Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RIMS3	9783	broad.mit.edu	37	1	41107425	41107425	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:41107425C>A	uc001cfu.1	-	3	642	c.173G>T	c.(172-174)GGC>GTC	p.G58V	RIMS3_uc001cfv.1_Missense_Mutation_p.G58V	NM_014747	NP_055562	Q9UJD0	RIMS3_HUMAN	regulating synaptic membrane exocytosis 3	58					neurotransmitter transport	cell junction|synapse					0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.47e-17)			CTGAGTCAGGCCCACGATGGC	0.652000													23	63					2.48779e-11	2.82963e-11	0.027356	1	0
HSD3B1	3283	broad.mit.edu	37	1	120050152	120050152	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:120050152G>A	uc001ehv.1	+	2	198	c.53G>A	c.(52-54)AGG>AAG	p.R18K	HSD3B1_uc001ehw.2_Missense_Mutation_p.R20K	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	18					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	CTGGGACAGAGGATCATCCGC	0.517000													51	72					0	0	0.048971	0	0
HMGCS2	3158	broad.mit.edu	37	1	120295916	120295916	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:120295916C>T	uc001eid.2	-	7	1332	c.1281G>A	c.(1279-1281)CAG>CAA	p.Q427Q	HMGCS2_uc010oxj.1_Silent_p.Q385Q|HMGCS2_uc001eie.2_Silent_p.Q335Q	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	427					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		GAGCAGCATCCTGGGATACTC	0.498000													4	46					0	0	0.014758	0	0
FLG2	388698	broad.mit.edu	37	1	152328035	152328035	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:152328035A>C	uc001ezw.3	-	3	2300	c.2227T>G	c.(2227-2229)TCT>GCT	p.S743A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	743	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCAAAGCCAGAGGACTGACCT	0.507000													7	391					0	0	0.029380	0	0
DCST2	127579	broad.mit.edu	37	1	155001826	155001826	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:155001826T>C	uc001fgm.2	-	8	1305	c.1225A>G	c.(1225-1227)ACC>GCC	p.T409A	DCST2_uc009wpb.2_RNA	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	409	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			AGGTTGAAGGTCTCCAGAATG	0.552000													3	90					0	0	0.014758	0	0
DARC	2532	broad.mit.edu	37	1	159175360	159175360	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:159175360A>T	uc001fto.2	+	2	371	c.131A>T	c.(130-132)AAC>ATC	p.N44I	DARC_uc001ftp.3_Missense_Mutation_p.N46I	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	44	Extracellular (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					TATGGTGCCAACCTGGAAGCA	0.527000													15	76					0	0	0.024245	0	0
FCGR3A	2214	broad.mit.edu	37	1	161518454	161518454	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:161518454C>A	uc001gat.3	-	4	213	c.76G>T	c.(76-78)GCT>TCT	p.A26S	FCGR3A_uc001gar.2_Missense_Mutation_p.A62S|FCGR3A_uc001gas.2_Missense_Mutation_p.A61S|FCGR3A_uc009wuh.2_Missense_Mutation_p.A25S|FCGR3A_uc009wui.2_Missense_Mutation_p.A26S	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	26	Ig-like C2-type 1.|Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AACACCACAGCCTTTGGGAGA	0.557000													10	104					2.68362e-12	3.07584e-12	0.013537	1	0
DCAF6	55827	broad.mit.edu	37	1	167971768	167971768	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:167971768G>C	uc001gew.2	+	8	1194	c.952G>C	c.(952-954)GAT>CAT	p.D318H	DCAF6_uc001gev.2_Missense_Mutation_p.D318H|DCAF6_uc001gex.2_Missense_Mutation_p.D318H|DCAF6_uc010plk.1_Missense_Mutation_p.D287H|DCAF6_uc001gey.2_Missense_Mutation_p.D171H	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	318					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGATTGGTCAGATACTGGACC	0.378000													36	122					0	0	0.048971	0	0
RABGAP1L	9910	broad.mit.edu	37	1	174200441	174200441	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:174200441T>C	uc001gjx.2	+	4	685	c.490T>C	c.(490-492)TAC>CAC	p.Y164H	RABGAP1L_uc009wwq.1_Missense_Mutation_p.Y164H|RABGAP1L_uc001gjw.2_Missense_Mutation_p.Y127H	NM_014857	NP_055672	Q5R372	RBG1L_HUMAN	RAB GTPase activating protein 1-like isoform A	164	PID.				regulation of protein localization	early endosome|Golgi apparatus|nucleus	Rab GTPase activator activity			ovary(2)|lung(1)|kidney(1)	4						TTCCAGTCAATACCCCTTTCC	0.388000													40	239					0	0	0.048971	0	0
KCNT2	343450	broad.mit.edu	37	1	196227553	196227553	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:196227553G>C	uc001gtd.1	-	26	3042	c.2982C>G	c.(2980-2982)AGC>AGG	p.S994R	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.S927R|KCNT2_uc001gtf.1_Missense_Mutation_p.S970R|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Missense_Mutation_p.S498R	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	994	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TGCGGTGGTTGCTGCGGTGGT	0.468000													24	104					0	0	0.030593	0	0
RYR2	6262	broad.mit.edu	37	1	237540689	237540689	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:237540689T>C	uc001hyl.1	+	8	650	c.530T>C	c.(529-531)GTT>GCT	p.V177A		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	177	Cytoplasmic (By similarity).|MIR 2.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAAGTACGAGTTGGAGATGAC	0.438000													15	81					0	0	0.049695	0	0
PDSS1	23590	broad.mit.edu	37	10	27009216	27009216	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr10:27009216C>T	uc001isv.2	+	6	583	c.537C>T	c.(535-537)CAC>CAT	p.H179H	PDSS1_uc001isw.2_Silent_p.H179H	NM_014317	NP_055132	Q5T2R2	DPS1_HUMAN	prenyl diphosphate synthase, subunit 1	179					isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrion	metal ion binding|protein heterodimerization activity				0						GTCTGGTTCACGATGACGTTA	0.398000													26	30					0	0	0.034045	0	0
MYOZ1	58529	broad.mit.edu	37	10	75394358	75394358	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr10:75394358G>A	uc001jur.2	-	4	751	c.386C>T	c.(385-387)TCT>TTT	p.S129F		NM_021245	NP_067068	Q9NP98	MYOZ1_HUMAN	myozenin 1	129	Gly-rich.				myofibril assembly	nucleus|pseudopodium	FATZ binding			ovary(2)	2	Prostate(51;0.0112)					CTGCTGATCAGAGCCATACTG	0.657000													4	131					0	0	0.029380	0	0
FANK1	92565	broad.mit.edu	37	10	127686010	127686010	+	Silent	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr10:127686010T>C	uc001ljh.3	+	6	599	c.495T>C	c.(493-495)TCT>TCC	p.S165S	FANK1_uc009yan.2_Silent_p.S191S|FANK1_uc001lji.2_Silent_p.S159S	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	165	ANK 2.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				TCCTAGTTTCTAATGGCACAG	0.408000													13	98					0	0	0.024245	0	0
OR51M1	390059	broad.mit.edu	37	11	5411106	5411106	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:5411106G>A	uc010qzc.1	+	1	478	c.478G>A	c.(478-480)GTC>ATC	p.V160I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	160						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGCCTAATTGTCATCTTCCG	0.542000													51	136					0	0	0.048971	0	0
ZNF214	7761	broad.mit.edu	37	11	7023947	7023947	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:7023947C>T	uc001mfa.2	-	2	423	c.120G>A	c.(118-120)ATG>ATA	p.M40I	ZNF214_uc010ray.1_Missense_Mutation_p.M40I|ZNF214_uc009yfh.1_Missense_Mutation_p.M40I	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	40	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TACCTACTGACATGACATTTG	0.378000													31	88					0	0	0.069456	0	0
EIF4G2	1982	broad.mit.edu	37	11	10828824	10828824	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:10828824C>G	uc001mjc.2	-	2	436	c.19G>C	c.(19-21)GAA>CAA	p.E7Q	EIF4G2_uc001mjb.2_5'UTR|EIF4G2_uc009ygf.2_5'UTR|EIF4G2_uc001mjd.2_Missense_Mutation_p.E7Q|EIF4G2_uc001mjf.1_5'UTR	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	7					cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		GCACCCCCTTCTGCAATCGCA	0.433000													98	63					0	0	0.048971	0	0
USH1C	10083	broad.mit.edu	37	11	17548358	17548358	+	Splice_Site	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:17548358C>G	uc001mnf.2	-	7	631	c.522_splice	c.e7-1	p.S174_splice	USH1C_uc001mne.2_Splice_Site_p.S174_splice|USH1C_uc009yhb.2_Splice_Site_p.S174_splice|USH1C_uc001mng.2_Splice_Site|USH1C_uc001mnd.2_Splice_Site_p.S138_splice	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a						equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						ATCAGGAGAGCTGATGGGAAG	0.557000													13	27					0	0	0.016723	0	0
