Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZNF683	257101	broad.mit.edu	37	1	26691267	26691267	+	Missense_Mutation	SNP	G	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:26691267G>T	uc001bmg.1	-	4	888	c.770C>A	c.(769-771)CCA>CAA	p.P257Q	ZNF683_uc001bmh.1_Missense_Mutation_p.P257Q|ZNF683_uc009vsj.1_Missense_Mutation_p.P257Q	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	257					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		GAAGGCCCCTGGGTAGGGAAG	0.657000													8	252					5.4927e-09	5.99204e-09	0.047766	1	0
MACF1	23499	broad.mit.edu	37	1	39799793	39799793	+	Missense_Mutation	SNP	A	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:39799793A>G	uc010oiu.1	+	1	2984	c.2853A>G	c.(2851-2853)ATA>ATG	p.I951M	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	2516	Plectin 9.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTCACCATATATCTGGGATGA	0.418000													10	661					0	0	0.058154	0	0
LEPRE1	64175	broad.mit.edu	37	1	43213876	43213876	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:43213876G>A	uc001chv.2	-	12	1946	c.1833C>T	c.(1831-1833)GAC>GAT	p.D611D	LEPRE1_uc001chw.2_Silent_p.D611D|LEPRE1_uc001chx.3_Silent_p.D611D	NM_022356	NP_071751	Q32P28	P3H1_HUMAN	leprecan 1 isoform 1	611	Fe2OG dioxygenase.				negative regulation of cell proliferation	endoplasmic reticulum|proteinaceous extracellular matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			ovary(3)|lung(1)	4	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)			L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTCACCTGTAGTCGCGGAAGG	0.602000													5	136					0	0	0.184627	0	0
ZNF687	57592	broad.mit.edu	37	1	151261696	151261696	+	Missense_Mutation	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:151261696C>G	uc001exq.2	+	4	2518	c.2420C>G	c.(2419-2421)GCC>GGC	p.A807G	ZNF687_uc009wmo.2_Missense_Mutation_p.A807G|ZNF687_uc009wmp.2_Missense_Mutation_p.A807G	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	807	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GGGCCAAGTGCCCATGCCCAC	0.652000													4	245					0	0	0.184627	0	0
C1orf92	149499	broad.mit.edu	37	1	156897412	156897412	+	Missense_Mutation	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:156897412C>T	uc001fqm.2	+	7	959	c.787C>T	c.(787-789)CAC>TAC	p.H263Y	C1orf92_uc001fql.2_Missense_Mutation_p.H48Y	NM_144702	NP_653303	Q8N4P6	LRC71_HUMAN	hypothetical protein LOC149499	263	LRR 4.										0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGGTTTCAACCACATCGGTGA	0.682000											OREG0013892	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	68					0	0	0.115264	0	0
ATP1A2	477	broad.mit.edu	37	1	160091016	160091016	+	Missense_Mutation	SNP	G	A	A	rs144106169		TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:160091016G>A	uc001fvc.2	+	3	284	c.152G>A	c.(151-153)CGC>CAC	p.R51H	ATP1A2_uc001fvb.2_Missense_Mutation_p.R51H|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	51	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GAGCTGGGCCGCAAATACCAA	0.448000													7	632					0	0	0.038147	0	0
ANKRD45	339416	broad.mit.edu	37	1	173594044	173594044	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:173594044G>A	uc001gja.1	-	5	673	c.612C>T	c.(610-612)TGC>TGT	p.C204C		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	220											0						TTTTTGCACGGCATGCACTGA	0.363000													5	299					0	0	0.217242	0	0
F13B	2165	broad.mit.edu	37	1	197030949	197030949	+	Missense_Mutation	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:197030949C>G	uc001gtt.1	-	3	460	c.416G>C	c.(415-417)GGA>GCA	p.G139A		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	139	Sushi 2.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						AGAAGACCATCCATCAGAGAG	0.368000													5	230					0	0	0.029380	0	0
BPNT1	10380	broad.mit.edu	37	1	220240716	220240716	+	Silent	SNP	T	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:220240716T>C	uc001hma.2	-	6	574	c.402A>G	c.(400-402)ACA>ACG	p.T134T	BPNT1_uc010pug.1_Silent_p.T79T|BPNT1_uc010puh.1_Silent_p.T98T|BPNT1_uc001hmb.3_Silent_p.T134T	NM_006085	NP_006076	O95861	BPNT1_HUMAN	3'(2'), 5'-bisphosphate nucleotidase 1	134					3'-phosphoadenosine 5'-phosphosulfate metabolic process|nervous system development|xenobiotic metabolic process	cytosol	3'(2'),5'-bisphosphate nucleotidase activity			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0558)		CAATAAGAACTGTTACATTGT	0.308000													14	263					0	0	0.119110	0	0
FAM177B	400823	broad.mit.edu	37	1	222922880	222922880	+	Silent	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:222922880C>T	uc001hnt.2	+	5	581	c.315C>T	c.(313-315)AAC>AAT	p.N105N	uc001hnr.1_Intron|FAM177B_uc009xeb.2_RNA	NM_207468	NP_997351	A6PVY3	F177B_HUMAN	hypothetical protein LOC400823	105										ovary(1)	1						ATGTGTTAAACGAGTTCTATA	0.403000													5	217					0	0	0.184627	0	0
OR2M2	391194	broad.mit.edu	37	1	248343398	248343398	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:248343398G>A	uc010pzf.1	+	1	111	c.111G>A	c.(109-111)GTG>GTA	p.V37V		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCTTTTTAGTGGCCTTCATGG	0.517000													41	898					0	0	0.193644	0	0
ARMC4	55130	broad.mit.edu	37	10	28196686	28196686	+	Missense_Mutation	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr10:28196686C>G	uc009xky.2	-	17	2614	c.2516G>C	c.(2515-2517)GGA>GCA	p.G839A	ARMC4_uc010qds.1_Missense_Mutation_p.G364A|ARMC4_uc010qdt.1_Missense_Mutation_p.G531A|ARMC4_uc001itz.2_Missense_Mutation_p.G839A	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	839	ARM 6.						binding			ovary(4)|skin(2)	6						CAAACGAACTCCATCTAAGCG	0.408000													8	259					0	0	0.047766	0	0
LRIT2	340745	broad.mit.edu	37	10	85984173	85984173	+	Missense_Mutation	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr10:85984173C>T	uc001kcy.2	-	2	816	c.808G>A	c.(808-810)GTG>ATG	p.V270M	LRIT2_uc010qmc.1_Missense_Mutation_p.V270M	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	270	Ig-like.					integral to membrane				ovary(2)	2						CGCAGGGTCACATTCTGTCCT	0.527000													10	395					0	0	0.080935	0	0
FAM22D	728130	broad.mit.edu	37	10	89118098	89118098	+	Missense_Mutation	SNP	T	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr10:89118098T>C	uc001kes.2	+	1	622	c.76T>C	c.(76-78)TCT>CCT	p.S26P	FAM22D_uc009xte.1_Missense_Mutation_p.S26P	NM_001009610	NP_001009610	Q5VT03	FA22D_HUMAN	hypothetical protein LOC728130	26											0						GCCAGGTCACTCTCTGGGTCT	0.512000													11	894					0	0	0.093190	0	0
PIPSL	266971	broad.mit.edu	37	10	95720038	95720038	+	Missense_Mutation	SNP	G	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr10:95720038G>C	uc009xuj.2	-	1	1635	c.1116C>G	c.(1114-1116)GAC>GAG	p.D372E		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						CAGTGTCTCCGTCATGTATCA	0.458000													11	485					0	0	0.069234	0	0
