Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MTOR	2475	broad.mit.edu	37	1	11272938	11272938	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr1:11272938C>T	uc001asd.2	-	22	3434	c.3313G>A	c.(3313-3315)GCC>ACC	p.A1105T		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1105	HEAT 5.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity	p.A1105T(1)		central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TCCAGGTTGGCGCCAAACAGC	0.512000													23	52					0	0	0.00047179	0	0
IPO13	9670	broad.mit.edu	37	1	44432250	44432250	+	Silent	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr1:44432250C>T	uc001ckx.2	+	16	3196	c.2401C>T	c.(2401-2403)CTG>TTG	p.L801L	IPO13_uc001cky.2_Silent_p.L19L	NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	801	HEAT 14.				protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				CCTGCAGGCTCTGAAGCGGAA	0.607000													19	38					0	0	0.000229342	0	0
DISP1	84976	broad.mit.edu	37	1	223176989	223176990	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr1:223176989_223176990CG>AT	uc001hnu.1	+	8	2397_2398	c.2250_2251CG>AT	c.(2248-2253)TCCGAG>TCATAG	p.E751*		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	751					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TGGAGTTATCCGAGTTCCAGGT	0.460000													10	892					0	0	6.4e-05	0	0
INPP5A	3632	broad.mit.edu	37	10	134594359	134594359	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr10:134594359A>G	uc001llp.2	+	14	1344	c.1096A>G	c.(1096-1098)AGC>GGC	p.S366G	INPP5A_uc001llq.2_Missense_Mutation_p.S261G	NM_005539	NP_005530	Q14642	I5P1_HUMAN	inositol polyphosphate-5-phosphatase A	366					cell communication	membrane	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|PH domain binding			skin(1)	1		all_cancers(35;8.59e-13)|all_epithelial(44;5.49e-09)|Lung NSC(174;0.000854)|all_lung(145;0.00146)|all_neural(114;0.0299)|Colorectal(31;0.0599)|Breast(234;0.0849)|Melanoma(40;0.124)|all_hematologic(284;0.196)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;0.000102)|Epithelial(32;0.00023)|all cancers(32;0.000326)		CCAGTCGGAGAGCGAGGAGAA	0.602000													4	95					0	0	1.23904e-05	0	0
LOC653544	653544	broad.mit.edu	37	10	135491100	135491100	+	Silent	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr10:135491100G>A	uc010qvi.1	+	1	822	c.711G>A	c.(709-711)TCG>TCA	p.S237S		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	237						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGCTCCCTCGTGGGTCGCCT	0.761000													8	45					0	0	0.000442599	0	0
MUC5B	727897	broad.mit.edu	37	11	1271528	1271528	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr11:1271528A>G	uc009ycr.1	+	51	14963	c.14837A>G	c.(14836-14838)CAG>CGG	p.Q4946R	MUC5B_uc001ltb.2_Missense_Mutation_p.Q4476R	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4473	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TCCTCCACCCAGGCAACTGCT	0.667000													3	57					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	11	31086649	31086649	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr11:31086649C>T	uc009yjk.1	-	7	763	c.694G>A	c.(694-696)GAT>AAT	p.D232N	uc009yjl.1_Missense_Mutation_p.D160N|DCDC1_uc001msu.1_Missense_Mutation_p.D403N					RecName: Full=Doublecortin domain-containing protein 5;																		TGGGTCACATCTACTTGTGCA	0.438000													5	24					0	0	1.23904e-05	0	0