KLC2	64837	broad.mit.edu	37	11	66029609	66029609	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:66029609G>A	uc010rov.1	+	4	718	c.475G>A	c.(475-477)GTC>ATC	p.V159I	KLC2_uc010row.1_Missense_Mutation_p.V159I|KLC2_uc009yra.2_Missense_Mutation_p.V159I|KLC2_uc001ohb.2_Missense_Mutation_p.V159I|KLC2_uc010rox.1_Missense_Mutation_p.V82I|KLC2_uc001ohc.2_Missense_Mutation_p.V159I|KLC2_uc001ohd.2_Missense_Mutation_p.V82I|KLC2_uc001ohe.1_Missense_Mutation_p.V20I	NM_001134775	NP_001128247	Q9H0B6	KLC2_HUMAN	kinesin light chain 2 isoform 1	159					blood coagulation	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0						GAAGGGGGACGTCCCCAAAGA	0.602000													12	54					0	0	0.024245	0	0
KRTAP5-7	440050	broad.mit.edu	37	11	71238615	71238615	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:71238615G>A	uc001oqq.1	+	1	303	c.269G>A	c.(268-270)TGT>TAT	p.C90Y		NM_001012503	NP_001012521	Q6L8G8	KRA57_HUMAN	keratin associated protein 5-7	90	7 X 4 AA repeats of C-C-X-P.					keratin filament					0						TGTGGTTCTTGTGgctgctcc	0.338000													6	255					0	0	0.069234	0	0
CEP57	9702	broad.mit.edu	37	11	95546701	95546701	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:95546701G>A	uc001pfp.1	+	4	673	c.452G>A	c.(451-453)CGA>CAA	p.R151Q	CEP57_uc001pfo.1_Missense_Mutation_p.R151Q|CEP57_uc010ruh.1_Missense_Mutation_p.R142Q|CEP57_uc010rui.1_Missense_Mutation_p.R151Q|CEP57_uc009ywn.1_5'UTR|CEP57_uc001pfq.1_Missense_Mutation_p.R151Q|CEP57_uc001pfr.1_5'UTR	NM_014679	NP_055494	Q86XR8	CEP57_HUMAN	translokin	151	Potential.|centrosome localization domain (CLD) (By similarity).				fibroblast growth factor receptor signaling pathway|G2/M transition of mitotic cell cycle|protein import into nucleus, translocation|spermatid development	centrosome|cytosol|Golgi apparatus|microtubule|nucleus	fibroblast growth factor binding|protein homodimerization activity			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GAATACATGCGAAATATGATA	0.343000									Mosaic_Variegated_Aneuploidy_Syndrome				5	39					0	0	0.021553	0	0
CNTN5	53942	broad.mit.edu	37	11	99690276	99690276	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:99690276G>A	uc001pga.2	+	4	396	c.57G>A	c.(55-57)GAG>GAA	p.E19E	CNTN5_uc009ywv.1_Silent_p.E19E|CNTN5_uc001pfz.2_Silent_p.E19E|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	19					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTCTTACAGAGTATTCAAAAT	0.308000													8	47					0	0	0.010729	0	0
HTR3B	9177	broad.mit.edu	37	11	113813867	113813867	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:113813867A>C	uc001pok.2	+	7	927	c.860A>C	c.(859-861)AAC>ACC	p.N287T	HTR3B_uc001pol.2_Missense_Mutation_p.N276T	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	287	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		TTCAGGGTCAACATGTCCAAC	0.572000													9	32					0	0	0.069234	0	0
MLL	4297	broad.mit.edu	37	11	118373881	118373881	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:118373881C>T	uc001pta.2	+	27	7288	c.7265C>T	c.(7264-7266)TCC>TTC	p.S2422F	MLL_uc001ptb.2_Missense_Mutation_p.S2425F	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2422					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GGATCTAGTTCCAGAGATAGG	0.393000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								6	26					0	0	0.021553	0	0
AKAP3	10566	broad.mit.edu	37	12	4736477	4736477	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr12:4736477C>T	uc001qnb.3	-	4	1820	c.1591G>A	c.(1591-1593)GCC>ACC	p.A531T		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	531					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						AGAAGCAGGGCAGACACGATC	0.512000													4	148					0	0	0.021553	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028751	13028751	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr12:13028751G>C	uc010sho.1	+	1	341	c.319G>C	c.(319-321)GGC>CGC	p.G107R		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						GGTGTTTGACGGCATCCCACC	0.612000													3	31					0	0	0.004672	0	0
DDX23	9416	broad.mit.edu	37	12	49230029	49230029	+	Silent	SNP	A	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr12:49230029A>G	uc001rsm.2	-	11	1348	c.1257T>C	c.(1255-1257)CGT>CGC	p.R419R		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	419	Q motif.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						GAATTGCCTGACGCTGTATAG	0.512000													4	194					0	0	0.021553	0	0
TUBA1B	10376	broad.mit.edu	37	12	49522057	49522057	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr12:49522057C>A	uc001rtm.2	-	4	1261	c.1040G>T	c.(1039-1041)TGC>TTC	p.C347F	TUBA1B_uc001rto.2_Missense_Mutation_p.C312F|TUBA1B_uc001rtk.2_Missense_Mutation_p.C312F|TUBA1B_uc001rtl.2_Missense_Mutation_p.C312F|TUBA1B_uc001rtn.2_Missense_Mutation_p.C194F|uc010smg.1_5'UTR	NM_006082	NP_006073	P68363	TBA1B_HUMAN	tubulin, alpha, ubiquitous	347					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding				0						GCCAGTGGGGCACCAATCCAC	0.557000													7	64					0.000157383	0.000167501	0.038147	1	0
ELK3	2004	broad.mit.edu	37	12	96617393	96617393	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr12:96617393G>A	uc001teo.1	+	2	328	c.49G>A	c.(49-51)GAT>AAT	p.D17N		NM_005230	NP_005221	P41970	ELK3_HUMAN	ELK3 protein	17	ETS.				negative regulation of transcription, DNA-dependent|signal transduction	mitochondrion	protein binding|purine-rich negative regulatory element binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	all_cancers(2;0.00173)					GTTGCTGCTGGATCAGAAACA	0.532000													18	72					0	0	0.043863	0	0
CDK17	5128	broad.mit.edu	37	12	96680478	96680478	+	Missense_Mutation	SNP	C	T	T	rs147593071		TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr12:96680478C>T	uc001tep.1	-	12	1669	c.1180G>A	c.(1180-1182)GTG>ATG	p.V394M	CDK17_uc009ztk.2_Missense_Mutation_p.V394M|CDK17_uc010svb.1_Missense_Mutation_p.V341M	NM_002595	NP_002586	Q00537	CDK17_HUMAN	PCTAIRE protein kinase 2	394	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity			ovary(3)|lung(2)|kidney(1)|central_nervous_system(1)	7						TCATCTTCCACGGTTGATCCT	0.363000													17	58					0	0	0.062417	0	0
DEPDC4	120863	broad.mit.edu	37	12	100660735	100660735	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr12:100660735C>G	uc001thi.2	-	1	123	c.120G>C	c.(118-120)AGG>AGC	p.R40S	SCYL2_uc009ztw.1_5'Flank|SCYL2_uc001thm.1_5'Flank|SCYL2_uc001thn.2_5'Flank|DEPDC4_uc001thh.1_RNA|DEPDC4_uc001thj.1_Missense_Mutation_p.R40S|DEPDC4_uc009ztv.1_Missense_Mutation_p.R40S|DEPDC4_uc001thk.1_5'UTR|DEPDC4_uc001thl.1_RNA	NM_152317	NP_689530	Q8N2C3	DEPD4_HUMAN	DEP domain containing 4	40					intracellular signal transduction						0						CTCTACGGTTCCTGGAACTTG	0.582000													33	90					0	0	0.025465	0	0
PWP1	11137	broad.mit.edu	37	12	108098446	108098446	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr12:108098446T>A	uc001tmo.1	+	11	1086	c.999T>A	c.(997-999)GAT>GAA	p.D333E	PWP1_uc009zuu.1_Missense_Mutation_p.D333E	NM_007062	NP_008993	Q13610	PWP1_HUMAN	periodic tryptophan protein 1	333	WD 3.				transcription, DNA-dependent	nucleus					0						GAAGTCCAGATGAAAGCCATC	0.398000													27	71					0	0	0.050027	0	0
MYO16	23026	broad.mit.edu	37	13	109704741	109704741	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr13:109704741G>T	uc001vqt.1	+	25	3026	c.2900G>T	c.(2899-2901)GGA>GTA	p.G967V	MYO16_uc010agk.1_Missense_Mutation_p.G989V|MYO16_uc001vqu.1_Missense_Mutation_p.G767V|MYO16_uc010tjh.1_Missense_Mutation_p.G479V	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	967	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			AAATTCCGAGGACATAAGTCT	0.373000													9	44					3.86212e-05	4.23129e-05	0.069234	1	0
EDDM3A	10876	broad.mit.edu	37	14	21216123	21216123	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr14:21216123C>T	uc001vyb.2	+	2	451	c.384C>T	c.(382-384)GGC>GGT	p.G128G	EDDM3A_uc001vyc.2_Silent_p.G128G	NM_006683	NP_006674	Q14507	EP3A_HUMAN	human epididymis-specific 3 alpha precursor	128					sperm displacement	extracellular space					0						TCCATTGTGGCGTAGATGGAT	0.438000													9	67					0	0	0.047766	0	0
