Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TAS1R3	83756	broad.mit.edu	37	1	1269087	1269087	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr1:1269087C>T	uc010nyk.1	+	6	1802	c.1802C>T	c.(1801-1803)GCC>GTC	p.A601V		NM_152228	NP_689414	Q7RTX0	TS1R3_HUMAN	taste receptor, type 1, member 3 precursor	601	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste|sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.88e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.146)	Aspartame(DB00168)	CTGGTTCAGGCCTCGGGGGGG	0.378													3	13	---	---	---	---	0	0	0.150653	0	0
ESPNP	284729	broad.mit.edu	37	1	17017739	17017739	+	Silent	SNP	G	A	A			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr1:17017739G>A	uc001azn.1	-	11	1989	c.1875C>T	c.(1873-1875)CTC>CTT	p.L625L		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						TCTTCCGCAGGAGGTCCCACC	0.652													11	27	---	---	---	---	0	0	0.411799	0	0
C1orf213	148898	broad.mit.edu	37	1	23696056	23696056	+	Missense_Mutation	SNP	T	A	A			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr1:23696056T>A	uc001bgw.2	+	1	593	c.266T>A	c.(265-267)CTG>CAG	p.L89Q	ZNF436_uc001bgt.2_5'Flank|ZNF436_uc001bgu.2_5'UTR|C1orf213_uc001bgv.2_Intron	NM_138479	NP_612488			hypothetical protein LOC148898 isoform 1												0		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.97e-26)|Colorectal(126;4.8e-08)|COAD - Colon adenocarcinoma(152;2.83e-06)|GBM - Glioblastoma multiforme(114;5.23e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0827)|LUSC - Lung squamous cell carcinoma(448;0.184)		TATCGTAGGCTGATCCTAAAG	0.567													13	35	---	---	---	---	0	0	0.435327	0	0
SLFNL1	200172	broad.mit.edu	37	1	41486324	41486324	+	Silent	SNP	G	C	C			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr1:41486324G>C	uc001cgm.1	-	2	229	c.9C>G	c.(7-9)CCC>CCG	p.P3P	SLFNL1_uc009vwf.1_Silent_p.P3P|SLFNL1_uc001cgn.1_Silent_p.P3P|SLFNL1_uc009vwg.1_Silent_p.P3P	NM_144990	NP_659427	Q499Z3	SLNL1_HUMAN	schlafen-like 1	3							ATP binding			skin(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0393)				ATCTCTTCATGGGGGTCATGG	0.602													4	30	---	---	---	---	0	0	0.150653	0	0
NFIA	4774	broad.mit.edu	37	1	61743213	61743213	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr1:61743213C>G	uc001czw.2	+	3	1065	c.581C>G	c.(580-582)CCC>CGC	p.P194R	NFIA_uc001czy.2_Missense_Mutation_p.P186R|NFIA_uc010oos.1_Missense_Mutation_p.P239R|NFIA_uc001czv.2_Missense_Mutation_p.P194R	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	194	CTF/NF-I.				DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						TCTGAAAGTCCCAGCCAGCCA	0.458													22	46	---	---	---	---	0	0	0.608945	0	0
LIG4	3981	broad.mit.edu	37	13	108861705	108861705	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr13:108861705T>C	uc001vqn.2	-	2	2185	c.1912A>G	c.(1912-1914)ATT>GTT	p.I638V	LIG4_uc001vqo.2_Missense_Mutation_p.I638V|LIG4_uc010agg.1_Missense_Mutation_p.I571V|LIG4_uc010agf.2_Missense_Mutation_p.I638V|LIG4_uc001vqp.2_Missense_Mutation_p.I638V	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	638					cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					ATAATTCCAATAACTTTCTTC	0.358								NHEJ					26	51	---	---	---	---	0	0	0.654019	0	0
CGNL1	84952	broad.mit.edu	37	15	57730273	57730273	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr15:57730273A>G	uc002aeg.2	+	2	152	c.76A>G	c.(76-78)ACC>GCC	p.T26A	CGNL1_uc010bfw.2_Missense_Mutation_p.T26A	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	26	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AAGTGATGATACCCAAAAATC	0.483													12	169	---	---	---	---	0	0	0.387290	0	0
TMEM204	79652	broad.mit.edu	37	16	1591953	1591953	+	Silent	SNP	G	A	A			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr16:1591953G>A	uc002cmc.2	+	3	710	c.312G>A	c.(310-312)CTG>CTA	p.L104L	IFT140_uc002clz.2_Intron|IFT140_uc002cmb.2_Intron|TMEM204_uc002cmd.2_Silent_p.L104L|TMEM204_uc010brr.1_Silent_p.L104L	NM_024600	NP_078876	Q9BSN7	TM204_HUMAN	transmembrane protein 204	104	Helical; (Potential).				response to stress	adherens junction|integral to membrane					0		Hepatocellular(780;0.219)				CCTGCAACCTGGTGGCCACGG	0.701													3	35	---	---	---	---	0	0	0.115264	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904139	21904139	+	RNA	SNP	T	G	G			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr17:21904139T>G	uc002gza.2	+	1		c.78T>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ccgagcaggatgaggaaacca	0													3	38	---	---	---	---	0	0	0.150653	0	0