IL26	55801	broad.mit.edu	37	12	68595823	68595823	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr12:68595823G>A	uc001stx.1	-	4	439	c.404C>T	c.(403-405)ACC>ATC	p.T135I		NM_018402	NP_060872	Q9NPH9	IL26_HUMAN	interleukin 26 precursor	135					cell-cell signaling|negative regulation of epithelial cell proliferation|positive regulation of cytokine secretion|positive regulation of ERK1 and ERK2 cascade|positive regulation of JAK-STAT cascade|positive regulation of protein kinase B signaling cascade|positive regulation of stress-activated MAPK cascade|positive regulation of transcription from RNA polymerase II promoter	cytosol|extracellular space|soluble fraction	cytokine activity				0			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000515)		TTTCATCCTGGTAATGGATTT	0.264000													7	12					0	0	0.000274275	0	0
PTPRB	5787	broad.mit.edu	37	12	70953201	70953201	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr12:70953201A>G	uc001swb.3	-	16	4012	c.3982T>C	c.(3982-3984)TAT>CAT	p.Y1328H	PTPRB_uc010sto.1_Missense_Mutation_p.Y1238H|PTPRB_uc010stp.1_Missense_Mutation_p.Y1238H|PTPRB_uc001swc.3_Missense_Mutation_p.Y1546H|PTPRB_uc001swa.3_Missense_Mutation_p.Y1458H|PTPRB_uc001swd.3_Missense_Mutation_p.Y1545H|PTPRB_uc009zrr.1_Missense_Mutation_p.Y1425H	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1328	Fibronectin type-III 15.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTGAATTGATAGGATCTCCCT	0.443000													3	204					0	0	6.4e-05	0	0
UTP20	27340	broad.mit.edu	37	12	101761709	101761709	+	Silent	SNP	T	C	C			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr12:101761709T>C	uc001tia.1	+	48	6495	c.6339T>C	c.(6337-6339)CCT>CCC	p.P2113P		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	2113					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TGCTGGATCCTTTTGTGTCTC	0.443000													3	192					0	0	0.00024832	0	0
ACAD10	80724	broad.mit.edu	37	12	112153653	112153653	+	Silent	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr12:112153653C>T	uc001tsq.2	+	7	1079	c.879C>T	c.(877-879)CAC>CAT	p.H293H	ACAD10_uc001tso.3_Intron|ACAD10_uc001tsp.2_Silent_p.H293H|ACAD10_uc009zvx.2_Silent_p.H324H|ACAD10_uc001tsr.2_Silent_p.H31H|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	293							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						AGTTTGATCACGGGCAGTCAA	0.473000													42	92					0	0	0.000509022	0	0
LOC284232	284232	broad.mit.edu	37	13	19419995	19419995	+	RNA	SNP	C	G	G	rs78291036	by1000genomes	TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr13:19419995C>G	uc010tcj.1	-	1		c.26115G>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GAACTAAGAACAGTTAGATAA	0.294000													3	56					0	0	3.59834e-05	0	0
CLEC14A	161198	broad.mit.edu	37	14	38723898	38723898	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr14:38723898C>T	uc001wum.1	-	1	1677	c.1330G>A	c.(1330-1332)GAG>AAG	p.E444K		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	444	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GGATCACTCTCCAGGCCCGGC	0.582000													25	24					0	0	0.000375601	0	0
ADAM6	8755	broad.mit.edu	37	14	106829984	106829985	+	RNA	DNP	GG	AA	AA			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr14:106829984_106829985GG>AA	uc010tyt.1	-	323		c.12520_12521CC>TT			uc001ysx.1_Intron					Parts of antibodies, mostly variable regions.												0						CTCACATCTGGGAGCTGCCACC	0.535000													17	19					0	0	6.4e-05	0	0
C15orf2	23742	broad.mit.edu	37	15	24924253	24924253	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr15:24924253G>A	uc001ywo.2	+	1	3713	c.3239G>A	c.(3238-3240)GGA>GAA	p.G1080E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1080					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTGTATTTGGATATACTTCT	0.537000													49	55					0	0	0.000147903	0	0