WASH3P	374666	broad.mit.edu	37	15	102516373	102516373	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr15:102516373C>T	uc002cdi.2	+	11	2119	c.699C>T	c.(697-699)CCC>CCT	p.P233P	WASH3P_uc002cdl.2_Silent_p.P233P|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Silent_p.P233P|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						GTGAGGGGCCCGGAGGAGCCT	0.662000													2	2					0	0	0.004672	0	0
MSLNL	401827	broad.mit.edu	37	16	832011	832011	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr16:832011C>T	uc002cjz.1	-	2	112	c.112G>A	c.(112-114)GAC>AAC	p.D38N		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	Error:Variant_position_missing_in_Q96KJ4_after_alignment					cell adhesion	integral to membrane				breast(3)|ovary(1)	4						GCTGAGACGTCCCAGGGCAGG	0.662000													9	5					0	0	0.069234	0	0
TEKT5	146279	broad.mit.edu	37	16	10788486	10788486	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr16:10788486C>T	uc002czz.1	-	1	317	c.245G>A	c.(244-246)CGC>CAC	p.R82H		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	82					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						GAGTGCGGAGCGCAGTGTGGG	0.667000													25	46					0	0	0.027356	0	0
Unknown	0	broad.mit.edu	37	16	21854779	21854779	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr16:21854779C>T	uc002djr.3	-	6	655	c.473G>A	c.(472-474)CGT>CAT	p.R158H	uc002djs.3_RNA|uc002djq.3_Missense_Mutation_p.R139H|uc010vbn.1_Missense_Mutation_p.R158H	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3																		CTTCCTCTTACGGATTTTAGC	0.383000													13	68					0	0	0.033300	0	0
GNAO1	2775	broad.mit.edu	37	16	56388866	56388866	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr16:56388866C>A	uc002eiu.3	+	8	1863	c.966C>A	c.(964-966)CAC>CAA	p.H322Q		NM_020988	NP_066268	P09471	GNAO_HUMAN	guanine nucleotide binding protein, alpha	322					dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|muscle contraction	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|metabotropic serotonin receptor binding|signal transducer activity			lung(1)|breast(1)	2		all_neural(199;0.159)				TATATTGTCACATGACTTGTG	0.498000													7	57					0.000274275	0.000289837	0.047766	1	0
CHTF8	54921	broad.mit.edu	37	16	69155019	69155019	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr16:69155019G>A	uc002ewn.1	-	3	179	c.78C>T	c.(76-78)ATC>ATT	p.I26I	CHTF8_uc002ewm.1_5'UTR|CHTF8_uc002ewo.1_Silent_p.I7I|CHTF8_uc002ewp.1_Silent_p.I26I	NM_001040146	NP_001035236	P0CG13	CTF8_HUMAN	chromosome transmission fidelity factor 8	26					cell cycle|DNA replication	nucleus	DNA binding				0						AGCGAGCCTCGATCTCCCCCT	0.562000													4	200					0	0	0.014758	0	0
CLEC18B	497190	broad.mit.edu	37	16	74447026	74447026	+	Silent	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr16:74447026G>T	uc002fct.2	-	5	785	c.585C>A	c.(583-585)ATC>ATA	p.I195I	CLEC18B_uc002fcu.2_Silent_p.I195I|CLEC18B_uc010vmu.1_Silent_p.I115I|CLEC18B_uc010vmv.1_5'Flank	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B	195						extracellular region	sugar binding				0						TATAGGGGATGATTGTCTTCC	0.622000													18	204					3.8784e-16	4.62306e-16	0.062417	1	0
OR1A2	26189	broad.mit.edu	37	17	3101369	3101369	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr17:3101369A>T	uc002fvd.1	+	1	557	c.557A>T	c.(556-558)AAG>ATG	p.K186M		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CCTTTGCTGAAGTTGTCCTGT	0.463000													32	64					0	0	0.054565	0	0
TP53	7157	broad.mit.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	C	C	rs121912666		TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr17:7578190T>C	uc002gim.2	-	6	853	c.659A>G	c.(658-660)TAT>TGT	p.Y220C	TP53_uc002gig.1_Missense_Mutation_p.Y220C|TP53_uc002gih.2_Missense_Mutation_p.Y220C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.Y88C|TP53_uc010cng.1_Missense_Mutation_p.Y88C|TP53_uc002gii.1_Missense_Mutation_p.Y88C|TP53_uc010cnh.1_Missense_Mutation_p.Y220C|TP53_uc010cni.1_Missense_Mutation_p.Y220C|TP53_uc002gij.2_Missense_Mutation_p.Y220C|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.Y127C|TP53_uc002gio.2_Missense_Mutation_p.Y88C|TP53_uc010vug.1_Missense_Mutation_p.Y181C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	220	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		Y -> N (in sporadic cancers; somatic mutation).|Y -> H (in sporadic cancers; somatic mutation).|Y -> S (in a brain tumor with no family history; germline mutation and in sporadic cancers; somatic mutation).|Y -> F (in a sporadic cancer; somatic mutation).|Y -> D (in sporadic cancers; somatic mutation).|Y -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Y220C(205)|p.Y220N(12)|p.Y220H(9)|p.Y220S(9)|p.0?(7)|p.Y220fs*27(4)|p.Y220*(3)|p.Y220D(2)|p.Y127C(2)|p.D208fs*1(1)|p.Y220_P223delYEPP(1)|p.?(1)|p.V218_E224delVPYEPPE(1)|p.V218_E221delVPYE(1)|p.V218_Y220delVPY(1)|p.Y220fs*25(1)|p.V216_Y220delVVVPY(1)|p.Y220fs*1(1)|p.Y220fs*2(1)|p.V218fs*26(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGGCGGCTCATAGGGCACCAC	0.557000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			31	6					0	0	0.027894	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	C	C	rs141357429	by1000genomes	TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr17:39274087G>C	uc002hvz.2	-	1	520	c.481C>G	c.(481-483)CTG>GTG	p.L161V		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	161	27.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACTGGACGCAGGcagcagcag	0.323000													4	14					0	0	0.029380	0	0
KRT16	3868	broad.mit.edu	37	17	39766663	39766663	+	Nonsense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr17:39766663G>C	uc002hxg.3	-	6	1339	c.1200C>G	c.(1198-1200)TAC>TAG	p.Y400*	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	400	Rod.|Coil 2.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GCAAGATCTGGTACTCCTGGC	0.627000													50	112					0	0	0.048971	0	0
RPS6KB1	6198	broad.mit.edu	37	17	58024091	58024091	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr17:58024091A>G	uc002ixy.2	+	15	1623	c.1520A>G	c.(1519-1521)AAA>AGA	p.K507R	RPS6KB1_uc010ddj.1_Intron|RPS6KB1_uc010wom.1_Missense_Mutation_p.K454R|RPS6KB1_uc010won.1_Missense_Mutation_p.K484R|RPS6KB1_uc010woo.1_Missense_Mutation_p.K442R|RPS6KB1_uc002ixz.2_RNA	NM_003161	NP_003152	P23443	KS6B1_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	507	Autoinhibitory domain.				apoptosis|G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|negative regulation of apoptosis|phosphatidylinositol-mediated signaling|positive regulation of mitotic cell cycle|positive regulation of translational initiation|TOR signaling cascade	cell junction|cytoplasm|cytosol|mitochondrial outer membrane|nucleus|nucleus|synapse|synaptosome	ATP binding|protein binding|protein kinase activity			large_intestine(1)	1	all_cancers(5;1.63e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.57e-12)|all cancers(12;6.41e-11)			GGGCCATACAAAAAACAAGCT	0.458000													25	52					0	0	0.037714	0	0
GNA11	2767	broad.mit.edu	37	19	3118942	3118943	+	Missense_Mutation	DNP	AG	TT	TT			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr19:3118942_3118943AG>TT	uc002lxd.2	+	5	868_869	c.626_627AG>TT	c.(625-627)CAG>CTT	p.Q209L	uc010xhe.1_5'Flank	NM_002067	NP_002058	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein),	209	GTP (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity	p.Q209L(73)|p.Q209P(1)		eye(70)|skin(16)	86		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		GTGGGGGGCCAGCGGTCGGAGC	0.614000			Mis		uveal melanoma								18	67					0	0	0.004672	0	0
ZNF844	284391	broad.mit.edu	37	19	12187275	12187275	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr19:12187275G>C	uc002mtb.2	+	4	1483	c.1340G>C	c.(1339-1341)CGT>CCT	p.R447P	ZNF844_uc010dym.1_Missense_Mutation_p.R290P	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	447					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGAGAAACCGTATGAGTGTA	0.433000													3	67					0	0	0.009096	0	0