FGFR2	2263	broad.mit.edu	37	10	123310879	123310879	+	Silent	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr10:123310879C>T	uc010qtk.1	-	5	1196	c.549G>A	c.(547-549)GGG>GGA	p.G183G	FGFR2_uc010qtg.1_Silent_p.G183G|FGFR2_uc010qth.1_Silent_p.G68G|FGFR2_uc010qti.1_Silent_p.G94G|FGFR2_uc010qtj.1_Silent_p.G183G|FGFR2_uc010qtl.1_Silent_p.G183G|FGFR2_uc010qtm.1_Silent_p.G68G|FGFR2_uc001lfl.3_Silent_p.G183G|FGFR2_uc001lfm.2_Silent_p.G94G|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Silent_p.G202G|FGFR2_uc010qto.1_Silent_p.G87G|FGFR2_uc001lfo.1_Silent_p.G202G|FGFR2_uc010qtp.1_Silent_p.G202G|FGFR2_uc010qtq.1_Silent_p.G202G	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	183	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GCATTGGGTTCCCCCCGGCTG	0.522000		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				9	380					0	0	0.069234	0	0
TACC2	10579	broad.mit.edu	37	10	124008253	124008253	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr10:124008253A>T	uc001lfv.2	+	20	8848	c.8488A>T	c.(8488-8490)AAG>TAG	p.K2830*	TACC2_uc001lfw.2_Nonsense_Mutation_p.K976*|TACC2_uc009xzx.2_Nonsense_Mutation_p.K2708*|TACC2_uc010qtv.1_Nonsense_Mutation_p.K2757*|TACC2_uc001lfx.2_Nonsense_Mutation_p.K457*|TACC2_uc001lfy.2_Nonsense_Mutation_p.K453*|TACC2_uc001lfz.2_Nonsense_Mutation_p.K908*|TACC2_uc001lga.2_Nonsense_Mutation_p.K878*|TACC2_uc009xzy.2_Nonsense_Mutation_p.K890*|TACC2_uc001lgb.2_Nonsense_Mutation_p.K788*	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2830	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CTCCGTGGAGAAGTCTCTGGC	0.582000													7	525					0	0	0.038147	0	0
ANKRD42	338699	broad.mit.edu	37	11	82922388	82922388	+	Missense_Mutation	SNP	T	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr11:82922388T>A	uc001ozz.1	+	5	840	c.418T>A	c.(418-420)TTT>ATT	p.F140I	ANKRD42_uc009yvi.1_Missense_Mutation_p.F168I|ANKRD42_uc010rsv.1_Missense_Mutation_p.F168I|ANKRD42_uc001paa.2_Missense_Mutation_p.F168I|ANKRD42_uc001pab.1_Missense_Mutation_p.F167I	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	140	ANK 4.									skin(1)	1						TTATGCAGCTTTTCATGGGCG	0.433000													10	444					0	0	0.058154	0	0
OR8B12	219858	broad.mit.edu	37	11	124413031	124413031	+	Missense_Mutation	SNP	T	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr11:124413031T>A	uc010sam.1	-	1	520	c.520A>T	c.(520-522)AAT>TAT	p.N174Y		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		ATGAAATGATTGACAAGGTTG	0.498000													15	419					0	0	0.189662	0	0
LOC642846	642846	broad.mit.edu	37	12	9463867	9463867	+	RNA	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr12:9463867G>A	uc010sgp.1	+	21		c.2496G>A			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						CTGCTGGGCCGTCTGGCTGCC	0.622000													6	41					0	0	0.038147	0	0
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	G	G	rs121913530		TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr12:25398285C>G	uc001rgp.1	-	2	215	c.34G>C	c.(34-36)GGT>CGT	p.G12R	KRAS_uc001rgq.1_Missense_Mutation_p.G12R|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12G(6)|p.G12N(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CCTACGCCACCAGCTCCAACT	0.348000	G12C(UMUC3_URINARY_TRACT)|G12R(CAL62_THYROID)|G12C(CALU1_LUNG)|G12C(NCIH2030_LUNG)|G12C(LU99_LUNG)|G12C(NCIH1792_LUNG)|G12R(KP2_PANCREAS)|G12C(KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(NCIH2122_LUNG)|G12C(NCIH358_LUNG)|G12R(PSN1_PANCREAS)|G12C(KYSE410_OESOPHAGUS)|G12S(A549_LUNG)|G12R(HUPT3_PANCREAS)|G12R(TCCPAN2_PANCREAS)|G12C(HCC44_LUNG)|G12S(KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(SW1463_LARGE_INTESTINE)|G12C(NCIH23_LUNG)|G12C(LU65_LUNG)|G12C(NCIH1373_LUNG)|G12C(MIAPACA2_PANCREAS)|G12R(HS274T_BREAST)|G12S(LS123_LARGE_INTESTINE)|G12C(SW1573_LUNG)|G12C(SW837_LARGE_INTESTINE)|G12C(OV56_OVARY)|G12C(IALM_LUNG)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			5	97					0	0	0.038147	0	0
TUBA1A	7846	broad.mit.edu	37	12	49580453	49580453	+	Missense_Mutation	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr12:49580453G>A	uc009zlf.2	-	2	439	c.167C>T	c.(166-168)ACG>ATG	p.T56M	TUBA1B_uc001rto.2_Missense_Mutation_p.T21M|TUBA1A_uc001rtp.2_Missense_Mutation_p.T56M|TUBA1A_uc001rtq.2_Translation_Start_Site|TUBA1A_uc001rtr.2_Translation_Start_Site|TUBA1A_uc009zlg.2_Intron	NM_006009	NP_006000	Q71U36	TBA1A_HUMAN	tubulin, alpha 1a	56					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|structural molecule activity				0						GCCAGCCCCCGTCTCACTGAA	0.557000													20	623					0	0	0.204396	0	0
DIP2B	57609	broad.mit.edu	37	12	51133198	51133198	+	Missense_Mutation	SNP	G	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr12:51133198G>T	uc001rwv.2	+	36	4339	c.4183G>T	c.(4183-4185)GTG>TTG	p.V1395L	DIP2B_uc009zlt.2_Missense_Mutation_p.V825L	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	1395						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						GTAGATTTGGGTGAACAGTCC	0.418000													12	307					6.53275e-17	7.34935e-17	0.119110	1	0
TRHDE	29953	broad.mit.edu	37	12	72680618	72680619	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr12:72680618_72680619GA>AT	uc001sxa.2	+	2	967_968	c.937_938GA>AT	c.(937-939)GAA>ATA	p.E313I		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	313	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						CGTGTTTGAGGAAGATGGATGG	0.411000													10	540					0	0	0.115264	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85518293	85518293	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr12:85518293A>T	uc001tac.2	+	17	4114	c.4003A>T	c.(4003-4005)AAA>TAA	p.K1335*	LRRIQ1_uc001tab.1_Nonsense_Mutation_p.K1335*	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1335	IQ 2.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GCCTAGTGAAAAAATGTAAGA	0.323000													24	595					0	0	0.134883	0	0
ATP2B1	490	broad.mit.edu	37	12	90004974	90004974	+	Missense_Mutation	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr12:90004974C>G	uc001tbh.2	-	12	2424	c.2243G>C	c.(2242-2244)GGA>GCA	p.G748A	ATP2B1_uc001tbg.2_Missense_Mutation_p.G748A|ATP2B1_uc001tbf.2_Missense_Mutation_p.G418A	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	748	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						CTTTACCTCTCCTTTTTCATT	0.328000													7	454					0	0	0.029380	0	0
MYCBP2	23077	broad.mit.edu	37	13	77655741	77655741	+	Missense_Mutation	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr13:77655741C>G	uc001vkf.2	-	66	11216	c.11125G>C	c.(11125-11127)GAC>CAC	p.D3709H	MYCBP2_uc010aev.2_Missense_Mutation_p.D3113H|MYCBP2_uc001vke.2_Missense_Mutation_p.D329H	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3709	DOC.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GTTTTTATGTCAACAATGCTG	0.358000													6	270					0	0	0.217242	0	0
