Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KLHDC7A	127707	broad.mit.edu	37	1	18807491	18807491	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr1:18807491G>A	uc001bax.2	+	1	68	c.16G>A	c.(16-18)GCA>ACA	p.A6T	KLHDC7A_uc009vpg.2_5'Flank	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	6						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCCCAGAGGAGCAGAGGCCCA	0.567000													17	60	---	---	---	---	0	0	0.639603	0	0
Unknown	0	broad.mit.edu	37	1	143403554	143403554	+	5'Flank	SNP	T	G	G			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr1:143403554T>G	uc001ejl.1	-						uc002zkn.1_RNA					DQ587539																		GGAACAGGATTTCTTTGGCCA	0.468000													4	15	---	---	---	---	0	0	0.278610	0	0
CCDC19	25790	broad.mit.edu	37	1	159863058	159863058	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr1:159863058G>A	uc001fui.2	-	2	59	c.41C>T	c.(40-42)GCC>GTC	p.A14V	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_5'UTR|CCDC19_uc001ful.2_5'UTR|CCDC19_uc009wtc.1_Missense_Mutation_p.A14V	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	14						mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			GTTGGAAGCGGCAGAAGAGGA	0.532000													4	163	---	---	---	---	0	0	0.184627	0	0
ASTN1	460	broad.mit.edu	37	1	176993813	176993813	+	Silent	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr1:176993813G>A	uc001glc.2	-	6	1388	c.1176C>T	c.(1174-1176)ACC>ACT	p.T392T	ASTN1_uc001glb.1_Silent_p.T392T|ASTN1_uc001gld.1_Silent_p.T392T|ASTN1_uc009wwx.1_Silent_p.T392T|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	392	Helical; (Potential).				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TCACACAGCTGGTGATGCTGA	0.517000													3	59	---	---	---	---	0	0	0.150653	0	0
CFH	3075	broad.mit.edu	37	1	196715005	196715005	+	Silent	SNP	C	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr1:196715005C>T	uc001gtj.3	+	21	3609	c.3369C>T	c.(3367-3369)TTC>TTT	p.F1123F		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1123	Sushi 19.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTACTTCATTCCCGTTGTCAG	0.403000													11	137	---	---	---	---	0	0	0.539581	0	0
RET	5979	broad.mit.edu	37	10	43606831	43606831	+	Silent	SNP	A	G	G			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr10:43606831A>G	uc001jal.2	+	7	1630	c.1440A>G	c.(1438-1440)GAA>GAG	p.E480E	RET_uc001jak.1_Silent_p.E480E|RET_uc010qez.1_Silent_p.E226E	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	480	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	AGTGTGCCGAACTTCACTACA	0.627000		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				26	61	---	---	---	---	0	0	0.693898	0	0
PGBD3	267004	broad.mit.edu	37	10	50723850	50723850	+	Silent	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr10:50723850G>A	uc001jht.2	-	2	1566	c.1311C>T	c.(1309-1311)TAC>TAT	p.Y437Y	ERCC6_uc001jhs.3_Intron|PGBD3_uc009xoe.2_Silent_p.Y905Y|PGBD3_uc001jhu.2_Silent_p.Y905Y	NM_170753	NP_736609	Q8N328	PGBD3_HUMAN	hypothetical protein LOC267004	437										pancreas(1)|breast(1)|skin(1)	3						GTTTCTGGGAGTAACGACTGA	0.438000													4	198	---	---	---	---	0	0	0.150653	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81058872	81058872	+	Missense_Mutation	SNP	C	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr10:81058872C>T	uc001kaf.2	+	16	2304	c.1732C>T	c.(1732-1734)CGC>TGC	p.R578C	ZMIZ1_uc001kag.2_Missense_Mutation_p.R454C	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	578					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			GGAGCCCTTCCGCCTGGAGCA	0.662000													4	68	---	---	---	---	0	0	0.278610	0	0
