Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SCNN1D	6339	broad.mit.edu	37	1	1226673	1226673	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:1226673C>T	uc001adu.1	+	17	2224	c.1600C>T	c.(1600-1602)CTG>TTG	p.L534L	SCNN1D_uc001adt.1_Silent_p.L698L|SCNN1D_uc001adw.2_Silent_p.L600L|SCNN1D_uc001adx.2_Silent_p.L323L|SCNN1D_uc001adv.2_Silent_p.L534L	NM_002978	NP_002969			sodium channel, nonvoltage-gated 1, delta												0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.46e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		CCTCTGCAGCCTGTGGTTTGG	0.726													9	2					0	0	0.004482	0	0
TPRG1L	127262	broad.mit.edu	37	1	3542430	3542430	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:3542430G>A	uc001akm.2	+	3	528	c.447G>A	c.(445-447)CAG>CAA	p.Q149Q	TPRG1L_uc009vlj.2_Intron	NM_182752	NP_877429	Q5T0D9	TPRGL_HUMAN	tumor protein p63 regulated 1-like	149						cell junction|synaptic vesicle					0	all_cancers(77;0.0119)|all_epithelial(69;0.00481)|Ovarian(185;0.0634)|Lung NSC(156;0.162)|all_lung(157;0.172)	all_epithelial(116;7.37e-22)|all_lung(118;8.23e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.41e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.83e-22)|GBM - Glioblastoma multiforme(42;4.77e-14)|Colorectal(212;1.12e-05)|COAD - Colon adenocarcinoma(227;5.61e-05)|Kidney(185;0.000351)|BRCA - Breast invasive adenocarcinoma(365;0.000688)|KIRC - Kidney renal clear cell carcinoma(229;0.00553)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.201)		GAGAATTCCAGTTTCCCCCTA	0.488													19	12					0	0	0.006122	0	0
TCEA3	6920	broad.mit.edu	37	1	23743760	23743760	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:23743760C>T	uc001bgx.1	-	4	497	c.362G>A	c.(361-363)CGA>CAA	p.R121Q	TCEA3_uc009vqn.1_Missense_Mutation_p.R100Q|TCEA3_uc010ody.1_Missense_Mutation_p.R84Q	NM_003196	NP_003187	O75764	TCEA3_HUMAN	transcription elongation factor A (SII), 3	121					regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	nucleus	DNA binding|translation elongation factor activity|zinc ion binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.16e-05)|all_lung(284;6.68e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.0054)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.6e-25)|Colorectal(126;8.32e-08)|COAD - Colon adenocarcinoma(152;4.29e-06)|GBM - Glioblastoma multiforme(114;9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00424)|STAD - Stomach adenocarcinoma(196;0.0145)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0963)|LUSC - Lung squamous cell carcinoma(448;0.198)		GGGGTCTTCTCGTTTTTTCCT	0.353													32	30					0	0	0.003271	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26899811	26899811	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:26899811C>T	uc001bmr.1	+	21	2207	c.2044C>T	c.(2044-2046)CCC>TCC	p.P682S	RPS6KA1_uc010ofe.1_Missense_Mutation_p.P590S|RPS6KA1_uc001bms.1_Missense_Mutation_p.P691S|RPS6KA1_uc009vsl.1_Missense_Mutation_p.P525S	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	682					axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		AGACAAGCTTCCCCAAAGCCA	0.602													38	34					0	0	0.006230	0	0
CSMD2	114784	broad.mit.edu	37	1	34006741	34006741	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:34006741G>A	uc001bxn.1	-	58	9043	c.9014C>T	c.(9013-9015)CCC>CTC	p.P3005L	CSMD2_uc001bxm.1_Missense_Mutation_p.P3149L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3005	Extracellular (Potential).|Sushi 22.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TTTGCAGACGGGCTTGGTTCC	0.498													38	37					0	0	0.011902	0	0
GRIK3	2899	broad.mit.edu	37	1	37291238	37291238	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:37291238G>T	uc001caz.2	-	11	1855	c.1720C>A	c.(1720-1722)CTG>ATG	p.L574M	GRIK3_uc001cba.1_Missense_Mutation_p.L574M	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	574	Helical; (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CTGACCCCCAGGTAGGCGAGG	0.567													14	21					1.05317e-09	1.08875e-09	0.002450	1	0