COL4A1	1282	broad.mit.edu	37	13	110845204	110845204	+	Missense_Mutation	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr13:110845204C>T	uc001vqw.3	-	23	1560	c.1438G>A	c.(1438-1440)GGG>AGG	p.G480R	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	480	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCCTGTGGCCCGGGAGGCCCC	0.488000													12	342					0	0	0.080935	0	0
OR4K5	79317	broad.mit.edu	37	14	20388940	20388940	+	Missense_Mutation	SNP	A	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr14:20388940A>T	uc010tkw.1	+	1	175	c.175A>T	c.(175-177)ATG>TTG	p.M59L		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCACTCCCCTATGTACTTTCT	0.408000													9	922					0	0	0.080935	0	0
CCNB1IP1	57820	broad.mit.edu	37	14	20781808	20781808	+	Silent	SNP	T	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr14:20781808T>A	uc001vwv.2	-	6	1099	c.450A>T	c.(448-450)CTA>CTT	p.L150L	CCNB1IP1_uc001vww.2_Silent_p.L150L|CCNB1IP1_uc001vwx.2_Silent_p.L150L|CCNB1IP1_uc001vwy.2_Silent_p.L150L|CCNB1IP1_uc001vwz.2_Silent_p.L150L	NM_182851	NP_878271	Q9NPC3	CIP1_HUMAN	cyclin B1 interacting protein 1 isoform 3	150	Potential.					chromosome|nucleus	ligase activity|metal ion binding|protein binding		HMGA2/CCNB1IP1(2)	soft_tissue(2)|ovary(1)	3	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;8.86e-07)|all cancers(55;4.98e-06)	GBM - Glioblastoma multiforme(265;0.0164)		TGTATTCTTCTAGTACTTTCT	0.398000			T	HMGA2	leiomyoma								6	328					0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	14	22180933	22180933	+	RNA	SNP	A	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr14:22180933A>G	uc010tme.1	+	3		c.252A>G			uc001wbm.2_Missense_Mutation_p.R69G					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		ATGTGCACCAAGACTCCTTGT	0.507000													15	849					0	0	0.069288	0	0
NEK9	91754	broad.mit.edu	37	14	75573221	75573221	+	Missense_Mutation	SNP	C	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr14:75573221C>A	uc001xrl.2	-	12	1666	c.1512G>T	c.(1510-1512)TGG>TGT	p.W504C	NEK9_uc001xrk.2_5'UTR	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	504	RCC1 3.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		CGCCACAGCCCCAAGAATAGA	0.478000													25	764					1.17739e-12	1.31091e-12	0.108266	1	0
TGM7	116179	broad.mit.edu	37	15	43579857	43579857	+	Missense_Mutation	SNP	T	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr15:43579857T>A	uc001zrf.1	-	5	574	c.569A>T	c.(568-570)GAC>GTC	p.D190V		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	190					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	GTCTATGATGTCCTCTTCAAA	0.433000													8	304					0	0	0.047766	0	0
IGDCC4	57722	broad.mit.edu	37	15	65678310	65678310	+	Silent	SNP	T	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr15:65678310T>G	uc002aou.1	-	18	3249	c.3039A>C	c.(3037-3039)CCA>CCC	p.P1013P	IGDCC4_uc002aot.1_Silent_p.P601P	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1013	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						CATGGGCAGCTGGGGGGCTGG	0.667000											OREG0023195	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	61					0	0	0.108266	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85056021	85056021	+	RNA	SNP	T	C	C	rs1062001		TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr15:85056021T>C	uc002bkm.2	-	6		c.539A>G				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						GTAGCTGCTCTACCTTAGATG	0.502000													8	74					0	0	0.058154	0	0
IFT140	9742	broad.mit.edu	37	16	1614049	1614049	+	Silent	SNP	G	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr16:1614049G>T	uc002cmb.2	-	17	2378	c.2016C>A	c.(2014-2016)TCC>TCA	p.S672S	IFT140_uc002clz.2_Silent_p.S323S	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	672										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				ACTGAGGCTGGGAGCGCGGCG	0.577000													11	391					5.16669e-11	5.6939e-11	0.080935	1	0
CREBBP	1387	broad.mit.edu	37	16	3828793	3828793	+	Missense_Mutation	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr16:3828793C>T	uc002cvv.2	-	9	2053	c.1849G>A	c.(1849-1851)GAT>AAT	p.D617N	CREBBP_uc002cvw.2_Missense_Mutation_p.D579N	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	617	KIX.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GCTGCGGGATCAGGTGTTGGG	0.438000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				18	521					0	0	0.175082	0	0
ZNF423	23090	broad.mit.edu	37	16	49823459	49823459	+	Splice_Site	SNP	T	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr16:49823459T>C	uc002efs.2	-	3	315	c.17_splice	c.e3-1	p.V6_splice		NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423						cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CCTCTTCAACTGAAAGAGAGA	0.552000													4	127					0	0	0.184627	0	0
CHD3	1107	broad.mit.edu	37	17	7796819	7796819	+	Missense_Mutation	SNP	T	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr17:7796819T>C	uc002gje.2	+	5	875	c.725T>C	c.(724-726)CTT>CCT	p.L242P	CHD3_uc002gjd.2_Missense_Mutation_p.L301P|CHD3_uc002gjf.2_Missense_Mutation_p.L242P|CHD3_uc002gjg.1_Missense_Mutation_p.L74P	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	242					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CCCCCCGCCCTTCCACCACCC	0.507000													5	125					0	0	0.125774	0	0
SUPT6H	6830	broad.mit.edu	37	17	27009796	27009796	+	Missense_Mutation	SNP	T	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr17:27009796T>C	uc002hby.2	+	14	1739	c.1649T>C	c.(1648-1650)CTG>CCG	p.L550P	SUPT6H_uc010crt.2_Missense_Mutation_p.L550P	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	550					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					GGGGAGAACCTGCGGGATAGC	0.552000													10	374					0	0	0.080935	0	0
EVI2B	2124	broad.mit.edu	37	17	29631537	29631537	+	Missense_Mutation	SNP	G	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr17:29631537G>C	uc002hgk.2	-	2	1246	c.1091C>G	c.(1090-1092)TCT>TGT	p.S364C	NF1_uc002hgg.2_Intron|NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron|NF1_uc010cso.2_Intron|EVI2B_uc010csq.2_Missense_Mutation_p.S379C	NM_006495	NP_006486	P34910	EVI2B_HUMAN	ecotropic viral integration site 2B precursor	364	Cytoplasmic (Potential).					cytoplasm|integral to plasma membrane				ovary(2)	2		all_cancers(10;6.97e-11)|all_epithelial(10;0.0051)|all_hematologic(16;0.0149)|Breast(31;0.0155)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|all_lung(9;0.0468)|Lung NSC(157;0.094)		UCEC - Uterine corpus endometrioid carcinoma (4;6.64e-05)|all cancers(4;6.88e-13)|Epithelial(4;8.95e-12)|OV - Ovarian serous cystadenocarcinoma(4;1.01e-11)|GBM - Glioblastoma multiforme(4;0.184)		TGGAAGAGGAGATACAATTGT	0.433000													17	285					0	0	0.160694	0	0