TACC2	10579	broad.mit.edu	37	10	123846133	123846133	+	Missense_Mutation	SNP	G	A	A	rs149524584	byFrequency	TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr10:123846133G>A	uc001lfv.2	+	4	4478	c.4118G>A	c.(4117-4119)AGC>AAC	p.S1373N	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.S1373N|TACC2_uc010qtv.1_Missense_Mutation_p.S1373N	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1373						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACAGAGGGCAGCATGGAGAGG	0.607000													3	78	---	---	---	---	0	0	0.115264	0	0
C2CD3	26005	broad.mit.edu	37	11	73759286	73759286	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr11:73759286G>A	uc001ouu.2	-	28	5686	c.5459C>T	c.(5458-5460)GCC>GTC	p.A1820V	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1820						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					CTTTGAGGAGGCATGAGCAAG	0.473000													6	20	---	---	---	---	0	0	0.217242	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74911324	74911324	+	Missense_Mutation	SNP	C	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr11:74911324C>A	uc001owb.2	+	11	2042	c.1655C>A	c.(1654-1656)TCC>TAC	p.S552Y	SLCO2B1_uc010rrq.1_Missense_Mutation_p.S297Y|SLCO2B1_uc010rrr.1_Missense_Mutation_p.S408Y|SLCO2B1_uc010rrs.1_Missense_Mutation_p.S436Y|SLCO2B1_uc001owc.2_Missense_Mutation_p.S325Y|SLCO2B1_uc001owd.2_Missense_Mutation_p.S530Y	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	552	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CTGGCAGGATCCTGCGACTCA	0.622000													12	218	---	---	---	---	5.50884e-06	6.08871e-06	0.411799	1	0
USP2	9099	broad.mit.edu	37	11	119244101	119244101	+	Silent	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr11:119244101G>A	uc001pwm.3	-	2	385	c.90C>T	c.(88-90)TAC>TAT	p.Y30Y	USP2_uc001pwn.3_Intron	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	30	Necessary for interaction with MDM4.				cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		AGGACGGGGTGTAGGCACCAT	0.602000													4	63	---	---	---	---	0	0	0.184627	0	0
VDR	7421	broad.mit.edu	37	12	48240527	48240527	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr12:48240527G>A	uc001rqm.2	-	9	1102	c.820C>T	c.(820-822)CGC>TGC	p.R274C	VDR_uc001rql.2_Missense_Mutation_p.R324C|VDR_uc001rqn.2_Missense_Mutation_p.R274C|VDR_uc010slq.1_Missense_Mutation_p.R242C	NM_001017535	NP_001017535	P11473	VDR_HUMAN	vitamin D (1,25-dihydroxyvitamin D3) receptor	274	Ligand-binding.|Vitamin D3 binding.		R -> L (in VDDR2A; decreases affinity for ligand by a factor of 1000).		decidualization|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D 24-hydroxylase activity|regulation of calcidiol 1-monooxygenase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid X receptor binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|vitamin D3 receptor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Acute lymphoblastic leukemia(13;0.109)|all_hematologic(14;0.214)		GBM - Glioblastoma multiforme(48;0.17)	Calcidiol(DB00146)|Calcipotriol(DB02300)|Calcitriol(DB00136)|Dihydrotachysterol(DB01070)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	TCATTGGAGCGCAACATGATG	0.542000													3	79	---	---	---	---	0	0	0.115264	0	0
C12orf10	60314	broad.mit.edu	37	12	53700517	53700517	+	Silent	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr12:53700517G>A	uc001scp.3	+	6	871	c.819G>A	c.(817-819)AAG>AAA	p.K273K	C12orf10_uc009zmx.2_Silent_p.K222K|C12orf10_uc001scq.3_Silent_p.K158K	NM_021640	NP_067653	Q86UA3	Q86UA3_HUMAN	MYG1 protein precursor	273										ovary(2)	2						GTCCCTGGAAGGAGCATCTCT	0.498000													3	145	---	---	---	---	0	0	0.115264	0	0
