGCC	0.652000													3	27					0	0	0.00116845	0	0
PTGS2	5743	broad.mit.edu	37	1	186645642	186645642	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:186645642C>T	uc001gsb.2	-	7	1064	c.927G>A	c.(925-927)TGG>TGA	p.W309*	PTGS2_uc009wyo.2_Nonsense_Mutation_p.W156*	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	309					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	GCTCATCACCCCATTCAGGAT	0.448000													5	106					0	0	0.00116845	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204214775	204214775	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:204214775G>A	uc001hau.2	-	14	2317	c.2000C>T	c.(1999-2001)CCC>CTC	p.P667L	PLEKHA6_uc009xau.1_5'Flank|PLEKHA6_uc009xav.1_5'Flank	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	667										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GCCCCGGGAGGGGTTGTTCTT	0.597000													4	49					0	0	0.00024832	0	0
DYRK3	8444	broad.mit.edu	37	1	206821877	206821877	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:206821877C>T	uc001hej.2	+	3	1502	c.1334C>T	c.(1333-1335)TCC>TTC	p.S445F	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.S425F	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	445	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TTTATTAATTCCAAGGGCATA	0.547000													8	163					0	0	0.000274275	0	0
NEK2	4751	broad.mit.edu	37	1	211843679	211843679	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:211843679G>A	uc001hir.1	-	5	855	c.709C>T	c.(709-711)CCA>TCA	p.P237S	NEK2_uc001hiq.1_Missense_Mutation_p.P237S|NEK2_uc001his.3_Missense_Mutation_p.P237S|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	237	Protein kinase.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		TAACGGTATGGAATTCGCCTG	0.373000													6	196					0	0	0.00116845	0	0
USH2A	7399	broad.mit.edu	37	1	216251642	216251642	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:216251642C>T	uc001hku.1	-	27	5748	c.5361G>A	c.(5359-5361)GTG>GTA	p.V1787V		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1787	Laminin G-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GCAATAGATCCACTTGTGTAA	0.343000										HNSCC(13;0.011)			11	371					0	0	0.00136819	0	0
DISP1	84976	broad.mit.edu	37	1	223165393	223165393	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:223165393G>A	uc001hnu.1	+	6	977	c.830G>A	c.(829-831)AGA>AAA	p.R277K		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	277					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		CATTATGAAAGAGAGAAAAGA	0.398000													10	347					0	0	0.000978159	0	0
DISP1	84976	broad.mit.edu	37	1	223176169	223176169	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:223176169C>T	uc001hnu.1	+	8	1577	c.1430C>T	c.(1429-1431)TCT>TTT	p.S477F		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	477					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AACTGGAACTCTTCTGACGGC	0.438000													10	521					0	0	0.000978159	0	0
DISP1	84976	broad.mit.edu	37	1	223177256	223177256	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:223177256C>T	uc001hnu.1	+	8	2664	c.2517C>T	c.(2515-2517)TTC>TTT	p.F839F		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	839					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		ACCAAACATTCTTTTACCAGA	0.453000													9	390					0	0	0.000442599	0	0
TLR5	7100	broad.mit.edu	37	1	223285353	223285353	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:223285353G>A	uc001hnv.1	-	4	1467	c.1021C>T	c.(1021-1023)CTC>TTC	p.L341F	TLR5_uc001hnw.1_Missense_Mutation_p.L341F	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	341	Extracellular (Potential).|LRR 7.				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		GACAAATTGAGAACTTGGAGG	0.378000													5	124					0	0	0.000602214	0	0
EXO1	9156	broad.mit.edu	37	1	242016693	242016693	+	Silent	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:242016693A>G	uc001hzh.2	+	6	855	c.315A>G	c.(313-315)CAA>CAG	p.Q105Q	EXO1_uc001hzi.2_Silent_p.Q105Q|EXO1_uc001hzj.2_Silent_p.Q105Q|EXO1_uc009xgq.2_Silent_p.Q105Q	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	105					meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			AGGGAAAGCAACTTCTTCGTG	0.398000								Direct_reversal_of_damage|Editing_and_processing_nucleases					4	95					0	0	0.00024832	0	0
CNST	163882	broad.mit.edu	37	1	246754998	246754998	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:246754998G>A	uc001ibp.2	+	2	512	c.134G>A	c.(133-135)GGG>GAG	p.G45E	CNST_uc001ibo.3_Missense_Mutation_p.G45E	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	45					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						CAGCTTGACGGGGACGGGCAT	0.493000													4	36					0	0	0.00024832	0	0
OR1C1	26188	broad.mit.edu	37	1	247920823	247920823	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:247920823C>T	uc010pza.1	-	1	886	c.886G>A	c.(886-888)GAT>AAT	p.D296N		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CTCTTCATATCCCTGTTCCTT	0.428000													5	143					0	0	0.00198382	0	0
OR2L2	26246	broad.mit.edu	37	1	248201688	248201688	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:248201688G>A	uc001idw.2	+	1	215	c.119G>A	c.(118-120)GGA>GAA	p.G40E	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			GCTCTAATTGGAAATCTATCC	0.383000													6	222					0	0	0.00116845	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285727	248285727	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:248285727C>T	uc001idy.1	+	1	290	c.290C>T	c.(289-291)TCC>TTC	p.S97F		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						GCCACATTTTCCTTCTCCTAC	0.428000													6	136					0	0	0.00198382	0	0
KIN	22944	broad.mit.edu	37	10	7816796	7816796	+	Silent	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:7816796T>C	uc001ijt.2	-	7	714	c.666A>G	c.(664-666)TCA>TCG	p.S222S	KIN_uc010qaz.1_RNA|KIN_uc009xip.2_Silent_p.S222S|KIN_uc010qba.1_Silent_p.S116S	NM_012311	NP_036443	O60870	KIN17_HUMAN	HsKin17 protein	222					DNA recombination|DNA repair|DNA replication|interspecies interaction between organisms|mRNA processing	cytoplasm|nuclear matrix	double-stranded DNA binding|RNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CAGCTCACCTTGACTTGGAAG	0.318000													8	185					0	0	0.000673444	0	0
VIM	7431	broad.mit.edu	37	10	17278313	17278313	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:17278313C>T	uc001iou.2	+	9	1707	c.1294C>T	c.(1294-1296)CCT>TCT	p.P432S	VIM_uc001iov.1_Intron|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Missense_Mutation_p.P432S|VIM_uc001ioy.1_Missense_Mutation_p.P345S|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Missense_Mutation_p.P390S|VIM_uc001ipc.1_Intron	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	432	Tail.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						GGATTCACTCCCTCTGGTTGA	0.348000													6	232					0	0	0.000274275	0	0
APBB1IP	54518	broad.mit.edu	37	10	26800700	26800700	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:26800700G>A	uc001iss.2	+	7	877	c.556G>A	c.(556-558)GAT>AAT	p.D186N	APBB1IP_uc009xks.1_Missense_Mutation_p.D186N	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	186	Ras-associating.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						GCACATGAATGATAACAGCAC	0.478000													6	73					0	0	0.000157383	0	0
ALOX5	240	broad.mit.edu	37	10	45891369	45891369	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:45891369G>A	uc001jce.2	+	3	515	c.416G>A	c.(415-417)CGG>CAG	p.R139Q	ALOX5_uc009xmt.2_Missense_Mutation_p.R139Q|ALOX5_uc010qfg.1_Missense_Mutation_p.R139Q	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	139	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CTGGAAACACGGCAAAAACAA	0.448000													4	29					0	0	0.00024832	0	0
FAM13C	220965	broad.mit.edu	37	10	61062593	61062593	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:61062593C>T	uc001jkn.2	-	6	609	c.475G>A	c.(475-477)GAT>AAT	p.D159N	FAM13C_uc001jko.2_Missense_Mutation_p.D159N|FAM13C_uc010qid.1_Missense_Mutation_p.D76N|FAM13C_uc010qie.1_Missense_Mutation_p.D76N|FAM13C_uc010qif.1_Missense_Mutation_p.D181N|FAM13C_uc001jkp.2_Missense_Mutation_p.D76N	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	159										ovary(2)	2						TCAAAAGCATCCTTTGGCGAA	0.343000													6	158					0	0	0.00198382	0	0
ANK3	288	broad.mit.edu	37	10	61833786	61833786	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:61833786C>T	uc001jky.2	-	37	7045	c.6853G>A	c.(6853-6855)GAT>AAT	p.D2285N	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2285					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTGGAAGGATCCCGCCCGGAC	0.488000													7	137					0	0	0.000274275	0	0
SLC29A3	55315	broad.mit.edu	37	10	73082715	73082715	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:73082715G>A	uc001jrr.3	+	2	261	c.204G>A	c.(202-204)TGG>TGA	p.W68*	SLC29A3_uc001jrs.3_Nonsense_Mutation_p.W68*|SLC29A3_uc010qjq.1_5'UTR|SLC29A3_uc001jrt.3_5'UTR|SLC29A3_uc001jru.3_Intron	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	68	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						TACTGCCATGGAACTTCTTTA	0.592000													5	62					0	0	0.000602214	0	0
KCNMA1	3778	broad.mit.edu	37	10	78870048	78870048	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:78870048G>A	uc001jxn.2	-	8	1191	c.1014C>T	c.(1012-1014)ACC>ACT	p.T338T	KCNMA1_uc001jxj.2_Silent_p.T338T|KCNMA1_uc001jxk.1_5'UTR|KCNMA1_uc009xrt.1_Silent_p.T158T|KCNMA1_uc001jxl.1_5'UTR|KCNMA1_uc001jxo.2_Silent_p.T338T|KCNMA1_uc001jxm.2_Silent_p.T338T|KCNMA1_uc001jxq.2_Silent_p.T338T	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	338					cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	ATTCCCAGTAGGTGAGAGCCT	0.443000													9	199					0	0	0.00136819	0	0
C10orf12	26148	broad.mit.edu	37	10	98742291	98742292	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:98742291_98742292CC>TA	uc001kmv.2	+	1	1251_1252	c.1144_1145CC>TA	c.(1144-1146)CCT>TAT	p.P382Y	C10orf12_uc009xvg.1_Missense_Mutation_p.P692Y	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	382										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		GCCTCATTCTCCTCCTGAAATA	0.520000													6	62					0	0	6.4e-05	0	0
FAM24A	118670	broad.mit.edu	37	10	124671211	124671211	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:124671211G>A	uc001lgv.2	+	2	182	c.61G>A	c.(61-63)GTT>ATT	p.V21I		NM_001029888	NP_001025059	A6NFZ4	FA24A_HUMAN	family with sequence similarity 24, member A	21						extracellular region				ovary(2)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.124)|COAD - Colon adenocarcinoma(40;0.141)		CAGCTTACTGGTTGCCGCGAT	0.483000													8	305					0	0	0.000274275	0	0
C10orf90	118611	broad.mit.edu	37	10	128193020	128193020	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr10:128193020G>A	uc001ljq.2	-	3	870	c.749C>T	c.(748-750)TCC>TTC	p.S250F	C10orf90_uc001ljp.2_Missense_Mutation_p.S203F|C10orf90_uc010qum.1_Missense_Mutation_p.S347F|C10orf90_uc009yao.2_Missense_Mutation_p.S347F|C10orf90_uc001ljs.1_Missense_Mutation_p.S203F	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	250										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		GTGGACACAGGAACTGAACAC	0.532000											OREG0020616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	58					0	0	0.00024832	0	0
OR52B6	340980	broad.mit.edu	37	11	5602581	5602581	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:5602581G>A	uc010qzi.1	+	1	475	c.475G>A	c.(475-477)GTC>ATC	p.V159I	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACAAGCAAGGTCATTGGGAA	0.512000													6	197					0	0	0.00198382	0	0
OR52E6	390078	broad.mit.edu	37	11	5862204	5862204	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:5862204G>A	uc010qzq.1	-	1	924	c.924C>T	c.(922-924)TTC>TTT	p.F308F	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGTCTTGAAGAAAATCCTCA	0.443000													5	102					0	0	0.00116845	0	0
OR52L1	338751	broad.mit.edu	37	11	6007592	6007592	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:6007592G>A	uc001mcd.2	-	1	624	c.569C>T	c.(568-570)ACC>ATC	p.T190I		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCTATGATGGTGGCTTGGCA	0.493000													5	86					0	0	0.00116845	0	0
CTR9	9646	broad.mit.edu	37	11	10792099	10792099	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:10792099A>T	uc001mja.2	+	18	2441	c.2292A>T	c.(2290-2292)TTA>TTT	p.L764F		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	764					histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		TGCAAAGATTAGCTACCTCTG	0.358000													7	164					0	0	0.000157383	0	0
ABCC8	6833	broad.mit.edu	37	11	17482096	17482096	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:17482096G>A	uc001mnc.2	-	6	1076	c.950C>T	c.(949-951)CCA>CTA	p.P317L	ABCC8_uc010rcy.1_Missense_Mutation_p.P316L	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	317	Helical; Name=6; (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GATGCACAGTGGCCCGGCGAA	0.642000													11	198					0	0	0.000978159	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077842	19077842	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:19077842C>T	uc001mph.2	-	2	196	c.108G>A	c.(106-108)CTG>CTA	p.L36L		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	36	Helical; Name=1; (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						TGAAAAGGATCAGGAAGACCG	0.562000													8	127					0	0	0.000157383	0	0
SLC1A2	6506	broad.mit.edu	37	11	35333982	35333982	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:35333982C>T	uc001mwd.2	-	4	916	c.324G>A	c.(322-324)CTG>CTA	p.L108L	SLC1A2_uc001mwe.2_Silent_p.L99L|SLC1A2_uc010rev.1_Silent_p.L108L	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	108	Helical; (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	CCTTAGCATCCAGGCCTGACA	0.463000													6	50					0	0	0.00198382	0	0
TRAF6	7189	broad.mit.edu	37	11	36520147	36520147	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:36520147C>T	uc001mwr.1	-	4	680	c.340G>A	c.(340-342)GAA>AAA	p.E114K	TRAF6_uc001mws.1_Missense_Mutation_p.E114K	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	114	Interaction with TAX1BP1.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				AGTTGATTTTCCAGCAGTATT	0.353000													7	55					0	0	0.000157383	0	0
OR5L2	26338	broad.mit.edu	37	11	55594880	55594880	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:55594880C>T	uc001nhy.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TGTACTTTTTCCTCAGCCACT	0.463000										HNSCC(27;0.073)			9	157					0	0	0.000978159	0	0
ZDHHC5	25921	broad.mit.edu	37	11	57440628	57440628	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:57440628C>T	uc001nkx.1	+	2	1322	c.66C>T	c.(64-66)ATC>ATT	p.I22I	ZDHHC5_uc001nky.1_Intron	NM_015457	NP_056272	Q9C0B5	ZDHC5_HUMAN	zinc finger, DHHC domain containing 5	22	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			skin(1)	1						CAGCCGCCATCTTCCTAGTGG	0.537000													4	63					0	0	0.00024832	0	0
OR4D9	390199	broad.mit.edu	37	11	59282476	59282476	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:59282476C>T	uc010rkv.1	+	1	91	c.91C>T	c.(91-93)CTG>TTG	p.L31L		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATTTACCTTCCTGTTTTTGGT	0.433000													6	123					0	0	0.00198382	0	0
MS4A2	2206	broad.mit.edu	37	11	59857933	59857933	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:59857933G>A	uc001nop.2	+	3	413	c.311G>A	c.(310-312)GGA>GAA	p.G104E	MS4A2_uc009ymu.2_Missense_Mutation_p.G104E	NM_000139	NP_000130	Q01362	FCERB_HUMAN	membrane-spanning 4-domains, subfamily A, member	104	Helical; (Potential).				cell proliferation|humoral immune response	integral to plasma membrane	calcium channel activity			ovary(1)	1		all_epithelial(135;0.245)			Omalizumab(DB00043)	CCATTCTGGGGAGCCATATTT	0.338000													6	105					0	0	0.00198382	0	0
C11orf9	745	broad.mit.edu	37	11	61539208	61539208	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:61539208G>A	uc001nsc.1	+	6	1073	c.977G>A	c.(976-978)GGT>GAT	p.G326D	C11orf9_uc001nse.1_Missense_Mutation_p.G317D	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	326	NDT80.|Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CACCCGCCAGGTGCCCCCTCC	0.692000													6	62					0	0	0.000157383	0	0
AHNAK	79026	broad.mit.edu	37	11	62297784	62297784	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:62297784G>A	uc001ntl.2	-	5	4405	c.4105C>T	c.(4105-4107)CCA>TCA	p.P1369S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1369					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCCACATCTGGAGCACTAATG	0.488000													9	227					0	0	0.000442599	0	0
BSCL2	26580	broad.mit.edu	37	11	62458874	62458874	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:62458874G>A	uc001nuo.1	-	7	1115	c.691C>T	c.(691-693)CCG>TCG	p.P231S	LRRN4CL_uc001nun.2_5'Flank|BSCL2_uc009yoc.1_Intron|BSCL2_uc001nup.2_Missense_Mutation_p.P231S|BSCL2_uc001nuq.1_Missense_Mutation_p.P231S|BSCL2_uc001nur.3_Missense_Mutation_p.P295S|BSCL2_uc009yod.2_Missense_Mutation_p.P295S|BSCL2_uc001nut.3_Missense_Mutation_p.P295S|HNRNPUL2_uc001nuu.1_RNA	NM_032667	NP_116056	Q96G97	BSCL2_HUMAN	seipin isoform 2	231	Lumenal (Potential).				cell death	integral to endoplasmic reticulum membrane					0						CAGGTCATCGGGAAGTTGTAT	0.522000													11	251					0	0	0.000978159	0	0
MALAT1	378938	broad.mit.edu	37	11	65273126	65273126	+	RNA	SNP	G	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:65273126G>C	uc010roh.1	+	1		c.7894G>C			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TCCATAATCGGTTTCAAGGTA	0.478000													3	83					0	0	0.000602214	0	0
UBTFL1	642623	broad.mit.edu	37	11	89819824	89819824	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:89819824C>T	uc010rub.1	+	1	707	c.707C>T	c.(706-708)TCC>TTC	p.S236F		NM_001143975	NP_001137447	P0CB47	UBFL1_HUMAN	upstream binding transcription factor, RNA	236	HMG box 2.				multicellular organismal development	cytoplasm|nucleus	DNA binding				0						CACCAAGATTCCTGGTCAAGT	0.468000													5	65					0	0	0.00198382	0	0
FAT3	120114	broad.mit.edu	37	11	92086330	92086330	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:92086330G>A	uc001pdj.3	+	1	1069	c.1052G>A	c.(1051-1053)GGA>GAA	p.G351E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	351	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AAAGACAAGGGATCTCCTCAA	0.433000										TCGA Ovarian(4;0.039)			17	354					0	0	0.000958276	0	0
FAT3	120114	broad.mit.edu	37	11	92534320	92534320	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:92534320C>T	uc001pdj.3	+	9	8158	c.8141C>T	c.(8140-8142)TCC>TTC	p.S2714F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2714	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTCAGTATTCCTTTACCATT	0.498000										TCGA Ovarian(4;0.039)			8	530					0	0	0.000673444	0	0