KRT25	147183	broad.mit.edu	37	17	38905527	38905527	+	Missense_Mutation	SNP	A	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr17:38905527A>C	uc002hve.2	-	7	1287	c.1226T>G	c.(1225-1227)GTG>GGG	p.V409G		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	409	Tail.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TTGACTTCCCACATTTCCAGA	0.294000													20	520					0	0	0.069288	0	0
KRT31	3881	broad.mit.edu	37	17	39551544	39551544	+	Missense_Mutation	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr17:39551544G>A	uc002hwn.2	-	5	882	c.829C>T	c.(829-831)CGC>TGC	p.R277C	KRT31_uc010cxn.2_Missense_Mutation_p.R277C	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	277	Coil 2.|Rod.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				TTGACTGTGCGTCTCAGCTCG	0.582000													10	412					0	0	0.058154	0	0
FMNL1	752	broad.mit.edu	37	17	43322219	43322219	+	Missense_Mutation	SNP	A	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr17:43322219A>G	uc002iin.2	+	20	2751	c.2551A>G	c.(2551-2553)AGC>GGC	p.S851G	FMNL1_uc002iiq.2_Missense_Mutation_p.S429G|FMNL1_uc010dag.2_RNA	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	851	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						CATGAACAGTAGCAAGCGTGG	0.612000													5	442					0	0	0.217242	0	0
TNRC6C	57690	broad.mit.edu	37	17	76046056	76046056	+	Missense_Mutation	SNP	G	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr17:76046056G>C	uc002jud.2	+	4	1513	c.913G>C	c.(913-915)GGT>CGT	p.G305R	TNRC6C_uc002juf.2_Missense_Mutation_p.G305R|TNRC6C_uc002jue.2_Missense_Mutation_p.G305R	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	305	Sufficient for interaction with argonaute family proteins.|Gly-rich.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			ACCTCCTGCTGGTCCTGGAAT	0.532000													7	196					0	0	0.029380	0	0
ELP2	55250	broad.mit.edu	37	18	33744476	33744476	+	Missense_Mutation	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr18:33744476C>G	uc002kzk.1	+	18	1810	c.1800C>G	c.(1798-1800)AAC>AAG	p.N600K	ELP2_uc010xcg.1_Missense_Mutation_p.N665K|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Missense_Mutation_p.N574K|ELP2_uc010xch.1_Missense_Mutation_p.N595K|ELP2_uc002kzn.1_Missense_Mutation_p.N530K|ELP2_uc002kzo.1_Missense_Mutation_p.N530K	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	600	WD 10.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						TTCTTTGGAACACTACATCTT	0.383000													13	495					0	0	0.132662	0	0
SMAD4	4089	broad.mit.edu	37	18	48573663	48573663	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr18:48573663C>T	uc010xdp.1	+	2	785	c.247C>T	c.(247-249)CAG>TAG	p.Q83*	SMAD4_uc010xdo.1_RNA	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	83	MH1.				BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(5)|p.Q83*(1)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		TGGGAGGCTTCAGGTTAGTCT	0.353000									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				10	600					0	0	0.069234	0	0
MAG	4099	broad.mit.edu	37	19	35786697	35786697	+	Silent	SNP	G	A	A	rs142334011	byFrequency	TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr19:35786697G>A	uc002nyy.1	+	4	377	c.228G>A	c.(226-228)TCG>TCA	p.S76S	MAG_uc002nyx.1_Silent_p.S76S|MAG_uc010eds.1_Silent_p.S51S|MAG_uc002nyz.1_Silent_p.S76S	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	76	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TCTTCAAGTCGCGCACCCAAG	0.642000													9	642					0	0	0.058154	0	0
LGALS4	3960	broad.mit.edu	37	19	39292512	39292512	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr19:39292512G>A	uc002ojg.2	-	10	1078	c.864C>T	c.(862-864)TAC>TAT	p.Y288Y		NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	288	Galectin 2.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			GGCCATTGGCGTAAACCTTGA	0.582000													6	354					0	0	0.217242	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39914970	39914970	+	Missense_Mutation	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr19:39914970G>A	uc010xuz.1	+	19	3522	c.3197G>A	c.(3196-3198)GGC>GAC	p.G1066D	PLEKHG2_uc010xuy.1_Missense_Mutation_p.G1007D|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.G844D	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	1066					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GATGTTCAGGGCCCAGACCCT	0.587000													10	503					0	0	0.058154	0	0
APOE	348	broad.mit.edu	37	19	45412450	45412450	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr19:45412450G>A	uc002pab.2	+	4	980	c.897G>A	c.(895-897)GAG>GAA	p.E299E		NM_000041	NP_000032	P02649	APOE_HUMAN	apolipoprotein E precursor	299					anti-apoptosis|Cdc42 protein signal transduction|cell death|cGMP-mediated signaling|cholesterol efflux|cholesterol homeostasis|chylomicron remnant clearance|cytoskeleton organization|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|induction of apoptosis|intracellular transport|negative regulation of blood vessel endothelial cell migration|negative regulation of cholesterol biosynthetic process|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of platelet activation|nitric oxide mediated signal transduction|phospholipid efflux|positive regulation of cGMP biosynthetic process|positive regulation of cholesterol efflux|positive regulation of cholesterol esterification|positive regulation of low-density lipoprotein particle receptor catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of nitric-oxide synthase activity|receptor-mediated endocytosis|regulation of axon extension|regulation of neuronal synaptic plasticity|response to reactive oxygen species|reverse cholesterol transport|synaptic transmission, cholinergic|triglyceride metabolic process|very-low-density lipoprotein particle clearance|very-low-density lipoprotein particle remodeling	chylomicron|dendrite|high-density lipoprotein particle|intermediate-density lipoprotein particle|low-density lipoprotein particle|neuronal cell body|very-low-density lipoprotein particle	antioxidant activity|beta-amyloid binding|heparin binding|low-density lipoprotein particle receptor binding|metal chelating activity|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding|protein heterodimerization activity|protein homodimerization activity|tau protein binding|very-low-density lipoprotein particle receptor binding				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|Epithelial(262;0.174)	Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	GGCTGGTGGAGAAGGTGCAGG	0.697000													3	80					0	0	0.184627	0	0
PRR12	57479	broad.mit.edu	37	19	50098406	50098406	+	Missense_Mutation	SNP	G	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr19:50098406G>T	uc002poo.3	+	4	814	c.814G>T	c.(814-816)GCC>TCC	p.A272S		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CTCGGGTGCTGCCCCGGGCCC	0.701000													6	93					8.12818e-05	8.69152e-05	0.029380	1	0