STAT2	6773	broad.mit.edu	37	12	56748323	56748323	+	Missense_Mutation	SNP	C	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr12:56748323C>T	uc001slc.2	-	8	787	c.709G>A	c.(709-711)GAG>AAG	p.E237K	STAT2_uc001sld.2_Missense_Mutation_p.E233K|STAT2_uc010sqn.1_Missense_Mutation_p.E233K	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	237					interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						GCCTTCCACTCCTCCAACTTT	0.542000													7	127	---	---	---	---	0	0	0.248553	0	0
LOC284232	284232	broad.mit.edu	37	13	19415849	19415849	+	RNA	SNP	T	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr13:19415849T>A	uc010tcj.1	-	1		c.30261A>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATTTCCTTCTTTGACCtttaa	0.249000													3	19	---	---	---	---	0	0	0.115264	0	0
SERPINE3	647174	broad.mit.edu	37	13	51915275	51915275	+	Silent	SNP	C	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr13:51915275C>T	uc001vfh.2	+	1	108	c.48C>T	c.(46-48)CTC>CTT	p.L16L	SERPINE3_uc010tgp.1_Silent_p.L16L	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	16					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						CTTGCTGCCTCCGAGCAAATG	0.542000													22	75	---	---	---	---	0	0	0.654019	0	0
SLC28A1	9154	broad.mit.edu	37	15	85461766	85461766	+	Silent	SNP	C	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr15:85461766C>T	uc002blg.2	+	10	1009	c.807C>T	c.(805-807)ATC>ATT	p.I269I	SLC28A1_uc010upd.1_Silent_p.I191I|SLC28A1_uc010bnb.2_Silent_p.I269I|SLC28A1_uc010upe.1_Silent_p.I269I|SLC28A1_uc010upf.1_Silent_p.I269I|SLC28A1_uc010upg.1_Silent_p.I269I	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	269	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TTCTGCCCATCATTGTCTTTT	0.597000													5	150	---	---	---	---	0	0	0.217242	0	0
CREB3L3	84699	broad.mit.edu	37	19	4171092	4171092	+	Missense_Mutation	SNP	C	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr19:4171092C>A	uc002lzl.2	+	8	1011	c.895C>A	c.(895-897)CTC>ATC	p.L299I	CREB3L3_uc002lzm.2_Missense_Mutation_p.L289I|CREB3L3_uc010xib.1_Missense_Mutation_p.L288I|CREB3L3_uc010xic.1_Missense_Mutation_p.P254H	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	299	Cytoplasmic (Potential).|Leucine-zipper.				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTAAGGTCCCTCTTGGAGCA	0.602000													3	73	---	---	---	---	0.004672	0.00478595	0.115264	1	0
VWA3B	200403	broad.mit.edu	37	2	98809456	98809456	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr2:98809456G>A	uc002syo.2	+	11	1826	c.1562G>A	c.(1561-1563)AGC>AAC	p.S521N	VWA3B_uc010yvh.1_Missense_Mutation_p.S371N|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.S40N|VWA3B_uc002sym.2_Missense_Mutation_p.S521N|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.S178N|VWA3B_uc002syp.1_5'UTR	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	521	VWFA.									ovary(3)|large_intestine(2)|skin(1)	6						TCAATGAAGAGCAAACTGGAC	0.423000													6	140	---	---	---	---	0	0	0.248553	0	0
POTEE	445582	broad.mit.edu	37	2	132021599	132021599	+	Silent	SNP	C	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr2:132021599C>T	uc002tsn.2	+	15	2623	c.2571C>T	c.(2569-2571)GAC>GAT	p.D857D	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.D457D|POTEE_uc002tsl.2_Silent_p.D439D|POTEE_uc010fmy.1_Silent_p.D321D	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	857	Actin-like.						ATP binding				0						ACTCTGGTGACGGGGTCACCC	0.617000													6	234	---	---	---	---	0	0	0.278610	0	0