AXIN1	8312	broad.mit.edu	37	16	343711	343712	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr16:343711_343712CC>AA	uc002cgp.1	-	8	2139_2140	c.1962_1963GG>TT	c.(1960-1965)TCGGGG>TCTTGG	p.G655W	AXIN1_uc002cgq.1_Missense_Mutation_p.G655W	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	655	Interaction with RNF111.|Interaction with PPP2CA.				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				TTCCTCGTCCCCGAAGACCTTG	0.639000													7	130					0	0	6.4e-05	0	0
BCAR1	9564	broad.mit.edu	37	16	75276399	75276399	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr16:75276399C>T	uc002fdv.2	-	2	725	c.602G>A	c.(601-603)CGC>CAC	p.R201H	BCAR1_uc010cgu.2_Missense_Mutation_p.R172H|BCAR1_uc010vna.1_Missense_Mutation_p.R199H|BCAR1_uc010vnb.1_Missense_Mutation_p.R247H|BCAR1_uc002fdw.2_Missense_Mutation_p.R201H|BCAR1_uc010vnc.1_Intron|BCAR1_uc010vnd.1_Missense_Mutation_p.R219H|BCAR1_uc002fdx.2_Missense_Mutation_p.R219H	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	201	Substrate for kinases (By similarity).				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		CTCCCAGCTGCGTGTGTCCAT	0.637000													21	69					0	0	0.00047179	0	0
CDC27	996	broad.mit.edu	37	17	45234323	45234323	+	Silent	SNP	T	C	C			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr17:45234323T>C	uc002ild.3	-	7	925	c.798A>G	c.(796-798)CGA>CGG	p.R266R	CDC27_uc002ile.3_Silent_p.R266R|CDC27_uc002ilf.3_Silent_p.R266R|CDC27_uc010wkp.1_Silent_p.R205R|CDC27_uc010wkq.1_RNA	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	266					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						CTAATAAACTTCGACCAGTTT	0.358000													6	63					0	0	8.12818e-05	0	0
CASKIN2	57513	broad.mit.edu	37	17	73497865	73497865	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr17:73497865C>T	uc002joc.2	-	18	3840	c.3290G>A	c.(3289-3291)GGA>GAA	p.G1097E	CASKIN2_uc010wsc.1_Missense_Mutation_p.G1015E	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	1097	Pro-rich.					cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTTACCTGCTCCGGGCACCTT	0.642000													48	73					0	0	0.000147903	0	0
MC5R	4161	broad.mit.edu	37	18	13826737	13826737	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr18:13826737G>A	uc010xaf.1	+	1	973	c.973G>A	c.(973-975)GAT>AAT	p.D325N		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	325	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						TCCCAGAAGGGATTAAGCACA	0.522000													31	47					0	0	0.000409698	0	0
VAV1	7409	broad.mit.edu	37	19	6821684	6821684	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr19:6821684G>A	uc002mfu.1	+	3	470	c.373G>A	c.(373-375)GGG>AGG	p.G125R	VAV1_uc010xjh.1_Missense_Mutation_p.G125R|VAV1_uc010dva.1_Missense_Mutation_p.G125R|VAV1_uc002mfv.1_Missense_Mutation_p.G70R	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	125					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CCAGAACAGGGGGATCATGTG	0.642000													21	32					0	0	0.000375601	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15582857	15582857	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr19:15582857C>T	uc002nbf.3	-	3	1320	c.1187G>A	c.(1186-1188)CGC>CAC	p.R396H	PGLYRP2_uc002nbg.3_Missense_Mutation_p.R396H	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	396					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CAGCTTCGGGCGGCCCCGATA	0.657000													14	17					0	0	7.07596e-05	0	0