ZNF132	7691	broad.mit.edu	37	19	58946041	58946041	+	Missense_Mutation	SNP	G	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr19:58946041G>C	uc002qst.3	-	3	1171	c.770C>G	c.(769-771)ACT>AGT	p.T257S		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	257	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		TTCAGAGTGAGTTCTCAGATG	0.458000													14	558					0	0	0.132662	0	0
STAMBP	10617	broad.mit.edu	37	2	74072338	74072338	+	Silent	SNP	A	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr2:74072338A>C	uc002sjs.2	+	4	374	c.324A>C	c.(322-324)GCA>GCC	p.A108A	STAMBP_uc002sjt.2_Silent_p.A108A|STAMBP_uc002sju.2_Silent_p.A108A|STAMBP_uc002sjv.2_Silent_p.A108A	NM_201647	NP_964010	O95630	STABP_HUMAN	STAM binding protein	108	Glu-rich.|Interaction with CHMP3.				JAK-STAT cascade|positive regulation of cell proliferation	early endosome|membrane|nucleus	metal ion binding|metallopeptidase activity|protein binding			ovary(1)|lung(1)|breast(1)|pancreas(1)	4						AGCTGAAGGCAGAGCTGTTAA	0.318000													6	313					0	0	0.029380	0	0
RGPD4	285190	broad.mit.edu	37	2	108496435	108496435	+	Missense_Mutation	SNP	T	A	A	rs832352		TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr2:108496435T>A	uc010ywk.1	+	21	5018	c.4936T>A	c.(4936-4938)TGG>AGG	p.W1646R	RGPD4_uc002tdu.2_Missense_Mutation_p.W833R|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1646					intracellular transport		binding			skin(2)	2						GCCTCCATTATGGCATGCTGA	0.358000													7	427					0	0	0.029380	0	0
XIRP2	129446	broad.mit.edu	37	2	168103442	168103442	+	Missense_Mutation	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr2:168103442C>T	uc002udx.2	+	8	5558	c.5540C>T	c.(5539-5541)TCC>TTC	p.S1847F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S1672F|XIRP2_uc010fpq.2_Missense_Mutation_p.S1625F|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1672					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ACCCTAAATTCCCTCAGCCAG	0.373000													5	290					0	0	0.184627	0	0
PLCL1	5334	broad.mit.edu	37	2	198950447	198950447	+	Missense_Mutation	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr2:198950447C>G	uc010fsp.2	+	2	2497	c.2206C>G	c.(2206-2208)CCC>GCC	p.P736A	PLCL1_uc002uuv.3_Missense_Mutation_p.P657A	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	736	C2.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	TTTCCCAAAGCCCAAGGGAGC	0.438000													10	330					0	0	0.069234	0	0
VWC2L	402117	broad.mit.edu	37	2	215440489	215440489	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr2:215440489G>A	uc002vet.2	+	4	744	c.614G>A	c.(613-615)TGG>TAG	p.W205*	VWC2L_uc010zjl.1_3'UTR	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	205						extracellular region					0						AACGGGGACTGGTGGAAGCCT	0.473000													19	698					0	0	0.189662	0	0
HCK	3055	broad.mit.edu	37	20	30671802	30671802	+	Missense_Mutation	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr20:30671802G>A	uc002wxh.2	+	7	809	c.638G>A	c.(637-639)CGA>CAA	p.R213Q	HCK_uc010gdy.2_Missense_Mutation_p.R192Q|HCK_uc002wxi.2_Missense_Mutation_p.R191Q	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	213	SH2.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ATATCCCCCCGAAGCACCTTC	0.582000													7	196					0	0	0.029380	0	0
SLA2	84174	broad.mit.edu	37	20	35262940	35262940	+	Silent	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr20:35262940C>T	uc002xfv.2	-	3	506	c.144G>A	c.(142-144)CCG>CCA	p.P48P	SLA2_uc002xfu.2_Silent_p.P48P	NM_032214	NP_115590	Q9H6Q3	SLAP2_HUMAN	Src-like-adaptor 2 isoform a	48	SH3.				antigen receptor-mediated signaling pathway|B cell mediated immunity|intracellular receptor mediated signaling pathway|negative regulation of B cell activation|negative regulation of calcium-mediated signaling|negative regulation of transcription from RNA polymerase II promoter|T cell activation	cytoplasmic membrane-bounded vesicle|endosome membrane|plasma membrane	protein N-terminus binding|SH3/SH2 adaptor activity				0	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				ACAGCTCGGCCGGGCCACCTG	0.537000													8	189					0	0	0.047766	0	0
C20orf177	63939	broad.mit.edu	37	20	58519380	58519380	+	Missense_Mutation	SNP	G	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr20:58519380G>T	uc002yba.2	+	5	797	c.382G>T	c.(382-384)GAT>TAT	p.D128Y	C20orf177_uc010zzx.1_Intron|C20orf177_uc002ybc.2_Missense_Mutation_p.D128Y	NM_022106	NP_071389	Q9NTX9	CT177_HUMAN	hypothetical protein LOC63939	128										ovary(2)|breast(1)	3	all_lung(29;0.00693)		BRCA - Breast invasive adenocarcinoma(7;1.22e-08)			AGTTTACTTTGATCTTCACCC	0.458000													5	298					0.00116845	0.00120183	0.217242	1	0
COL6A1	1291	broad.mit.edu	37	21	47423909	47423909	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr21:47423909G>A	uc002zhu.1	+	35	3171	c.3069G>A	c.(3067-3069)AGG>AGA	p.R1023R	COL6A1_uc010gqd.1_Silent_p.R354R|COL6A1_uc002zhv.1_Silent_p.R354R|COL6A1_uc002zhw.1_Silent_p.R117R	NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	1023	C-terminal globular domain.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	CAGTCTCCAGGAAGGTGGCGC	0.622000													8	370					0	0	0.069234	0	0
COL6A2	1292	broad.mit.edu	37	21	47532443	47532443	+	Silent	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr21:47532443C>T	uc002zia.1	+	3	748	c.666C>T	c.(664-666)GAC>GAT	p.D222D	COL6A2_uc002zhy.1_Silent_p.D222D|COL6A2_uc002zhz.1_Silent_p.D222D|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	222	VWFA 1.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		TGCTGCCCGACTCCACCGAGA	0.682000													6	98					0	0	0.217242	0	0
MUC4	4585	broad.mit.edu	37	3	195517521	195517521	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr3:195517521G>A	uc011bto.1	-	2	1390	c.930C>T	c.(928-930)TTC>TTT	p.F310F	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Silent_p.F192F	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	315					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AAGTCCTTGAGAAAGTTGCTG	0.473000													8	578					0	0	0.058154	0	0
HTT	3064	broad.mit.edu	37	4	3180112	3180112	+	Silent	SNP	T	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr4:3180112T>A	uc011bvq.1	+	36	4702	c.4557T>A	c.(4555-4557)ATT>ATA	p.I1519I		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1517					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TCATTGGAATTCCTAAAATCA	0.408000													6	481					0	0	0.217242	0	0
RBPJ	3516	broad.mit.edu	37	4	26432541	26432541	+	Missense_Mutation	SNP	A	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr4:26432541A>T	uc003grx.1	+	12	1651	c.1415A>T	c.(1414-1416)GAA>GTA	p.E472V	RBPJ_uc003gry.1_Missense_Mutation_p.E457V|RBPJ_uc003grz.1_Missense_Mutation_p.E472V|RBPJ_uc003gsa.1_Missense_Mutation_p.E458V|RBPJ_uc003gsb.1_Missense_Mutation_p.E459V|RBPJ_uc003gsc.1_3'UTR|uc003gsd.2_5'Flank	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	472					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				CCCCCTAACGAATCAAACACA	0.507000													6	270					0	0	0.217242	0	0