FAT3	120114	broad.mit.edu	37	11	92616153	92616153	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:92616153G>A	uc001pdj.3	+	23	12548	c.12531G>A	c.(12529-12531)AAG>AAA	p.K4177K	FAT3_uc001pdi.3_Silent_p.K617K	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4177	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTTCCGCAAGAAGGTCTTCC	0.582000										TCGA Ovarian(4;0.039)			13	268					0	0	0.00185496	0	0
MTNR1B	4544	broad.mit.edu	37	11	92714658	92714658	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:92714658C>T	uc001pdk.1	+	2	372	c.269C>T	c.(268-270)GCC>GTC	p.A90V		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	90	Helical; Name=2; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	CTGGTGGTGGCCTTCTACCCC	0.572000													11	361					0	0	0.00185496	0	0
GRIK4	2900	broad.mit.edu	37	11	120776137	120776137	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:120776137G>A	uc001pxn.2	+	13	1698	c.1411G>A	c.(1411-1413)GGC>AGC	p.G471S	GRIK4_uc009zav.1_Missense_Mutation_p.G471S|GRIK4_uc009zaw.1_Missense_Mutation_p.G471S|GRIK4_uc009zax.1_Missense_Mutation_p.G471S	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	471	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	GGTTGGGGATGGCGTGTACGG	0.597000													6	83					0	0	0.000157383	0	0
CDON	50937	broad.mit.edu	37	11	125888252	125888252	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:125888252G>A	uc009zbw.2	-	5	741	c.613C>T	c.(613-615)CCT>TCT	p.P205S	CDON_uc001qdc.3_Missense_Mutation_p.P205S|CDON_uc001qdd.3_RNA|CDON_uc009zbx.2_Missense_Mutation_p.P205S	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	205	Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		CGGCCAATAGGTTCAACTTTT	0.383000													6	87					0	0	0.00116845	0	0
NCAPD3	23310	broad.mit.edu	37	11	134054884	134054884	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr11:134054884G>A	uc001qhd.1	-	18	2855	c.2249C>T	c.(2248-2250)CCC>CTC	p.P750L	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	750					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		GTTTGAATTGGGATTCTGCTG	0.453000													8	217					0	0	0.000157383	0	0
KCNA1	3736	broad.mit.edu	37	12	5021671	5021671	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:5021671G>A	uc001qnh.2	+	2	2232	c.1127G>A	c.(1126-1128)GGT>GAT	p.G376D		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	376	Selectivity filter (By similarity).				synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GTAGGATACGGTGACATGTAC	0.557000													8	174					0	0	0.000157383	0	0
PRB3	5544	broad.mit.edu	37	12	11420643	11420643	+	Silent	SNP	C	G	G	rs112519996		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:11420643C>G	uc001qzs.2	-	3	578	c.540G>C	c.(538-540)CCG>CCC	p.P180P	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	180	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|7.|Pro-rich.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			CTGGCTTTCCCGGATGAGGCG	0.632000													4	190					0	0	0.000602214	0	0
PRB1	5542	broad.mit.edu	37	12	11506852	11506852	+	Missense_Mutation	SNP	G	T	T	rs151023240		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:11506852G>T	uc001qzw.1	-	3	222	c.185C>A	c.(184-186)CCA>CAA	p.P62Q	PRB1_uc001qzu.1_Missense_Mutation_p.P62Q|PRB1_uc001qzv.1_Missense_Mutation_p.P62Q	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	123	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|4.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele M).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GCCTCCTTGTGGGGGTGGTCC	0.607000													8	172					0.000442599	0.00352304	0.000442599	1	0
MANSC1	54682	broad.mit.edu	37	12	12496068	12496068	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:12496068C>T	uc001rai.1	-	2	439	c.181G>A	c.(181-183)GAA>AAA	p.E61K	MANSC1_uc001raj.1_Missense_Mutation_p.E27K|MANSC1_uc009zht.1_Intron	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	61	MANSC.|Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		ATGCAGTCTTCTTGAGTTGAA	0.393000													6	103					0	0	0.00116845	0	0
ABCC9	10060	broad.mit.edu	37	12	21962843	21962843	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:21962843C>T	uc001rfi.1	-	35	4278	c.4258G>A	c.(4258-4260)GAA>AAA	p.E1420K	ABCC9_uc001rfh.2_Missense_Mutation_p.E1420K|ABCC9_uc001rfj.1_Missense_Mutation_p.E1384K|ABCC9_uc001rfg.2_5'Flank	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1420	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCTAAGGCTTCCCAGAGTCTG	0.313000													6	96					0	0	0.000442599	0	0
KLHDC5	57542	broad.mit.edu	37	12	27944754	27944754	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:27944754C>T	uc001rij.2	+	2	1063	c.986C>T	c.(985-987)CCC>CTC	p.P329L	KLHDC5_uc009zjj.2_RNA	NM_020782	NP_065833	Q9P2K6	KLDC5_HUMAN	kelch domain containing 5	329	Kelch 4.									ovary(1)|central_nervous_system(1)	2	Lung SC(9;0.0873)					TTTGTGGCGCCCTTACCCAAT	0.488000													8	197					0	0	0.000442599	0	0
CNTN1	1272	broad.mit.edu	37	12	41337963	41337963	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:41337963G>A	uc001rmm.1	+	14	1787	c.1674G>A	c.(1672-1674)AGG>AGA	p.R558R	CNTN1_uc009zjy.1_Silent_p.R558R|CNTN1_uc001rmn.1_Silent_p.R547R|CNTN1_uc001rmo.2_Silent_p.R558R	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	558	Ig-like C2-type 6.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				ACTACCAGAGGAATTTTATGG	0.353000													4	53					0	0	0.00024832	0	0
FAM113B	91523	broad.mit.edu	37	12	47630006	47630006	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:47630006C>T	uc001rpn.2	+	4	1891	c.1160C>T	c.(1159-1161)CCC>CTC	p.P387L	FAM113B_uc001rpq.2_Missense_Mutation_p.P387L	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	387	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					TTCCCCACACCCCGTTATCAG	0.567000													6	70					0	0	0.00198382	0	0
PDE1B	5153	broad.mit.edu	37	12	54971099	54971099	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:54971099G>A	uc001sgd.1	+	15	1764	c.1598G>A	c.(1597-1599)GGG>GAG	p.G533E	PDE1B_uc010soz.1_Missense_Mutation_p.G396E|PDE1B_uc010spa.1_Missense_Mutation_p.G492E|PDE1B_uc001sgf.2_Missense_Mutation_p.G396E|PDE1B_uc001sge.2_Missense_Mutation_p.G513E|PDE1B_uc009znq.2_Missense_Mutation_p.G329E	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	533					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AACCAGAATGGGAATCTGGAT	0.567000													6	94					0	0	0.00198382	0	0
OR9K2	441639	broad.mit.edu	37	12	55523878	55523878	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:55523878A>G	uc010spe.1	+	1	326	c.326A>G	c.(325-327)AAC>AGC	p.N109S		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	109	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GCTATGATCAACTTCTGGTCT	0.458000													5	138					0	0	0.00116845	0	0
MARS	4141	broad.mit.edu	37	12	57883716	57883716	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:57883716C>T	uc001sog.2	+	5	475	c.452C>T	c.(451-453)GCC>GTC	p.A151V	ARHGAP9_uc001sod.2_5'Flank|ARHGAP9_uc001soe.1_5'Flank|MARS_uc001sof.1_RNA|MARS_uc010srp.1_Intron|MARS_uc010srq.1_Intron	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	151	GST C-terminal.				methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	TTGTGGGGAGCCCTATACCCA	0.478000													6	180					0	0	0.00198382	0	0
GEFT	115557	broad.mit.edu	37	12	58010635	58010635	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:58010635C>T	uc001spb.2	+	15	2161	c.1701C>T	c.(1699-1701)CCC>CCT	p.P567P	GEFT_uc009zpy.2_Silent_p.P606P|GEFT_uc001spa.2_Silent_p.P461P|uc001spc.2_Intron|GEFT_uc001spd.2_Silent_p.P272P	NM_182947	NP_891992	Q86VW2	ARHGP_HUMAN	RhoA/RAC/CDC42 exchange factor isoform 1	567					regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity				0	Melanoma(17;0.122)					AAACCCCTCCCTGCCAAGCCA	0.537000													10	129					0	0	0.000673444	0	0
SLC16A7	9194	broad.mit.edu	37	12	60168437	60168437	+	Splice_Site	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:60168437G>A	uc001sqs.2	+	5	661	c.362_splice	c.e5-1	p.G121_splice	SLC16A7_uc001sqt.2_Splice_Site_p.G121_splice|SLC16A7_uc001squ.2_Splice_Site_p.G121_splice|SLC16A7_uc009zqi.2_Splice_Site_p.G22_splice|SLC16A7_uc010ssi.1_Splice_Site_p.G22_splice	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7							integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	GTTCTTTTTAGGTTTAGGTTT	0.413000													4	74					0	0	0.000602214	0	0
TRHDE	29953	broad.mit.edu	37	12	72866880	72866880	+	Missense_Mutation	SNP	G	A	A	rs147826771		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:72866880G>A	uc001sxa.2	+	5	1399	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	457	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TGTGTGGTGGGAAGACGTGTG	0.393000													8	224					0	0	0.000274275	0	0
PPFIA2	8499	broad.mit.edu	37	12	81741355	81741355	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:81741355C>T	uc001szo.1	-	18	2350	c.2189G>A	c.(2188-2190)CGA>CAA	p.R730Q	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_Intron	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	656										ovary(3)|lung(2)|pancreas(1)	6						GGCAGGGCTTCGAGGGGTGAG	0.517000													7	119					0	0	0.000274275	0	0
PLEKHG7	440107	broad.mit.edu	37	12	93139259	93139259	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:93139259C>T	uc001tcj.2	+	5	437	c.207C>T	c.(205-207)TTC>TTT	p.F69F		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G	69	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						TGCAGTATTTCCGAGGGAGTC	0.443000													7	102					0	0	0.000157383	0	0
FGD6	55785	broad.mit.edu	37	12	95604851	95604851	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:95604851G>A	uc001tdp.3	-	2	433	c.209C>T	c.(208-210)TCG>TTG	p.S70L	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	70					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CCTTGATGGCGACTGCCCAAT	0.418000													12	268					0	0	0.00185496	0	0
ANKS1B	56899	broad.mit.edu	37	12	99793502	99793502	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:99793502C>T	uc001tge.1	-	12	2080	c.1663G>A	c.(1663-1665)GGG>AGG	p.G555R	ANKS1B_uc001tgf.1_Missense_Mutation_p.G135R|ANKS1B_uc009ztt.1_Missense_Mutation_p.G521R	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	555						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CTTGTGCACCCTGTAGATGTG	0.428000													4	73					0	0	0.00024832	0	0
ACACB	32	broad.mit.edu	37	12	109650724	109650724	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:109650724C>T	uc001tob.2	+	22	3452	c.3333C>T	c.(3331-3333)ATC>ATT	p.I1111I	ACACB_uc001toc.2_Silent_p.I1111I	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1111					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CCCAGAGCATCGTGCAGTTGG	0.572000													8	75					0	0	0.000442599	0	0
HIP1R	9026	broad.mit.edu	37	12	123335444	123335444	+	Silent	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:123335444C>G	uc001udj.1	+	6	560	c.501C>G	c.(499-501)ACC>ACG	p.T167T	HIP1R_uc001udg.1_Silent_p.T155T|HIP1R_uc001udi.1_Silent_p.T167T	NM_003959	NP_003950	O75146	HIP1R_HUMAN	huntingtin interacting protein-1-related	167					receptor-mediated endocytosis	clathrin coated vesicle membrane|coated pit|perinuclear region of cytoplasm	actin binding|phosphatidylinositol binding			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;4.6e-05)|Epithelial(86;0.000119)|BRCA - Breast invasive adenocarcinoma(302;0.2)		CAGCTGGGACCGATGTCAACA	0.612000													3	41					0	0	0.000602214	0	0
SNRNP35	11066	broad.mit.edu	37	12	123950589	123950589	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:123950589T>A	uc001ufb.1	+	2	618	c.502T>A	c.(502-504)TTG>ATG	p.L168M	SNRNP35_uc010tar.1_Missense_Mutation_p.L173M|SNRNP35_uc009zxz.2_Missense_Mutation_p.L173M|SNRNP35_uc001ufc.1_Intron	NM_022717	NP_073208	Q16560	U1SBP_HUMAN	small nuclear ribonucleoprotein 35kDa (U11/U12)	168	Arg-rich.				mRNA processing	U12-type spliceosomal complex	nucleotide binding|RNA binding				0						ACCTATTAACTTGCCAGTTGT	0.542000													7	67					0	0	0.00198382	0	0
DNAH10	196385	broad.mit.edu	37	12	124419917	124419917	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:124419917G>A	uc001uft.3	+	78	13330	c.13305G>A	c.(13303-13305)ATG>ATA	p.M4435I	DNAH10_uc001ufu.3_Missense_Mutation_p.M348I	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	4435					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CCACCTCCATGAGAAGGAACG	0.552000													6	74					0	0	0.00116845	0	0
EP400	57634	broad.mit.edu	37	12	132505635	132505635	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr12:132505635C>T	uc001ujn.2	+	22	4494	c.4459C>T	c.(4459-4461)CCG>TCG	p.P1487S	EP400_uc001ujl.2_Missense_Mutation_p.P1486S|EP400_uc001ujm.2_Intron	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1523					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		AGCAGCAGCCCCGTTTCAGAC	0.493000													5	79					0	0	0.000602214	0	0
ATP12A	479	broad.mit.edu	37	13	25281496	25281496	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr13:25281496G>A	uc001upp.2	+	17	2605	c.2418G>A	c.(2416-2418)CTG>CTA	p.L806L	ATP12A_uc010aaa.2_Silent_p.L812L	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	806	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GCCCCTTTCTGATCTACATCA	0.502000													7	141					0	0	0.000274275	0	0
ATP8A2	51761	broad.mit.edu	37	13	26117517	26117517	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr13:26117517G>A	uc001uqk.2	+	10	1010	c.868G>A	c.(868-870)GGA>AGA	p.G290R	ATP8A2_uc010tdi.1_Missense_Mutation_p.G250R|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc001uql.1_Missense_Mutation_p.G250R	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	250	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		TGTTTATACTGGACACGACAC	0.378000													7	176					0	0	0.000157383	0	0
FLT1	2321	broad.mit.edu	37	13	29041198	29041198	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr13:29041198G>A	uc001usb.3	-	3	515	c.230C>T	c.(229-231)ACT>ATT	p.T77I	FLT1_uc010aar.1_Missense_Mutation_p.T77I|FLT1_uc001usc.3_Missense_Mutation_p.T77I|FLT1_uc010tdp.1_Missense_Mutation_p.T77I|FLT1_uc001usd.2_Missense_Mutation_p.T77I	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	77	Ig-like C2-type 1.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GGCAGATTTAGTTATGCTCAG	0.418000													7	159					0	0	0.00198382	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113181719	113181719	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr13:113181719G>A	uc001vse.1	-	12	1602	c.1415C>T	c.(1414-1416)CCT>CTT	p.P472L	TUBGCP3_uc010tjq.1_Missense_Mutation_p.P462L|TUBGCP3_uc001vsf.2_Missense_Mutation_p.P472L	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	472					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					CATAAACGAAGGAATCATCGA	0.368000													7	134					0	0	0.000442599	0	0
OR4E2	26686	broad.mit.edu	37	14	22133359	22133359	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr14:22133359G>A	uc010tmd.1	+	1	63	c.63G>A	c.(61-63)CGG>CGA	p.R21R		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CTGATAACCGGGTGCTGGAAA	0.408000													5	114					0	0	0.000602214	0	0
SLC35F4	341880	broad.mit.edu	37	14	58060760	58060760	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr14:58060760G>A	uc001xdb.1	-	2	294	c.294C>T	c.(292-294)TCC>TCT	p.S98S	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_5'UTR	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						CAGACAGTGGGGACAGTTGTC	0.478000													4	33					0	0	0.000602214	0	0
ESRRB	2103	broad.mit.edu	37	14	76948978	76948978	+	Silent	SNP	G	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr14:76948978G>T	uc001xsq.1	+	5	730	c.663G>T	c.(661-663)CCG>CCT	p.P221P	ESRRB_uc001xsr.2_Silent_p.P221P|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	221						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		TGGCTGAGCCGGACAAGCTCT	0.567000													4	37					0.00116845	0.00922669	0.00116845	1	0
CGNL1	84952	broad.mit.edu	37	15	57734666	57734666	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:57734666G>A	uc002aeg.2	+	4	1869	c.1793G>A	c.(1792-1794)GGA>GAA	p.G598E	CGNL1_uc010bfw.2_Missense_Mutation_p.G598E	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	598						myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGCGCCCAAGGAAATAACCAA	0.383000													5	57					0	0	0.00116845	0	0
KIF23	9493	broad.mit.edu	37	15	69737190	69737190	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:69737190C>T	uc002asb.2	+	19	2558	c.2441C>T	c.(2440-2442)TCT>TTT	p.S814F	KIF23_uc002asc.2_Missense_Mutation_p.S710F|KIF23_uc010bii.2_Intron|KIF23_uc010ukc.1_Missense_Mutation_p.S527F	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	814					blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						CGATCACGCTCTGCAGGAGAC	0.463000													6	60					0	0	0.00116845	0	0
NEO1	4756	broad.mit.edu	37	15	73562409	73562409	+	Silent	SNP	C	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:73562409C>A	uc002avm.3	+	17	2695	c.2553C>A	c.(2551-2553)CCC>CCA	p.P851P	NEO1_uc010ukx.1_Silent_p.P851P|NEO1_uc010uky.1_Silent_p.P851P|NEO1_uc010ukz.1_Silent_p.P275P|NEO1_uc002avn.3_Silent_p.P500P	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	851	Extracellular (Potential).				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						TGCCAGATCCCACTCCCATGA	0.448000													8	228					0.000274275	0.00219494	0.000274275	1	0
Unknown	0	broad.mit.edu	37	15	76074431	76074431	+	Missense_Mutation	SNP	C	T	T	rs149323153	by1000genomes	TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:76074431C>T	uc010umm.1	+	8	610	c.533C>T	c.(532-534)TCG>TTG	p.S178L	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CTCCAGTCCTCGAGCTGCAGA	0.547000													7	19					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	15	76074470	76074470	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:76074470A>G	uc010umm.1	+	8	649	c.572A>G	c.(571-573)CAG>CGG	p.Q191R	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CGGTTACAGCAGACCATAAAG	0.577000													4	26					0	0	0.000673444	0	0
HAPLN3	145864	broad.mit.edu	37	15	89424916	89424916	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:89424916C>T	uc002bnc.2	-	3	293	c.165G>A	c.(163-165)GAG>GAA	p.E55E	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Silent_p.E117E	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	55	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					ACAGGGTCTCCTCGGGTGTCT	0.617000													4	35					0	0	0.000602214	0	0