AP1M1	8907	broad.mit.edu	37	19	16345234	16345235	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr19:16345234_16345235CC>TT	uc002ndu.2	+	12	1433_1434	c.1260_1261CC>TT	c.(1258-1263)CTCCGG>CTTTGG	p.R421W	AP1M1_uc002ndv.2_Missense_Mutation_p.R433W|AP1M1_uc010xpd.1_Missense_Mutation_p.R368W	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	421	MHD.				cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						ATTACCAGCTCCGGACCCAGTG	0.688000													12	26					0	0	6.4e-05	0	0
ZNF780B	163131	broad.mit.edu	37	19	40540452	40540452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr19:40540452G>A	uc002omu.2	-	5	2379	c.2314C>T	c.(2314-2316)CAG>TAG	p.Q772*	ZNF780B_uc002omv.2_Nonsense_Mutation_p.Q624*	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	772	C2H2-type 22; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAATACTCTGAGGTTGAACA	0.418000													25	26					0	0	9.22233e-05	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41430339	41430339	+	Silent	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr19:41430339C>T	uc010ehg.1	+	1	170	c.162C>T	c.(160-162)TCC>TCT	p.S54S	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Silent_p.S54S|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						TACTCAAATCCTTTCTGAGGG	0.562000													21	33					0	0	0.000229342	0	0
TEX101	83639	broad.mit.edu	37	19	43922418	43922418	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr19:43922418G>A	uc010xwo.1	+	6	814	c.619G>A	c.(619-621)GAA>AAA	p.E207K	TEX101_uc002owk.2_Missense_Mutation_p.E225K	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	207						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				GTTTGTGAGGGAAGCGTGCCC	0.527000													40	58					0	0	0.000319135	0	0
FOSB	2354	broad.mit.edu	37	19	45974075	45974075	+	Silent	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr19:45974075C>T	uc002pbx.3	+	2	907	c.315C>T	c.(313-315)TCC>TCT	p.S105S	ERCC1_uc002pbu.1_Intron|FOSB_uc002pbw.2_Silent_p.S105S|FOSB_uc010eke.2_Silent_p.S66S|FOSB_uc002pby.3_Silent_p.S105S|FOSB_uc010eka.1_Silent_p.S66S|FOSB_uc010ekb.1_Silent_p.S105S|FOSB_uc010ekc.1_Intron|FOSB_uc010ekf.2_Silent_p.S66S|FOSB_uc010ekd.1_Silent_p.S105S|FOSB_uc010ekg.2_Intron|FOSB_uc002pca.3_Silent_p.S56S	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	105					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		CCAGCTACTCCACACCAGGCA	0.682000													53	99					0	0	0.000147903	0	0
APOB	338	broad.mit.edu	37	2	21255321	21255322	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr2:21255321_21255322GG>TT	uc002red.2	-	10	1384_1385	c.1256_1257CC>AA	c.(1255-1257)CCC>CAA	p.P419Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	419	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTGAGGGCTCGGGGATCAGGGC	0.599000													8	379					0	0	6.4e-05	0	0
LRP1B	53353	broad.mit.edu	37	2	141201982	141201982	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr2:141201982G>A	uc002tvj.1	-	65	11183	c.10211C>T	c.(10210-10212)ACC>ATC	p.T3404I		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3404	Extracellular (Potential).|LDL-receptor class A 23.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTGGTTCTTGGTACATTTGAA	0.383000										TSP Lung(27;0.18)			17	41					0	0	0.000422831	0	0
GRB14	2888	broad.mit.edu	37	2	165383625	165383625	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr2:165383625C>T	uc002ucl.2	-	4	1043	c.502G>A	c.(502-504)GAA>AAA	p.E168K	GRB14_uc010zcv.1_Missense_Mutation_p.E81K|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	168	Ras-associating.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						ATCACCAGTTCGTGGTCTTCT	0.264000													19	39					0	0	0.000375601	0	0