NFXL1	152518	broad.mit.edu	37	4	47880645	47880645	+	Missense_Mutation	SNP	G	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr4:47880645G>C	uc010igh.2	-	17	2153	c.1976C>G	c.(1975-1977)TCT>TGT	p.S659C	NFXL1_uc003gxo.2_5'UTR|NFXL1_uc003gxp.2_Missense_Mutation_p.S659C|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.S659C	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	659						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TCTTTTACAAGAGTAGGGTCC	0.388000													17	424					0	0	0.160694	0	0
OSTC	58505	broad.mit.edu	37	4	109571817	109571817	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr4:109571817G>A	uc003hzb.1	+	1	77	c.6G>A	c.(4-6)GAG>GAA	p.E2E		NM_021227	NP_067050	Q9NRP0	OSTC_HUMAN	DC2 protein	2	Cytoplasmic (Potential).					integral to membrane|oligosaccharyltransferase complex				breast(1)	1						CCAACATGGAGACTTTGTACC	0.612000													10	362					0	0	0.058154	0	0
FSTL5	56884	broad.mit.edu	37	4	162697123	162697123	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr4:162697123G>A	uc003iqh.2	-	5	949	c.513C>T	c.(511-513)GAC>GAT	p.D171D	FSTL5_uc003iqi.2_Silent_p.D170D|FSTL5_uc010iqv.2_Silent_p.D170D	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	171						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		GAGATATGTCGTCGCCATTAG	0.303000													15	264					0	0	0.119110	0	0
FAM105A	54491	broad.mit.edu	37	5	14601507	14601507	+	Missense_Mutation	SNP	A	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:14601507A>G	uc003jfj.2	+	4	417	c.304A>G	c.(304-306)AGA>GGA	p.R102G		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	102										ovary(1)	1	Lung NSC(4;0.00592)					TTATTGTGCAAGAGAATGGAA	0.418000													12	288					0	0	0.105934	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79741136	79741136	+	Missense_Mutation	SNP	A	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:79741136A>T	uc003kgr.3	+	7	2938	c.2636A>T	c.(2635-2637)AAT>ATT	p.N879I	ZFYVE16_uc003kgp.2_Missense_Mutation_p.N879I|ZFYVE16_uc003kgq.3_Missense_Mutation_p.N879I|ZFYVE16_uc003kgs.3_Missense_Mutation_p.N879I|ZFYVE16_uc003kgt.3_Missense_Mutation_p.M53L	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	879					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		ATATTGCCCAATGGTGAAGTT	0.363000													5	322					0	0	0.029380	0	0
PAM	5066	broad.mit.edu	37	5	102237087	102237087	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:102237087C>T	uc003knw.2	+	3	611	c.238C>T	c.(238-240)CGA>TGA	p.R80*	PAM_uc003kns.2_Nonsense_Mutation_p.R80*|PAM_uc003knt.2_Nonsense_Mutation_p.R80*|PAM_uc003knu.2_Nonsense_Mutation_p.R80*|PAM_uc003knv.2_Nonsense_Mutation_p.R80*|PAM_uc011cuz.1_Intron	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	80	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	CATGTCTATGCGAATACCAGT	0.348000													8	149					0	0	0.047766	0	0
AFF4	27125	broad.mit.edu	37	5	132219054	132219054	+	Silent	SNP	T	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:132219054T>C	uc003kyd.2	-	20	3750	c.3342A>G	c.(3340-3342)GAA>GAG	p.E1114E	AFF4_uc011cxk.1_Silent_p.E792E	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	1114					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGGAAAGCTGTTCAGCTTGGT	0.418000													14	396					0	0	0.132662	0	0
TGFBI	7045	broad.mit.edu	37	5	135382085	135382085	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:135382085G>A	uc003lbf.3	+	4	521	c.360G>A	c.(358-360)CTG>CTA	p.L120L	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_5'UTR|TGFBI_uc011cyb.1_5'UTR	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	120	FAS1 1.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCACTCAGCTGTACACGGACC	0.622000													9	226					0	0	0.069234	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229215	140229215	+	Missense_Mutation	SNP	G	A	A	rs151053430	byFrequency	TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:140229215G>A	uc003lhu.2	+	1	1859	c.1135G>A	c.(1135-1137)GCA>ACA	p.A379T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.A379T	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	379	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGACCTAGACGCAGATGCCAA	0.532000													8	431					0	0	0.047766	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:140553994G>T	uc003lit.2	+	1	1752	c.1578G>T	c.(1576-1578)GCG>GCT	p.A526A		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	526	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTGCAGGCGTTCGAGTTCC	0.706000													6	380					5.50884e-06	5.94954e-06	0.093190	1	0
JARID2	3720	broad.mit.edu	37	6	15496457	15496457	+	Missense_Mutation	SNP	A	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr6:15496457A>C	uc003nbj.2	+	7	1245	c.1001A>C	c.(1000-1002)AAA>ACA	p.K334T	JARID2_uc011diu.1_Missense_Mutation_p.K198T|JARID2_uc011div.1_Missense_Mutation_p.K162T|JARID2_uc011diw.1_Missense_Mutation_p.K296T	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	334					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				TCACCATCCAAAACTGTGAAG	0.517000													4	320					0	0	0.150653	0	0
BTN3A3	10384	broad.mit.edu	37	6	26452439	26452439	+	Missense_Mutation	SNP	G	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr6:26452439G>C	uc003nhz.2	+	11	1735	c.1555G>C	c.(1555-1557)GAG>CAG	p.E519Q	BTN3A3_uc003nia.2_Missense_Mutation_p.E477Q|BTN3A3_uc011dkn.1_Missense_Mutation_p.E470Q	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	519	Cytoplasmic (Potential).					integral to membrane					0						AAAAGAAGTAGAGAGTTCCCC	0.517000													6	451					0	0	0.029380	0	0
DNAH8	1769	broad.mit.edu	37	6	38906655	38906655	+	Silent	SNP	C	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr6:38906655C>A	uc003ooe.1	+	77	11847	c.11247C>A	c.(11245-11247)GTC>GTA	p.V3749V	DNAH8_uc003oog.1_Silent_p.V198V|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CATACTCTGTCAGAGGCCTAT	0.373000													11	207					0.00829132	0.00844776	0.069234	1	0
FAM83B	222584	broad.mit.edu	37	6	54805775	54805775	+	Missense_Mutation	SNP	A	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr6:54805775A>G	uc003pck.2	+	5	2122	c.2006A>G	c.(2005-2007)GAC>GGC	p.D669G		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	669										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CCGTTATTTGACAACTCAAAA	0.343000													11	344					0	0	0.069234	0	0