SV2B	9899	broad.mit.edu	37	15	91795126	91795126	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:91795126G>T	uc002bqv.2	+	2	920	c.529G>T	c.(529-531)GTC>TTC	p.V177F	SV2B_uc002bqt.2_Missense_Mutation_p.V177F|SV2B_uc010uqv.1_Missense_Mutation_p.V26F|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	177	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			AAGGAAGCGAGTCCTCAGCAT	0.577000													12	275					1.61879e-10	1.30247e-09	0.00136819	1	0
ITFG3	83986	broad.mit.edu	37	16	309980	309980	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:309980C>T	uc002cgf.2	+	5	593	c.398C>T	c.(397-399)CCC>CTC	p.P133L	ITFG3_uc010bqr.2_RNA|ITFG3_uc002cgg.2_Missense_Mutation_p.P133L|ITFG3_uc010uud.1_RNA|ITFG3_uc002cgh.2_Missense_Mutation_p.P133L	NM_032039	NP_114428	Q9H0X4	ITFG3_HUMAN	integrin alpha FG-GAP repeat containing 3	133	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(16;0.000129)|all_epithelial(16;0.000206)|Hepatocellular(16;0.00264)|Lung NSC(18;0.0626)|all_lung(18;0.13)				TTTTCCTCTCCCTGCACCTTT	0.642000													4	36					0	0	0.000602214	0	0
ZG16B	124220	broad.mit.edu	37	16	2880751	2880751	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:2880751G>A	uc002cru.2	+	3	293	c.217G>A	c.(217-219)GAA>AAA	p.E73K		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	73						extracellular region	sugar binding			ovary(1)	1						CTACGACCATGAAATCACAGG	0.537000													8	125					0	0	0.000274275	0	0
BTBD12	84464	broad.mit.edu	37	16	3632512	3632512	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:3632512C>T	uc002cvp.2	-	15	5963	c.5336G>A	c.(5335-5337)CGG>CAG	p.R1779Q		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1779	Interaction with PLK1 and TERF2-TERF2IP.|Interaction with SLX1.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTGCAGCTCCCGCAGCTCAAA	0.652000								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				6	81					0	0	0.000157383	0	0
PPL	5493	broad.mit.edu	37	16	4937169	4937169	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:4937169C>T	uc002cyd.1	-	21	2664	c.2574G>A	c.(2572-2574)CAG>CAA	p.Q858Q		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	858	Spectrin 4.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						ACTCCAGATTCTGCAGCCTCT	0.458000													8	234					0	0	0.000978159	0	0
KIAA0430	9665	broad.mit.edu	37	16	15716975	15716975	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:15716975A>T	uc002ddr.2	-	11	2469	c.2276T>A	c.(2275-2277)ATG>AAG	p.M759K	KIAA0430_uc002ddq.2_Intron|KIAA0430_uc010uzv.1_Missense_Mutation_p.M755K|KIAA0430_uc010uzw.1_Missense_Mutation_p.M758K	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	758						peroxisome	nucleotide binding|RNA binding				0						GTTTGGAGACATACTCCTGCT	0.373000													4	80					0	0	0.00024832	0	0
ACSM2B	348158	broad.mit.edu	37	16	20548635	20548635	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:20548635C>T	uc002dhj.3	-	15	1889	c.1679G>A	c.(1678-1680)CGA>CAA	p.R560Q	ACSM2B_uc002dhk.3_Missense_Mutation_p.R560Q	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	560					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						AAGTTTGGTTCGTTGAATTTT	0.473000													9	204					0	0	0.000442599	0	0
DNAH3	55567	broad.mit.edu	37	16	20999068	20999069	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:20999068_20999069CC>TT	uc010vbe.1	-	46	6828_6829	c.6828_6829GG>AA	c.(6826-6831)CGGGAC>CGAAAC	p.D2277N	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2277	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CGTGAGAAGTCCCGCAGGTTAA	0.475000													5	56					0	0	6.4e-05	0	0
DNAH3	55567	broad.mit.edu	37	16	21109965	21109965	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:21109965T>C	uc010vbe.1	-	17	2492	c.2492A>G	c.(2491-2493)AAC>AGC	p.N831S		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	831	Stem (By similarity).|Potential.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCGATTTAGGTTCTTTGAAAG	0.428000													5	118					0	0	0.00198382	0	0
SEPHS2	22928	broad.mit.edu	37	16	30455897	30455897	+	Silent	SNP	A	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:30455897A>C	uc010ves.1	-	2	1328	c.1152T>G	c.(1150-1152)GCT>GCG	p.A384A	SEPHS2_uc002dyh.1_Silent_p.A327A|SEPHS2_uc010vet.1_Silent_p.A266A	NM_012248	NP_036380	Q99611	SPS2_HUMAN	selenophosphate synthetase 2	384					selenocysteine biosynthetic process		ATP binding|selenide, water dikinase activity			breast(2)	2						AACAAAAGCGAGCCGCCTGTT	0.532000													6	71					0	0	0.00198382	0	0
ITGAM	3684	broad.mit.edu	37	16	31332869	31332869	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:31332869G>A	uc002ebq.2	+	16	2021	c.1923G>A	c.(1921-1923)CAG>CAA	p.Q641Q	ITGAM_uc002ebr.2_Silent_p.Q642Q|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_Silent_p.Q47Q|ITGAM_uc002ebs.1_Silent_p.Q47Q	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	641	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						GTAATGATCAGGTGGTGAAAG	0.522000													8	160					0	0	0.000274275	0	0
CYLD	1540	broad.mit.edu	37	16	50813885	50813885	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:50813885C>T	uc002egp.1	+	9	1863	c.1448C>T	c.(1447-1449)CCT>CTT	p.P483L	CYLD_uc002ego.2_Missense_Mutation_p.P480L|CYLD_uc010cbs.1_Missense_Mutation_p.P480L|CYLD_uc002egq.1_Missense_Mutation_p.P480L|CYLD_uc002egr.1_Missense_Mutation_p.P480L|CYLD_uc002egs.1_Missense_Mutation_p.P480L	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	483	Interaction with TRIP.|Interaction with IKBKG/NEMO.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				GAGAACCCTCCTTTCTATGGG	0.498000			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				4	53					0	0	0.00024832	0	0
KARS	3735	broad.mit.edu	37	16	75670437	75670437	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:75670437G>A	uc002feq.2	-	4	445	c.397C>T	c.(397-399)CAT>TAT	p.H133Y	KARS_uc002fer.2_Missense_Mutation_p.H161Y|KARS_uc002fes.2_5'UTR|KARS_uc010cgz.2_5'UTR	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	133					interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	CTTTTGGCATGGATCCTACCT	0.413000													7	143					0	0	0.000157383	0	0
SDR42E1	93517	broad.mit.edu	37	16	82032783	82032783	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:82032783A>G	uc002fgu.2	-	3	1243	c.1115T>C	c.(1114-1116)CTA>CCA	p.L372P		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	372	Helical; (Potential).				steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GAAGACCAATAGCCCATCCCA	0.488000													3	60					0	0	6.4e-05	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84906671	84906671	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr16:84906671G>A	uc010voh.1	+	10	1282	c.1055G>A	c.(1054-1056)AGG>AAG	p.R352K	CRISPLD2_uc010vog.1_Intron|CRISPLD2_uc002fio.2_Missense_Mutation_p.R351K|CRISPLD2_uc002fim.2_Missense_Mutation_p.R352K|CRISPLD2_uc002fin.3_Missense_Mutation_p.R352K	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	352	LCCL 1.					extracellular region|transport vesicle					0						GATATCACCAGGAACGGGAAG	0.572000													7	94					0	0	0.00198382	0	0
OR3A3	8392	broad.mit.edu	37	17	3324668	3324668	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:3324668G>A	uc010vrd.1	+	1	807	c.807G>A	c.(805-807)ATG>ATA	p.M269I		NM_012373	NP_036505	P47888	OR3A3_HUMAN	olfactory receptor, family 3, subfamily A,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCAGCTACATGAGGCTGGGTT	0.517000													9	108					0	0	0.000442599	0	0
ZZEF1	23140	broad.mit.edu	37	17	3917793	3917793	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:3917793G>A	uc002fxe.2	-	50	8226	c.8162C>T	c.(8161-8163)CCT>CTT	p.P2721L	ZZEF1_uc002fxg.1_Missense_Mutation_p.P42L	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2721							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GATGGCACCAGGAATGTGAAC	0.393000													6	95					0	0	0.00198382	0	0
ZNF232	7775	broad.mit.edu	37	17	5009521	5009521	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:5009521G>A	uc002gas.2	-	5	1606	c.852C>T	c.(850-852)ACC>ACT	p.T284T	ZNF232_uc002gar.1_Silent_p.T302T|ZNF232_uc002gat.2_Silent_p.T311T	NM_014519	NP_055334	Q9UNY5	ZN232_HUMAN	zinc finger protein 232	284	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						TATAAATGAAGGTTTTACCAC	0.433000													4	64					0	0	0.00024832	0	0
MYH8	4626	broad.mit.edu	37	17	10296412	10296412	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:10296412G>A	uc002gmm.2	-	36	5377	c.5282C>T	c.(5281-5283)GCC>GTC	p.A1761V	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1761	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ATCAGTGATGGCCTTCTTGGC	0.388000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				10	142					0	0	0.00136819	0	0
MYH1	4619	broad.mit.edu	37	17	10398388	10398388	+	Missense_Mutation	SNP	C	T	T	rs141339850		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:10398388C>T	uc002gmo.2	-	37	5420	c.5326G>A	c.(5326-5328)GAA>AAA	p.E1776K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1776	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity	p.E1776K(1)		ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GTGTCCTGTTCCTTCTTCAGC	0.507000													6	146					0	0	0.00198382	0	0
MYH2	4620	broad.mit.edu	37	17	10433048	10433048	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:10433048G>A	uc010coi.2	-	24	3078	c.2950C>T	c.(2950-2952)CTC>TTC	p.L984F	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.L984F|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	984	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCTTCTGTGAGGTTTTTCACC	0.468000													7	158					0	0	0.000157383	0	0
KIAA0100	9703	broad.mit.edu	37	17	26961756	26961756	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:26961756G>A	uc002hbu.2	-	16	2948	c.2849C>T	c.(2848-2850)TCC>TTC	p.S950F		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	950						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					GAGACGACGGGAACGCTGGAT	0.542000													5	57					0	0	0.000602214	0	0
SUPT6H	6830	broad.mit.edu	37	17	27028564	27028564	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:27028564C>T	uc002hby.2	+	37	5192	c.5102C>T	c.(5101-5103)TCC>TTC	p.S1701F	SUPT6H_uc010crt.2_Missense_Mutation_p.S1701F	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1701					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CCTCGGCCCTCCCCCAGCCCC	0.627000													4	50					0	0	0.00024832	0	0
TMIGD1	388364	broad.mit.edu	37	17	28652031	28652031	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:28652031T>C	uc002hfa.1	-	4	516	c.443A>G	c.(442-444)AAC>AGC	p.N148S	TMIGD1_uc010csh.1_Missense_Mutation_p.N148S	NM_206832	NP_996663	Q6UXZ0	TMIG1_HUMAN	transmembrane and immunoglobulin domain	148	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane					0						AGCCTGGGGGTTGGCTTTCAC	0.443000													8	134					0	0	0.000442599	0	0
NT5C3L	115024	broad.mit.edu	37	17	39987068	39987068	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:39987068G>A	uc002hyc.3	-	6	500	c.491C>T	c.(490-492)TCC>TTC	p.S164F	NT5C3L_uc002hxx.3_Missense_Mutation_p.S29F|NT5C3L_uc010wfu.1_Missense_Mutation_p.S29F|NT5C3L_uc002hyb.3_Missense_Mutation_p.S87F|NT5C3L_uc002hyd.3_Missense_Mutation_p.S87F|NT5C3L_uc002hxy.3_Missense_Mutation_p.S122F|NT5C3L_uc002hxz.3_Missense_Mutation_p.S87F|NT5C3L_uc002hya.3_Missense_Mutation_p.S122F	NM_052935	NP_443167	C9JKC4	C9JKC4_HUMAN	5'-nucleotidase, cytosolic III-like	130						cytoplasm	5'-nucleotidase activity|magnesium ion binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.15)		CATTGCATTGGACTCTCTAAC	0.443000													7	132					0	0	0.000442599	0	0
MEOX1	4222	broad.mit.edu	37	17	41738457	41738457	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:41738457G>A	uc002idz.2	-	1	475	c.446C>T	c.(445-447)TCC>TTC	p.S149F	MEOX1_uc002iea.2_Missense_Mutation_p.S149F|MEOX1_uc002ieb.2_Missense_Mutation_p.S34F	NM_004527	NP_004518	P50221	MEOX1_HUMAN	mesenchyme homeobox 1 isoform 1	149						nucleus	sequence-specific DNA binding				0		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0753)		TCTCCGCCTGGATGATTTCTT	0.438000													8	169					0	0	0.000978159	0	0
SCN4A	6329	broad.mit.edu	37	17	62028849	62028849	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:62028849C>G	uc002jds.1	-	14	2865	c.2788G>C	c.(2788-2790)GAG>CAG	p.E930Q		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	930					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	AGGTCGGACTCCTCGGAGGCG	0.502000													3	50					0	0	6.4e-05	0	0
C17orf77	146723	broad.mit.edu	37	17	72588229	72588229	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:72588229C>T	uc002jla.1	+	3	406	c.44C>T	c.(43-45)CCT>CTT	p.P15L	CD300LD_uc002jkz.2_Intron	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	15						extracellular region					0						TGTCTCCTTCCTGAGAACAGA	0.483000													6	136					0	0	0.00198382	0	0
SLC25A19	60386	broad.mit.edu	37	17	73269592	73269592	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:73269592G>A	uc002jns.3	-	6	1813	c.903C>T	c.(901-903)TTC>TTT	p.F301F	SLC25A19_uc010dge.2_Silent_p.F244F|SLC25A19_uc002jnv.3_Silent_p.F301F|SLC25A19_uc002jnu.3_Silent_p.F301F|SLC25A19_uc002jnw.3_Silent_p.F301F|SLC25A19_uc002jnt.3_Silent_p.F301F	NM_021734	NP_068380	Q9HC21	TPC_HUMAN	solute carrier family 25, member 19	301	Solcar 3.|Helical; Name=6; (Potential).					integral to membrane|mitochondrial inner membrane	binding|deoxynucleotide transmembrane transporter activity			ovary(1)	1	all_cancers(13;5.98e-08)|all_epithelial(9;1.16e-08)|Breast(9;3.1e-08)		all cancers(21;6.82e-07)|Epithelial(20;6.86e-06)			ATTCATACGAGAAGAACATGA	0.582000													5	48					0	0	0.00198382	0	0
QRICH2	84074	broad.mit.edu	37	17	74287761	74287761	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:74287761C>T	uc002jrd.1	-	4	2729	c.2549G>A	c.(2548-2550)AGA>AAA	p.R850K	QRICH2_uc010wsz.1_Missense_Mutation_p.R776K|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	850							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GTATTGTTCTCTGCCAGGAGG	0.478000													5	75					0	0	0.00198382	0	0
HEXDC	284004	broad.mit.edu	37	17	80395108	80395108	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr17:80395108G>A	uc002kew.2	+	7	819	c.768G>A	c.(766-768)AAG>AAA	p.K256K	HEXDC_uc002kev.3_Silent_p.K256K|HEXDC_uc010diq.2_Silent_p.K256K|HEXDC_uc010wvm.1_RNA|HEXDC_uc010wvn.1_Silent_p.K19K			Q8WVB3	HEXDC_HUMAN	SubName: Full=Hexosaminidase (Glycosyl hydrolase family 20, catalytic domain) containing, isoform CRA_c; SubName: Full=Hexosaminidase D;	256					carbohydrate metabolic process	cytoplasm|nucleus	beta-N-acetylhexosaminidase activity|cation binding			ovary(1)|skin(1)	2	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			GTGCCTTCAAGGGTGCCACGG	0.672000													10	99					0	0	0.000673444	0	0
DSG4	147409	broad.mit.edu	37	18	28972189	28972189	+	Silent	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr18:28972189A>G	uc002kwq.2	+	8	1026	c.891A>G	c.(889-891)GAA>GAG	p.E297E	DSG4_uc002kwr.2_Silent_p.E297E	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	297	Cadherin 3.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ATCTTGATGAAGAAGGCACTG	0.358000													3	90					0	0	6.4e-05	0	0
C18orf26	284254	broad.mit.edu	37	18	52262289	52262289	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr18:52262289C>T	uc002lfq.1	+	2	301	c.255C>T	c.(253-255)ATC>ATT	p.I85I	C18orf26_uc002lfp.1_Intron	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	85						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		ACCCAGGAATCCTTGCACATT	0.453000													6	137					0	0	0.00116845	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324064	61324064	+	Splice_Site	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr18:61324064C>T	uc002ljg.2	-	6	794	c.768_splice	c.e6+1	p.K256_splice	SERPINB3_uc002lji.2_Splice_Site_p.K256_splice|SERPINB3_uc010dqa.2_Intron			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;						immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CAAGTTCTTACCTTCTGGAGA	0.428000													6	137					0	0	0.000274275	0	0
ZNF516	9658	broad.mit.edu	37	18	74091513	74091513	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr18:74091513G>A	uc010dqx.1	-	3	2792	c.2557C>T	c.(2557-2559)CCC>TCC	p.P853S	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	853					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		ACTCCCAGGGGAGAAGAGCCA	0.632000													5	94					0	0	0.000602214	0	0
EMR1	2015	broad.mit.edu	37	19	6901965	6901965	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr19:6901965C>T	uc002mfw.2	+	6	632	c.594C>T	c.(592-594)TTC>TTT	p.F198F	EMR1_uc010dvc.2_Silent_p.F198F|EMR1_uc010dvb.2_Silent_p.F146F|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Intron	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	198	Extracellular (Potential).|EGF-like 4; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					ACTCTTGTTTCTGCAACCCAG	0.483000													6	185					0	0	0.000442599	0	0
MUC16	94025	broad.mit.edu	37	19	9059164	9059164	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr19:9059164C>T	uc002mkp.2	-	3	28486	c.28282G>A	c.(28282-28284)GAA>AAA	p.E9428K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9430	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTTTTTTTCCACAGACAGC	0.502000													8	78					0	0	0.000442599	0	0
ZNF227	7770	broad.mit.edu	37	19	44740006	44740006	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr19:44740006C>G	uc002oyu.2	+	6	1628	c.1423C>G	c.(1423-1425)CGT>GGT	p.R475G	ZNF227_uc010xwu.1_Missense_Mutation_p.R424G|ZNF227_uc002oyv.2_Missense_Mutation_p.R475G|ZNF227_uc010xwv.1_Missense_Mutation_p.R424G|ZNF227_uc010xww.1_Missense_Mutation_p.R396G|ZNF227_uc002oyw.2_Missense_Mutation_p.R447G|ZNF227_uc010ejh.2_Missense_Mutation_p.R468G|ZNF235_uc002oyx.1_Intron	NM_182490	NP_872296	Q86WZ6	ZN227_HUMAN	zinc finger protein 227	475	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0435)				AGGCTTTACCCGTAATACAGA	0.458000													3	74					0	0	0.00024832	0	0
CEACAM20	125931	broad.mit.edu	37	19	45026930	45026930	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr19:45026930G>A	uc010ejn.1	-	4	500	c.484C>T	c.(484-486)CCT>TCT	p.P162S	CEACAM20_uc010ejo.1_Missense_Mutation_p.P162S|CEACAM20_uc010ejp.1_Missense_Mutation_p.P162S|CEACAM20_uc010ejq.1_Missense_Mutation_p.P162S	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	162	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				ATTTCAACAGGATCAGGACCA	0.443000													8	167					0	0	0.000274275	0	0