PPT1	5538	broad.mit.edu	37	1	40539851	40539851	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:40539851C>T	uc001cfb.2	-	9	1035	c.803G>A	c.(802-804)CGC>CAC	p.R268H	PPT1_uc010ojf.1_Missense_Mutation_p.R194H|PPT1_uc010ojg.1_Missense_Mutation_p.R165H|PPT1_uc009vwa.2_RNA	NM_000310	NP_000301	P50897	PPT1_HUMAN	palmitoyl-protein thioesterase 1 isoform 1	268					brain development|cofactor metabolic process|cofactor transport|DNA fragmentation involved in apoptotic nuclear change|lysosomal lumen acidification|membrane raft organization|negative regulation of cell growth|negative regulation of neuron apoptosis|neuron development|pinocytosis|positive regulation of pinocytosis|positive regulation of receptor-mediated endocytosis|protein depalmitoylation|protein transport|receptor-mediated endocytosis|regulation of synapse structure and activity|sphingolipid catabolic process|visual perception	axon|cytosol|Golgi apparatus|lysosome|membrane fraction|membrane raft|nucleus|synaptic vesicle	palmitoyl-(protein) hydrolase activity|palmitoyl-CoA hydrolase activity			ovary(1)	1	Lung NSC(20;3.43e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1e-18)|Epithelial(16;3.6e-17)|all cancers(16;1.1e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TAGCCCCAGGCGGTCCTGCAG	0.403													4	60					0	0	0.001168	0	0
ANKRD13C	81573	broad.mit.edu	37	1	70819825	70819826	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:70819825_70819826GG>AA	uc001dex.3	-	1	592_593	c.266_267CC>TT	c.(265-267)TCC>TTT	p.S89F	ANKRD13C_uc009wbk.2_Missense_Mutation_p.S89F|ANKRD13C_uc001dey.3_Missense_Mutation_p.S89F|HHLA3_uc010oqp.1_5'Flank|HHLA3_uc001dfa.2_5'Flank|HHLA3_uc001dfb.2_5'Flank|HHLA3_uc001dfc.2_5'Flank	NM_030816	NP_110443	Q8N6S4	AN13C_HUMAN	ankyrin repeat domain 13C	89					protein retention in ER lumen|regulation of anoikis|regulation of receptor biosynthetic process	endoplasmic reticulum membrane|perinuclear region of cytoplasm	receptor binding				0						CCGGGGACTGGGAGTTGGCAGT	0.673													47	92					0	0	0.004672	0	0
STXBP3	6814	broad.mit.edu	37	1	109338903	109338903	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:109338903C>T	uc001dvy.2	+	14	1233	c.1158C>T	c.(1156-1158)TCC>TCT	p.S386S	STXBP3_uc001dvz.2_RNA	NM_007269	NP_009200	O00186	STXB3_HUMAN	syntaxin binding protein 3	386					negative regulation of calcium ion-dependent exocytosis|neutrophil degranulation|platelet aggregation|protein transport|vesicle docking involved in exocytosis	cytosol|nucleus|platelet alpha granule|specific granule|tertiary granule	syntaxin-2 binding			ovary(3)|central_nervous_system(1)	4		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0386)|Lung(183;0.104)|COAD - Colon adenocarcinoma(174;0.137)|Epithelial(280;0.231)		TGAAAGATTCCATGCGAGTAC	0.328													10	33					0	0	0.008291	0	0
AMPD1	270	broad.mit.edu	37	1	115221019	115221019	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:115221019C>T	uc001efe.1	-	8	1111	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	AMPD1_uc001eff.1_Missense_Mutation_p.E339K	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	343					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GCAAAAAGTTCCTTTAGGGTC	0.378													24	44					0	0	0.003330	0	0
KPRP	448834	broad.mit.edu	37	1	152732718	152732718	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:152732718C>T	uc001fal.1	+	2	712	c.654C>T	c.(652-654)TTC>TTT	p.F218F		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	218						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCAGCTGTTTCCCTCAGTATC	0.572													52	103					0	0	0.003610	0	0