GRB10	2887	broad.mit.edu	37	7	50694652	50694652	+	Silent	SNP	A	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr7:50694652A>G	uc003tpi.2	-	5	559	c.528T>C	c.(526-528)GAT>GAC	p.D176D	GRB10_uc003tph.3_Silent_p.D118D|GRB10_uc003tpj.2_Silent_p.D176D|GRB10_uc003tpk.2_Silent_p.D176D|GRB10_uc010kzb.2_Silent_p.D118D|GRB10_uc003tpl.2_Silent_p.D170D|GRB10_uc003tpm.2_Silent_p.D118D|GRB10_uc003tpn.2_Silent_p.D118D	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	176	Ras-associating.				insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					TGCTTGTCCCATCTTCACTAA	0.413000									Russell-Silver_syndrome				17	866					0	0	0.108266	0	0
POM121L12	285877	broad.mit.edu	37	7	53104137	53104137	+	Missense_Mutation	SNP	A	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr7:53104137A>T	uc003tpz.2	+	1	789	c.773A>T	c.(772-774)CAG>CTG	p.Q258L		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	258											0						GTGCTGGTCCAGCCCGCCCCA	0.652000													6	219					0	0	0.217242	0	0
MUC17	140453	broad.mit.edu	37	7	100699552	100699552	+	Splice_Site	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr7:100699552G>A	uc003uxp.1	+	12	13493	c.13440_splice	c.e12+1	p.K4480_splice	MUC17_uc010lho.1_Splice_Site	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor							extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGAAACAAAGGTAAGAAGGGC	0.488000													7	195					0	0	0.029380	0	0
FLJ10661	286042	broad.mit.edu	37	8	8095839	8095839	+	RNA	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr8:8095839C>G	uc011kwt.1	+	8		c.1034C>G			FLJ10661_uc010lrq.2_Intron|FLJ10661_uc003wsf.3_Intron	NR_024362				Homo sapiens cDNA FLJ60033 complete cds, highly similar to Protein FAM86A.												0						CAGAGAAGAGCAGACACTGCC	0.602000													5	181					0	0	0.217242	0	0
SGCZ	137868	broad.mit.edu	37	8	14181630	14181630	+	Missense_Mutation	SNP	T	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr8:14181630T>A	uc003wwq.2	-	3	978	c.318A>T	c.(316-318)AAA>AAT	p.K106N	SGCZ_uc010lss.2_Intron	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	93	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		AATGAATTTCTTTCACATACA	0.373000													7	222					0	0	0.038147	0	0
RUSC2	9853	broad.mit.edu	37	9	35558250	35558250	+	Nonsense_Mutation	SNP	C	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr9:35558250C>G	uc003zww.2	+	7	3372	c.3117C>G	c.(3115-3117)TAC>TAG	p.Y1039*	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Nonsense_Mutation_p.Y1039*	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	1039	RUN.					cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			TTCTGAAGTACTTGTGCCCTG	0.582000													7	260					0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	9	68413572	68413572	+	RNA	SNP	C	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr9:68413572C>T	uc004aex.2	+	1		c.127C>T								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		CCAGTGGCGCCGGATCTAGGA	0.567000													3	13					0	0	0.115264	0	0
FAM75C1	441452	broad.mit.edu	37	9	90538165	90538165	+	Missense_Mutation	SNP	A	C	C			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr9:90538165A>C	uc010mqi.2	+	4	3372	c.3343A>C	c.(3343-3345)AGC>CGC	p.S1115R	FAM75C1_uc004apq.3_Missense_Mutation_p.S1098R	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CAGAATGCTGAGCTATGCAGC	0.517000													18	682					0	0	0.160694	0	0
DBH	1621	broad.mit.edu	37	9	136509404	136509404	+	Missense_Mutation	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr9:136509404G>A	uc004cel.2	+	5	995	c.986G>A	c.(985-987)CGC>CAC	p.R329H		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	329	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	AGATATCTCCGCCTGGAAGTT	0.582000													7	245					0	0	0.029380	0	0
PRPS2	5634	broad.mit.edu	37	X	12837794	12837794	+	Silent	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chrX:12837794G>A	uc004cvb.2	+	5	823	c.699G>A	c.(697-699)GCG>GCA	p.A233A	PRPS2_uc004cva.2_Silent_p.A236A|PRPS2_uc010nec.2_Intron	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	233					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						GCCATGCTGCGGACAAGTACG	0.537000													16	705					0	0	0.175082	0	0
MTMR8	55613	broad.mit.edu	37	X	63579299	63579299	+	Missense_Mutation	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chrX:63579299G>A	uc004dvs.2	-	2	201	c.133C>T	c.(133-135)CGG>TGG	p.R45W	MTMR8_uc011mou.1_Missense_Mutation_p.R45W|MTMR8_uc004dvt.1_Missense_Mutation_p.R45W	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	45						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						GTTTCTTTCCGGGCTGCACCT	0.408000													6	299					0	0	0.029380	0	0
FRMD7	90167	broad.mit.edu	37	X	131231310	131231310	+	Missense_Mutation	SNP	G	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chrX:131231310G>A	uc004ewn.2	-	4	446	c.268C>T	c.(268-270)CGG>TGG	p.R90W	FRMD7_uc011muy.1_Missense_Mutation_p.R75W	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	90	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AGTTCTTCCCGCAGATGTCCA	0.368000													23	861					0	0	0.069288	0	0
OR2T2	401992	broad.mit.edu	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	-	-			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr1:248616705_248616711delTGCTGCG	uc001iek.1	+	1	607_613	c.607_613delTGCTGCG	c.(607-615)TGCTGCGTGfs	p.C203fs		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	203_205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GATGTATGCCTGCTGCGTGCTGATGCT	0.527													9	424	---	---	---	---					
TMEM132A	54972	broad.mit.edu	37	11	60703785	60703787	+	In_Frame_Del	DEL	GGA	-	-			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr11:60703785_60703787delGGA	uc001nqj.2	+	11	2671_2673	c.2478_2480delGGA	c.(2476-2481)AGGGAG>AGG	p.E835del	TMEM132A_uc001nqi.2_In_Frame_Del_p.E836del|TMEM132A_uc001nqm.2_In_Frame_Del_p.E45del	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	835	Glu-rich.|Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CCGAAGCCAGggaggaggaggag	0.547													7	414	---	---	---	---					
SLC39A5	283375	broad.mit.edu	37	12	56628997	56628999	+	In_Frame_Del	DEL	CTG	-	-			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr12:56628997_56628999delCTG	uc010sqj.1	+	7	948_950	c.691_693delCTG	c.(691-693)CTGdel	p.L234del	SLC39A5_uc010sqi.1_In_Frame_Del_p.L125del|SLC39A5_uc010sqk.1_In_Frame_Del_p.L234del	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	234	Cytoplasmic (Potential).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						TCCCCTATCCCTGCTGCTGCTGC	0.635													7	780	---	---	---	---					
DZIP1	22873	broad.mit.edu	37	13	96234534	96234535	+	Frame_Shift_Ins	INS	-	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr13:96234534_96234535insT	uc001vmk.2	-	23	3409_3410	c.2557_2558insA	c.(2557-2559)AGCfs	p.S853fs	DZIP1_uc010afn.2_5'Flank|DZIP1_uc001vmi.2_Frame_Shift_Ins_p.S101fs|DZIP1_uc001vmj.2_Frame_Shift_Ins_p.S329fs|DZIP1_uc001vml.2_Frame_Shift_Ins_p.S834fs|DZIP1_uc001vmm.2_RNA	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	853					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			TACTAAGCTGCTTTTTAATGTG	0.406													8	478	---	---	---	---					