CBLC	23624	broad.mit.edu	37	19	45303658	45303658	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr19:45303658C>T	uc002ozs.2	+	10	1446	c.1383C>T	c.(1381-1383)TCC>TCT	p.S461S	CBLC_uc010ejt.2_Silent_p.S415S	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	461					cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				AGGGGAACTCCCCTCCAGCTG	0.478000			M		AML						OREG0025543	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	166					0	0	0.000274275	0	0
NUP62	23636	broad.mit.edu	37	19	50411800	50411800	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr19:50411800T>C	uc002pqx.2	-	2	1369	c.1265A>G	c.(1264-1266)TAC>TGC	p.Y422C	IL4I1_uc002pqv.1_Intron|IL4I1_uc010eno.1_Intron|IL4I1_uc002pqw.1_Intron|IL4I1_uc002pqu.1_Intron|NUP62_uc002pqy.2_Missense_Mutation_p.Y422C|NUP62_uc002pqz.2_Missense_Mutation_p.Y422C|NUP62_uc002pra.2_Missense_Mutation_p.Y422C|NUP62_uc002prb.2_Missense_Mutation_p.Y422C|NUP62_uc002prc.2_Missense_Mutation_p.Y346C	NM_153719	NP_714941	P37198	NUP62_HUMAN	nucleoporin 62kDa	422	Potential.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding				0		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GTGCTGCAGGTAGATGGTCCC	0.577000													3	64					0	0	6.4e-05	0	0
ZNF578	147660	broad.mit.edu	37	19	53014400	53014400	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr19:53014400G>A	uc002pzp.3	+	6	1010	c.766G>A	c.(766-768)GAA>AAA	p.E256K		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	31					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		CCATTTAGGAGAAAAACAATA	0.363000													5	115					0	0	0.00116845	0	0
MYT1L	23040	broad.mit.edu	37	2	1843014	1843014	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:1843014G>A	uc002qxe.2	-	21	3814	c.2987C>T	c.(2986-2988)TCC>TTC	p.S996F	MYT1L_uc002qxd.2_Missense_Mutation_p.S994F|MYT1L_uc010ewk.2_5'UTR	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	996					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CGACTTCCAGGAGAACTGGGA	0.647000													5	32					0	0	0.000602214	0	0
MYT1L	23040	broad.mit.edu	37	2	1926775	1926775	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:1926775C>T	uc002qxe.2	-	10	1593	c.766G>A	c.(766-768)GAT>AAT	p.D256N	MYT1L_uc002qxd.2_Missense_Mutation_p.D256N|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	256					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CTAACAACATCACTGTCTAAG	0.413000													7	128					0	0	0.00198382	0	0
APOB	338	broad.mit.edu	37	2	21228104	21228104	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:21228104G>A	uc002red.2	-	26	11764	c.11636C>T	c.(11635-11637)TCC>TTC	p.S3879F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3879					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGCTTGAAAGGAAGGAATGAC	0.458000													17	425					0	0	0.000566183	0	0
APOB	338	broad.mit.edu	37	2	21234360	21234360	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:21234360C>T	uc002red.2	-	26	5508	c.5380G>A	c.(5380-5382)GTA>ATA	p.V1794I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1794					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAAGTAGTTACCAGAGAATAG	0.413000													23	671					0	0	0.000720815	0	0
APOB	338	broad.mit.edu	37	2	21256221	21256221	+	Silent	SNP	G	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:21256221G>C	uc002red.2	-	9	1202	c.1074C>G	c.(1072-1074)CTC>CTG	p.L358L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	358	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTTCATCACTGAGGCCTCTCA	0.413000													4	396					0	0	0.00198382	0	0
FNDC4	64838	broad.mit.edu	37	2	27716322	27716322	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:27716322C>T	uc002rkx.2	-	5	884	c.478G>A	c.(478-480)GAT>AAT	p.D160N		NM_022823	NP_073734	Q9H6D8	FNDC4_HUMAN	fibronectin type III domain containing 4	160	Extracellular (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(172;0.155)					CGCTCTCCATCCAGACCTTCC	0.567000													7	154					0	0	0.000157383	0	0
BIRC6	57448	broad.mit.edu	37	2	32724699	32724699	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:32724699T>G	uc010ezu.2	+	46	8688	c.8554T>G	c.(8554-8556)TCA>GCA	p.S2852A		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2852					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TGAAGTCGTTTCAGTTAGTAC	0.413000													3	84					0	0	6.4e-05	0	0
BIRC6	57448	broad.mit.edu	37	2	32800289	32800289	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:32800289C>T	uc010ezu.2	+	66	13345	c.13211C>T	c.(13210-13212)TCT>TTT	p.S4404F		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4404					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GCCATTGCTTCTTGTGCTGCC	0.463000													12	208					0	0	0.00185496	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43933474	43933475	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:43933474_43933475CC>TT	uc010yny.1	+	10	1823_1824	c.1740_1741CC>TT	c.(1738-1743)ACCCTT>ACTTTT	p.L581F	PLEKHH2_uc002rte.3_Missense_Mutation_p.L581F|PLEKHH2_uc002rtf.3_Missense_Mutation_p.L580F	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	581						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CTGCTGCAACCCTTTCCTATAC	0.337000													10	493					0	0	6.4e-05	0	0
ABCG5	64240	broad.mit.edu	37	2	44055247	44055247	+	Missense_Mutation	SNP	G	A	A	rs145505499		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:44055247G>A	uc002rtn.2	-	5	649	c.509C>T	c.(508-510)GCC>GTC	p.A170V	ABCG5_uc002rtm.2_5'UTR|ABCG5_uc002rto.2_Missense_Mutation_p.A89V|ABCG5_uc002rtp.2_5'UTR	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	170	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TGCCATGACGGCCTCCACCTG	0.582000													7	163					0	0	0.000157383	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69046282	69046282	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:69046282C>T	uc002seu.2	+	9	1392	c.1028C>T	c.(1027-1029)ACT>ATT	p.T343I	ARHGAP25_uc010fdg.2_Missense_Mutation_p.T344I|ARHGAP25_uc010yql.1_Missense_Mutation_p.T304I|ARHGAP25_uc002sev.2_Missense_Mutation_p.T337I|ARHGAP25_uc002sew.2_Missense_Mutation_p.T336I|ARHGAP25_uc002sex.2_Missense_Mutation_p.T337I|ARHGAP25_uc002sey.2_Missense_Mutation_p.T70I	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	343	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						AGAGTGATGACTATGATGATC	0.507000													6	216					0	0	0.000157383	0	0
SH2D6	284948	broad.mit.edu	37	2	85662803	85662803	+	Silent	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:85662803C>G	uc002spq.2	+	3	428	c.267C>G	c.(265-267)ACC>ACG	p.T89T	SH2D6_uc002spo.2_RNA|SH2D6_uc002spp.2_RNA	NM_198482	NP_940884	Q7Z4S9	SH2D6_HUMAN	SH2 domain containing 6	89	SH2.									central_nervous_system(1)	1						GGGCCTATACCGTGCGCCCCA	0.652000													3	24					0	0	6.4e-05	0	0
THNSL2	55258	broad.mit.edu	37	2	88484973	88484973	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:88484973C>G	uc002ssz.3	+	8	1357	c.1204C>G	c.(1204-1206)CAG>GAG	p.Q402E	THNSL2_uc002ssv.2_Intron|THNSL2_uc002ssw.3_Intron|THNSL2_uc002ssx.3_Intron|THNSL2_uc002sta.3_Intron|THNSL2_uc002ssy.3_Missense_Mutation_p.Q402E|THNSL2_uc010fhe.2_Intron	NM_018271	NP_060741	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2	402					threonine biosynthetic process		threonine synthase activity			ovary(1)	1						CTACCATTACCAGCAGATAGA	0.592000													2	3					0	0	6.4e-05	0	0
IL1B	3553	broad.mit.edu	37	2	113588929	113588929	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:113588929C>T	uc002tii.1	-	6	624	c.537G>A	c.(535-537)AAG>AAA	p.K179K	IL1B_uc002tih.1_Silent_p.K148K	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	179					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	GATTCTTTTCCTTGAGGCCCA	0.468000													6	118					0	0	0.00116845	0	0
DPP10	57628	broad.mit.edu	37	2	116594124	116594124	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:116594124G>A	uc002tla.1	+	23	2549	c.2092G>A	c.(2092-2094)GAA>AAA	p.E698K	DPP10_uc002tlb.1_Missense_Mutation_p.E648K|DPP10_uc002tlc.1_Missense_Mutation_p.E694K|DPP10_uc002tle.2_Missense_Mutation_p.E702K|DPP10_uc002tlf.1_Missense_Mutation_p.E691K	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	698	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GCCATCTAAGGAAGAAAGCAC	0.328000													7	195					0	0	0.00198382	0	0
CYP27C1	339761	broad.mit.edu	37	2	127961021	127961021	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:127961021G>A	uc002tod.2	-	2	236	c.105C>T	c.(103-105)CTC>CTT	p.L35L		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	35						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		GGCTCCTGAGGAGGTAGATTC	0.418000													7	119					0	0	0.000274275	0	0
KCNH7	90134	broad.mit.edu	37	2	163374572	163374572	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:163374572G>A	uc002uch.1	-	4	772	c.560C>T	c.(559-561)TCA>TTA	p.S187L	KCNH7_uc002uci.2_Missense_Mutation_p.S187L	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	187	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GTGTTTAGATGAATCGATGAC	0.423000													9	101					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179438407	179438407	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:179438407C>T	uc010zfg.1	-	275	64972	c.64748G>A	c.(64747-64749)GGA>GAA	p.G21583E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G15278E|TTN_uc010zfi.1_Missense_Mutation_p.G15211E|TTN_uc010zfj.1_Missense_Mutation_p.G15086E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22510							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGGCACCTCCATCATCCAG	0.443000													8	222					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179481311	179481311	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:179481311C>T	uc010zfg.1	-	206	40727	c.40503G>A	c.(40501-40503)AAG>AAA	p.K13501K	TTN_uc010zfh.1_Silent_p.K7196K|TTN_uc010zfi.1_Silent_p.K7129K|TTN_uc010zfj.1_Silent_p.K7004K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14428							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTACTGAGTCCTTGGTTATAT	0.408000													4	64					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179613520	179613520	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:179613520G>A	uc002unb.2	-	46	13831	c.13607C>T	c.(13606-13608)TCC>TTC	p.S4536F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTTTGAGAGGAAAGCAGCTT	0.323000													6	102					0	0	0.00198382	0	0
FAM117B	150864	broad.mit.edu	37	2	203630271	203630271	+	Silent	SNP	C	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:203630271C>A	uc010zhx.1	+	8	1564	c.1554C>A	c.(1552-1554)CTC>CTA	p.L518L		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	518										ovary(1)	1						TCAGCATCCTCAAGCCACTCC	0.493000													11	402					0.000422831	0.00337472	0.000422831	1	0
PRKAG3	53632	broad.mit.edu	37	2	219696074	219696074	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:219696074C>T	uc002vjb.1	-	2	77	c.58G>A	c.(58-60)GGT>AGT	p.G20S	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Missense_Mutation_p.G20S|PRKAG3_uc010zko.1_Missense_Mutation_p.G20S	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	20					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGCTCAGAACCCCCAAGGCTG	0.557000													3	7					0	0	6.4e-05	0	0
SCG2	7857	broad.mit.edu	37	2	224462455	224462455	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:224462455G>A	uc002vnm.2	-	2	1679	c.1546C>T	c.(1546-1548)CCT>TCT	p.P516S		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	516					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		ATGATCTCAGGGTATTTAACT	0.433000													5	73					0	0	0.000602214	0	0
COL4A3	1285	broad.mit.edu	37	2	228149036	228149036	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:228149036G>A	uc002vom.1	+	34	3018	c.2856G>A	c.(2854-2856)GGG>GGA	p.G952G	COL4A3_uc002von.1_Silent_p.G952G|COL4A3_uc002voo.1_Silent_p.G952G|COL4A3_uc002vop.1_Silent_p.G952G|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	952	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		ACGTAATAGGGGACAAAGGAG	0.353000													5	59					0	0	0.000157383	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545731	234545731	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr2:234545731C>T	uc002vur.2	+	1	609	c.563C>T	c.(562-564)TCC>TTC	p.S188F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.S188F	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	188					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		GCTCCTCTTTCCTATGTCCCC	0.463000													8	141					0	0	0.000157383	0	0
CHGB	1114	broad.mit.edu	37	20	5903887	5903887	+	Missense_Mutation	SNP	G	A	A	rs144998822		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr20:5903887G>A	uc002wmg.2	+	4	1403	c.1097G>A	c.(1096-1098)GGA>GAA	p.G366E	CHGB_uc010zqz.1_Missense_Mutation_p.G49E	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	366						extracellular region	hormone activity	p.G366E(1)		breast(3)|skin(2)|ovary(1)	6						AGGGGCAGAGGAAGTGAAGAA	0.517000													7	93					0	0	0.00198382	0	0
PLCB4	5332	broad.mit.edu	37	20	9424652	9424652	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr20:9424652G>A	uc002wnf.2	+	29	2889	c.2753G>A	c.(2752-2754)AGG>AAG	p.R918K	PLCB4_uc010gbw.1_Missense_Mutation_p.R918K|PLCB4_uc010gbx.2_Missense_Mutation_p.R930K|PLCB4_uc002wne.2_Missense_Mutation_p.R918K|PLCB4_uc002wnh.2_Missense_Mutation_p.R765K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	918					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CCTCAAGTAAGGATAGAAGAC	0.299000													6	106					0	0	0.00198382	0	0
CHD6	84181	broad.mit.edu	37	20	40141535	40141535	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr20:40141535C>T	uc002xka.1	-	5	980	c.802G>A	c.(802-804)GCT>ACT	p.A268T	CHD6_uc002xkd.2_Missense_Mutation_p.A246T|CHD6_uc002xkc.2_Missense_Mutation_p.A303T	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	268					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GTTCGACCAGCTCCAAGAACA	0.512000													9	252					0	0	0.00136819	0	0
ZNF217	7764	broad.mit.edu	37	20	52198287	52198287	+	Missense_Mutation	SNP	G	A	A	rs139287977		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr20:52198287G>A	uc002xwq.3	-	1	1350	c.1079C>T	c.(1078-1080)TCC>TTC	p.S360F	ZNF217_uc010gij.1_Missense_Mutation_p.S352F	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	360					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			CGCGTCCACGGAGGGCGCTTC	0.562000													6	62					0	0	0.000157383	0	0
SLC17A9	63910	broad.mit.edu	37	20	61595602	61595602	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr20:61595602C>T	uc002yea.3	+	8	1029	c.845C>T	c.(844-846)CCT>CTT	p.P282L	SLC17A9_uc002ydz.3_Missense_Mutation_p.P276L|SLC17A9_uc011aap.1_Missense_Mutation_p.P302L	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	282	Helical; (Potential).				exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						AACGTGGTTCCTTGGTTGGTG	0.607000													12	152					0	0	0.000308642	0	0
IFNAR2	3455	broad.mit.edu	37	21	34621123	34621123	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr21:34621123C>T	uc002yrd.2	+	6	832	c.504C>T	c.(502-504)CTC>CTT	p.L168L	IFNAR2_uc002yrb.2_Silent_p.L168L|IFNAR2_uc002yrc.2_Silent_p.L168L|IFNAR2_uc002yre.2_Silent_p.L168L|IFNAR2_uc002yrf.2_Silent_p.L168L|IFNAR2_uc002yrg.2_Silent_p.L37L|IL10RB_uc002yrh.1_Silent_p.L18L|IL10RB_uc002yri.1_5'UTR	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	168	Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	ATTTATCTCTCGTCATTGAAG	0.388000													9	141					0	0	0.000442599	0	0
DONSON	29980	broad.mit.edu	37	21	34951792	34951792	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr21:34951792A>G	uc002ysk.2	-	9	1494	c.1427T>C	c.(1426-1428)ATC>ACC	p.I476T	DONSON_uc002ysi.1_Missense_Mutation_p.I236T|DONSON_uc002ysj.2_Missense_Mutation_p.I109T|DONSON_uc002ysl.2_Missense_Mutation_p.I109T|DONSON_uc010gme.2_Missense_Mutation_p.I449T|DONSON_uc002ysm.2_Missense_Mutation_p.I476T	NM_017613	NP_060083	Q9NYP3	DONS_HUMAN	downstream neighbor of SON	476					multicellular organismal development	nucleus				ovary(1)|central_nervous_system(1)	2						ATGAGGCATGATAGGACCTGT	0.428000													3	84					0	0	6.4e-05	0	0
MICAL3	57553	broad.mit.edu	37	22	18301214	18301214	+	Missense_Mutation	SNP	G	A	A	rs143411730	by1000genomes	TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:18301214G>A	uc002zng.3	-	26	4566	c.4213C>T	c.(4213-4215)CGG>TGG	p.R1405W	MICAL3_uc011agl.1_Missense_Mutation_p.R1321W|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1405	Pro-rich.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GACGGGGACCGGGGGGTTGGC	0.667000													13	81					0	0	0.00074312	0	0
Unknown	0	broad.mit.edu	37	22	18844756	18844756	+	RNA	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:18844756C>G	uc002zoe.2	+	4		c.2010C>G			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACTTTTCACAGCCTCTGAG	0.562000													2	5					0	0	6.4e-05	0	0
CDC45	8318	broad.mit.edu	37	22	19470342	19470342	+	Missense_Mutation	SNP	G	A	A	rs150749750		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:19470342G>A	uc002zpr.2	+	4	410	c.334G>A	c.(334-336)GAT>AAT	p.D112N	CDC45_uc011agz.1_Missense_Mutation_p.D107N|CDC45_uc011aha.1_Missense_Mutation_p.D112N|CDC45_uc002zps.2_Missense_Mutation_p.D112N|CDC45_uc002zpt.2_Intron	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	112					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						TGTATACAACGATACCCAGGT	0.413000													41	170					0	0	0.000781405	0	0
LOC96610	96610	broad.mit.edu	37	22	22735544	22735544	+	RNA	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:22735544G>A	uc011aim.1	+	46		c.5340G>A								Parts of antibodies, mostly variable regions.												0						GCAGCTCCCAGGAACGGCCCC	0.577000													6	90					0	0	0.000274275	0	0
CRYBA4	1413	broad.mit.edu	37	22	27019282	27019282	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:27019282G>A	uc003acz.3	+	3	159	c.124G>A	c.(124-126)GAG>AAG	p.E42K		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	42	Beta/gamma crystallin 'Greek key' 1.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						GCTTGGCTTCGAGACTGTGCG	0.602000													6	51					0	0	0.000157383	0	0
NF2	4771	broad.mit.edu	37	22	30050714	30050714	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:30050714G>A	uc003age.3	+	5	959	c.516G>A	c.(514-516)AGG>AGA	p.R172R	NF2_uc003afy.3_Silent_p.R172R|NF2_uc003afz.3_Silent_p.R89R|NF2_uc003agf.3_Silent_p.R172R|NF2_uc003agb.3_Silent_p.R95R|NF2_uc003agc.3_Silent_p.R134R|NF2_uc003agd.3_Intron|NF2_uc003agg.3_Silent_p.R172R|NF2_uc003aga.3_Silent_p.R130R|NF2_uc003agh.3_Silent_p.R131R|NF2_uc003agi.3_Silent_p.R89R|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Silent_p.R134R	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	172	FERM.				actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.L127_D382del(1)|p.L140_P252del(1)|p.?(1)|p.R172fs*2(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						TTCCAAAAAGGGTAAGAGATT	0.423000			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				6	95					0	0	0.000157383	0	0