SF3B1	23451	broad.mit.edu	37	2	198267483	198267483	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr2:198267483C>T	uc002uue.2	-	14	1922	c.1874G>A	c.(1873-1875)CGT>CAT	p.R625H		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	625	HEAT 3.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TGTTGTGTTACGGACATACTC	0.438000													13	27					0	0	0.000151284	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3674962	3674962	+	Silent	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr20:3674962G>A	uc002wja.2	-	12	3162	c.3162C>T	c.(3160-3162)ATC>ATT	p.I1054I	SIGLEC1_uc002wjb.1_5'Flank|SIGLEC1_uc002wiz.3_Silent_p.I1054I	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1054	Ig-like C2-type 10.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						TAGCCCCGTGGATCTCCAGAC	0.622000													51	86					0	0	0.000147903	0	0
PLCB4	5332	broad.mit.edu	37	20	9374259	9374259	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr20:9374259T>C	uc002wnf.2	+	17	1484	c.1348T>C	c.(1348-1350)TCC>CCC	p.S450P	PLCB4_uc010gbw.1_Missense_Mutation_p.S450P|PLCB4_uc010gbx.2_Missense_Mutation_p.S450P|PLCB4_uc002wne.2_Missense_Mutation_p.S450P|PLCB4_uc002wnh.2_Missense_Mutation_p.S297P	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	450	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GGCTTTGCCATCCCCCAATGA	0.433000											OREG0025771	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	82					0	0	6.4e-05	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353000													7	82					0	0	0.000157383	0	0
FRG1B	284802	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr20:29625941A>T	uc010ztl.1	+	2	127	c.95A>T	c.(94-96)GAT>GTT	p.D32V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGCATTCAGATGCAATTGGA	0.333000													5	85					0	0	3.59834e-05	0	0
SGK2	10110	broad.mit.edu	37	20	42213534	42213534	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr20:42213534C>A	uc002xkv.2	+	12	1381	c.1162C>A	c.(1162-1164)CAG>AAG	p.Q388K	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Missense_Mutation_p.Q328K|SGK2_uc010ggm.2_3'UTR|SGK2_uc002xks.2_Missense_Mutation_p.Q327K|SGK2_uc002xku.2_Missense_Mutation_p.Q328K	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	388	AGC-kinase C-terminal.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			AGAGTTCACCCAGGAAGCTGT	0.527000													6	164					0.000157383	0.00829148	0.000157383	1	0
PPIL2	23759	broad.mit.edu	37	22	22049076	22049076	+	Silent	SNP	C	T	T	rs148599036		TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr22:22049076C>T	uc010gtj.1	+	18	1418	c.1302C>T	c.(1300-1302)TTC>TTT	p.F434F	PPIL2_uc002zvh.3_Silent_p.F434F|PPIL2_uc002zvi.3_Silent_p.F434F|PPIL2_uc002zvg.3_Silent_p.F434F|PPIL2_uc011aij.1_Silent_p.F413F|PPIL2_uc002zvk.3_Silent_p.F180F	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	434					blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					CTACAGTGTTCGTGGACCCCT	0.647000													17	42					0	0	7.07596e-05	0	0
CNTN6	27255	broad.mit.edu	37	3	1414548	1414548	+	Silent	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr3:1414548G>A	uc003boz.2	+	14	1962	c.1695G>A	c.(1693-1695)AGG>AGA	p.R565R	CNTN6_uc011asj.1_Silent_p.R493R|CNTN6_uc003bpa.2_Silent_p.R565R	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	565	Ig-like C2-type 6.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TGATGATAAGGAATATTCAGT	0.373000													32	38					0	0	0.000109025	0	0