C1orf66	51093	broad.mit.edu	37	1	156702139	156702139	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:156702139C>T	uc001fpu.2	+	3	937	c.303C>T	c.(301-303)ACC>ACT	p.T101T	C1orf66_uc001fpv.2_Silent_p.T101T	NM_015997	NP_057081	Q96FB5	RRNAD_HUMAN	hypothetical protein LOC51093 isoform 1	101						integral to membrane	rRNA (adenine-N6,N6-)-dimethyltransferase activity				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGGCCTTTACCCGGATGCCTG	0.597													16	59					0	0	0.006122	0	0
CD5L	922	broad.mit.edu	37	1	157803140	157803140	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:157803140G>T	uc001frk.3	-	5	1024	c.881C>A	c.(880-882)TCC>TAC	p.S294Y		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	294	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GTCTCTGAAGGAGGGAGAGAG	0.587													32	64					8.4185e-14	8.85245e-14	0.012213	1	0
CD1E	913	broad.mit.edu	37	1	158325195	158325195	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:158325195C>T	uc001fse.2	+	3	700	c.461C>T	c.(460-462)TCC>TTC	p.S154F	CD1E_uc010pid.1_Missense_Mutation_p.S152F|CD1E_uc010pie.1_Missense_Mutation_p.S55F|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.S154F|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.S154F|CD1E_uc001fry.2_Missense_Mutation_p.S154F|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.S154F|CD1E_uc009wsv.2_Missense_Mutation_p.S55F|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	154					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					CAAGGAATTTCCTGGGAGCCA	0.448													33	57					0	0	0.002836	0	0
SELE	6401	broad.mit.edu	37	1	169701065	169701065	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:169701065G>A	uc001ggm.3	-	4	597	c.440C>T	c.(439-441)TCC>TTC	p.S147F	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	147	EGF-like.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					GCCACTGCAGGATGTATTGGT	0.443													5	19					0	0	0.001168	0	0
PAPPA2	60676	broad.mit.edu	37	1	176671784	176671784	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:176671784C>T	uc001gkz.2	+	9	4442	c.3278C>T	c.(3277-3279)GCT>GTT	p.A1093V	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1093					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CAAGTTCTAGCTGAAGCTGGA	0.502													21	44					0	0	0.012319	0	0
NFASC	23114	broad.mit.edu	37	1	204985617	204985617	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:204985617G>A	uc001hbj.2	+	30	4001	c.3673G>A	c.(3673-3675)GAA>AAA	p.E1225K	NFASC_uc010pra.1_Missense_Mutation_p.E1159K|NFASC_uc001hbi.2_Missense_Mutation_p.E1154K|NFASC_uc010prb.1_Missense_Mutation_p.E1174K|NFASC_uc010prc.1_Missense_Mutation_p.E725K|NFASC_uc001hbl.1_Missense_Mutation_p.E301K|NFASC_uc001hbm.1_Missense_Mutation_p.E248K|NFASC_uc009xbh.1_Silent_p.T79T|NFASC_uc001hbo.1_Silent_p.T100T	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	1332	Cytoplasmic (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AGAGGGCAACGAAAGCTCAGA	0.572													18	46					0	0	0.006122	0	0
RGS7	6000	broad.mit.edu	37	1	240964804	240964804	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:240964804C>T	uc001hyv.2	-	17	1694	c.1364G>A	c.(1363-1365)GGA>GAA	p.G455E	RGS7_uc010pyh.1_Intron|RGS7_uc010pyj.1_Intron|RGS7_uc001hyu.2_Intron|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Intron|RGS7_uc001hyt.2_Missense_Mutation_p.G287E	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	455					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CATTGAGTTTCCAGACTTACG	0.244													3	17					0	0	0.009096	0	0
WDR64	128025	broad.mit.edu	37	1	241904917	241904917	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:241904917A>G	uc001hze.1	+	11	1598	c.1391A>G	c.(1390-1392)AAC>AGC	p.N464S	WDR64_uc001hzf.1_Missense_Mutation_p.N184S			B1ANS9	WDR64_HUMAN	RecName: Full=WD repeat-containing protein 64;	464	WD 6.									skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			ATGCTTTACAACAAATATTTT	0.348													9	20					0	0	0.004482	0	0