HOXD12	3238	broad.mit.edu	37	2	176965332	176965332	+	Missense_Mutation	SNP	C	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr2:176965332C>A	uc010zev.1	+	2	657	c.657C>A	c.(655-657)AAC>AAA	p.N219K	HOXD12_uc010zew.1_Silent_p.R229R	NM_021193	NP_067016	P35452	HXD12_HUMAN	homeobox D12	219	Homeobox.					nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		AGTTGGAGAACGAATTCCTCG	0.567000													5	27	---	---	---	---	3.59834e-05	3.87513e-05	0.217242	1	0
TNS1	7145	broad.mit.edu	37	2	218683463	218683463	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr2:218683463G>A	uc002vgt.2	-	24	3678	c.3280C>T	c.(3280-3282)CCG>TCG	p.P1094S	TNS1_uc002vgr.2_Missense_Mutation_p.P1081S|TNS1_uc002vgs.2_Missense_Mutation_p.P1073S|TNS1_uc010zjv.1_Missense_Mutation_p.P1073S	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1094	Ser-rich.					cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		TCTCCCGACGGGAAACTCCCC	0.622000													3	59	---	---	---	---	0	0	0.150653	0	0
GLB1L	79411	broad.mit.edu	37	2	220108253	220108253	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr2:220108253G>A	uc002vkm.2	-	2	282	c.43C>T	c.(43-45)CCG>TCG	p.P15S	GLB1L_uc010zkx.1_Missense_Mutation_p.P15S|GLB1L_uc002vkn.2_Missense_Mutation_p.P15S|STK16_uc002vko.2_5'Flank|STK16_uc002vks.2_5'Flank|STK16_uc010zky.1_5'Flank|STK16_uc010fwf.2_5'Flank|STK16_uc002vkp.2_5'Flank|STK16_uc002vkr.2_5'Flank|STK16_uc002vkq.2_5'Flank	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	15					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGCTGAGCGGCAGCAGCAGG	0.612000													3	100	---	---	---	---	0	0	0.150653	0	0
DNTTIP1	116092	broad.mit.edu	37	20	44420653	44420653	+	Missense_Mutation	SNP	A	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr20:44420653A>T	uc002xpk.2	+	1	78	c.10A>T	c.(10-12)ACT>TCT	p.T4S	WFDC3_uc002xpf.1_5'Flank|WFDC3_uc002xpj.1_5'Flank|WFDC3_uc002xph.1_5'Flank|WFDC3_uc010ghh.1_5'Flank	NM_052951	NP_443183	Q9H147	TDIF1_HUMAN	terminal deoxynucleotidyltransferase interacting	4						nucleus				ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.0122)				CATGGGAGCCACTGGCGACGC	0.741000													5	3	---	---	---	---	0	0	0.184627	0	0
PMEPA1	56937	broad.mit.edu	37	20	56284608	56284608	+	Missense_Mutation	SNP	C	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr20:56284608C>T	uc002xyq.2	-	1	424	c.31G>A	c.(31-33)GCC>ACC	p.A11T	PMEPA1_uc002xyr.2_Intron|PMEPA1_uc002xys.2_Intron|PMEPA1_uc002xyt.2_Intron|uc002xyu.1_5'Flank	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	11	Extracellular (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						gcggcggcggcggTGCTGTTG	0.323000													2	1	---	---	---	---	0	0	0.115264	0	0
APOBEC3D	140564	broad.mit.edu	37	22	39427777	39427777	+	Missense_Mutation	SNP	A	G	G			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr22:39427777A>G	uc011aoe.1	+	6	895	c.841A>G	c.(841-843)AAC>GAC	p.N281D	APOBEC3D_uc011aof.1_Missense_Mutation_p.N97D|APOBEC3D_uc003awu.3_Missense_Mutation_p.N97D|APOBEC3D_uc003awt.3_Missense_Mutation_p.N281D|APOBEC3D_uc010gxu.2_Missense_Mutation_p.N77D	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	281					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					TCCTAACACAAACTACGAGGT	0.557000													5	134	---	---	---	---	0	0	0.307466	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				38	65	---	---	---	---	0	0	0.840704	0	0