SEMA5B	54437	broad.mit.edu	37	3	122629053	122629053	+	Silent	SNP	G	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr3:122629053G>A	uc003efz.1	-	23	3697	c.3393C>T	c.(3391-3393)CCC>CCT	p.P1131P	SEMA5B_uc011bju.1_Silent_p.P1037P|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003efy.1_Silent_p.P109P	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	1131	Cytoplasmic (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GTTTGTTCAGGGGGCTTGGGT	0.542000													27	57					0	0	0.000117367	0	0
GP9	2815	broad.mit.edu	37	3	128781018	128781018	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr3:128781018C>T	uc003elm.2	+	3	623	c.436C>T	c.(436-438)CCG>TCG	p.P146S		NM_000174	NP_000165	P14770	GPIX_HUMAN	glycoprotein IX (platelet) precursor	146	Extracellular (Potential).				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane	protein binding				0					Quinine(DB00468)	CTGGGTGCGCCCGGGGGTCTT	0.726000													6	4					0	0	0.000157383	0	0
DGKG	1608	broad.mit.edu	37	3	185970917	185970917	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr3:185970917C>T	uc003fqa.2	-	18	2102	c.1565G>A	c.(1564-1566)GGA>GAA	p.G522E	DGKG_uc003fqb.2_Missense_Mutation_p.G483E|DGKG_uc003fqc.2_Missense_Mutation_p.G497E|DGKG_uc011brx.1_Missense_Mutation_p.G463E	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	522	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	AAGGTCATTTCCTGTTCCAAG	0.517000													25	46					0	0	0.000147802	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15443951	15443952	+	Missense_Mutation	DNP	CG	AT	AT	rs150846082		TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr4:15443951_15443952CG>AT	uc011bxb.1	+	3	625_626	c.398_399CG>AT	c.(397-399)CCG>CAT	p.P133H	C1QTNF7_uc003gno.2_Missense_Mutation_p.P140H|C1QTNF7_uc003gnp.2_Missense_Mutation_p.P133H	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	133	Collagen-like.					collagen					0						CAAGGGGACCCGGGGCTGCCTG	0.515000													6	145					0	0	6.4e-05	0	0
LIMCH1	22998	broad.mit.edu	37	4	41621233	41621233	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr4:41621233G>C	uc003gvu.3	+	8	765	c.711G>C	c.(709-711)TTG>TTC	p.L237F	LIMCH1_uc003gvt.1_Missense_Mutation_p.L78F|LIMCH1_uc003gvv.3_Missense_Mutation_p.L237F|LIMCH1_uc003gvw.3_Missense_Mutation_p.L237F|LIMCH1_uc003gvx.3_Missense_Mutation_p.L237F|LIMCH1_uc003gwe.3_Missense_Mutation_p.L237F|LIMCH1_uc003gvy.3_Missense_Mutation_p.L78F|LIMCH1_uc003gwa.3_Missense_Mutation_p.L78F|LIMCH1_uc003gvz.3_Missense_Mutation_p.L78F|LIMCH1_uc011byu.1_Missense_Mutation_p.L83F|LIMCH1_uc003gwc.3_Missense_Mutation_p.L83F|LIMCH1_uc003gwd.3_Missense_Mutation_p.L83F|LIMCH1_uc011byv.1_5'UTR|LIMCH1_uc003gwb.1_Missense_Mutation_p.L85F	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	237					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AATCCGACTTGCCTCATCGGA	0.507000													7	301					0	0	8.12818e-05	0	0
HHIP	64399	broad.mit.edu	37	4	145567871	145567871	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr4:145567871C>T	uc003ijs.1	+	1	699	c.44C>T	c.(43-45)GCT>GTT	p.A15V	uc003ijq.1_5'Flank|HHIP_uc003ijr.1_Missense_Mutation_p.A15V	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	15						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		CTGGCCGTGGCTCTGGGCTTC	0.617000											OREG0016346	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	58	94					0	0	0.000147903	0	0
SLC12A7	10723	broad.mit.edu	37	5	1060464	1060464	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr5:1060464G>C	uc003jbu.2	-	21	2908	c.2842C>G	c.(2842-2844)CGA>GGA	p.R948G		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	948	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	CGTACCTCTCGCTCCTGCTCG	0.562000													36	230					0	0	0.000125731	0	0