ZNF208	7757	broad.mit.edu	37	19	22155506	22155506	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr19:22155506T>C	uc002nqp.2	-	5	2179	c.2030A>G	c.(2029-2031)TAC>TGC	p.Y677C	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTCACATTTGTAGGGTTTCTC	0.363000													14	37					0	0	0.049695	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580582	40580582	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr19:40580582C>T	uc002omy.2	-	6	1992	c.1767G>A	c.(1765-1767)GAG>GAA	p.E589E	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Silent_p.E589E|ZNF780A_uc010xvh.1_Silent_p.E590E	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	589	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					CTTTCCCACACTCCTTACATT	0.393000													4	230					0	0	0.014758	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580666	40580666	+	Silent	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr19:40580666T>C	uc002omy.2	-	6	1908	c.1683A>G	c.(1681-1683)GAA>GAG	p.E561E	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Silent_p.E561E|ZNF780A_uc010xvh.1_Silent_p.E562E	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	561	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					CTTTCCCACATTCCTTACATT	0.388000													4	236					0	0	0.029380	0	0
SPTBN4	57731	broad.mit.edu	37	19	41078018	41078018	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr19:41078018G>A	uc002ony.2	+	34	7499	c.7413G>A	c.(7411-7413)GGG>GGA	p.G2471G	SPTBN4_uc002onz.2_Silent_p.G2471G|SPTBN4_uc010egx.2_Silent_p.G1214G	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2471	PH.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CACACGGTGGGGAACCGCTGC	0.597000													4	246					0	0	0.009096	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51961290	51961290	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr19:51961290C>A	uc002pwt.2	-	1	419	c.352G>T	c.(352-354)GAT>TAT	p.D118Y	SIGLEC8_uc010yda.1_Missense_Mutation_p.D118Y|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.D118Y	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	118	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GACCCCTTATCCCTCTTCCTG	0.488000													8	158					6.40141e-05	6.91167e-05	0.010729	1	0
BRE	9577	broad.mit.edu	37	2	28352238	28352238	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:28352238G>C	uc002rlr.2	+	8	989	c.671G>C	c.(670-672)CGA>CCA	p.R224P	BRE_uc002rlp.1_Missense_Mutation_p.R224P|BRE_uc002rlq.2_Missense_Mutation_p.R224P|BRE_uc002rls.2_Missense_Mutation_p.R224P|BRE_uc002rlt.2_Missense_Mutation_p.R224P|BRE_uc002rlu.2_Missense_Mutation_p.R224P|BRE_uc002rlv.2_Missense_Mutation_p.R86P	NM_199194	NP_954664	Q9NXR7	BRE_HUMAN	brain and reproductive organ-expressed (TNFRSF1A	224					apoptosis|chromatin modification|double-strand break repair|G2/M transition DNA damage checkpoint|positive regulation of anti-apoptosis|positive regulation of DNA repair|response to ionizing radiation|signal transduction	BRCA1-A complex|BRISC complex|cytoplasm|nuclear ubiquitin ligase complex	peroxisome targeting sequence binding|polyubiquitin binding|tumor necrosis factor receptor binding			lung(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TTGTCACCTCGAATTGAGCAG	0.448000													28	65					0	0	0.064281	0	0
ALK	238	broad.mit.edu	37	2	30142966	30142966	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:30142966A>T	uc002rmy.2	-	1	1467	c.560T>A	c.(559-561)ATC>AAC	p.I187N		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	187	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CATCAGGCGGATCCTCAGTCG	0.652000			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				7	30					0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	2	89399458	89399458	+	RNA	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:89399458G>A	uc010ytr.1	-	46		c.4987C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCTGAACTTTGATGGGACCCC	0.473000													58	119					0	0	0.048971	0	0
POTEE	445582	broad.mit.edu	37	2	131976198	131976198	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:131976198A>G	uc002tsn.2	+	1	275	c.223A>G	c.(223-225)AGT>GGT	p.S75G	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	75							ATP binding				0						CTGCAGGGGGAGTGGCAAGAG	0.587000													3	160					0	0	0.009096	0	0
LRP1B	53353	broad.mit.edu	37	2	141751586	141751586	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:141751586G>A	uc002tvj.1	-	16	3594	c.2622C>T	c.(2620-2622)AGC>AGT	p.S874S	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	874	Extracellular (Potential).|LDL-receptor class A 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AATCCTCATCGCTTCCGTCTA	0.428000										TSP Lung(27;0.18)			18	40					0	0	0.049695	0	0
GRB14	2888	broad.mit.edu	37	2	165365354	165365354	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:165365354C>T	uc002ucl.2	-	7	1366	c.825G>A	c.(823-825)CGG>CGA	p.R275R	GRB14_uc010zcv.1_Silent_p.R188R|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	275	PH.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						ACTGCAAATGCCGCGGTTCCT	0.323000													50	21					0	0	0.048971	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:207025358A>G	uc002vbf.1	+	3	285	c.127A>G	c.(127-129)AGC>GGC	p.S43G	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Missense_Mutation_p.S43G|EEF1B2_uc002vbh.1_Missense_Mutation_p.S43G|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	43	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						AGCCGTGTCCAGCCCACCGCC	0.468000													5	117					0	0	0.021553	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:207025366G>A	uc002vbf.1	+	3	293	c.135G>A	c.(133-135)CCG>CCA	p.P45P	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Silent_p.P45P|EEF1B2_uc002vbh.1_Silent_p.P45P|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	45	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						CCAGCCCACCGCCTGCCGACT	0.448000													6	113					0	0	0.038147	0	0
PLCB4	5332	broad.mit.edu	37	20	9424678	9424678	+	Splice_Site	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr20:9424678G>T	uc002wnf.2	+	29	2914	c.2778_splice	c.e29+1	p.K926_splice	PLCB4_uc010gbw.1_Splice_Site_p.K926_splice|PLCB4_uc010gbx.2_Splice_Site_p.K938_splice|PLCB4_uc002wne.2_Splice_Site_p.K926_splice|PLCB4_uc002wnh.2_Splice_Site_p.K773_splice	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b						intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GCAGATGAAGGTAAAATTGCT	0.303000													8	68					0.00621372	0.00642947	0.058154	1	0
FRG1B	284802	broad.mit.edu	37	20	29624070	29624070	+	Missense_Mutation	SNP	G	A	A	rs79198850		TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr20:29624070G>A	uc010ztl.1	+	1	36	c.4G>A	c.(4-6)GCT>ACT	p.A2T	FRG1B_uc002wvm.1_Intron|FRG1B_uc010ztj.1_Intron|FRG1B_uc010gdr.1_Intron|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GCAGTTTATGGCTGTCAAATT	0.269000													3	12					0	0	0.029380	0	0
NFATC2	4773	broad.mit.edu	37	20	50049132	50049132	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr20:50049132G>A	uc002xwd.2	-	9	2414	c.2194C>T	c.(2194-2196)CGC>TGC	p.R732C	NFATC2_uc002xwc.2_Missense_Mutation_p.R732C|NFATC2_uc010zyv.1_Missense_Mutation_p.R513C|NFATC2_uc010zyw.1_Missense_Mutation_p.R513C|NFATC2_uc010zyx.1_Missense_Mutation_p.R712C|NFATC2_uc010zyy.1_Missense_Mutation_p.R513C|NFATC2_uc010zyz.1_Missense_Mutation_p.R513C|NFATC2_uc002xwe.2_Missense_Mutation_p.R712C	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	732					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					AGCCCCGTGCGGAACTGCTGG	0.682000													3	22					0	0	0.004672	0	0
CHODL	140578	broad.mit.edu	37	21	19635164	19635164	+	Missense_Mutation	SNP	A	T	T	rs142087135	byFrequency	TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr21:19635164A>T	uc002ykv.2	+	5	1082	c.691A>T	c.(691-693)ATA>TTA	p.I231L	CHODL_uc002ykr.2_Missense_Mutation_p.I190L|CHODL_uc002yks.2_Missense_Mutation_p.I190L|CHODL_uc002ykt.2_Intron|CHODL_uc002yku.2_Intron	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	231	Helical; (Potential).				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		GCTCTTACTGATACTGGTTGC	0.323000													29	68					0	0	0.033182	0	0