PGM5	5239	broad.mit.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	G	G			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr9:70993145A>G	uc004agr.2	+	2	521	c.292A>G	c.(292-294)ATC>GTC	p.I98V		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	98					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						ACAGAATGGCATCTTGTCGAC	0.478000													3	55	---	---	---	---	0	0	0.115264	0	0
TDRD7	23424	broad.mit.edu	37	9	100227245	100227245	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr9:100227245G>A	uc004axj.2	+	8	1789	c.1564G>A	c.(1564-1566)GTA>ATA	p.V522I	TDRD7_uc011lux.1_Missense_Mutation_p.V448I	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	522	Tudor 1.				lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				GTTGCTGGCCGTAAATGCCGA	0.448000													3	64	---	---	---	---	0	0	0.115264	0	0
COL5A1	1289	broad.mit.edu	37	9	137716627	137716627	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr9:137716627G>A	uc004cfe.2	+	62	5262	c.4880G>A	c.(4879-4881)CGG>CAG	p.R1627Q	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1627	Fibrillar collagen NC1.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CAGATGAAACGGCCCCTGGGC	0.637000													4	52	---	---	---	---	0	0	0.184627	0	0
NHSL2	340527	broad.mit.edu	37	X	71360504	71360504	+	Missense_Mutation	SNP	A	C	C			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chrX:71360504A>C	uc011mqa.1	+	6	3106	c.3106A>C	c.(3106-3108)ATC>CTC	p.I1036L	NHSL2_uc004eak.1_Missense_Mutation_p.I670L|NHSL2_uc010nli.2_Missense_Mutation_p.I805L	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	1036											0	Renal(35;0.156)					TCTCAGCCCCATCATCACCCT	0.557000													8	75	---	---	---	---	0	0	0.307466	0	0
BTK	695	broad.mit.edu	37	X	100630267	100630267	+	Silent	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chrX:100630267G>A	uc004ehg.2	-	2	199	c.6C>T	c.(4-6)GCC>GCT	p.A2A	BTK_uc010nnn.2_Silent_p.A2A|BTK_uc010nno.2_Silent_p.A36A|BTK_uc004ehi.2_Silent_p.A2A	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	2					calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						GAATCACTGCGGCCATAGCTT	0.468000									Agammaglobulinemia_X-linked				9	111	---	---	---	---	0	0	0.361761	0	0
BCORL1	63035	broad.mit.edu	37	X	129148839	129148839	+	Silent	SNP	G	A	A			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chrX:129148839G>A	uc004evb.1	+	4	2205	c.2091G>A	c.(2089-2091)GGG>GGA	p.G697G	BCORL1_uc010nrd.1_Silent_p.G599G	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	697					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						TGAGGAATGGGGACCCGAGCA	0.607000													3	121	---	---	---	---	0	0	0.150653	0	0
RPTN	126638	broad.mit.edu	37	1	152128205	152128208	+	Frame_Shift_Del	DEL	TGTC	-	-			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr1:152128205_152128208delTGTC	uc001ezs.1	-	3	1432_1435	c.1367_1370delGACA	c.(1366-1371)AGACAAfs	p.R456fs		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	456_457	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACTCTGGCCTTGTCTGTCTGTCTG	0.520													7	1214	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	62702095	62702096	+	IGR	DEL	CT	-	-	rs113108474		TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr14:62702095_62702096delCT								FLJ43390 (104863 upstream) : KCNH5 (471851 downstream)																							CCTCCTTATCCTCCCCCCACCC	0.490													2	4	---	---	---	---					