RARS	5917	broad.mit.edu	37	5	167943886	167943887	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr5:167943886_167943887CC>TT	uc003lzx.2	+	13	1597_1598	c.1556_1557CC>TT	c.(1555-1557)TCC>TTT	p.S519F	RARS_uc011deo.1_Missense_Mutation_p.S313F	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	519					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		TACATCTTCTCCTTTGACAAAA	0.411000													72	99					0	0	6.4e-05	0	0
COL23A1	91522	broad.mit.edu	37	5	177683870	177683870	+	Silent	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr5:177683870C>T	uc003mje.2	-	14	1192	c.834G>A	c.(832-834)CCG>CCA	p.P278P	COL23A1_uc010jkt.2_Missense_Mutation_p.R126Q	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	278	Extracellular (Potential).|Collagen-like 2.|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		ATGTCACCTTCGGTCCTGGGG	0.632000													7	10					0	0	0.000157383	0	0
MSH5	4439	broad.mit.edu	37	6	31711731	31711732	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr6:31711731_31711732CC>AA	uc003nwv.1	+	6	545_546	c.466_467CC>AA	c.(466-468)CCA>AAA	p.P156K	MSH5_uc003nwt.1_Missense_Mutation_p.P156K|MSH5_uc003nwu.1_Missense_Mutation_p.P156K|MSH5_uc003nww.1_Missense_Mutation_p.P156K|MSH5_uc003nwx.1_Missense_Mutation_p.P156K|MSH5_uc011dof.1_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	156					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						CTCCTTCATCCCAGACGCCATG	0.436000								Direct_reversal_of_damage|MMR					12	719					0	0	6.4e-05	0	0
MDH2	4191	broad.mit.edu	37	7	75694157	75694157	+	Silent	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr7:75694157C>T	uc003ueo.2	+	8	857	c.771C>T	c.(769-771)CGC>CGT	p.R257R	MDH2_uc003uep.2_Silent_p.R150R|MDH2_uc011kgh.1_Silent_p.R215R	NM_005918	NP_005909	P40926	MDHM_HUMAN	mitochondrial malate dehydrogenase precursor	257					gluconeogenesis|malate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus|plasma membrane	binding|L-malate dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					NADH(DB00157)	CCGGCGCCCGCTTTGTCTTCT	0.572000													19	31					0	0	0.000132079	0	0
MYOM2	9172	broad.mit.edu	37	8	2021526	2021526	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr8:2021526C>A	uc003wpx.3	+	10	1204	c.1066C>A	c.(1066-1068)CGC>AGC	p.R356S	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	356	Ig-like C2-type 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GTACACCCTGCGCATCGTGTC	0.617000													20	12					4.35082e-09	2.3712e-07	0.000175454	1	0
ADAM7	8756	broad.mit.edu	37	8	24358349	24358349	+	Silent	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr8:24358349C>T	uc003xeb.2	+	19	2162	c.2049C>T	c.(2047-2049)ATC>ATT	p.I683I	ADAM7_uc003xec.2_Silent_p.I455I	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	683	Helical; (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		TTGTCGGTATCGGAGTTCTTA	0.383000													24	18					0	0	9.22233e-05	0	0
AP3M2	10947	broad.mit.edu	37	8	42012386	42012386	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr8:42012386C>T	uc003xop.2	+	3	472	c.181C>T	c.(181-183)CGC>TGC	p.R61C	AP3M2_uc003xoo.2_Missense_Mutation_p.R61C|AP3M2_uc010lxe.2_RNA|AP3M2_uc003xoq.1_5'UTR|AP3M2_uc003xor.1_Missense_Mutation_p.R61C	NM_001134296	NP_001127768	P53677	AP3M2_HUMAN	adaptor-related protein complex 3, mu 2 subunit	61					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus					0	all_cancers(6;8.14e-25)|all_epithelial(6;2.41e-27)|all_lung(13;5.09e-13)|Lung NSC(13;8.38e-12)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|Colorectal(10;0.00165)|OV - Ovarian serous cystadenocarcinoma(14;0.00346)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)			AAGTGTTTACCGCCACAAGAT	0.483000													7	117					0	0	8.12818e-05	0	0