GGT3P	2679	broad.mit.edu	37	22	18778612	18778612	+	RNA	SNP	C	T	T	rs1055042	by1000genomes	TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr22:18778612C>T	uc011ago.1	-	2		c.208G>A			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						GCGGCCACGGCAGCCCTGGTG	0.597000													5	44					0	0	0.038147	0	0
TXNRD2	10587	broad.mit.edu	37	22	19918614	19918614	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr22:19918614C>G	uc011ahc.1	-	2	144	c.111G>C	c.(109-111)CAG>CAC	p.Q37H	TXNRD2_uc002zql.1_5'UTR|TXNRD2_uc002zqm.1_RNA|TXNRD2_uc002zqn.1_RNA|TXNRD2_uc002zqo.1_RNA|TXNRD2_uc002zqp.1_RNA|TXNRD2_uc002zqr.1_Missense_Mutation_p.Q36H|TXNRD2_uc010grv.1_Missense_Mutation_p.Q37H|TXNRD2_uc002zqj.1_RNA|TXNRD2_uc002zqs.2_Missense_Mutation_p.Q5H	NM_006440	NP_006431	Q9NNW7	TRXR2_HUMAN	thioredoxin reductase 2 precursor	37					cell redox homeostasis|response to oxygen radical	mitochondrion	flavin adenine dinucleotide binding|NADP binding|thioredoxin-disulfide reductase activity			ovary(2)	2	Colorectal(54;0.0993)					CATAGTCCCGCTGACCTGCTG	0.532000													16	153					0	0	0.049695	0	0
MOV10L1	54456	broad.mit.edu	37	22	50553006	50553006	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr22:50553006C>G	uc003bjj.2	+	7	1164	c.1081C>G	c.(1081-1083)CAG>GAG	p.Q361E	MOV10L1_uc003bjk.3_Missense_Mutation_p.Q361E|MOV10L1_uc011arp.1_Missense_Mutation_p.Q341E|MOV10L1_uc011arq.1_Missense_Mutation_p.Q122E|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	361					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		CAAAACCTCTCAGATGTCGGA	0.478000													8	40					0	0	0.038147	0	0
SUMF1	285362	broad.mit.edu	37	3	4452589	4452589	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:4452589C>T	uc003bpz.1	-	7	939	c.914G>A	c.(913-915)TGG>TAG	p.W305*	SUMF1_uc003bps.1_RNA|SUMF1_uc011ass.1_Nonsense_Mutation_p.W280*|SUMF1_uc010hby.1_Nonsense_Mutation_p.W305*|SUMF1_uc011ast.1_Nonsense_Mutation_p.W173*	NM_182760	NP_877437	Q8NBK3	SUMF1_HUMAN	sulfatase modifying factor 1 isoform 1	305						endoplasmic reticulum lumen	metal ion binding|oxidoreductase activity			upper_aerodigestive_tract(1)	1		Melanoma(143;0.068)|Colorectal(144;0.233)		Epithelial(13;0.0147)|OV - Ovarian serous cystadenocarcinoma(96;0.0444)|all cancers(10;0.0549)		AACAGTCCACCAGTCTGAAGT	0.453000													5	155					0	0	0.029380	0	0
TGM4	7047	broad.mit.edu	37	3	44948523	44948523	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:44948523C>T	uc003coc.3	+	10	1231	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	386					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	GATTCGTCTTCTCAGAAGTGA	0.507000													24	47					0	0	0.021523	0	0
NISCH	11188	broad.mit.edu	37	3	52514200	52514200	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:52514200G>A	uc011beg.1	+	14	1489	c.1417G>A	c.(1417-1419)GGT>AGT	p.G473S	NISCH_uc003ded.3_Missense_Mutation_p.G473S|NISCH_uc003dec.1_Missense_Mutation_p.G473S	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	473	Necessary for homooligomerization and targeting to endosomes.|Interaction with PAK1 (By similarity).				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		TCGTCCTCAGGGTGGTGAAGA	0.657000													29	109					0	0	0.037714	0	0
BBX	56987	broad.mit.edu	37	3	107524293	107524293	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:107524293G>A	uc010hpr.2	+	18	3142	c.2815G>A	c.(2815-2817)GCT>ACT	p.A939T	BBX_uc003dwk.3_Missense_Mutation_p.A909T|BBX_uc003dwl.3_Silent_p.A602A|BBX_uc003dwm.3_Missense_Mutation_p.A909T|BBX_uc003dwo.3_Silent_p.A255A	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	939					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			TATTTCCTGCGCTGACCAGTG	0.468000													9	83					0	0	0.058154	0	0
HHLA2	11148	broad.mit.edu	37	3	108072520	108072520	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:108072520C>T	uc003dwy.3	+	4	478	c.311C>T	c.(310-312)GCG>GTG	p.A104V	HHLA2_uc011bhl.1_Intron|HHLA2_uc010hpu.2_Missense_Mutation_p.A104V|HHLA2_uc003dwz.2_Missense_Mutation_p.A104V	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	104	Ig-like V-type 1.					integral to membrane				ovary(1)	1						AATGGGAATGCGTCGCTATTT	0.403000													8	33					0	0	0.038147	0	0
ITGB5	3693	broad.mit.edu	37	3	124492548	124492548	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:124492548G>A	uc003eho.2	-	11	2202	c.1905C>T	c.(1903-1905)TGC>TGT	p.C635C	ITGB5_uc010hrx.2_RNA|ITGB5_uc003ehp.1_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	635	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		TCTTGGTGCTGCATGCATCCG	0.657000													13	66					0	0	0.033300	0	0
EPHB1	2047	broad.mit.edu	37	3	134977926	134977926	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:134977926G>T	uc003eqt.2	+	16	3139	c.2919G>T	c.(2917-2919)AGG>AGT	p.R973S	EPHB1_uc003equ.2_Missense_Mutation_p.R534S	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	973	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						ATTCTATGAGGGTCCAGATAA	0.502000													9	16					0.00136819	0.0014256	0.013537	1	0
SI	6476	broad.mit.edu	37	3	164786518	164786518	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:164786518G>A	uc003fei.2	-	5	537	c.475C>T	c.(475-477)CGG>TGG	p.R159W		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	159	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACCTTGAACCGGAAACGATTG	0.284000										HNSCC(35;0.089)			19	73					0	0	0.055883	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540344	169540344	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:169540344G>T	uc003fgb.2	+	1	635	c.635G>T	c.(634-636)GGG>GTG	p.G212V		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	212	LRR 9.										0						CACCTGACGGGGCTGCAGAAG	0.527000													21	120					3.5997e-14	4.19027e-14	0.069288	1	0
MASP1	5648	broad.mit.edu	37	3	186974605	186974605	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr3:186974605G>A	uc003frh.1	-	5	923	c.591C>T	c.(589-591)ATC>ATT	p.I197I	MASP1_uc003fri.2_Silent_p.I197I|MASP1_uc003frj.2_Silent_p.I166I|MASP1_uc003frk.1_Silent_p.I197I|MASP1_uc011bse.1_Silent_p.I171I	NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	197	Interaction with FCN2.|CUB 2.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CAGGGCTGGTGATCACCCCAG	0.512000													23	75					0	0	0.054565	0	0
DRD5	1816	broad.mit.edu	37	4	9784092	9784092	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr4:9784092C>T	uc003gmb.3	+	1	835	c.439C>T	c.(439-441)CGC>TGC	p.R147C		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	147	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CAGGCCCTTCCGCTACAAGCG	0.597000													10	24					0	0	0.069234	0	0
MUC7	4589	broad.mit.edu	37	4	71347185	71347185	+	Missense_Mutation	SNP	T	C	C	rs79807294	by1000genomes	TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr4:71347185T>C	uc011cat.1	+	4	1012	c.724T>C	c.(724-726)TCT>CCT	p.S242P	MUC7_uc011cau.1_Missense_Mutation_p.S242P|MUC7_uc003hfj.2_Missense_Mutation_p.S242P|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	242	Thr-rich.|4.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCCACACCTTCTGCAACTAC	0.592000													5	77					0	0	0.014758	0	0
ATOH1	474	broad.mit.edu	37	4	94750467	94750467	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr4:94750467G>C	uc003hta.1	+	1	390	c.390G>C	c.(388-390)AAG>AAC	p.K130N		NM_005172	NP_005163	Q92858	ATOH1_HUMAN	atonal homolog 1	130					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.57e-07)		AGCTGTGCAAGCTGAAAGGCG	0.667000													15	15					0	0	0.049695	0	0
ADH7	131	broad.mit.edu	37	4	100349726	100349726	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr4:100349726T>A	uc003huv.1	-	3	317	c.218A>T	c.(217-219)AAG>ATG	p.K73M		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	73					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	CACTGGAAACTTGGACACCAT	0.438000													32	79					0	0	0.025465	0	0
SLC1A3	6507	broad.mit.edu	37	5	36677020	36677020	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:36677020C>G	uc003jkj.3	+	6	1070	c.594C>G	c.(592-594)AGC>AGG	p.S198R	SLC1A3_uc011cox.1_Missense_Mutation_p.S91R|SLC1A3_uc010iuy.2_Missense_Mutation_p.S198R	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	198	Extracellular (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	AGAAGAGAAGCTTTAAAGTGC	0.328000													3	12					0	0	0.004672	0	0