OR2L13	284521	broad.mit.edu	37	1	248262875	248262875	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:248262875C>T	uc001ids.2	+	3	535	c.198C>T	c.(196-198)TCC>TCT	p.S66S		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			GCCAGCTCTCCCTTATGGACC	0.537													47	102					0	0	0.003610	0	0
OR2M3	127062	broad.mit.edu	37	1	248367245	248367245	+	Silent	SNP	C	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:248367245C>A	uc010pzg.1	+	1	876	c.876C>A	c.(874-876)CTC>CTA	p.L292L		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCTACAGCCTCCGCAACAAGG	0.473													30	51					1.06801e-11	1.10784e-11	0.009535	1	0
CALML5	51806	broad.mit.edu	37	10	5541195	5541195	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr10:5541195G>A	uc001iic.2	-	1	339	c.207C>T	c.(205-207)TTC>TTT	p.F69F		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	69	EF-hand 2.				epidermis development|signal transduction		calcium ion binding|protein binding				0						CCGCCGTCAGGAACTCCTGGA	0.657													17	33					0	0	0.007413	0	0
IL15RA	3601	broad.mit.edu	37	10	5995144	5995144	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr10:5995144C>T	uc001iiv.2	-	7	800	c.718G>A	c.(718-720)GAA>AAA	p.E240K	IL15RA_uc001iiu.2_Intron|IL15RA_uc010qau.1_Missense_Mutation_p.E207K|IL15RA_uc001iiw.2_Missense_Mutation_p.E204K|IL15RA_uc001iix.2_Missense_Mutation_p.E171K|IL15RA_uc001iiy.2_Missense_Mutation_p.E88K	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	240	Cytoplasmic (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						GCTTCCATTTCAACGCTGGCC	0.547													42	58					0	0	0.003610	0	0
PLXDC2	84898	broad.mit.edu	37	10	20335859	20335859	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr10:20335859G>A	uc001iqg.1	+	3	1023	c.386G>A	c.(385-387)CGG>CAG	p.R129Q	PLXDC2_uc001iqh.1_Intron	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	129	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TCTGCCAGCCGGGATTTATGG	0.373													32	66					0	0	0.010818	0	0
FAM13C	220965	broad.mit.edu	37	10	61007471	61007471	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr10:61007471G>A	uc001jkn.2	-	15	1795	c.1661C>T	c.(1660-1662)CCA>CTA	p.P554L	PHYHIPL_uc001jkk.3_3'UTR|PHYHIPL_uc001jkl.3_3'UTR|PHYHIPL_uc001jkm.3_3'UTR|FAM13C_uc001jko.2_Missense_Mutation_p.P456L|FAM13C_uc010qid.1_Missense_Mutation_p.P470L|FAM13C_uc010qie.1_Missense_Mutation_p.P471L	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	554										ovary(2)	2						ATCTGCCATTGGTATCCTATC	0.328													32	18					0	0	0.010818	0	0
MINPP1	9562	broad.mit.edu	37	10	89264929	89264929	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr10:89264929T>G	uc001keu.2	+	1	707	c.257T>G	c.(256-258)CTC>CGC	p.L86R	MINPP1_uc009xtf.1_RNA|MINPP1_uc001kev.2_Missense_Mutation_p.L86R	NM_004897	NP_004888	Q9UNW1	MINP1_HUMAN	multiple inositol polyphosphate histidine	86					bone mineralization|polyphosphate metabolic process	endoplasmic reticulum lumen	acid phosphatase activity|bisphosphoglycerate 3-phosphatase activity|multiple inositol-polyphosphate phosphatase activity|phosphohistidine phosphatase activity			urinary_tract(1)	1		Colorectal(252;0.122)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00123)		CTGGTCGCCCTCATTCGCCAC	0.692											OREG0020348	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	8					0	0	0.003080	0	0
