Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
COL5A3	50509	broad.mit.edu	37	19	10116500	10116500	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr19:10116500G>A	uc002mmq.1	-	3	495	c.409C>T	c.(409-411)CCC>TCC	p.P137S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	137	TSP N-terminal.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			ACCTGCTGGGGGAGGGGGCGG	0.657000													7	9	---	---	---	---	0	0	8.12818e-05	0	0
IRS1	3667	broad.mit.edu	37	2	227663266	227663266	+	Silent	SNP	C	A	A			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr2:227663266C>A	uc002voh.3	-	1	241	c.189G>T	c.(187-189)TCG>TCT	p.S63S		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	63	PH.|Mediates interaction with PHIP (By similarity).				fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		CAAGGGGGATCGAGCGTTTGG	0.637000													21	148	---	---	---	---	3.62473e-10	1.47809e-08	0.00188189	1	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr20:29628243T>C	uc010ztl.1	+	3	187	c.155T>C	c.(154-156)TTG>TCG	p.L52S	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.L4S					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGGCTTTGTTGGCCTCAAAT	0.353000													8	178	---	---	---	---	0	0	0.000274275	0	0
ZNF777	27153	broad.mit.edu	37	7	149129472	149129472	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr7:149129472C>G	uc003wfv.2	-	6	2054	c.1891G>C	c.(1891-1893)GGT>CGT	p.G631R		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	631	Poly-Gly.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TTAGGGCCACCGCCGCCGCTA	0.667000													32	106	---	---	---	---	0	0	0.000491102	0	0
OC90	729330	broad.mit.edu	37	8	133053841	133053841	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr8:133053841C>T	uc003ytg.2	-	3	227	c.227G>A	c.(226-228)CGA>CAA	p.R76Q	OC90_uc011lix.1_Missense_Mutation_p.R92Q	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	92	Phospholipase A2-like 1.				lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			TTCAAAGTCTCGGGGGCAGAG	0.527000													7	13	---	---	---	---	0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	9	68728848	68728848	+	RNA	SNP	A	C	C			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr9:68728848A>C	uc004aez.1	+	3		c.689A>C			uc004afa.1_RNA|uc010mnp.1_RNA					Homo sapiens cDNA, FLJ18209.																		aagaagaaaaagagcaaagat	0.204000													9	61	---	---	---	---	0	0	0.000673444	0	0
HAUS7	55559	broad.mit.edu	37	X	152734614	152734614	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chrX:152734614T>C	uc004fho.1	-	2	802	c.244A>G	c.(244-246)ATG>GTG	p.M82V	HAUS7_uc004fhl.2_RNA|HAUS7_uc004fhm.2_RNA|HAUS7_uc004fhn.1_Missense_Mutation_p.M82V|HAUS7_uc004fhp.1_RNA|HAUS7_uc011myq.1_RNA	NM_017518	NP_059988	Q99871	HAUS7_HUMAN	HAUS augmin-like complex subunit 7	82					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleolus|plasma membrane|spindle	thioesterase binding				0						CGGGTACACATCCACTCTAGG	0.552000													41	77	---	---	---	---	0	0	0.000781405	0	0
AHDC1	27245	broad.mit.edu	37	1	27877329	27877331	+	In_Frame_Del	DEL	GGT	-	-			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr1:27877329_27877331delGGT	uc009vsy.2	-	6	2265_2267	c.1296_1298delACC	c.(1294-1299)CCACCG>CCG	p.432_433PP>P	AHDC1_uc009vsz.1_In_Frame_Del_p.432_433PP>P	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	432_433	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		TGGAGGAGGCGGTGGTGGTGGGG	0.714													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	208870615	208870616	+	IGR	INS	-	T	T			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr1:208870615_208870616insT								PLXNA2 (452950 upstream) : LOC642587 (731552 downstream)																							tgaaccacctcttTTTTTTTTT	0.173													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	64975077	64975078	+	IGR	INS	-	AGAC	AGAC			TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr7:64975077_64975078insAGAC								ZNF92 (109080 upstream) : INTS4L2 (137699 downstream)																							AGTGCACCCGAAAACAAAGATG	0.455													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	101908414	101908414	+	IGR	DEL	A	-	-	rs112706717		TCGA-ET-A39R-01A-11D-A19J-08	TCGA-ET-A39R-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc29bed0-8ced-477b-8b69-3db24426a0b9	ec696761-1a5e-4925-b59b-e3e9d42edc7d	g.chr8:101908414delA								PABPC1 (174099 upstream) : YWHAZ (22390 downstream)																							AATTGTACTTAAAAAAAAAAA	0.438													3	3	---	---	---	---					