SLC1A3	6507	broad.mit.edu	37	5	36679892	36679892	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:36679892C>T	uc003jkj.3	+	7	1500	c.1024C>T	c.(1024-1026)CGG>TGG	p.R342W	SLC1A3_uc011cox.1_Missense_Mutation_p.R235W|SLC1A3_uc010iuy.2_Missense_Mutation_p.R342W	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	342					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	CTTGGTAACACGGAAAAACCC	0.488000													28	46					0	0	0.034045	0	0
PAIP1	10605	broad.mit.edu	37	5	43556095	43556095	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:43556095G>C	uc003job.2	-	2	519	c.272C>G	c.(271-273)ACG>AGG	p.T91R	PAIP1_uc003joa.2_Missense_Mutation_p.T12R|PAIP1_uc010ivp.2_Missense_Mutation_p.T12R|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_5'UTR	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	91	Pro-rich.				mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					CAGGGGCCTCGTTTGCTCTGC	0.458000													28	100					0	0	0.041601	0	0
PTCD2	79810	broad.mit.edu	37	5	71616252	71616252	+	Silent	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:71616252C>A	uc003kcb.2	+	1	53	c.43C>A	c.(43-45)CGA>AGA	p.R15R	MRPS27_uc003kca.3_5'Flank|MRPS27_uc003kbz.3_5'Flank|MRPS27_uc011cse.1_5'Flank|MRPS27_uc010iza.2_5'Flank|PTCD2_uc011csf.1_5'UTR|PTCD2_uc003kcc.2_5'UTR|PTCD2_uc011csg.1_5'UTR|PTCD2_uc011csh.1_Silent_p.R15R|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	15											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		GCCCTCGAATCGAGTTCTCCT	0.627000													15	40					0.00074312	0.000779753	0.038395	1	0
CRHBP	1393	broad.mit.edu	37	5	76248859	76248859	+	Translation_Start_Site	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:76248859G>T	uc003ker.2	+	1	180	c.-100G>T	c.(-102--98)AAGGG>AATGG		CRHBP_uc010izx.2_Translation_Start_Site	NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein						female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		ACCCAGCAAAGGGACCCTACC	0.577000													3	4					6.4e-05	6.91167e-05	0.004672	1	0
OTP	23440	broad.mit.edu	37	5	76932909	76932909	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:76932909C>T	uc003kfg.2	-	2	332	c.184G>A	c.(184-186)GAC>AAC	p.D62N		NM_032109	NP_115485	Q5XKR4	OTP_HUMAN	orthopedia homeobox	62						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.000601)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;9.04e-51)|Epithelial(54;1.62e-45)|all cancers(79;4.4e-41)		GTGGTGATGTCCTCCCCGGGC	0.731000													7	9					0	0	0.058154	0	0
CMYA5	202333	broad.mit.edu	37	5	79032476	79032476	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:79032476G>A	uc003kgc.2	+	2	7960	c.7888G>A	c.(7888-7890)GAG>AAG	p.E2630K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2630						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGTTTTGGTGGAGAAAACCAA	0.428000													10	39					0	0	0.013537	0	0
MAN2A1	4124	broad.mit.edu	37	5	109191010	109191010	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:109191010T>G	uc003kou.1	+	20	4109	c.3146T>G	c.(3145-3147)GTT>GGT	p.V1049G		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	1049	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		ATTCATCTGGTTAATTTGAGA	0.358000													7	21					0	0	0.038147	0	0
TIMD4	91937	broad.mit.edu	37	5	156381695	156381695	+	Missense_Mutation	SNP	G	A	A	rs115724540	byFrequency	TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:156381695G>A	uc003lwh.2	-	2	188	c.131C>T	c.(130-132)TCC>TTC	p.S44F	TIMD4_uc010jii.2_Missense_Mutation_p.S44F	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	44	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGAGACCAGGATGAGTACAG	0.542000													45	42					0	0	0.048971	0	0
GABRB2	2561	broad.mit.edu	37	5	160886792	160886792	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr5:160886792T>C	uc003lys.1	-	5	514	c.296A>G	c.(295-297)AAT>AGT	p.N99S	GABRB2_uc011deh.1_Intron|GABRB2_uc003lyr.1_Missense_Mutation_p.N99S|GABRB2_uc003lyt.1_Missense_Mutation_p.N99S|GABRB2_uc010jiu.1_Missense_Mutation_p.N36S|GABRB2_uc011dei.1_Missense_Mutation_p.N99S	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	99	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AGGTATTACATTATAGGACAG	0.408000													10	37					0	0	0.024245	0	0
SLC22A23	63027	broad.mit.edu	37	6	3273470	3273470	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr6:3273470G>A	uc003mvm.3	-	10	1880	c.1880C>T	c.(1879-1881)CCT>CTT	p.P627L	uc003mvi.1_Intron|SLC22A23_uc003mvn.3_Missense_Mutation_p.P346L|SLC22A23_uc003mvo.3_Missense_Mutation_p.P346L|SLC22A23_uc003mvp.1_RNA	NM_015482	NP_056297	A1A5C7	S22AN_HUMAN	solute carrier family 22, member 23 isoform a	627					ion transport	integral to membrane	transmembrane transporter activity			ovary(1)	1	Ovarian(93;0.0493)	all_hematologic(90;0.0905)				AATGTTCTCAGGCAGGTTCTG	0.488000													27	153					0	0	0.054565	0	0
OR2W1	26692	broad.mit.edu	37	6	29012357	29012357	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr6:29012357A>G	uc003nlw.2	-	1	596	c.596T>C	c.(595-597)GTT>GCT	p.V199A		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TAAAGCGAAAACAGACATTTC	0.418000													28	139					0	0	0.030593	0	0
HSPA1L	3305	broad.mit.edu	37	6	31777892	31777892	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr6:31777892G>C	uc003nxh.2	-	2	2041	c.1858C>G	c.(1858-1860)CCT>GCT	p.P620A	HSPA1L_uc010jte.2_Missense_Mutation_p.P620A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	620					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCGCAGGCAGGCCCAGTGCAT	0.468000													15	87					0	0	0.028581	0	0
BAI3	577	broad.mit.edu	37	6	69646417	69646417	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr6:69646417C>A	uc003pev.3	+	5	1323	c.875C>A	c.(874-876)TCT>TAT	p.S292Y	BAI3_uc010kak.2_Missense_Mutation_p.S292Y	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	292	TSP type-1 1.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GCAGGTGAATCTGGTGTGGAA	0.433000													13	51					3.45872e-05	3.8174e-05	0.028581	1	0
ZNF479	90827	broad.mit.edu	37	7	57187725	57187725	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:57187725G>T	uc010kzo.2	-	5	1668	c.1397C>A	c.(1396-1398)ACA>AAA	p.T466K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	466	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATGTGTAGGGTCT	0.428000													4	202					0.00909568	0.0093466	0.009096	1	0
CROT	54677	broad.mit.edu	37	7	87011494	87011494	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:87011494G>T	uc003uit.2	+	12	1412	c.1167G>T	c.(1165-1167)AGG>AGT	p.R389S	CROT_uc003uiu.2_Missense_Mutation_p.R417S	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	389					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	AGTATCTCAGGGAGGTATATT	0.343000													7	31					5.18039e-06	5.76029e-06	0.038147	1	0
AKAP9	10142	broad.mit.edu	37	7	91631838	91631838	+	Silent	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:91631838T>C	uc003ulg.2	+	8	2832	c.2607T>C	c.(2605-2607)GCT>GCC	p.A869A	AKAP9_uc003ule.2_Silent_p.A881A|AKAP9_uc003ulf.2_Silent_p.A869A|AKAP9_uc003uli.2_Silent_p.A494A	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	881	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGGAGTATGCTTGCCTTCTCA	0.303000			T	BRAF	papillary thyroid								7	41					0	0	0.047766	0	0
TRRAP	8295	broad.mit.edu	37	7	98543392	98543392	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:98543392G>C	uc003upp.2	+	32	4705	c.4496G>C	c.(4495-4497)AGA>ACA	p.R1499T	TRRAP_uc011kis.1_Intron|TRRAP_uc003upr.2_Missense_Mutation_p.R1191T	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1499					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GAGTGCGGGAGATGTCCCTTG	0.358000													20	73					0	0	0.034045	0	0
TRRAP	8295	broad.mit.edu	37	7	98557029	98557030	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:98557029_98557030CC>TT	uc003upp.2	+	44	6593_6594	c.6384_6385CC>TT	c.(6382-6387)AACCTT>AATTTT	p.L2129F	TRRAP_uc011kis.1_Missense_Mutation_p.L2111F|TRRAP_uc003upr.2_Missense_Mutation_p.L1828F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2129	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGTGTGTGAACCTTCTGAAGAC	0.564000													23	57					0	0	0.004672	0	0