GNAQ	2776	broad.mit.edu	37	9	80409488	80409488	+	Missense_Mutation	SNP	T	G	G	rs121913492		TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr9:80409488T>G	uc004akw.2	-	5	667	c.626A>C	c.(625-627)CAA>CCA	p.Q209P	GNAQ_uc011lso.1_Missense_Mutation_p.Q7P	NM_002072	NP_002063	P50148	GNAQ_HUMAN	guanine nucleotide binding protein (G protein),	209	GTP (By similarity).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|glutamate signaling pathway|negative regulation of protein kinase activity|platelet activation|protein ADP-ribosylation|protein stabilization|regulation of action potential|regulation of catenin import into nucleus	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activator activity|GTPase activity|signal transducer activity	p.Q209L(89)|p.Q209P(88)|p.Q209R(2)|p.Q209Y(1)|p.Q209H(1)		eye(136)|skin(44)|meninges(11)|ovary(1)|kidney(1)	193						CTCTGACCTTTGGCCCCCTAC	0.348000			Mis		uveal melanoma								36	38					0	0	0.000191422	0	0
MBNL3	55796	broad.mit.edu	37	X	131573585	131573585	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chrX:131573585C>A	uc004ewv.3	-	1	134	c.55G>T	c.(55-57)GTC>TTC	p.V19F	MBNL3_uc004eww.2_5'UTR|MBNL3_uc010nrl.1_RNA|MBNL3_uc004ewu.3_Missense_Mutation_p.V19F	NM_018388	NP_060858	Q9NUK0	MBNL3_HUMAN	muscleblind-like 3 isoform G	19	C3H1-type 1.				mRNA processing|multicellular organismal development|regulation of RNA splicing|RNA splicing	Golgi apparatus|nucleus	nucleic acid binding|zinc ion binding				0	Acute lymphoblastic leukemia(192;0.000127)					TCTCTACAGACTTCTAAAGTC	0.428000													73	106					1.3515e-34	7.49489e-33	0.000147903	1	0
NTN5	126147	broad.mit.edu	37	19	49173724	49173724	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr19:49173724delG	uc002pkb.2	-	2	616	c.520delC	c.(520-522)CGCfs	p.R174fs	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Frame_Shift_Del_p.R174fs	NM_145807	NP_665806	Q8WTR8	NET5_HUMAN	netrin 5 precursor	174	Laminin EGF-like 1.					extracellular region				large_intestine(1)|pancreas(1)	2						CAGTGGCAGCGGGGGGGCCGG	0.766													2	4	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233708909	233708910	+	In_Frame_Ins	INS	-	AGC	AGC			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr2:233708909_233708910insAGC	uc002vti.3	+	26	3380_3381	c.3043_3044insAGC	c.(3043-3045)AAG>AAGCAG	p.1022_1023insQ	GIGYF2_uc002vtj.3_In_Frame_Ins_p.1043_1044insQ|GIGYF2_uc002vtk.3_In_Frame_Ins_p.1022_1023insQ|GIGYF2_uc002vth.3_In_Frame_Ins_p.1016_1017insQ|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_In_Frame_Ins_p.864_865insA|GIGYF2_uc002vtq.3_In_Frame_Ins_p.355_356insQ	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	1022_1023	Gln-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		GCAAATGCAAAagcagcagcag	0.366													2	4	---	---	---	---					
LOC729375	729375	broad.mit.edu	37	3	129817351	129817351	+	RNA	DEL	C	-	-			TCGA-ER-A2NF-06A-11D-A19A-08	TCGA-ER-A2NF-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	15daadb0-6b24-4248-9225-470dc08f1552	f0d22e58-5486-47c4-a316-e974e2bcbae6	g.chr3:129817351delC	uc003ene.2	-	3		c.1160delG			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						TGGTGAATGACCCGGGAAGCT	0.547													2	4	---	---	---	---					