RFPL3	10738	broad.mit.edu	37	22	32756308	32756308	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:32756308G>A	uc003amj.2	+	2	648	c.443G>A	c.(442-444)CGA>CAA	p.R148Q	RFPL3_uc010gwn.2_Missense_Mutation_p.R119Q|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	148	B30.2/SPRY.						zinc ion binding			ovary(1)	1						AGGAGCGTCCGAAGTGGGCTC	0.537000													10	66					0	0	0.00136819	0	0
BPIL2	254240	broad.mit.edu	37	22	32828476	32828476	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:32828476C>T	uc003amn.2	-	10	1033	c.1033G>A	c.(1033-1035)GAG>AAG	p.E345K	BPIL2_uc010gwo.2_Intron|BPIL2_uc011amb.1_Missense_Mutation_p.E69K	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	345						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						ATGGGAGGCTCTGTGGCCATG	0.488000													13	88					0	0	0.000422831	0	0
SYN3	8224	broad.mit.edu	37	22	33402622	33402622	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:33402622G>A	uc003amx.2	-	1	185	c.26C>T	c.(25-27)TCT>TTT	p.S9F	SYN3_uc003amy.2_Missense_Mutation_p.S9F|SYN3_uc003amz.2_Missense_Mutation_p.S9F	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	9	A.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						GCTGCTGTCAGAGAGACGTCG	0.587000											OREG0003521	type=REGULATORY REGION|Gene=SYN3|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	16	82					0	0	0.000422831	0	0
GTSE1	51512	broad.mit.edu	37	22	46725256	46725256	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr22:46725256C>T	uc011aqy.1	+	11	2140	c.1928C>T	c.(1927-1929)GCT>GTT	p.A643V	GTSE1_uc011aqz.1_Missense_Mutation_p.A490V|GTSE1_uc003bhn.2_RNA|uc011ara.1_5'Flank|uc003bho.3_5'Flank	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	624					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		TGTACCCAGGCTCTTCTTGTA	0.522000													7	139					0	0	0.000157383	0	0
ZNF860	344787	broad.mit.edu	37	3	32031038	32031038	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:32031038G>A	uc011axg.1	+	2	1016	c.467G>A	c.(466-468)GGA>GAA	p.G156E		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	156					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GATCAGCTTGGATTAAGCTTT	0.413000													5	76					0	0	0.00116845	0	0
SCN11A	11280	broad.mit.edu	37	3	38949572	38949572	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:38949572G>A	uc011ays.1	-	10	1540	c.1341C>T	c.(1339-1341)TCC>TCT	p.S447S		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	447					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATGTTTCAAGGGAAGTAAGTG	0.388000													6	122					0	0	0.00198382	0	0
RAD54L2	23132	broad.mit.edu	37	3	51664320	51664320	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:51664320C>T	uc011bdt.1	+	5	639	c.514C>T	c.(514-516)CAA>TAA	p.Q172*	RAD54L2_uc003dbh.2_5'UTR|RAD54L2_uc011bdu.1_Intron|RAD54L2_uc003dbj.2_5'UTR	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	172						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		TGACGGTCCCCAACTGCCTCC	0.473000													5	89					0	0	0.000602214	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64619195	64619195	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:64619195G>A	uc003dmg.2	-	14	2160	c.2128C>T	c.(2128-2130)CCT>TCT	p.P710S	ADAMTS9_uc011bfo.1_Missense_Mutation_p.P682S|ADAMTS9_uc003dmh.1_Missense_Mutation_p.P539S|ADAMTS9_uc003dmk.1_Missense_Mutation_p.P710S	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	710	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TGGCCACAAGGAGTTCCATCT	0.507000													7	303					0	0	0.00198382	0	0
OR5H6	79295	broad.mit.edu	37	3	97983347	97983347	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:97983347C>T	uc003dsi.1	+	1	219	c.219C>T	c.(217-219)ATC>ATT	p.I73I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						ACCTTCATATCCCAATGTACT	0.418000													8	157					0	0	0.000274275	0	0
OR5K1	26339	broad.mit.edu	37	3	98188672	98188672	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:98188672C>T	uc003dsm.2	+	1	252	c.252C>T	c.(250-252)AAC>AAT	p.N84N		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						TGTTAGAGAACTTCTTTTCTG	0.433000													11	180					0	0	0.000673444	0	0
CEP97	79598	broad.mit.edu	37	3	101483923	101483923	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:101483923A>G	uc003dvk.1	+	11	2153	c.2126A>G	c.(2125-2127)GAA>GGA	p.E709G	CEP97_uc011bhf.1_Missense_Mutation_p.E650G|CEP97_uc003dvl.1_Missense_Mutation_p.E431G|CEP97_uc003dvm.1_Missense_Mutation_p.E547G	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	709	CEP110 binding.					centrosome|nucleus	protein binding			ovary(2)	2						TCTCTAACAGAACAAGTTCAT	0.383000													4	90					0	0	0.000602214	0	0
CBLB	868	broad.mit.edu	37	3	105422934	105422934	+	Silent	SNP	G	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:105422934G>C	uc003dwc.2	-	11	1813	c.1491C>G	c.(1489-1491)CTC>CTG	p.L497L	CBLB_uc011bhi.1_Silent_p.L519L|CBLB_uc003dwd.1_Silent_p.L497L|CBLB_uc003dwe.1_Silent_p.L497L	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	497	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GTGGGATCTGGAGTGGGTCAG	0.542000			Mis S		AML								5	138					0	0	0.000602214	0	0
MYH15	22989	broad.mit.edu	37	3	108110703	108110703	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:108110703C>T	uc003dxa.1	-	38	5451	c.5394G>A	c.(5392-5394)ATG>ATA	p.M1798I		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1798	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTGTCTGCTCCATATTTTCTC	0.453000													6	139					0	0	0.00116845	0	0
KIAA1407	57577	broad.mit.edu	37	3	113761579	113761579	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:113761579T>C	uc003eax.2	-	4	533	c.386A>G	c.(385-387)AAT>AGT	p.N129S	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Missense_Mutation_p.N107S|KIAA1407_uc011bip.1_Missense_Mutation_p.N116S	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	129										ovary(2)	2						CAAATGGCCATTGGCTTCCGG	0.348000													4	72					0	0	0.000602214	0	0
C3orf15	89876	broad.mit.edu	37	3	119434468	119434468	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:119434468C>T	uc003ede.3	+	6	637	c.560C>T	c.(559-561)TCT>TTT	p.S187F	C3orf15_uc003edc.2_Missense_Mutation_p.S187F|C3orf15_uc010hqy.1_Missense_Mutation_p.S187F|C3orf15_uc010hqz.2_Missense_Mutation_p.S125F|C3orf15_uc011bjd.1_Missense_Mutation_p.S61F|C3orf15_uc011bje.1_Missense_Mutation_p.S167F|C3orf15_uc010hra.1_5'UTR	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	187						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CCTTCAAAGTCTACTGTGGGC	0.413000													5	136					0	0	0.00116845	0	0
GPR156	165829	broad.mit.edu	37	3	119886704	119886704	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:119886704C>T	uc011bjf.1	-	9	1620	c.1620G>A	c.(1618-1620)CGG>CGA	p.R540R	GPR156_uc011bjg.1_Silent_p.R536R	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	540	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		CTGAACTAACCCGTGACCGCC	0.582000													9	145					0	0	0.000442599	0	0
HGD	3081	broad.mit.edu	37	3	120393815	120393815	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:120393815A>G	uc003edw.2	-	3	479	c.109T>C	c.(109-111)TAC>CAC	p.Y37H		NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	37					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TAGAGATTGTAGGGGCAGACC	0.468000													10	170					0	0	0.00136819	0	0
STXBP5L	9515	broad.mit.edu	37	3	120764363	120764363	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:120764363C>T	uc003eec.3	+	5	591	c.451C>T	c.(451-453)CTT>TTT	p.L151F	STXBP5L_uc011bji.1_Missense_Mutation_p.L151F	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	151	WD 2.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		ACTCCATTCTCTTAAATTTAA	0.358000													9	228					0	0	0.000673444	0	0
DTX3L	151636	broad.mit.edu	37	3	122287963	122287963	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:122287963C>T	uc003efk.2	+	3	1116	c.1027C>T	c.(1027-1029)CTC>TTC	p.L343F	DTX3L_uc010hrj.2_Intron	NM_138287	NP_612144	Q8TDB6	DTX3L_HUMAN	deltex 3-like	343					histone monoubiquitination|response to DNA damage stimulus	cytoplasm|nucleus	histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)	4				GBM - Glioblastoma multiforme(114;0.0459)		CGAATTAACTCTCCTTGGGAC	0.383000													11	193					0	0	0.00244969	0	0
KALRN	8997	broad.mit.edu	37	3	124044826	124044826	+	Splice_Site	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:124044826G>A	uc003ehg.2	+	7	1214	c.1087_splice	c.e7-1	p.N363_splice	KALRN_uc010hrv.1_Splice_Site_p.N363_splice|KALRN_uc003ehf.1_Splice_Site_p.N363_splice|KALRN_uc011bjy.1_Splice_Site_p.N363_splice	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TTTCTTTCCAGAATGCCTATG	0.517000													8	88					0	0	0.000157383	0	0
NEK11	79858	broad.mit.edu	37	3	130852771	130852771	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:130852771C>T	uc003eny.2	+	7	944	c.618C>T	c.(616-618)CAC>CAT	p.H206H	NEK11_uc003enx.2_Silent_p.H206H|NEK11_uc003eoa.2_Silent_p.H206H|NEK11_uc003enz.2_Silent_p.H24H|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_Silent_p.H58H|NEK11_uc011bll.1_Silent_p.H206H|NEK11_uc003enw.1_Silent_p.H206H|NEK11_uc011blm.1_Silent_p.H206H|NEK11_uc010hto.1_Silent_p.H58H	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	206	Protein kinase.				cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						CTCTGAAACACCAAGGCTATG	0.458000													6	93					0	0	0.00116845	0	0
TMEM108	66000	broad.mit.edu	37	3	133098655	133098655	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:133098655C>T	uc003eph.2	+	4	374	c.100C>T	c.(100-102)CCC>TCC	p.P34S	TMEM108_uc003epi.2_Missense_Mutation_p.P34S|TMEM108_uc003epj.1_Missense_Mutation_p.P34S|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_5'UTR	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	34	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						GGAACCATCTCCCAGGGAATC	0.537000													16	234					0	0	0.000958276	0	0
EPHB1	2047	broad.mit.edu	37	3	134670867	134670867	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:134670867G>A	uc003eqt.2	+	3	998	c.778G>A	c.(778-780)GAG>AAG	p.E260K	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Intron	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	260	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GCCTGGCTATGAGCCTGAGAA	0.562000													8	139					0	0	0.000274275	0	0
TMEM22	80723	broad.mit.edu	37	3	136573809	136573809	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:136573809C>T	uc003erf.3	+	2	721	c.507C>T	c.(505-507)TTC>TTT	p.F169F	TMEM22_uc003erg.3_Silent_p.F169F|TMEM22_uc010hub.2_Silent_p.F169F	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	169	DUF6 1.|Helical; (Potential).					Golgi apparatus|integral to membrane				ovary(1)	1						TACGACTCTTCTTTTATGGTG	0.408000													6	178					0	0	0.000274275	0	0
DZIP1L	199221	broad.mit.edu	37	3	137803020	137803020	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:137803020G>A	uc003erq.2	-	8	1501	c.1138C>T	c.(1138-1140)CAG>TAG	p.Q380*	DZIP1L_uc003err.1_Nonsense_Mutation_p.Q380*	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	380	Potential.					intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						GTGCTGATCTGGCACTGGGAC	0.602000													14	417					0	0	0.000308642	0	0
A4GNT	51146	broad.mit.edu	37	3	137849913	137849913	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:137849913C>T	uc003ers.2	-	2	388	c.186G>A	c.(184-186)GAG>GAA	p.E62E		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	62	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						AATGGGGTGGCTCCATTCTCT	0.522000													8	271					0	0	0.000274275	0	0
TXNDC6	347736	broad.mit.edu	37	3	138037049	138037049	+	Missense_Mutation	SNP	G	A	A	rs138728298		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:138037049G>A	uc003esg.2	-	4	236	c.208C>T	c.(208-210)CGT>TGT	p.R70C	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Intron|TXNDC6_uc003ese.1_Missense_Mutation_p.R48C	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	70	Thioredoxin.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						ACATCAAGACGATCTGCCTCT	0.473000													10	341					0	0	0.00244969	0	0
SUCNR1	56670	broad.mit.edu	37	3	151598433	151598433	+	Silent	SNP	C	T	T	rs145165680		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:151598433C>T	uc003ezf.1	+	3	201	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	34	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	GGATTGAGTTCGTTGTGGGAG	0.423000													10	185					0	0	0.00185496	0	0
BCHE	590	broad.mit.edu	37	3	165548644	165548644	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:165548644G>A	uc003fem.3	-	2	338	c.178C>T	c.(178-180)CCC>TCC	p.P60S	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	60					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	TGTGCATAGGGAATTCCAAGA	0.413000													5	48					0	0	0.000602214	0	0
TTC14	151613	broad.mit.edu	37	3	180327806	180327806	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:180327806C>T	uc003fkk.2	+	12	1921	c.1789C>T	c.(1789-1791)CCA>TCA	p.P597S	TTC14_uc003fkl.2_3'UTR|TTC14_uc003fkm.2_Intron	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	597							RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			GTCTGAAGATCCAAGAGATTT	0.358000													8	364					0	0	0.000978159	0	0
LAMP3	27074	broad.mit.edu	37	3	182870235	182870235	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:182870235C>T	uc003flh.3	-	3	1040	c.816G>A	c.(814-816)GGG>GGA	p.G272G		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	272	Lumenal (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			TGCCACAGTTCCCAGAGGCTT	0.448000													16	263					0	0	0.00121646	0	0
EHHADH	1962	broad.mit.edu	37	3	184936028	184936028	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr3:184936028C>T	uc003fpf.2	-	5	491	c.464G>A	c.(463-465)GGA>GAA	p.G155E	EHHADH_uc011brs.1_Missense_Mutation_p.G59E	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	155	Enoyl-CoA hydratase / isomerase.					peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	AATACGTCTTCCTGAAATAaa	0.353000													6	135					0	0	0.00198382	0	0
SLC34A2	10568	broad.mit.edu	37	4	25671354	25671354	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:25671354C>T	uc003grr.2	+	7	802	c.721C>T	c.(721-723)CTC>TTC	p.L241F	SLC34A2_uc003grs.2_Missense_Mutation_p.L240F|SLC34A2_uc010iev.2_Missense_Mutation_p.L240F	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	241	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				CACCCATTACCTCGAGATCAT	0.507000													7	170					0	0	0.000157383	0	0
GABRG1	2565	broad.mit.edu	37	4	46066470	46066470	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:46066470C>T	uc003gxb.2	-	5	765	c.613G>A	c.(613-615)GAA>AAA	p.E205K		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	205	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CTTGAAAATTCCAGTGGACAG	0.274000													6	177					0	0	0.000274275	0	0
CWH43	80157	broad.mit.edu	37	4	48996702	48996702	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:48996702C>T	uc003gyv.2	+	5	760	c.578C>T	c.(577-579)CCC>CTC	p.P193L	CWH43_uc011bzl.1_Missense_Mutation_p.P166L	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	193					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GCCTCTAGACCCAACTGGCTG	0.478000													5	96					0	0	0.000602214	0	0
CWH43	80157	broad.mit.edu	37	4	48996774	48996774	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:48996774C>T	uc003gyv.2	+	5	832	c.650C>T	c.(649-651)TCT>TTT	p.S217F	CWH43_uc011bzl.1_Missense_Mutation_p.S190F	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	217					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GGAGAAGTCTCTCTTGTTTCC	0.547000													5	84					0	0	0.000602214	0	0
CWH43	80157	broad.mit.edu	37	4	49040101	49040101	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:49040101G>A	uc003gyv.2	+	13	1889	c.1707G>A	c.(1705-1707)CTG>CTA	p.L569L	CWH43_uc011bzl.1_Silent_p.L542L	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	569					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						CAAAACTACTGAAAAGTAGCT	0.358000													11	266					0	0	0.00185496	0	0
KDR	3791	broad.mit.edu	37	4	55960994	55960995	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:55960994_55960995GG>AA	uc003has.2	-	21	3247_3248	c.2945_2946CC>TT	c.(2944-2946)TCC>TTT	p.S982F	KDR_uc003hat.1_Missense_Mutation_p.S982F	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	982	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CATCACTGAGGGACTTCTCCTC	0.515000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			6	117					0	0	6.4e-05	0	0
UGT2B4	7363	broad.mit.edu	37	4	70350992	70350992	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:70350992A>C	uc003hek.3	-	5	1291	c.1244T>G	c.(1243-1245)TTG>TGG	p.L415W	UGT2B4_uc011cap.1_Missense_Mutation_p.L279W|UGT2B4_uc003hel.3_Intron	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	415					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						GTGGAAGTCCAAACTAACAGC	0.423000													4	159					0	0	0.00116845	0	0
SEC31A	22872	broad.mit.edu	37	4	83742214	83742214	+	Silent	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:83742214C>G	uc003hnf.2	-	26	3623	c.3459G>C	c.(3457-3459)CTG>CTC	p.L1153L	SEC31A_uc003hnd.2_Silent_p.L322L|SEC31A_uc003hne.2_Silent_p.L902L|SEC31A_uc011ccl.1_Silent_p.L1099L|SEC31A_uc003hnl.2_Silent_p.L1000L|SEC31A_uc003hng.2_Silent_p.L1138L|SEC31A_uc003hnh.2_Silent_p.L1153L|SEC31A_uc003hni.2_Silent_p.L1039L|SEC31A_uc003hnj.2_Silent_p.L1114L|SEC31A_uc011ccm.1_Silent_p.L1133L|SEC31A_uc011ccn.1_Silent_p.L1138L|SEC31A_uc003hnk.2_Silent_p.L1114L|SEC31A_uc003hnm.2_Silent_p.L1153L	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	1153					COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				GTTTATCATACAGAAACTCCA	0.338000													4	264					0	0	0.00024832	0	0
ADH6	130	broad.mit.edu	37	4	100131343	100131343	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:100131343C>T	uc003hup.3	-	5	557	c.463G>A	c.(463-465)GAA>AAA	p.E155K	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.E155K|ADH6_uc011cef.1_Intron|ADH6_uc010ile.2_Missense_Mutation_p.E155K	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	155					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	ACTGAGATTTCCTTTATCACT	0.433000													7	83					0	0	0.00198382	0	0