SLC5A11	115584	broad.mit.edu	37	16	24921737	24921739	+	In_Frame_Del	DEL	CAG	-	-			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr16:24921737_24921739delCAG	uc002dmu.2	+	15	1993_1995	c.1761_1763delCAG	c.(1759-1764)GCCAGC>GCC	p.S592del	SLC5A11_uc002dms.2_In_Frame_Del_p.S528del|SLC5A11_uc010vcd.1_In_Frame_Del_p.S557del|SLC5A11_uc002dmt.2_In_Frame_Del_p.S436del|SLC5A11_uc010vce.1_In_Frame_Del_p.S522del|SLC5A11_uc010bxt.2_In_Frame_Del_p.S528del|SLC5A11_uc002dmv.2_In_Frame_Del_p.S215del	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	592	Cytoplasmic (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		TGCCAGAGGCCAGCAGCAGCAGC	0.542													9	87	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	25076743	25076743	+	5'Flank	DEL	G	-	-			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr16:25076743delG	uc002dnh.1	+											Homo sapiens cDNA FLJ36063 fis, clone TESTI2018975.																		GCAGGAGCGTGGGgggaagga	0.244													2	4	---	---	---	---					
ACD	65057	broad.mit.edu	37	16	67693646	67693648	+	In_Frame_Del	DEL	GCA	-	-			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr16:67693646_67693648delGCA	uc002etq.3	-	3	888_890	c.551_553delTGC	c.(550-555)CTGCAG>CAG	p.L184del	ACD_uc002etp.3_In_Frame_Del_p.L181del|ACD_uc002etr.3_In_Frame_Del_p.L181del|ACD_uc010vjt.1_In_Frame_Del_p.L174del|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	184					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CCGCAGTCCTGCAGCAGCAGCAG	0.650													7	279	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	6465041	6465042	+	IGR	INS	-	CTT	CTT	rs141944910	by1000genomes	TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr17:6465041_6465042insCTT								PITPNM3 (5164 upstream) : KIAA0753 (16604 downstream)																							cctcctcctcccttctgcctct	0.000													4	5	---	---	---	---					
KANK3	256949	broad.mit.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	-	-	rs111751275		TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr19:8398950_8398961delTCGCTGTCGCCA	uc010dwa.2	-	5	1533_1544	c.1467_1478delTGGCGACAGCGA	c.(1465-1479)GATGGCGACAGCGAG>GAG	p.DGDS489del	KANK3_uc002mjp.1_In_Frame_Del_p.MATA1del	NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47	489_492											0						GCCACCGTTCTCGCTGTCGCCATCGCTGTCGC	0.693													2	4	---	---	---	---					
SLC20A1	6574	broad.mit.edu	37	2	113416607	113416608	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr2:113416607_113416608delAG	uc002tib.2	+	7	1430_1431	c.984_985delAG	c.(982-987)CCAGAGfs	p.P328fs	SLC20A1_uc002tic.1_Frame_Shift_Del_p.P140fs	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	328_329	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						AGGAAGCTCCAGAGAGAGAGAG	0.515													8	101	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	129080306	129080307	+	IGR	INS	-	C	C	rs146039678	by1000genomes	TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr2:129080306_129080307insC								HS6ST1 (4135 upstream) : None (None downstream)																							GCCCTTGCCCGCCCCCCCCGCC	0.668													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	56636647	56636649	+	IGR	DEL	TTT	-	-	rs145866655		TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr7:56636647_56636649delTTT								DKFZp434L192 (71670 upstream) : ZNF479 (550679 downstream)																							AGATCCTCTAttttttttttttt	0.236													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	138270839	138270840	+	IGR	INS	-	TGAT	TGAT			TCGA-FK-A3SH-01A-11D-A22D-08	TCGA-FK-A3SH-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d7dcb3-395a-4247-8e8c-6867993079e0	3f74cc8e-932d-4dad-b056-bc700db6551e	g.chr7:138270839_138270840insTGAT								TRIM24 (509 upstream) : SVOPL (8191 downstream)																							TTTTATTCTTCTGATTGATTGA	0.312													3	5	---	---	---	---					