TRRAP	8295	broad.mit.edu	37	7	98558887	98558887	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:98558887C>T	uc003upp.2	+	45	6681	c.6472C>T	c.(6472-6474)CAG>TAG	p.Q2158*	TRRAP_uc011kis.1_Nonsense_Mutation_p.Q2140*|TRRAP_uc003upr.2_Nonsense_Mutation_p.Q1857*	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2158	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ATTGCAGGAGCAGCCAAACCA	0.473000													23	130					0	0	0.064281	0	0
TRRAP	8295	broad.mit.edu	37	7	98558955	98558955	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:98558955C>T	uc003upp.2	+	45	6749	c.6540C>T	c.(6538-6540)GTC>GTT	p.V2180V	TRRAP_uc011kis.1_Silent_p.V2162V|TRRAP_uc003upr.2_Silent_p.V1879V	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2180	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGCTAACTGTCCTCCAGTCCC	0.547000													26	112					0	0	0.034045	0	0
TRRAP	8295	broad.mit.edu	37	7	98558973	98558973	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:98558973C>T	uc003upp.2	+	45	6767	c.6558C>T	c.(6556-6558)ATC>ATT	p.I2186I	TRRAP_uc011kis.1_Silent_p.I2168I|TRRAP_uc003upr.2_Silent_p.I1885I	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2186	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCCCAGCCATCCTCAGTAGCT	0.557000													24	102					0	0	0.018920	0	0
ZAN	7455	broad.mit.edu	37	7	100361701	100361701	+	Silent	SNP	T	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:100361701T>G	uc003uwj.2	+	22	4314	c.4149T>G	c.(4147-4149)CTT>CTG	p.L1383L	ZAN_uc003uwk.2_Silent_p.L1383L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1383	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GCTGCATGCTTGATATGTGCG	0.607000													23	52					0	0	0.027356	0	0
MUC17	140453	broad.mit.edu	37	7	100680525	100680525	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:100680525T>C	uc003uxp.1	+	3	5881	c.5828T>C	c.(5827-5829)ATC>ACC	p.I1943T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1943	Extracellular (Potential).|30.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGTTCTGAAATCAACACCCTT	0.498000													5	442					0	0	0.038147	0	0
SND1	27044	broad.mit.edu	37	7	127343357	127343357	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:127343357C>G	uc003vmi.2	+	7	1046	c.820C>G	c.(820-822)CTG>GTG	p.L274V		NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	274	TNase-like 2.			L -> V (in Ref. 1; AAA80488).	gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						CCAGAACATTCTGGGTACCAT	0.488000													19	77					0	0	0.021523	0	0
KCNH2	3757	broad.mit.edu	37	7	150648643	150648643	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:150648643G>A	uc003wic.2	-	7	1851	c.1838C>T	c.(1837-1839)ACG>ATG	p.T613M	KCNH2_uc003wib.2_Missense_Mutation_p.T273M|KCNH2_uc011kux.1_Missense_Mutation_p.T517M|KCNH2_uc003wid.2_Missense_Mutation_p.T273M|KCNH2_uc003wie.2_Missense_Mutation_p.T613M	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	613			T -> M (in LQT2).		blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GTAGAGCGCCGTCACATACTT	0.587000													22	67					0	0	0.021523	0	0
CSMD1	64478	broad.mit.edu	37	8	2824186	2824186	+	Silent	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr8:2824186G>T	uc011kwk.1	-	58	9399	c.9009C>A	c.(9007-9009)ATC>ATA	p.I3003I	CSMD1_uc011kwj.1_Silent_p.I2332I|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3003	Extracellular (Potential).|Sushi 23.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGCAGGCATAGATGACCGAGC	0.547000													14	70					7.87624e-14	9.09737e-14	0.076483	1	0
CSMD1	64478	broad.mit.edu	37	8	2824193	2824193	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr8:2824193G>T	uc011kwk.1	-	58	9392	c.9002C>A	c.(9001-9003)TCG>TAG	p.S3001*	CSMD1_uc011kwj.1_Nonsense_Mutation_p.S2330*|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3001	Extracellular (Potential).|Sushi 23.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATAGATGACCGAGCTGGAGAA	0.562000													18	73					2.44723e-14	2.87116e-14	0.024334	1	0
ANK1	286	broad.mit.edu	37	8	41525969	41525969	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr8:41525969G>A	uc003xok.2	-	39	5294	c.5210C>T	c.(5209-5211)ACC>ATC	p.T1737I	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.T891I|ANK1_uc003xoi.2_Missense_Mutation_p.T1737I|ANK1_uc003xoj.2_Missense_Mutation_p.T1737I|ANK1_uc003xol.2_Missense_Mutation_p.T1575I|ANK1_uc003xom.2_Missense_Mutation_p.T1778I	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1737	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TTCAGTCATGGTACTTGTTCC	0.557000													25	66					0	0	0.034045	0	0
KIAA0146	23514	broad.mit.edu	37	8	48626202	48626202	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr8:48626202A>T	uc003xqd.2	+	16	2349	c.2340A>T	c.(2338-2340)CAA>CAT	p.Q780H	KIAA0146_uc011ldc.1_Missense_Mutation_p.Q710H|KIAA0146_uc011ldd.1_Missense_Mutation_p.Q720H|KIAA0146_uc003xqe.2_Missense_Mutation_p.Q255H|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc010lxt.2_Missense_Mutation_p.Q469H|KIAA0146_uc011ldf.1_Missense_Mutation_p.Q285H|KIAA0146_uc011ldg.1_Missense_Mutation_p.Q270H|KIAA0146_uc003xqg.1_RNA	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	780											0		Lung NSC(58;0.175)				GCAGTGTTCAAGGTAGGCAGC	0.398000													9	66					0	0	0.058154	0	0
PXDNL	137902	broad.mit.edu	37	8	52232505	52232505	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr8:52232505G>A	uc003xqu.3	-	23	4439	c.4338C>T	c.(4336-4338)TGC>TGT	p.C1446C	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1446	VWFC.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AAACTGGACAGCAGGTTCCTT	0.512000													3	44					0	0	0.009096	0	0
PREX2	80243	broad.mit.edu	37	8	69103986	69103986	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr8:69103986C>G	uc003xxv.1	+	36	4403	c.4376C>G	c.(4375-4377)CCA>CGA	p.P1459R		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1459					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TCAAATTCACCACCAAACTCC	0.308000													13	77					0	0	0.049695	0	0
CSMD3	114788	broad.mit.edu	37	8	113529334	113529334	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr8:113529334C>G	uc003ynu.2	-	28	4844	c.4685G>C	c.(4684-4686)GGA>GCA	p.G1562A	CSMD3_uc003yns.2_Missense_Mutation_p.G834A|CSMD3_uc003ynt.2_Missense_Mutation_p.G1522A|CSMD3_uc011lhx.1_Missense_Mutation_p.G1458A	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1562	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCTTTCCTCTCCTTGAAGTTC	0.448000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			25	92					0	0	0.050027	0	0
MTAP	4507	broad.mit.edu	37	9	21859395	21859395	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr9:21859395G>A	uc003zph.2	+	7	897	c.784G>A	c.(784-786)GAA>AAA	p.E262K	MTAP_uc003zpi.1_Intron|MTAP_uc010mit.2_RNA|MTAP_uc011lnk.1_Missense_Mutation_p.E279K|MTAP_uc011lnl.1_Missense_Mutation_p.E195K	NM_002451	NP_002442	Q13126	MTAP_HUMAN	5'-methylthioadenosine phosphorylase	262					nucleoside metabolic process	cytoplasm	phosphorylase activity|S-methyl-5-thioadenosine phosphorylase activity			central_nervous_system(1)	1		all_cancers(5;0)|Hepatocellular(5;0.00162)|Colorectal(97;0.173)		GBM - Glioblastoma multiforme(3;0)|Lung(24;2.24e-57)|LUSC - Lung squamous cell carcinoma(38;1.97e-36)|STAD - Stomach adenocarcinoma(4;3.26e-05)|OV - Ovarian serous cystadenocarcinoma(39;0.00931)|COAD - Colon adenocarcinoma(8;0.15)	Adenine(DB00173)	AGGGTCCACAGAATGGTCAGA	0.443000													10	52					0	0	0.010729	0	0
TEK	7010	broad.mit.edu	37	9	27206675	27206675	+	Silent	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr9:27206675C>T	uc003zqi.3	+	15	2902	c.2460C>T	c.(2458-2460)GAC>GAT	p.D820D	TEK_uc011lno.1_Silent_p.D777D|TEK_uc011lnp.1_Silent_p.D672D|TEK_uc003zqj.1_Silent_p.D754D	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	820	Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CAGTGCTTGACTGGAATGACA	0.478000													12	44					0	0	0.020292	0	0