TACR3	6870	broad.mit.edu	37	4	104511113	104511113	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:104511113G>A	uc003hxe.1	-	5	1267	c.1124C>T	c.(1123-1125)CCT>CTT	p.P375L		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	375	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TTTGATGAAAGGACACCAGCG	0.448000													4	39					0	0	0.00024832	0	0
ZNF827	152485	broad.mit.edu	37	4	146686318	146686318	+	Splice_Site	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:146686318C>T	uc003ikn.2	-	13	3101	c.3053_splice	c.e13-1	p.G1018_splice	ZNF827_uc003ikm.2_Splice_Site_p.G1018_splice|ZNF827_uc010iox.2_Splice_Site_p.G668_splice|ZNF827_uc003ikl.2_Splice_Site_p.G103_splice	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CATTCGAACCCTGCAAGGACC	0.552000													3	16					0	0	6.4e-05	0	0
SH3D19	152503	broad.mit.edu	37	4	152096098	152096098	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:152096098G>A	uc010ipl.1	-	7	1508	c.418C>T	c.(418-420)CCG>TCG	p.P140S	SH3D19_uc003imc.2_Missense_Mutation_p.P140S|SH3D19_uc003ime.2_Missense_Mutation_p.P140S|SH3D19_uc010ipm.2_Missense_Mutation_p.P140S	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	140	Pro-rich.				cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				AAAGGCCGCGGGGCAGGAGTT	0.557000													6	125					0	0	0.000157383	0	0
GRIA2	2891	broad.mit.edu	37	4	158257677	158257677	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:158257677C>T	uc003ipm.3	+	11	2081	c.1622C>T	c.(1621-1623)CCT>CTT	p.P541L	GRIA2_uc011cit.1_Missense_Mutation_p.P494L|GRIA2_uc003ipl.3_Missense_Mutation_p.P541L|GRIA2_uc003ipk.3_Missense_Mutation_p.P494L|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	541	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TTTCTTGATCCTTTAGCCTAT	0.453000													9	139					0	0	0.000673444	0	0
ANXA10	11199	broad.mit.edu	37	4	169105735	169105735	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:169105735T>G	uc003irm.2	+	11	954	c.809T>G	c.(808-810)GTA>GGA	p.V270G	ANXA10_uc003irn.2_Missense_Mutation_p.V142G	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	270	Annexin 4.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		AATAAAACTGTAATCAGGATT	0.393000													4	106					0	0	0.00024832	0	0
C4orf27	54969	broad.mit.edu	37	4	170671850	170671850	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:170671850G>A	uc003isl.3	-	3	300	c.235C>T	c.(235-237)CAA>TAA	p.Q79*		NM_017867	NP_060337	Q9NWY4	CD027_HUMAN	hypothetical protein LOC54969	79						nucleus				ovary(1)|pancreas(1)	2		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.018)|LUSC - Lung squamous cell carcinoma(193;0.116)		CCAACTAATTGAAGTCCAAGG	0.323000													8	176					0	0	0.000442599	0	0
GPM6A	2823	broad.mit.edu	37	4	176594859	176594859	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:176594859G>A	uc003iuf.2	-	3	1163	c.359C>T	c.(358-360)ACC>ATC	p.T120I	GPM6A_uc011ckj.1_Missense_Mutation_p.T113I|GPM6A_uc003iug.2_Missense_Mutation_p.T120I|GPM6A_uc003iuh.2_Missense_Mutation_p.T109I	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	120	Cytoplasmic (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		GCCACAAGTGGTGATTTTGAA	0.433000													5	38					0	0	0.00116845	0	0
DCTD	1635	broad.mit.edu	37	4	183836146	183836146	+	Silent	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr4:183836146A>G	uc003ivf.2	-	3	348	c.174T>C	c.(172-174)AAT>AAC	p.N58N	DCTD_uc003ivg.2_Silent_p.N69N|DCTD_uc010irw.2_Intron|DCTD_uc003ivh.2_Intron	NM_001921	NP_001912	P32321	DCTD_HUMAN	dCMP deaminase isoform b	58					nucleotide biosynthetic process|pyrimidine base metabolic process|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide metabolic process	cytosol	dCMP deaminase activity|zinc ion binding				0		all_lung(41;5.16e-14)|Lung NSC(41;1.33e-13)|Colorectal(36;0.00666)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.202)		all cancers(43;1.65e-24)|Epithelial(43;3.44e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.39e-10)|Colorectal(24;4.69e-07)|COAD - Colon adenocarcinoma(29;7.07e-05)|STAD - Stomach adenocarcinoma(60;0.000118)|GBM - Glioblastoma multiforme(59;0.000472)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.0419)		CACTGCACCCATTTGGCATCC	0.502000													4	74					0	0	0.000602214	0	0
PRDM9	56979	broad.mit.edu	37	5	23526485	23526485	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:23526485C>T	uc003jgo.2	+	11	1470	c.1288C>T	c.(1288-1290)CCC>TCC	p.P430S		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	430					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACCAGAGAATCCCTGCCCAGG	0.453000										HNSCC(3;0.000094)			5	79					0	0	0.00116845	0	0
C6	729	broad.mit.edu	37	5	41203209	41203209	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:41203209C>T	uc003jmk.2	-	2	334	c.124G>A	c.(124-126)GGA>AGA	p.G42R	C6_uc003jml.1_Missense_Mutation_p.G42R	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	42	TSP type-1 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding	p.G42E(1)		ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CTCTGGGTTCCAGAATTGCAA	0.493000													11	211					0	0	0.000978159	0	0
CMYA5	202333	broad.mit.edu	37	5	79026302	79026302	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:79026302C>T	uc003kgc.2	+	2	1786	c.1714C>T	c.(1714-1716)CCT>TCT	p.P572S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	572	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGCATCATCTCCTGAACATGT	0.433000													9	366					0	0	0.000978159	0	0
FAM81B	153643	broad.mit.edu	37	5	94749741	94749741	+	Silent	SNP	T	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:94749741T>G	uc003kla.1	+	4	430	c.384T>G	c.(382-384)CTT>CTG	p.L128L	FAM81B_uc010jbe.1_5'UTR	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	128										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		TAGCTTTCCTTCTTGAACAAG	0.507000													3	79					0	0	0.00024832	0	0
LECT2	3950	broad.mit.edu	37	5	135288572	135288572	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:135288572T>A	uc003lbe.1	-	2	332	c.131A>T	c.(130-132)TAC>TTC	p.Y44F		NM_002302	NP_002293	O14960	LECT2_HUMAN	leukocyte cell-derived chemotaxin 2 precursor	44					chemotaxis|skeletal system development	cytoplasm|extracellular space				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTGAGCAGAGTACTGTCCACA	0.517000													8	181					0	0	0.000442599	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502642	140502642	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:140502642C>T	uc003lip.1	+	1	1062	c.1062C>T	c.(1060-1062)TCC>TCT	p.S354S		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	354	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCACCAGCTCCATCCCAGAAA	0.448000													7	154					0	0	0.000157383	0	0
PCDHB16	57717	broad.mit.edu	37	5	140564127	140564127	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:140564127G>A	uc003liv.2	+	1	3148	c.1993G>A	c.(1993-1995)GGC>AGC	p.G665S	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	665	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGGTGGACGGCTTCTCCCA	0.701000													5	51					0	0	0.000602214	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712361	140712361	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:140712361T>C	uc003lji.1	+	1	2110	c.2110T>C	c.(2110-2112)TTC>CTC	p.F704L	PCDHGA1_uc011dan.1_Missense_Mutation_p.F704L	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	704	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCTGCGTCTTCCTGGCCTT	0.677000													6	113					0	0	0.000442599	0	0
GEMIN5	25929	broad.mit.edu	37	5	154275904	154275904	+	Splice_Site	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:154275904C>G	uc003lvx.3	-	24	3429	c.3346_splice	c.e24-1	p.G1116_splice	GEMIN5_uc011ddk.1_Splice_Site_p.G1115_splice	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5						ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ATCTCTGACCCTGGAACACGA	0.488000													3	42					0	0	0.00024832	0	0
HAVCR2	84868	broad.mit.edu	37	5	156533773	156533773	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:156533773C>T	uc003lwk.1	-	2	403	c.259G>A	c.(259-261)GAT>AAT	p.D87N	HAVCR2_uc003lwl.2_Missense_Mutation_p.D87N	NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	87	Ig-like V-type.|Extracellular (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGCGGAAATCCCCATTTAGC	0.488000													12	548					0	0	0.00185496	0	0
FAM71B	153745	broad.mit.edu	37	5	156590528	156590528	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:156590528G>A	uc003lwn.2	-	2	848	c.748C>T	c.(748-750)CCA>TCA	p.P250S		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	250	Ala-rich.					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTCGTGGATGGAGAAGCCGCA	0.582000													13	128					0	0	0.00136819	0	0
ITK	3702	broad.mit.edu	37	5	156671378	156671378	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:156671378C>T	uc003lwo.1	+	13	1421	c.1339C>T	c.(1339-1341)CTA>TTA	p.L447L		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	447	Protein kinase.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTCAGATTATCTACGCACCCA	0.577000			T	SYK	peripheral T-cell lymphoma								12	335					0	0	0.00244969	0	0
ITK	3702	broad.mit.edu	37	5	156676015	156676015	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:156676015G>A	uc003lwo.1	+	16	1871	c.1789G>A	c.(1789-1791)GAG>AAG	p.E597K		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	597	Protein kinase.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTGCTGGAAAGAGGTCAGTGG	0.522000			T	SYK	peripheral T-cell lymphoma								8	194					0	0	0.000157383	0	0
ATP10B	23120	broad.mit.edu	37	5	160097641	160097641	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr5:160097641C>T	uc003lym.1	-	7	1351	c.504G>A	c.(502-504)AAG>AAA	p.K168K	ATP10B_uc003lyp.2_Silent_p.K168K|ATP10B_uc011deg.1_Silent_p.K212K|ATP10B_uc003lyo.2_Silent_p.K140K	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	168	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CGCGCACATCCTTCCAGCACT	0.458000													5	114					0	0	0.00116845	0	0
SYCP2L	221711	broad.mit.edu	37	6	10956372	10956372	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:10956372G>A	uc003mzo.2	+	25	2356	c.2060G>A	c.(2059-2061)GGA>GAA	p.G687E	SYCP2L_uc010jow.2_Missense_Mutation_p.G307E	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	687						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			TTTCCAGAAGGAATTTCCACT	0.368000													4	33					0	0	0.000602214	0	0
SCAND3	114821	broad.mit.edu	37	6	28543645	28543645	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:28543645G>A	uc003nlo.2	-	3	1455	c.837C>T	c.(835-837)ATC>ATT	p.I279I		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	279					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTGTACAAGGATAACATCAA	0.378000													8	140					0	0	0.000673444	0	0
VARS	7407	broad.mit.edu	37	6	31747528	31747528	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:31747528G>A	uc003nxe.2	-	27	3568	c.3145C>T	c.(3145-3147)CTG>TTG	p.L1049L	C6orf27_uc011dog.1_5'Flank|C6orf27_uc003nxd.2_5'Flank|C6orf27_uc011doh.1_5'Flank|VARS_uc003nxf.1_5'UTR	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	1049					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CAAGTGTACAGGGTCTGGCGG	0.637000													7	269					0	0	0.000157383	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779062	31779062	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:31779062G>A	uc003nxh.2	-	2	871	c.688C>T	c.(688-690)CTG>TTG	p.L230L	HSPA1L_uc010jte.2_Silent_p.L230L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	230					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCCCCACCCAGGTGAGTGTCC	0.498000													6	344					0	0	0.00116845	0	0
NEU1	4758	broad.mit.edu	37	6	31829867	31829867	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:31829867C>T	uc003nxq.3	-	2	417	c.261G>A	c.(259-261)CGG>CGA	p.R87R	NEU1_uc010jtg.2_RNA|NEU1_uc003nxr.3_RNA|NEU1_uc010jth.2_Intron|NEU1_uc003nxs.3_Silent_p.R87R	NM_000434	NP_000425	Q99519	NEUR1_HUMAN	neuraminidase precursor	87						cytoplasmic membrane-bounded vesicle|lysosomal lumen|lysosomal membrane|plasma membrane	exo-alpha-sialidase activity|protein binding			ovary(1)	1					Oseltamivir(DB00198)|Zanamivir(DB00558)	GAAGAGTGCCCCGCGGAGTGG	0.607000													7	152					0	0	0.000157383	0	0
CFB	629	broad.mit.edu	37	6	31915258	31915258	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:31915258G>A	uc003nyj.3	+	4	896	c.618G>A	c.(616-618)CAG>CAA	p.Q206Q	CFB_uc011dor.1_Silent_p.Q708Q|CFB_uc003nyi.2_Silent_p.Q206Q	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	206	Sushi 3.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GAACGTGTCAGGAAGGTGGCT	0.617000													6	214					0	0	0.00198382	0	0
PPT2	9374	broad.mit.edu	37	6	32123668	32123668	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:32123668C>T	uc003nzx.2	+	5	1022	c.454C>T	c.(454-456)CTG>TTG	p.L152L	PRRT1_uc003nzu.2_5'Flank|uc003nzv.3_5'Flank|PPT2_uc003nzw.2_Silent_p.L158L|PPT2_uc011dpi.1_RNA|PPT2_uc003nzy.1_RNA|PPT2_uc003nzz.2_Silent_p.L152L|PPT2_uc003oaa.2_Silent_p.L152L|PPT2_uc010jtu.1_Silent_p.L152L	NM_005155	NP_005146	Q9UMR5	PPT2_HUMAN	palmitoyl-protein thioesterase 2 isoform a	152					protein modification process	lysosome	palmitoyl-(protein) hydrolase activity				0						CTTGAAGTGGCTGTTCCCCAC	0.532000													7	218					0	0	0.000274275	0	0
NOTCH4	4855	broad.mit.edu	37	6	32170211	32170211	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:32170211C>T	uc003obb.2	-	21	3536	c.3397G>A	c.(3397-3399)GGC>AGC	p.G1133S	NOTCH4_uc003oba.2_5'UTR|NOTCH4_uc011dpu.1_Intron|NOTCH4_uc011dpv.1_Intron	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1133	Extracellular (Potential).|EGF-like 29.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GGGCCACAGCCTTTAGGAGCT	0.647000													8	200					0	0	0.000978159	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33414468	33414468	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:33414468C>T	uc011dri.1	+	17	3894	c.3699C>T	c.(3697-3699)ATC>ATT	p.I1233I	SYNGAP1_uc010juy.2_Silent_p.I1202I|SYNGAP1_uc010juz.2_Silent_p.I945I	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	1233					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CCAGCAAAATCCTGATGCAGT	0.537000													6	37					0	0	0.00116845	0	0
ITPR3	3710	broad.mit.edu	37	6	33626807	33626807	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:33626807G>C	uc011drk.1	+	6	757	c.538G>C	c.(538-540)GGG>CGG	p.G180R		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	180	Cytoplasmic (Potential).|MIR 2.				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GGTGGTCGTGGGGGACAAGGT	0.622000													3	93					0	0	0.000602214	0	0
PLA2G7	7941	broad.mit.edu	37	6	46675832	46675832	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:46675832C>T	uc010jzf.2	-	10	1205	c.936G>A	c.(934-936)CAG>CAA	p.Q312Q	PLA2G7_uc010jzg.1_Intron	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	312					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			AAAAGAGGGGCTGAGGAATTC	0.338000													5	91					0	0	0.00198382	0	0
EYS	346007	broad.mit.edu	37	6	66115156	66115156	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:66115156C>T	uc011dxu.1	-	6	1505	c.967G>A	c.(967-969)GGA>AGA	p.G323R	EYS_uc003peq.2_Missense_Mutation_p.G323R|EYS_uc003per.1_Missense_Mutation_p.G323R	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	323					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						CTGGAAGATCCTTTTGGGCAT	0.378000													6	194					0	0	0.00198382	0	0
BCKDHB	594	broad.mit.edu	37	6	80838930	80838930	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:80838930C>T	uc003pjd.2	+	3	394	c.327C>T	c.(325-327)GGC>GGT	p.G109G	BCKDHB_uc003pje.2_Silent_p.G109G	NM_000056	NP_000047	P21953	ODBB_HUMAN	branched chain keto acid dehydrogenase E1 beta	109					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|carboxy-lyase activity|protein binding				0		all_cancers(76;1.38e-05)|Acute lymphoblastic leukemia(125;1.15e-05)|all_hematologic(105;0.00118)|all_epithelial(107;0.0149)		BRCA - Breast invasive adenocarcinoma(397;0.0291)		GCACTGTTGGCTTGCGAGACA	0.259000													7	182					0	0	0.000442599	0	0
PRDM1	639	broad.mit.edu	37	6	106554851	106554851	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:106554851G>A	uc003prd.2	+	7	2202	c.1968G>A	c.(1966-1968)GAG>GAA	p.E656E	PRDM1_uc003pre.2_Silent_p.E522E	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	656					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		ATTCTGGAGAGAAACCATACC	0.557000			D|N|Mis|F|S		DLBCL								5	84					0	0	0.00116845	0	0
FRK	2444	broad.mit.edu	37	6	116264247	116264247	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:116264247G>A	uc003pwi.1	-	7	1689	c.1242C>T	c.(1240-1242)TCC>TCT	p.S414S		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	414	Protein kinase.				negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		ACCATACATCGGACTTAATGC	0.393000													5	55					0	0	0.00116845	0	0
FRK	2444	broad.mit.edu	37	6	116289788	116289788	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:116289788G>A	uc003pwi.1	-	3	1028	c.581C>T	c.(580-582)ACC>ATC	p.T194I		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	194	SH2.				negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		ACTTGTCTTGGTGTAGTGGCT	0.388000													7	182					0	0	0.000274275	0	0
ROS1	6098	broad.mit.edu	37	6	117686846	117686846	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:117686846C>T	uc003pxp.1	-	19	3070	c.2871G>A	c.(2869-2871)AGG>AGA	p.R957R	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	957	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TTCCTTCAATCCTAAATGAAG	0.383000			T	GOPC|ROS1	glioblastoma|NSCLC								4	31					0	0	0.000602214	0	0
PDE7B	27115	broad.mit.edu	37	6	136468523	136468523	+	Silent	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:136468523A>G	uc003qgp.2	+	4	504	c.201A>G	c.(199-201)AAA>AAG	p.K67K	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Silent_p.K119K	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	67					signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	GCACCAAGAAAAAGGTGAAAA	0.403000													3	126					0	0	6.4e-05	0	0
UTRN	7402	broad.mit.edu	37	6	145161899	145161899	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:145161899C>T	uc003qkt.2	+	72	10293	c.10201C>T	c.(10201-10203)CCG>TCG	p.P3401S		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	3401					muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GCTGGCCCCACCGCACGACAC	0.507000													5	66					0	0	0.000157383	0	0