TRIM9	114088	broad.mit.edu	37	14	51446204	51446205	+	Frame_Shift_Ins	INS	-	T	T			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr14:51446204_51446205insT	uc001wyx.3	-	9	2735_2736	c.1970_1971insA	c.(1969-1971)AACfs	p.N657fs	TRIM9_uc001wyy.2_Frame_Shift_Ins_p.N738fs	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	657	B30.2/SPRY.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					AAAATGTCAAGTTTTTTCTATT	0.455													28	1238	---	---	---	---					
CEACAM1	634	broad.mit.edu	37	19	43026145	43026151	+	Frame_Shift_Del	DEL	GTCCTGT	-	-			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr19:43026145_43026151delGTCCTGT	uc002otv.2	-	3	741_747	c.628_634delACAGGAC	c.(628-636)ACAGGACCCfs	p.T210fs	uc010eif.1_Intron|uc002ott.1_RNA|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_5'Flank|CEACAM1_uc002otw.2_Frame_Shift_Del_p.T210fs|CEACAM1_uc010eij.2_Frame_Shift_Del_p.T210fs|CEACAM1_uc002otx.2_Frame_Shift_Del_p.T210fs|CEACAM1_uc002oty.2_Frame_Shift_Del_p.T210fs|CEACAM1_uc002otz.2_Frame_Shift_Del_p.T210fs|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Frame_Shift_Del_p.T210fs|CEACAM1_uc002oub.2_Frame_Shift_Del_p.T210fs|CEACAM1_uc002ouc.2_Frame_Shift_Del_p.T210fs	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	210_212	Ig-like C2-type 1.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	CACTCATAGGGTCCTGTGTCATTCCTT	0.536													7	967	---	---	---	---					
U2AF1	7307	broad.mit.edu	37	21	44513281	44513282	+	In_Frame_Ins	INS	-	CCG	CCG	rs144595259		TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr21:44513281_44513282insCCG	uc002zda.1	-	8	737_738	c.653_654insCGG	c.(652-654)GGT>GGCGGT	p.218_218G>GG	U2AF1_uc002zcy.1_In_Frame_Ins_p.145_145G>GG|U2AF1_uc002zcz.1_In_Frame_Ins_p.145_145G>GG|U2AF1_uc002zdb.1_In_Frame_Ins_p.218_218G>GG|U2AF1_uc010gpi.1_3'UTR	NM_001025203	NP_001020374	Q01081	U2AF1_HUMAN	U2 small nuclear RNA auxillary factor 1 isoform	218	Arg/Gly/Ser-rich (RS domain).|Poly-Gly.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	Cajal body|catalytic step 2 spliceosome|nuclear speck	nucleotide binding|RNA binding|zinc ion binding				0						cgccacctccaccaccgccacc	0.406													8	264	---	---	---	---					
TBC1D23	55773	broad.mit.edu	37	3	100039735	100039736	+	Frame_Shift_Ins	INS	-	A	A			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr3:100039735_100039736insA	uc003dtt.2	+	18	2115_2116	c.1938_1939insA	c.(1936-1941)TCCAAAfs	p.S646fs	TBC1D23_uc003dts.2_Frame_Shift_Ins_p.S631fs|TBC1D23_uc003dtu.2_Frame_Shift_Ins_p.S77fs	NM_018309	NP_060779	Q9NUY8	TBC23_HUMAN	TBC1 domain family, member 23	646_647						intracellular	Rab GTPase activator activity			ovary(1)|liver(1)	2						AAATTACATCCAAAAAAAAACA	0.356													7	246	---	---	---	---					
TNK2	10188	broad.mit.edu	37	3	195595228	195595229	+	Frame_Shift_Ins	INS	-	G	G			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr3:195595228_195595229insG	uc003fvu.1	-	12	2438_2439	c.1895_1896insC	c.(1894-1896)CCGfs	p.P632fs	TNK2_uc003fvq.1_Frame_Shift_Ins_p.P39fs|TNK2_uc003fvr.1_Frame_Shift_Ins_p.P157fs|TNK2_uc003fvs.1_Frame_Shift_Ins_p.P664fs|TNK2_uc003fvt.1_Frame_Shift_Ins_p.P710fs|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_3'UTR	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	632	Required for interaction with SRC.|Required for interaction with NEDD4 (By similarity).|Pro-rich.			Missing (in Ref. 4; AAH08884).	positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	CATAGGCGGGCGGGGGGGGCAG	0.728													8	303	---	---	---	---					
PKD2	5311	broad.mit.edu	37	4	88929174	88929176	+	In_Frame_Del	DEL	GAG	-	-			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr4:88929174_88929176delGAG	uc003hre.2	+	1	355_357	c.289_291delGAG	c.(289-291)GAGdel	p.E102del		NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	102	Poly-Glu.|Cytoplasmic (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		CTTCGAGGCCgaggaggaggagg	0.498													2	4	---	---	---	---					
PAM	5066	broad.mit.edu	37	5	102296908	102296910	+	In_Frame_Del	DEL	AGA	-	-			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:102296908_102296910delAGA	uc003knw.2	+	13	1510_1512	c.1137_1139delAGA	c.(1135-1140)CGAGAA>CGA	p.E383del	PAM_uc003kns.2_In_Frame_Del_p.E383del|PAM_uc003knt.2_In_Frame_Del_p.E383del|PAM_uc003knu.2_In_Frame_Del_p.E383del|PAM_uc003knv.2_In_Frame_Del_p.E383del|PAM_uc011cuz.1_In_Frame_Del_p.E286del|PAM_uc003knx.1_In_Frame_Del_p.E75del	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	383	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	AGCCAAAACGAGAAGAAGAAGAA	0.325													7	423	---	---	---	---					
MATR3	9782	broad.mit.edu	37	5	138658492	138658494	+	In_Frame_Del	DEL	GAA	-	-			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr5:138658492_138658494delGAA	uc003ldu.2	+	15	2411_2413	c.1984_1986delGAA	c.(1984-1986)GAAdel	p.E664del	MATR3_uc010jfb.2_In_Frame_Del_p.E664del|MATR3_uc003ldt.2_In_Frame_Del_p.E326del|MATR3_uc003ldw.2_In_Frame_Del_p.E664del|MATR3_uc003ldx.2_In_Frame_Del_p.E664del|MATR3_uc010jfc.2_In_Frame_Del_p.E664del|MATR3_uc003ldy.2_In_Frame_Del_p.E341del|MATR3_uc011czb.1_In_Frame_Del_p.E376del|MATR3_uc003ldz.2_In_Frame_Del_p.E664del|MATR3_uc003lea.2_In_Frame_Del_p.E664del|MATR3_uc003leb.2_In_Frame_Del_p.E326del|MATR3_uc003lec.2_In_Frame_Del_p.E341del	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	664						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			ACTTGTAGATGAAGAAGAAGCAG	0.453													11	425	---	---	---	---					
PRDM1	639	broad.mit.edu	37	6	106555175	106555175	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr6:106555175delA	uc003prd.2	+	7	2526	c.2292delA	c.(2290-2292)AGAfs	p.R764fs	PRDM1_uc003pre.2_Frame_Shift_Del_p.R630fs	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	764					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CCGTGGTCAGAAAAGAGAAAG	0.478			D|N|Mis|F|S		DLBCL								10	445	---	---	---	---					
TSNARE1	203062	broad.mit.edu	37	8	143310866	143310868	+	In_Frame_Del	DEL	GAT	-	-	rs142964918		TCGA-FQ-6551-01A-11D-1795-08	TCGA-FQ-6551-11A-01D-1795-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a530f52-b3b0-4670-9af6-91fc2d15738a	a9905c29-746b-42fe-a618-13d514f2a644	g.chr8:143310866_143310868delGAT	uc003ywk.2	-	13	1637_1639	c.1519_1521delATC	c.(1519-1521)ATCdel	p.I507del	TSNARE1_uc011lju.1_In_Frame_Del_p.I506del|TSNARE1_uc003ywj.2_In_Frame_Del_p.I508del	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	507	Poly-Ile.|Helical; (Potential).				vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CAGAGGTGGCGATGATGATGATG	0.414													7	357	---	---	---	---					