KIAA1529	57653	broad.mit.edu	37	9	100124130	100124130	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr9:100124130G>A	uc011lut.1	+	39	4928	c.4155G>A	c.(4153-4155)GGG>GGA	p.G1385G	KIAA1529_uc004axe.1_Silent_p.G1217G|KIAA1529_uc004axg.1_Silent_p.G1246G|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Silent_p.G402G	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				GCCGCGTGGGGAAGCCCCTGA	0.617000													11	38					0	0	0.016723	0	0
SH2D3C	10044	broad.mit.edu	37	9	130504196	130504196	+	Silent	SNP	G	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr9:130504196G>T	uc004bsc.2	-	9	2101	c.1959C>A	c.(1957-1959)GGC>GGA	p.G653G	SH2D3C_uc010mxo.2_Silent_p.G493G|SH2D3C_uc004bry.2_Silent_p.G495G|SH2D3C_uc004brz.3_Silent_p.G299G|SH2D3C_uc011mak.1_Silent_p.G299G|SH2D3C_uc004bsa.2_Silent_p.G496G|SH2D3C_uc004bsb.2_Silent_p.G585G	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	653	Ras-GEF.				JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						AGCCGGTGCAGCCCAGGATGT	0.687000													6	34					5.9392e-07	6.65369e-07	0.021553	1	0
DCAF8L1	139425	broad.mit.edu	37	X	27999153	27999153	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:27999153C>A	uc004dbx.1	-	1	414	c.299G>T	c.(298-300)AGG>ATG	p.R100M		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	100	Glu-rich.									ovary(3)|skin(1)	4						ttcctcctccCTTTCTGTCTC	0.358000													24	43					1.96895e-08	2.22252e-08	0.076483	1	0
FAM47C	442444	broad.mit.edu	37	X	37027156	37027156	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:37027156C>G	uc004ddl.1	+	1	687	c.673C>G	c.(673-675)CAG>GAG	p.Q225E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	225										ovary(3)	3						TCTCCGCCCACAGCCTCCCAA	0.647000													3	65					0	0	0.009096	0	0
FAM47C	442444	broad.mit.edu	37	X	37027200	37027200	+	Silent	SNP	A	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:37027200A>C	uc004ddl.1	+	1	731	c.717A>C	c.(715-717)CCA>CCC	p.P239P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	239										ovary(3)	3						TGGAGCCTCCAGAGACTGGAG	0.637000													3	63					0	0	0.004672	0	0
WAS	7454	broad.mit.edu	37	X	48547271	48547271	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:48547271C>T	uc004dkm.3	+	10	1211	c.1154C>T	c.(1153-1155)CCC>CTC	p.P385L		NM_000377	NP_000368	P42768	WASP_HUMAN	Wiskott-Aldrich syndrome protein	385	Poly-Pro.|GRSGPLPPXP motif 2.				blood coagulation|defense response|epidermis development|immune response|T cell receptor signaling pathway	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			ovary(1)	1		all_lung(315;1.27e-10)				CCCCCTCCACCCCCTGGAGCT	0.612000			Mis|N|F|S			lymphoma			Wiskott-Aldrich_syndrome				3	7					0	0	0.004672	0	0
ATRX	546	broad.mit.edu	37	X	76931728	76931728	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:76931728C>A	uc004ecp.3	-	10	4034	c.3802G>T	c.(3802-3804)GAG>TAG	p.E1268*	ATRX_uc004ecq.3_Nonsense_Mutation_p.E1230*|ATRX_uc004eco.3_Nonsense_Mutation_p.E1053*|ATRX_uc004ecr.2_Nonsense_Mutation_p.E1200*	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1268					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TACCTATTCTCAGGATCATTG	0.398000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						22	52					1.77063e-15	2.09384e-15	0.027356	1	0
LOC643486	643486	broad.mit.edu	37	X	95592522	95592522	+	RNA	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:95592522T>C	uc010nmx.2	-	1		c.380A>G				NR_003539				Homo sapiens cDNA FLJ42288 fis, clone TLIVE2006236.												0						TGTCTTTTGTTCCAAATGTCT	0.383000													11	10					0	0	0.016723	0	0
DIAPH2	1730	broad.mit.edu	37	X	96369879	96369879	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:96369879A>T	uc004efu.3	+	21	2900	c.2504A>T	c.(2503-2505)GAG>GTG	p.E835V	DIAPH2_uc004eft.3_Missense_Mutation_p.E835V	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	835	FH2.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						AGACTTTTAGAGTTAGTTCTT	0.358000													10	14					0	0	0.058154	0	0
CXorf66	347487	broad.mit.edu	37	X	139038312	139038312	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:139038312T>C	uc004fbb.2	-	3	851	c.829A>G	c.(829-831)AAA>GAA	p.K277E		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	277	Cytoplasmic (Potential).					integral to membrane					0						CTATAAGTTTTGGCAACAAGA	0.398000													31	33					0	0	0.059317	0	0
PASD1	139135	broad.mit.edu	37	X	150773187	150773187	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:150773187T>A	uc004fev.3	+	3	430	c.98T>A	c.(97-99)TTC>TAC	p.F33Y		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	33	PAS.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TATGATTACTTCAACCAAGTG	0.318000													4	92					0	0	0.014758	0	0
PLXNA3	55558	broad.mit.edu	37	X	153688986	153688986	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:153688986A>G	uc004flm.2	+	2	636	c.463A>G	c.(463-465)ATT>GTT	p.I155V		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	155	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGCTGGTGTCATTGTGGAGCA	0.637000													34	177					0	0	0.064281	0	0
CTAG2	30848	broad.mit.edu	37	X	153880704	153880704	+	Silent	SNP	G	A	A			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chrX:153880704G>A	uc004fmi.1	-	2	524	c.471C>T	c.(469-471)TCC>TCT	p.S157S	CTAG2_uc004fmh.1_Intron	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	157						centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCGGGGAGGCGGATCCCAGCC	0.622000													5	220					0	0	0.014758	0	0
CD247	919	broad.mit.edu	37	1	167408580	167408580	+	Splice_Site	DEL	C	-	-			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr1:167408580delC	uc001gei.3	-	3	364	c.219_splice	c.e3+1	p.N73_splice	CD247_uc001gej.3_Splice_Site_p.N73_splice|CD247_uc001gek.2_Splice_Site_p.N73_splice	NM_198053	NP_932170	P20963	CD3Z_HUMAN	T-cell receptor zeta chain isoform 1 precursor						interspecies interaction between organisms|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytoplasm|integral to membrane	protein homodimerization activity|transmembrane receptor activity				0			LUSC - Lung squamous cell carcinoma(543;0.236)			GGCTGACTTACGTTATAGAGC	0.542													31	175	---	---	---	---					
OR5D13	390142	broad.mit.edu	37	11	55541558	55541565	+	Frame_Shift_Del	DEL	CATTCTGA	-	-			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr11:55541558_55541565delCATTCTGA	uc010ril.1	+	1	645_652	c.645_652delCATTCTGA	c.(643-654)ATCATTCTGACAfs	p.I215fs		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	215_218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				GCCTAATTATCATTCTGACATCATATAT	0.442													13	105	---	---	---	---					
WIPF1	7456	broad.mit.edu	37	2	175440027	175440041	+	In_Frame_Del	DEL	CCTCCGCCACCACCT	-	-			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr2:175440027_175440041delCCTCCGCCACCACCT	uc002uiy.2	-	5	581_595	c.249_263delAGGTGGTGGCGGAGG	c.(247-264)GGAGGTGGTGGCGGAGGC>GGC	p.83_88GGGGGG>G	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_In_Frame_Del_p.83_88GGGGGG>G|WIPF1_uc010fqt.1_In_Frame_Del_p.83_88GGGGGG>G|WIPF1_uc002ujc.1_In_Frame_Del_p.83_88GGGGGG>G|WIPF1_uc002uiz.2_In_Frame_Del_p.83_88GGGGGG>G|WIPF1_uc002ujb.1_In_Frame_Del_p.83_88GGGGGG>G|WIPF1_uc010zep.1_In_Frame_Del_p.83_88GGGGGG>G	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	83_88	Gly-rich.				actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						acttccaccgcctccgccaccacctcctccgccaa	0.302													34	83	---	---	---	---					
MEPCE	56257	broad.mit.edu	37	7	100028370	100028392	+	Frame_Shift_Del	DEL	TTGCACTGATGAGGGCCATGTAG	-	-			TCGA-ER-A3ET-06A-11D-A20D-08	TCGA-ER-A3ET-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	27fe0dd4-09fc-4c5b-89e9-bacdfddb1722	0e516b54-0c82-4a60-a7bd-d2de9940daf4	g.chr7:100028370_100028392delTTGCACTGATGAGGGCCATGTAG	uc003uuw.2	+	1	842_864	c.729_751delTTGCACTGATGAGGGCCATGTAG	c.(727-753)ACTTGCACTGATGAGGGCCATGTAGTTfs	p.T243fs	ZCWPW1_uc003uut.2_5'Flank|ZCWPW1_uc011kjr.1_5'Flank|ZCWPW1_uc003uuu.1_5'Flank|ZCWPW1_uc011kjt.1_5'Flank|ZCWPW1_uc011kju.1_5'Flank|MEPCE_uc003uuv.2_5'UTR	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	243_251							methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GTCTCAATACTTGCACTGATGAGGGCCATGTAGTTCTTGCTTC	0.592													22	398	---	---	---	---					