SYNE1	23345	broad.mit.edu	37	6	152476160	152476160	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:152476160C>T	uc010kiw.2	-	133	24598	c.23996G>A	c.(23995-23997)CGA>CAA	p.R7999Q	SYNE1_uc010kiv.2_Missense_Mutation_p.R2523Q|SYNE1_uc003qos.3_Missense_Mutation_p.R2523Q|SYNE1_uc003qot.3_Missense_Mutation_p.R7928Q|SYNE1_uc003qou.3_Missense_Mutation_p.R7999Q|SYNE1_uc003qop.3_Missense_Mutation_p.R161Q|SYNE1_uc011eez.1_Missense_Mutation_p.R201Q|SYNE1_uc003qoq.3_Missense_Mutation_p.R201Q|SYNE1_uc003qor.3_Missense_Mutation_p.R899Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7999	Spectrin 29.|Cytoplasmic (Potential).|HAT 12.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGCCACAATCGCCACGTCTC	0.473000										HNSCC(10;0.0054)			8	126					0	0	0.000673444	0	0
RBM16	22828	broad.mit.edu	37	6	155153965	155153965	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr6:155153965C>G	uc003qqa.2	+	21	3484	c.3252C>G	c.(3250-3252)CAC>CAG	p.H1084Q	TIAM2_uc003qqb.2_5'UTR|RBM16_uc011efj.1_Missense_Mutation_p.H1150Q|RBM16_uc011efk.1_Missense_Mutation_p.H1129Q|RBM16_uc003qpz.2_Missense_Mutation_p.H1084Q|RBM16_uc010kji.2_Intron	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	1084					mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		GAAGAGACCACTTTGGCTTTA	0.478000													3	50					0	0	6.4e-05	0	0
RAC1	5879	broad.mit.edu	37	7	6426892	6426892	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:6426892C>T	uc003spx.2	+	2	326	c.85C>T	c.(85-87)CCT>TCT	p.P29S	RAC1_uc003spw.2_Missense_Mutation_p.P29S	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	29					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CAATGCATTTCCTGGAGAATA	0.353000													6	150					0	0	0.00198382	0	0
ZNF12	7559	broad.mit.edu	37	7	6737362	6737362	+	Silent	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:6737362A>G	uc003sqt.1	-	3	650	c.96T>C	c.(94-96)ACT>ACC	p.T32T	ZNF12_uc011jxa.1_5'UTR|ZNF12_uc003sqs.1_Silent_p.T32T	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	32	KRAB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		CATCCCTGTAAGTTATCTTCT	0.473000													5	144					0	0	0.000602214	0	0
THSD7A	221981	broad.mit.edu	37	7	11485951	11485951	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:11485951C>T	uc003ssf.3	-	13	3053	c.2801G>A	c.(2800-2802)GGA>GAA	p.G934E		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	934	TSP type-1 9.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TTTACTTTTTCCTGTGGAAGA	0.333000										HNSCC(18;0.044)			8	191					0	0	0.000442599	0	0
CDCA7L	55536	broad.mit.edu	37	7	21946009	21946009	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:21946009C>T	uc010kuk.2	-	6	939	c.819G>A	c.(817-819)CGG>CGA	p.R273R	CDCA7L_uc003sve.3_Silent_p.R239R|CDCA7L_uc010kul.2_Silent_p.R227R|CDCA7L_uc003svf.3_Silent_p.R272R	NM_018719	NP_061189	Q96GN5	CDA7L_HUMAN	cell division cycle associated 7-like isoform 1	273					positive regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus					0						GCCGCGCACTCCGGGTTGGGT	0.527000													6	117					0	0	0.000157383	0	0
SCRN1	9805	broad.mit.edu	37	7	29980462	29980462	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:29980462G>A	uc010kvp.2	-	4	779	c.575C>T	c.(574-576)TCG>TTG	p.S192L	SCRN1_uc011jzy.1_Missense_Mutation_p.S124L|SCRN1_uc003tak.2_Missense_Mutation_p.S192L|SCRN1_uc011jzz.1_Missense_Mutation_p.S192L|SCRN1_uc011kaa.1_Missense_Mutation_p.S212L|SCRN1_uc011jzw.1_Intron|SCRN1_uc011jzx.1_Intron	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	192					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						AGTGGTGAGCGAAAGCTGACT	0.458000													7	141					0	0	0.000274275	0	0
TARP	445347	broad.mit.edu	37	7	38305101	38305101	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:38305101C>T	uc003tge.1	-	5	983	c.606G>A	c.(604-606)GGG>GGA	p.G202G	uc003tfz.1_Intron|TARP_uc003tgb.2_5'UTR|TARP_uc003tgc.1_5'UTR|TARP_uc003tgd.1_5'UTR|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						TCATGGTGTTCCCCTCCTGGG	0.413000													9	146					0	0	0.000978159	0	0
FIGNL1	63979	broad.mit.edu	37	7	50513369	50513369	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:50513369G>A	uc003tpc.2	-	4	1994	c.1617C>T	c.(1615-1617)ATC>ATT	p.I539I	FIGNL1_uc003tpb.2_Silent_p.I428I|FIGNL1_uc003tpd.2_Silent_p.I539I|FIGNL1_uc003tpe.2_Silent_p.I539I|FIGNL1_uc010kyy.2_Silent_p.I539I	NM_001042762	NP_001036227	Q6PIW4	FIGL1_HUMAN	fidgetin-like 1	539					ATP metabolic process|negative regulation of apoptosis|osteoblast differentiation|osteoblast proliferation|regulation of cell cycle	cytoplasm|nucleus	ATP binding|magnesium ion binding|nucleoside-triphosphatase activity			ovary(3)	3	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;3.73e-08)|all_hematologic(4;7.51e-06)				CCACCACTAGGATACGATCTT	0.433000													7	116					0	0	0.000673444	0	0
CACNA2D1	781	broad.mit.edu	37	7	81600036	81600036	+	Missense_Mutation	SNP	C	T	T	rs79127167		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:81600036C>T	uc003uhr.1	-	27	2415	c.2159G>A	c.(2158-2160)CGA>CAA	p.R720Q	CACNA2D1_uc011kgy.1_5'UTR	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	732	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CACAACAAATCGTGCTTTCAC	0.363000													9	149					0	0	0.00136819	0	0
LMTK2	22853	broad.mit.edu	37	7	97822165	97822165	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:97822165C>T	uc003upd.1	+	11	2681	c.2388C>T	c.(2386-2388)GTC>GTT	p.V796V		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	796					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					ATACAGATGTCATGCTCACAG	0.483000													7	120					0	0	0.00198382	0	0
SMURF1	57154	broad.mit.edu	37	7	98649925	98649925	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:98649925C>T	uc003upu.1	-	7	944	c.624G>A	c.(622-624)CAG>CAA	p.Q208Q	SMURF1_uc003upv.1_Silent_p.Q208Q|SMURF1_uc003upt.2_Silent_p.Q208Q	NM_020429	NP_065162	Q9HCE7	SMUF1_HUMAN	Smad ubiquitination regulatory factor 1 isoform	208					BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|lung(1)	4	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			GCCGCTGTGCCTGAAGTCTTT	0.592000													4	70					0	0	0.000602214	0	0
MOSPD3	64598	broad.mit.edu	37	7	100212656	100212656	+	Splice_Site	SNP	T	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:100212656T>G	uc003uvq.2	+	5	878	c.676_splice	c.e5+2	p.G226_splice	MOSPD3_uc003uvr.2_Splice_Site_p.G226_splice|MOSPD3_uc003uvs.2_Splice_Site_p.G226_splice|MOSPD3_uc003uvt.2_Splice_Site_p.G216_splice	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a							integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ACGTCTTGGGTGAGGACAGTA	0.627000													4	74					0	0	0.00198382	0	0
MLL5	55904	broad.mit.edu	37	7	104748158	104748158	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:104748158G>A	uc003vcm.2	+	22	3788	c.3254G>A	c.(3253-3255)AGG>AAG	p.R1085K	MLL5_uc010ljc.2_Missense_Mutation_p.R1085K|MLL5_uc010lje.1_RNA|MLL5_uc010ljf.1_RNA|MLL5_uc010ljg.2_5'UTR|MLL5_uc010ljh.1_5'Flank	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	1085					cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						TCCAACTTGAGGGACCTGACA	0.498000													4	24					0	0	0.00024832	0	0
CDHR3	222256	broad.mit.edu	37	7	105662778	105662778	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:105662778G>C	uc003vdl.3	+	14	2068	c.1960G>C	c.(1960-1962)GAT>CAT	p.D654H	CDHR3_uc003vdk.2_Intron|CDHR3_uc003vdm.3_Missense_Mutation_p.D641H|CDHR3_uc011klt.1_Missense_Mutation_p.D566H|CDHR3_uc003vdn.2_Intron	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	654	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CTACGTAACTGATGACAACTT	0.463000													3	120					0	0	0.00024832	0	0
COG5	10466	broad.mit.edu	37	7	107053028	107053028	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:107053028A>C	uc003ved.2	-	7	1206	c.681T>G	c.(679-681)AAT>AAG	p.N227K	COG5_uc003vec.2_Missense_Mutation_p.N227K|COG5_uc003vee.2_Missense_Mutation_p.N227K	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	227					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						AAAGTAGATCATTTTCTATCA	0.323000													4	73					0	0	0.00024832	0	0
SLC26A3	1811	broad.mit.edu	37	7	107431670	107431670	+	Silent	SNP	C	T	T	rs140184294		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:107431670C>T	uc003ver.2	-	5	604	c.393G>A	c.(391-393)CCG>CCA	p.P131P	SLC26A3_uc003ves.2_Silent_p.P96P	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	131	Helical; (Potential).		P -> R (in DIAR1).		excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TACTCAGAATCGGAAACGGAC	0.423000													7	107					0	0	0.00198382	0	0
LAMB4	22798	broad.mit.edu	37	7	107671290	107671290	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:107671290C>T	uc010ljo.1	-	32	5037	c.4953G>A	c.(4951-4953)CAG>CAA	p.Q1651Q	LAMB4_uc003vey.2_Silent_p.Q1651Q|LAMB4_uc010ljp.1_Silent_p.Q620Q	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1651	Potential.|Domain I.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CAGATTCAGCCTGAACTTTCG	0.507000													15	132					0	0	0.000308642	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518020	113518020	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:113518020C>T	uc010ljy.1	-	4	3158	c.3127G>A	c.(3127-3129)GAA>AAA	p.E1043K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1043					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						GATTCCTTTTCACCTGAAGTG	0.378000													13	193					0	0	0.00244969	0	0
ST7	7982	broad.mit.edu	37	7	116862957	116862957	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:116862957T>C	uc003vin.2	+	16	1895	c.1681T>C	c.(1681-1683)TGC>CGC	p.C561R	ST7_uc011knl.1_Missense_Mutation_p.C538R|ST7_uc003vio.2_Intron|ST7_uc003viq.2_Intron|ST7_uc011knm.1_Intron|ST7_uc003vir.2_Intron|ST7_uc011knn.1_Intron	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	561						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		GGACTGGAATTGCAAGAGTAT	0.313000													9	104					0	0	0.000978159	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117400589	117400589	+	Silent	SNP	G	A	A	rs73473671	byFrequency	TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:117400589G>A	uc003vjf.2	-	10	3164	c.3072C>T	c.(3070-3072)ATC>ATT	p.I1024I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1024										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		CATCAGAAGAGATTGCCTGGA	0.433000													5	180					0	0	0.000157383	0	0
CLEC2L	154790	broad.mit.edu	37	7	139229024	139229024	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:139229024G>A	uc010lnd.2	+	5	581	c.581G>A	c.(580-582)AGG>AAG	p.R194K		NM_001080511	NP_001073980	P0C7M8	CLC2L_HUMAN	C-type lectin domain family 2, member L	194	C-type lectin.					integral to membrane	sugar binding				0	Melanoma(164;0.233)					GAGCCCACCAGGCTGGTGTCG	0.617000													3	12					0	0	0.00024832	0	0
WEE2	494551	broad.mit.edu	37	7	141416068	141416068	+	Splice_Site	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:141416068G>A	uc003vwn.2	+	3	991	c.585_splice	c.e3+1	p.K195_splice	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2						egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					GCCTGCCAAGGTAAGCGTAGT	0.269000													8	89					0	0	0.000673444	0	0
WEE2	494551	broad.mit.edu	37	7	141427191	141427191	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:141427191G>A	uc003vwn.2	+	10	1886	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_RNA|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	494	Potential.				egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					GGGAAAAACAGAAGAGCTCCA	0.468000													9	148					0	0	0.00136819	0	0
OR6V1	346517	broad.mit.edu	37	7	142749792	142749792	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:142749792G>A	uc011ksv.1	+	1	355	c.355G>A	c.(355-357)GAT>AAT	p.D119N		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	119	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					CATGGCCCTTGATCGCTTTGT	0.582000													6	78					0	0	0.00116845	0	0
OR6V1	346517	broad.mit.edu	37	7	142750156	142750156	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:142750156G>A	uc011ksv.1	+	1	719	c.719G>A	c.(718-720)GGG>GAG	p.G240E		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TCCACTTGCGGGTCTCACCTC	0.557000													5	96					0	0	0.00116845	0	0
OR2A12	346525	broad.mit.edu	37	7	143792901	143792901	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:143792901G>A	uc011kty.1	+	1	701	c.701G>A	c.(700-702)AGA>AAA	p.R234K		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					GAGGGCCGCAGAAAGGCCTTC	0.582000													9	102					0	0	0.000442599	0	0
OR2A2	442361	broad.mit.edu	37	7	143807264	143807264	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:143807264G>A	uc011ktz.1	+	1	589	c.589G>A	c.(589-591)GTC>ATC	p.V197I		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	197	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					TAACCAAGTGGTCATATTTGC	0.517000													10	147					0	0	0.00136819	0	0
EZH2	2146	broad.mit.edu	37	7	148524307	148524307	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr7:148524307G>A	uc003wfd.1	-	7	843	c.677C>T	c.(676-678)GCC>GTC	p.A226V	EZH2_uc011kug.1_Missense_Mutation_p.A217V|EZH2_uc003wfb.1_Missense_Mutation_p.A226V|EZH2_uc003wfc.1_Missense_Mutation_p.A187V|EZH2_uc011kuh.1_Missense_Mutation_p.A217V|EZH2_uc011kui.1_Missense_Mutation_p.A226V|EZH2_uc011kuj.1_RNA	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	226	Interaction with DNMT1, DNMT3A and DNMT3B.				negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding			haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			TGAGGAAATGGCTTCAAAAAT	0.363000			Mis		DLBCL								13	246					0	0	0.000566183	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998970	8998970	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:8998970G>A	uc003wsn.3	-	2	357	c.192C>T	c.(190-192)TCC>TCT	p.S64S	PPP1R3B_uc003wso.3_Silent_p.S63S	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	64					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		TGTCTGCGAAGGACACCCGCT	0.537000													4	81					0	0	0.00024832	0	0
RP1L1	94137	broad.mit.edu	37	8	10465299	10465299	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:10465299G>A	uc003wtc.2	-	4	6538	c.6309C>T	c.(6307-6309)GCC>GCT	p.A2103A		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2103					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTGCCTCTGGGGCCTCTACAC	0.617000													7	122					0	0	0.00198382	0	0
HTRA4	203100	broad.mit.edu	37	8	38839233	38839233	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:38839233C>T	uc003xmj.2	+	6	1176	c.1061C>T	c.(1060-1062)CCT>CTT	p.P354L		NM_153692	NP_710159	P83105	HTRA4_HUMAN	HtrA serine peptidase 4 precursor	354	Serine protease.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_lung(54;0.0344)|Hepatocellular(245;0.0512)|Lung NSC(58;0.0955)	LUSC - Lung squamous cell carcinoma(45;1.5e-07)			TTTGCAATTCCTTCAGATCGA	0.428000													8	125					0	0	0.000673444	0	0
RB1CC1	9821	broad.mit.edu	37	8	53589059	53589059	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:53589059G>A	uc003xre.3	-	6	1000	c.442C>T	c.(442-444)CAA>TAA	p.Q148*	RB1CC1_uc003xrf.3_Nonsense_Mutation_p.Q148*	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	148					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				GCCCAGCCTTGGTGTTGAAGA	0.353000													5	72					0	0	0.000602214	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617408	77617408	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:77617408G>A	uc003yav.2	+	2	1472	c.1085G>A	c.(1084-1086)GGT>GAT	p.G362D	ZFHX4_uc003yat.1_Missense_Mutation_p.G362D|ZFHX4_uc003yau.1_Missense_Mutation_p.G362D|ZFHX4_uc003yaw.1_Missense_Mutation_p.G362D	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	362						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ACCTTCCGCGGTTTATGGAGC	0.468000										HNSCC(33;0.089)			7	84					0	0	0.000157383	0	0
FABP12	646486	broad.mit.edu	37	8	82441826	82441826	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:82441826C>T	uc011lfp.1	-	2	93	c.93G>A	c.(91-93)AGG>AGA	p.R31R	FABP12_uc003ycg.3_RNA	NM_001105281	NP_001098751	A6NFH5	FBP12_HUMAN	fatty acid binding protein 12	31							lipid binding|transporter activity				0						GGCCCAGTTTCCTGCTGGCTC	0.348000													5	54					0	0	0.00116845	0	0
ESRP1	54845	broad.mit.edu	37	8	95686589	95686589	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:95686589T>A	uc003ygq.3	+	12	1689	c.1506T>A	c.(1504-1506)TTT>TTA	p.F502L	ESRP1_uc003ygr.3_Missense_Mutation_p.F502L|ESRP1_uc003ygs.3_Missense_Mutation_p.F502L|ESRP1_uc003ygt.3_Missense_Mutation_p.F502L|ESRP1_uc003ygu.3_Missense_Mutation_p.F502L|ESRP1_uc003ygv.2_Missense_Mutation_p.F342L|ESRP1_uc003ygw.2_Missense_Mutation_p.F342L	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	502	RRM 3.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						ACAGAGCATTTATGGCTGCAC	0.453000													14	388					0	0	0.000566183	0	0
PLEKHF2	79666	broad.mit.edu	37	8	96166327	96166327	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:96166327G>A	uc003yhn.1	+	2	302	c.55G>A	c.(55-57)GAA>AAA	p.E19K		NM_024613	NP_078889	Q9H8W4	PKHF2_HUMAN	phafin 2	19						transport vesicle	metal ion binding|protein binding			ovary(2)	2	Breast(36;3.18e-05)					AAGTATAGTGGAAAACTGTTT	0.378000													12	483					0	0	0.00244969	0	0
FBXO43	286151	broad.mit.edu	37	8	101153416	101153416	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:101153416G>A	uc003yjd.2	-	2	1779	c.1066C>T	c.(1066-1068)CAA>TAA	p.Q356*	FBXO43_uc003yje.2_Nonsense_Mutation_p.Q322*|FBXO43_uc010mbp.1_Nonsense_Mutation_p.Q356*	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	356					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			AGTAGTTCTTGAAAAGAACCC	0.463000													8	128					0	0	0.000442599	0	0
RSPO2	340419	broad.mit.edu	37	8	108970310	108970310	+	Missense_Mutation	SNP	C	T	T	rs478185		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:108970310C>T	uc003yms.2	-	5	1272	c.614G>A	c.(613-615)GGA>GAA	p.G205E	RSPO2_uc003ymq.2_Missense_Mutation_p.G138E|RSPO2_uc003ymr.2_Missense_Mutation_p.G141E	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	205					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			ACACCTACCTCCTGGACAATG	0.423000													6	122					0	0	0.000157383	0	0
TRHR	7201	broad.mit.edu	37	8	110100147	110100147	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:110100147C>T	uc003ymz.3	+	1	422	c.406C>T	c.(406-408)CTC>TTC	p.L136F		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	136	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			AGCCCAGTTTCTCTGCACATT	0.403000													4	64					0	0	0.00024832	0	0