GPR179	440435	broad.mit.edu	37	17	36487270	36487270	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr17:36487270C>T	uc002hpz.2	-	11	2203	c.2182G>A	c.(2182-2184)GAG>AAG	p.E728K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	728	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GCCAGGGCCTCGGGGAATTCC	0.687													3	25	---	---	---	---	0	0	0.115264	0	0
NLRP4	147945	broad.mit.edu	37	19	56363698	56363698	+	Silent	SNP	C	T	T			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr19:56363698C>T	uc002qmd.3	+	2	674	c.252C>T	c.(250-252)CTC>CTT	p.L84L		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	84	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GAAAGGATCTCTGCATGAAGG	0.443													4	60	---	---	---	---	0	0	0.150653	0	0
TTN	7273	broad.mit.edu	37	2	179474597	179474597	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr2:179474597C>G	uc010zfg.1	-	221	44073	c.43849G>C	c.(43849-43851)GAG>CAG	p.E14617Q	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E8312Q|TTN_uc010zfi.1_Missense_Mutation_p.E8245Q|TTN_uc010zfj.1_Missense_Mutation_p.E8120Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15544							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAATCTTCTCTATGATGTAG	0.438													9	296	---	---	---	---	0	0	0.361761	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46067139	46067139	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr21:46067139C>T	uc002zfr.3	+	1	809	c.764C>T	c.(763-765)TCC>TTC	p.S255F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	255	25 X 5 AA repeats of C-C-X(3).					keratin filament				ovary(1)	1						CCCGTCTCCTCCTGCTGTGCC	0.701													8	78	---	---	---	---	0	0	0.278610	0	0
GPR98	84059	broad.mit.edu	37	5	90074772	90074772	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr5:90074772G>A	uc003kju.2	+	64	13036	c.12940G>A	c.(12940-12942)GAT>AAT	p.D4314N	GPR98_uc003kjt.2_Missense_Mutation_p.D2020N|GPR98_uc003kjw.2_5'Flank	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4314	Extracellular (Potential).|Calx-beta 29.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGCAGGCTTGGATTTTGTTCC	0.493													8	114	---	---	---	---	0	0	0.307466	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				16	45	---	---	---	---	0	0	0.557998	0	0
PLEC	5339	broad.mit.edu	37	8	145009393	145009393	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr8:145009393C>A	uc003zaf.1	-	7	1272	c.1102G>T	c.(1102-1104)GGA>TGA	p.G368*	PLEC_uc003zab.1_Nonsense_Mutation_p.G231*|PLEC_uc003zac.1_Nonsense_Mutation_p.G235*|PLEC_uc003zad.2_Nonsense_Mutation_p.G231*|PLEC_uc003zae.1_Nonsense_Mutation_p.G199*|PLEC_uc003zag.1_Nonsense_Mutation_p.G209*|PLEC_uc003zah.2_Nonsense_Mutation_p.G217*|PLEC_uc003zaj.2_Nonsense_Mutation_p.G258*	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	368	CH 2.|Globular 1.|Actin-binding.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CGCGTCACTCCCAGGTCCCGC	0.657													4	24	---	---	---	---	0.00909568	0.00937131	0.150653	1	0
GALT	2592	broad.mit.edu	37	9	34649475	34649475	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr9:34649475C>T	uc003zve.2	+	10	1040	c.973C>T	c.(973-975)CCG>TCG	p.P325S	GALT_uc003zvf.2_Missense_Mutation_p.P216S|GALT_uc003zvg.2_Missense_Mutation_p.P197S|GALT_uc003zvh.2_Missense_Mutation_p.P277S|IL11RA_uc003zvi.2_5'Flank|IL11RA_uc011loq.1_5'Flank	NM_000155	NP_000146	P07902	GALT_HUMAN	galactose-1-phosphate uridylyltransferase	325			P -> L (in GALCT).		galactose catabolic process	cytosol	UDP-glucose:hexose-1-phosphate uridylyltransferase activity|zinc ion binding				0	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		TTACTACCCTCCGCTCCTGCG	0.577									Galactosemia				5	108	---	---	---	---	0	0	0.217242	0	0
DCX	1641	broad.mit.edu	37	X	110653418	110653418	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chrX:110653418T>C	uc004epd.2	-	2	624	c.452A>G	c.(451-453)TAC>TGC	p.Y151C	DCX_uc011msv.1_Missense_Mutation_p.Y151C|DCX_uc004epe.2_Missense_Mutation_p.Y70C|DCX_uc004epf.2_Missense_Mutation_p.Y70C|DCX_uc004epg.2_Missense_Mutation_p.Y70C	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	151	Doublecortin 1.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GGACACAGCGTACACAATCCC	0.527													6	108	---	---	---	---	0	0	0.248553	0	0
SLC25A43	203427	broad.mit.edu	37	X	118585975	118585975	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chrX:118585975C>T	uc004erd.2	+	4	1038	c.694C>T	c.(694-696)CAG>TAG	p.Q232*	SLC25A43_uc004erc.1_RNA|SLC25A43_uc011mtt.1_Missense_Mutation_p.S174L	NM_145305	NP_660348	Q8WUT9	S2543_HUMAN	mitochondrial solute carrier protein	232	Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			skin(1)	1						CTGTCAGGCTCAGAGCCCCTA	0.532													8	69	---	---	---	---	0	0	0.307466	0	0
ODZ1	10178	broad.mit.edu	37	X	123637463	123637463	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chrX:123637463G>A	uc004euj.2	-	19	3456	c.3392C>T	c.(3391-3393)TCT>TTT	p.S1131F	ODZ1_uc011muj.1_Missense_Mutation_p.S1130F|ODZ1_uc010nqy.2_Missense_Mutation_p.S1131F	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1131	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TCCTAGGTTAGAAGCATCCAT	0.378													14	250	---	---	---	---	0	0	0.520397	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482113	152482113	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chrX:152482113C>T	uc004fhf.2	-	3	1118	c.898G>A	c.(898-900)GCA>ACA	p.A300T		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	300	MAGE.					cytoplasm|plasma membrane				central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTCAAAGCTGCTTCACGCAGG	0.577													47	99	---	---	---	---	0	0	0.870114	0	0
Unknown	0	broad.mit.edu	37	11	43283606	43283606	+	RNA	DEL	A	-	-			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr11:43283606delA	uc001mxe.1	-	2		c.1330delT								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		AAGCAAATGTAAAAAAAAAAA	0.388													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	19532388	19532389	+	IGR	INS	-	T	T	rs145833243	by1000genomes	TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr13:19532388_19532389insT								LOC284232 (86279 upstream) : LOC348021 (50010 downstream)																							TTTTGGGAGCCTTTTTTTTTTG	0.545													3	3	---	---	---	---					
ZNF787	126208	broad.mit.edu	37	19	56599438	56599440	+	Splice_Site	DEL	TCG	-	-	rs72029508		TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr19:56599438_56599440delTCG	uc010eth.1	-	3	1219	c.1100_splice	c.e3+1	p.E367_splice		NM_001002836	NP_001002836	Q6DD87	ZN787_HUMAN	zinc finger protein 787						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;3.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0559)		GCCCGCGGCCTCGTCGTCGTCGT	0.631													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	105473495	105473500	+	IGR	DEL	GCCGCC	-	-			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr2:105473495_105473500delGCCGCC								POU3F3 (25 upstream) : MRPS9 (180983 downstream)																							AGCGAAGAGGgccgccgccgccgccg	0.369													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	108519282	108519283	+	IGR	INS	-	A	A			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr2:108519282_108519283insA								RGPD4 (10283 upstream) : SLC5A7 (83712 downstream)																							ttctgtctcagaaaaaaaaaaa	0.188													2	4	---	---	---	---					
MIR567	693152	broad.mit.edu	37	3	111831724	111831724	+	RNA	DEL	A	-	-			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr3:111831724delA	hsa-mir-567|MI0003573	+			c.77delA			C3orf52_uc003dyq.3_Intron|C3orf52_uc011bhs.1_Intron|C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron																	0						ATGCAAAACTAAAAAAAAAAA	0.323													3	6	---	---	---	---					
MIR720	100302198	broad.mit.edu	37	3	164059106	164059106	+	5'Flank	DEL	T	-	-			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr3:164059106delT	hsa-mir-720|MI0006654	+																							0						ccggccgtccttccgggggag	0.000													2	4	---	---	---	---					
HTRA4	203100	broad.mit.edu	37	8	38831929	38831929	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ET-A3DO-01A-11D-A19J-08	TCGA-ET-A3DO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a073cf43-6d9e-47a0-b693-fa8263f43bd5	5b56007f-b1e0-4c6b-bd80-d3a292bbfcbc	g.chr8:38831929delC	uc003xmj.2	+	1	262	c.147delC	c.(145-147)TGCfs	p.C49fs		NM_153692	NP_710159	P83105	HTRA4_HUMAN	HtrA serine peptidase 4 precursor	49	IGFBP N-terminal.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_lung(54;0.0344)|Hepatocellular(245;0.0512)|Lung NSC(58;0.0955)	LUSC - Lung squamous cell carcinoma(45;1.5e-07)			CCACGCGCTGCCCCGCGCTGC	0.746													2	4	---	---	---	---					