SLC30A8	169026	broad.mit.edu	37	8	118159208	118159208	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr8:118159208G>A	uc003yoh.2	+	2	317	c.87G>A	c.(85-87)CAG>CAA	p.Q29Q	SLC30A8_uc010mcz.2_5'UTR|SLC30A8_uc011lia.1_5'UTR|SLC30A8_uc003yog.2_5'UTR	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	29	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			AACTCCAACAGAAACCGGTGA	0.512000													9	211					0	0	0.000673444	0	0
TRPM3	80036	broad.mit.edu	37	9	73151043	73151043	+	Silent	SNP	G	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:73151043G>T	uc004aid.2	-	25	5194	c.4950C>A	c.(4948-4950)ACC>ACA	p.T1650T	TRPM3_uc004ahu.2_Silent_p.T1492T|TRPM3_uc004ahv.2_Silent_p.T1452T|TRPM3_uc004ahw.2_Silent_p.T1522T|TRPM3_uc004ahx.2_Silent_p.T1509T|TRPM3_uc004ahy.2_Silent_p.T1512T|TRPM3_uc004ahz.2_Silent_p.T1499T|TRPM3_uc004aia.2_Silent_p.T1497T|TRPM3_uc004aib.2_Silent_p.T1487T|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1675	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						AGCTCTTCCTGGTGTGTGCAT	0.552000													9	311					0.000978159	0.00776528	0.000978159	1	0
GKAP1	80318	broad.mit.edu	37	9	86354657	86354657	+	Silent	SNP	A	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:86354657A>C	uc004amy.2	-	13	1552	c.1056T>G	c.(1054-1056)GGT>GGG	p.G352G	GKAP1_uc004amz.2_Silent_p.G301G	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	352	Potential.				signal transduction	Golgi apparatus					0						CTTTTCTGCCACCCTGTAAAA	0.343000													7	35					0	0	0.000308642	0	0
AUH	549	broad.mit.edu	37	9	94060341	94060341	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:94060341T>C	uc004arf.3	-	5	558	c.523A>G	c.(523-525)ACA>GCA	p.T175A	AUH_uc004arg.3_Missense_Mutation_p.T146A|AUH_uc011ltu.1_Missense_Mutation_p.T175A	NM_001698	NP_001689	Q13825	AUHM_HUMAN	AU RNA binding protein/enoyl-Coenzyme A	175					branched chain family amino acid catabolic process|mRNA catabolic process	mitochondrial matrix	enoyl-CoA hydratase activity|methylglutaconyl-CoA hydratase activity|mRNA 3'-UTR binding				0						GCTGCAATTGTTGGTACTGGA	0.333000													3	57					0	0	0.00024832	0	0
FGD3	89846	broad.mit.edu	37	9	95795070	95795070	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:95795070C>T	uc004asw.2	+	16	2328	c.1700C>T	c.(1699-1701)TCC>TTC	p.S567F	FGD3_uc004asx.2_Missense_Mutation_p.S567F|FGD3_uc004asz.2_Missense_Mutation_p.S567F|FGD3_uc011luc.1_Missense_Mutation_p.S170F	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	567	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						GGGAAGTGCTCCGAGTTCAAG	0.602000													5	102					0	0	0.00116845	0	0
PPP3R2	5535	broad.mit.edu	37	9	104357125	104357125	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:104357125A>G	uc004bbr.2	-	1	159	c.88T>C	c.(88-90)TTT>CTT	p.F30L	GRIN3A_uc004bbp.1_Intron|GRIN3A_uc004bbq.1_Intron|PPP3R2_uc010mtf.1_Intron	NM_147180	NP_671709	Q96LZ3	CANB2_HUMAN	protein phosphatase 3 regulatory subunit B, beta	27	EF-hand 1.						calcium ion binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)			Cyclosporine(DB00091)	AACTTCTTAAACCTCCTGCCC	0.552000													3	78					0	0	0.00024832	0	0
IKBKAP	8518	broad.mit.edu	37	9	111659492	111659492	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:111659492C>G	uc004bdm.3	-	23	2957	c.2437G>C	c.(2437-2439)GGG>CGG	p.G813R	IKBKAP_uc004bdl.2_Missense_Mutation_p.G464R|IKBKAP_uc011lwc.1_Missense_Mutation_p.G699R|IKBKAP_uc010mtq.2_Missense_Mutation_p.G464R	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	813					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						ATTTTATTCCCGTCAGGATCC	0.463000													3	78					0	0	6.4e-05	0	0
SVEP1	79987	broad.mit.edu	37	9	113312239	113312239	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:113312239C>T	uc010mtz.2	-	2	1014	c.677G>A	c.(676-678)GGG>GAG	p.G226E	SVEP1_uc010mua.1_Missense_Mutation_p.G226E|SVEP1_uc004beu.2_Missense_Mutation_p.G226E|SVEP1_uc004bev.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	226	VWFA.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TCGAATGTTCCCTTGCCATAT	0.498000													4	46					0	0	0.00024832	0	0
ALAD	210	broad.mit.edu	37	9	116153101	116153101	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:116153101G>A	uc011lxf.1	-	5	576	c.374C>T	c.(373-375)CCC>CTC	p.P125L	ALAD_uc011lxe.1_Missense_Mutation_p.P108L|ALAD_uc004bhl.3_Missense_Mutation_p.P154L	NM_000031	NP_000022	P13716	HEM2_HUMAN	delta-aminolevulinic acid dehydratase	125					heme biosynthetic process|protein homooligomerization	cytosol	identical protein binding|lead ion binding|porphobilinogen synthase activity|zinc ion binding				0					Aminolevulinic acid(DB00855)	GGAGGTGTAGGGACACAGGCA	0.612000													6	20					0	0	0.00116845	0	0
TNFSF8	944	broad.mit.edu	37	9	117692442	117692442	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:117692442G>A	uc004bji.1	-	1	329	c.142C>T	c.(142-144)CTG>TTG	p.L48L		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	48	Helical; Signal-anchor for type II membrane protein; (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						ACAAGGCACAGAGCCAGAGTG	0.567000													6	79					0	0	0.00116845	0	0
NEK6	10783	broad.mit.edu	37	9	127089717	127089717	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr9:127089717C>T	uc004bog.2	+	7	764	c.615C>T	c.(613-615)CAC>CAT	p.H205H	NEK6_uc004bof.2_Silent_p.H223H|NEK6_uc004boh.2_Silent_p.H239H|NEK6_uc010mwj.2_Silent_p.H158H|NEK6_uc010mwk.2_Silent_p.H205H|NEK6_uc004boi.2_Silent_p.H205H	NM_014397	NP_055212	Q9HC98	NEK6_HUMAN	NIMA-related kinase 6 isoform 2	205	Protein kinase.				apoptosis|cell division|chromosome segregation|mitosis|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of mitotic metaphase/anaphase transition	cytoplasm|nucleus	ATP binding|kinesin binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|kidney(1)	3						CCGCAGCCCACTCCCTAGGTA	0.617000													5	63					0	0	0.00116845	0	0
GYG2	8908	broad.mit.edu	37	X	2772118	2772118	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:2772118G>A	uc004cqs.1	+	5	622	c.340G>A	c.(340-342)GGG>AGG	p.G114R	GYG2_uc004cqt.1_Missense_Mutation_p.G83R|GYG2_uc004cqu.1_Missense_Mutation_p.G83R|GYG2_uc004cqv.1_5'UTR|GYG2_uc004cqw.1_Missense_Mutation_p.G74R|GYG2_uc004cqx.1_Missense_Mutation_p.G83R|GYG2_uc010ndc.1_5'Flank	NM_003918	NP_003909	O15488	GLYG2_HUMAN	glycogenin 2 isoform b	114					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|soluble fraction	glycogenin glucosyltransferase activity			ovary(1)|kidney(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACCTGAGCTCGGGCTCACCCT	0.507000													3	8					0	0	6.4e-05	0	0
ARSF	416	broad.mit.edu	37	X	3002495	3002495	+	Silent	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:3002495G>A	uc004cre.1	+	6	839	c.618G>A	c.(616-618)GGG>GGA	p.G206G	ARSF_uc004crf.1_Silent_p.G206G	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	206						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TAACCTTTGGGAAGCTGAGCG	0.547000													4	34					0	0	0.00024832	0	0
MXRA5	25878	broad.mit.edu	37	X	3241234	3241234	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:3241234G>A	uc004crg.3	-	5	2649	c.2492C>T	c.(2491-2493)CCT>CTT	p.P831L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	831						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGTCTGCACAGGAGATGCTGA	0.498000													6	37					0	0	0.000157383	0	0
EGFL6	25975	broad.mit.edu	37	X	13624562	13624562	+	Silent	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:13624562T>C	uc004cvi.2	+	6	825	c.585T>C	c.(583-585)TTT>TTC	p.F195F	EGFL6_uc004cvj.2_Silent_p.F195F|EGFL6_uc011mik.1_Silent_p.F96F	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	195	EGF-like 4; calcium-binding (Potential).				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						TGAACACATTTGGAAGCTACT	0.398000													7	65					0	0	0.00198382	0	0
ACE2	59272	broad.mit.edu	37	X	15580108	15580108	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:15580108G>A	uc004cxa.1	-	18	2506	c.2338C>T	c.(2338-2340)CCT>TCT	p.P780S	ACE2_uc004cxb.2_Missense_Mutation_p.P780S	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	780	Cytoplasmic (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	GAGGCATAAGGATTTTCTCCA	0.289000													5	42					0	0	0.00116845	0	0
SCML2	10389	broad.mit.edu	37	X	18342039	18342039	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:18342039G>A	uc004cyl.2	-	5	494	c.337C>T	c.(337-339)CCA>TCA	p.P113S	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Missense_Mutation_p.P113S|SCML2_uc011miz.1_Missense_Mutation_p.P47S	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	113	MBT 1.				anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					TGTATGTCTGGGGAATCGACA	0.408000													4	59					0	0	0.000602214	0	0
DMD	1756	broad.mit.edu	37	X	32472871	32472871	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:32472871C>T	uc004dda.1	-	26	3755	c.3511G>A	c.(3511-3513)GAA>AAA	p.E1171K	DMD_uc004dcz.2_Missense_Mutation_p.E1048K|DMD_uc004dcy.1_Missense_Mutation_p.E1167K|DMD_uc004ddb.1_Missense_Mutation_p.E1163K|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1171	Spectrin 8.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GTCATCCATTCGTGCATCTCT	0.388000													5	78					0	0	0.000602214	0	0
SSX6	280657	broad.mit.edu	37	X	47978927	47978927	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:47978927G>A	uc004dix.1	+	7	600	c.478G>A	c.(478-480)GGG>AGG	p.G160R		NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						ACCCAAAAGGGGGAAACATGC	0.507000													8	144					0	0	0.000673444	0	0
AWAT1	158833	broad.mit.edu	37	X	69458154	69458154	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:69458154G>A	uc004dxy.2	+	5	594	c.553G>A	c.(553-555)GCC>ACC	p.A185T		NM_001013579	NP_001013597	Q58HT5	AWAT1_HUMAN	wax synthase 1	185					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity			ovary(3)	3						TGTGGGTGAGGCCCTGCAAAG	0.602000													5	23					0	0	0.000602214	0	0
CYLC1	1538	broad.mit.edu	37	X	83128266	83128266	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:83128266G>A	uc004eei.1	+	4	571	c.550G>A	c.(550-552)GAA>AAA	p.E184K	CYLC1_uc004eeh.1_Missense_Mutation_p.E183K	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	184					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AACTAATCCAGAATCCCAAAA	0.308000													5	36					0	0	0.00116845	0	0
BTK	695	broad.mit.edu	37	X	100611935	100611935	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:100611935C>T	uc004ehg.2	-	14	1379	c.1186G>A	c.(1186-1188)GAA>AAA	p.E396K	BTK_uc004ehf.2_Intron|BTK_uc010nnh.2_Intron|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_Intron|BTK_uc010nnj.2_RNA|BTK_uc010nnk.2_Intron|BTK_uc010nnl.2_5'UTR|BTK_uc010nnm.2_5'UTR|BTK_uc010nnn.2_Intron|BTK_uc010nno.2_Missense_Mutation_p.E430K|BTK_uc004ehh.1_RNA|BTK_uc004ehi.2_Missense_Mutation_p.E396K	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	396					calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						GGATCAATTTCCCATGATCCT	0.428000									Agammaglobulinemia_X-linked				15	169					0	0	0.00244969	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011545	105011545	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:105011545G>A	uc004elz.1	+	11	2708	c.1952G>A	c.(1951-1953)GGA>GAA	p.G651E		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	651	Cytoplasmic (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						CTACTCAACGGACAGCTACCC	0.458000													5	62					0	0	0.00116845	0	0
NRK	203447	broad.mit.edu	37	X	105152843	105152843	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:105152843C>T	uc004emd.2	+	13	1513	c.1210C>T	c.(1210-1212)CAG>TAG	p.Q404*	NRK_uc010npc.1_Nonsense_Mutation_p.Q72*	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	404	Gln-rich.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GCCACAGGTCCAGGCACTTCA	0.577000										HNSCC(51;0.14)			4	26					0	0	0.00116845	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106070444	106070444	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:106070444C>T	uc004emo.2	+	7	1245	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emm.2_Silent_p.I360I|TBC1D8B_uc004emn.2_Silent_p.I360I	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	360						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AATCTGTCATCATTAGCATCA	0.388000													11	133					0	0	0.00136819	0	0
TRPC5	7224	broad.mit.edu	37	X	111155615	111155615	+	Silent	SNP	G	A	A	rs146697323		TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:111155615G>A	uc004epl.1	-	3	1723	c.804C>T	c.(802-804)ATC>ATT	p.I268I	TRPC5_uc004epm.1_Silent_p.I268I	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	268	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						GATGGTTGAGGATGATCTCCA	0.512000													6	95					0	0	0.00198382	0	0
STAG2	10735	broad.mit.edu	37	X	123205088	123205088	+	Silent	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:123205088C>T	uc004etz.3	+	24	2787	c.2448C>T	c.(2446-2448)ACC>ACT	p.T816T	STAG2_uc004eua.2_Silent_p.T816T|STAG2_uc004eub.2_Silent_p.T816T|STAG2_uc004euc.2_Silent_p.T816T|STAG2_uc004eud.2_Silent_p.T816T|STAG2_uc004eue.2_Silent_p.T816T	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	816					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						TAGTGTATACCCCTGATTCTT	0.373000													6	113					0	0	0.00198382	0	0
ODZ1	10178	broad.mit.edu	37	X	123775740	123775740	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:123775740G>A	uc004euj.2	-	11	2042	c.1978C>T	c.(1978-1980)CCT>TCT	p.P660S	ODZ1_uc011muj.1_Missense_Mutation_p.P659S|ODZ1_uc010nqy.2_Missense_Mutation_p.P660S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	660	EGF-like 5.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGACATACAGGAAGTGGTGTT	0.502000													6	119					0	0	0.00116845	0	0
IGSF1	3547	broad.mit.edu	37	X	130409049	130409049	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:130409049A>T	uc004ewd.2	-	17	3634	c.3396T>A	c.(3394-3396)TAT>TAA	p.Y1132*	IGSF1_uc004ewe.3_Nonsense_Mutation_p.Y1126*|IGSF1_uc004ewf.2_Nonsense_Mutation_p.Y1112*	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1132	Extracellular (Potential).|Ig-like C2-type 11.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						AAACACAGCTATAGATCCCAG	0.512000													9	121					0	0	0.000442599	0	0
VGLL1	51442	broad.mit.edu	37	X	135618348	135618348	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:135618348G>A	uc004ezy.2	+	2	339	c.169G>A	c.(169-171)GAA>AAA	p.E57K		NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	57					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					GAGCCCCCAGGAATTGACCCC	0.537000													4	28					0	0	0.00116845	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290960	141290960	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:141290960C>T	uc004fbu.1	-	3	1162	c.814G>A	c.(814-816)GAG>AAG	p.E272K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	272	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GTGAGGAGCTCCCTAGGCTCC	0.542000										HNSCC(46;0.14)			4	38					0	0	0.00024832	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718516	142718517	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:142718516_142718517GG>AA	uc004fbx.2	-	2	784_785	c.408_409CC>TT	c.(406-411)CTCCAG>CTTTAG	p.Q137*	SLITRK4_uc004fby.2_Nonsense_Mutation_p.Q137*	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	137	Extracellular (Potential).|LRR 4.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TAGTCAGCCTGGAGATACTCCA	0.386000													8	78					0	0	6.4e-05	0	0
PASD1	139135	broad.mit.edu	37	X	150839576	150839576	+	Silent	SNP	T	C	C			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:150839576T>C	uc004fev.3	+	12	1470	c.1138T>C	c.(1138-1140)TTG>CTG	p.L380L		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	380	Potential.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GATGAAGAAGTTGAAGGAGCA	0.448000													6	107					0	0	0.00116845	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869543	151869543	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:151869543C>T	uc004ffq.1	+	3	427	c.233C>T	c.(232-234)CCT>CTT	p.P78L	MAGEA6_uc004ffr.1_Missense_Mutation_p.P78L|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	78							protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					ATGAACTACCCTCTCTGGAGC	0.592000													4	19					0	0	0.000602214	0	0
OPN1LW	5956	broad.mit.edu	37	X	153421872	153421872	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chrX:153421872C>T	uc004fjz.3	+	5	881	c.848C>T	c.(847-849)CCC>CTC	p.P283L		NM_020061	NP_064445	P04000	OPSR_HUMAN	opsin 1 (cone pigments), long-wave-sensitive	283	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGCTGGGGACCCTACACCTTC	0.557000													13	103					0	0	0.00185496	0	0
PLCH2	9651	broad.mit.edu	37	1	2430086	2430087	+	Splice_Site	INS	-	GTGGGGGCC	GTGGGGGCC	rs142848828	by1000genomes	TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr1:2430086_2430087insGTGGGGGCC	uc001aji.1	+	17	2623	c.2349_splice	c.e17+1	p.E783_splice	PLCH2_uc010nyz.1_Splice_Site_p.E571_splice|PLCH2_uc009vle.1_Splice_Site_p.E535_splice|PLCH2_uc001ajj.1_Splice_Site_p.E571_splice|PLCH2_uc001ajk.1_Splice_Site_p.E571_splice|PLCH2_uc001ajl.1_5'Flank	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2						intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		ACCGTGGGGAGGTGGGGGCCAG	0.703													2	4	---	---	---	---					
MGA	23269	broad.mit.edu	37	15	42003322	42003322	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:42003322delC	uc001zog.1	+	8	2950	c.2859delC	c.(2857-2859)AACfs	p.N953fs	MGA_uc010ucy.1_Frame_Shift_Del_p.N953fs|MGA_uc010ucz.1_Frame_Shift_Del_p.N953fs	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	953						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		AGGCGAATAACTTTGTTGTGC	0.438													7	164	---	---	---	---					
UBR1	197131	broad.mit.edu	37	15	43328430	43328430	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A1A1-06A-11D-A197-08	TCGA-ER-A1A1-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	036941fd-ef19-4c62-a255-6470614dbcd7	6c7d99e2-6b5c-43ff-9a02-dec5dd6618fd	g.chr15:43328430delA	uc001zqq.2	-	19	2202	c.2136delT	c.(2134-2136)CTTfs	p.L712fs	UBR1_uc010udk.1_Frame_Shift_Del_p.L712fs	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	712					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		CATACCTCTGAAGTACCAGTA	0.328													12	390	---	---	---	---					