BTRC	8945	broad.mit.edu	37	10	103310575	103310575	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr10:103310575C>T	uc001kta.2	+	14	1889	c.1776C>T	c.(1774-1776)CCC>CCT	p.P592P	BTRC_uc001ktb.2_Silent_p.P556P|BTRC_uc001ktc.2_Silent_p.P566P	NM_033637	NP_378663	Q9Y297	FBW1A_HUMAN	beta-transducin repeat containing protein	592					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|positive regulation of proteolysis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|viral reproduction|Wnt receptor signaling pathway	cytosol|nucleus|SCF ubiquitin ligase complex				ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;1.05e-08)|all cancers(201;6.59e-07)		AAGCTGAACCCCCCCGTTCCC	0.438													20	24					0	0	0.012319	0	0
GPR123	84435	broad.mit.edu	37	10	134910573	134910573	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr10:134910573G>A	uc001llx.3	+	3	535	c.99G>A	c.(97-99)CTG>CTA	p.L33L	GPR123_uc001llw.2_Silent_p.L753L	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	33	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		TCTGCCTCCTGGCCTCCTTCG	0.622													25	26					0	0	0.003954	0	0
MUC6	4588	broad.mit.edu	37	11	1018448	1018448	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:1018448G>A	uc001lsw.2	-	31	4404	c.4353C>T	c.(4351-4353)TCC>TCT	p.S1451S		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1451	Pro-rich.|Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCAAGGAGGTGGAGAAAGGTG	0.552													11	382					0	0	0.001855	0	0
MUC5B	727897	broad.mit.edu	37	11	1260184	1260184	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:1260184G>A	uc009ycr.1	+	42	5586	c.5460G>A	c.(5458-5460)ACG>ACA	p.T1820T	MUC5B_uc009yct.1_Silent_p.T1127T|MUC5B_uc001ltb.2_Silent_p.T1130T|MUC5B_uc001lta.2_Silent_p.T795T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1127	Cys-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GTTTCTGCACGGCTGTGGCTG	0.672													3	6					0	0	0.004672	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587													5	46					0	0	0.000602	0	0
OR51E2	81285	broad.mit.edu	37	11	4703846	4703846	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:4703846G>A	uc001lzk.2	-	2	340	c.96C>T	c.(94-96)TCC>TCT	p.S32S		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CTACATACATGGAAAGGAGGG	0.498													21	37					0	0	0.012319	0	0
OR51L1	119682	broad.mit.edu	37	11	5020909	5020909	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:5020909C>T	uc010qyu.1	+	1	697	c.697C>T	c.(697-699)CGT>TGT	p.R233C		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TATTGCATCTCGTGAAGAGCA	0.418													21	37					0	0	0.008871	0	0
HBD	3045	broad.mit.edu	37	11	5255401	5255401	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:5255401G>A	uc001maf.1	-	2	330	c.135C>T	c.(133-135)TCC>TCT	p.S45S		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	45					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATCCCCAAAGGACTCAAAGA	0.527													28	62					0	0	0.008361	0	0
OR52N4	390072	broad.mit.edu	37	11	5776500	5776500	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:5776500C>T	uc001mbu.2	+	1	578	c.530C>T	c.(529-531)CCC>CTC	p.P177L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		AATATACTTCCCCATACCTAC	0.493													33	59					0	0	0.010818	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111505	7111505	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:7111505G>A	uc001mfc.2	+	1	1341	c.1154G>A	c.(1153-1155)AGA>AAA	p.R385K		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	385	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CGCTTGGAGAGAGGAGGAGGC	0.552													9	11					0	0	0.010729	0	0
CALCA	796	broad.mit.edu	37	11	14992719	14992719	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:14992719G>A	uc001mlt.1	-	2	95	c.20C>T	c.(19-21)TCC>TTC	p.S7F	CALCA_uc001mlu.1_RNA|CALCA_uc001mlv.1_Missense_Mutation_p.S7F|CALCA_uc001mlw.1_Missense_Mutation_p.S7F	NM_001033953	NP_001029125	P06881	CALCA_HUMAN	calcitonin isoform CGRP preproprotein	7					activation of adenylate cyclase activity|cell-cell signaling|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|endothelial cell migration|endothelial cell proliferation|leukocyte cell-cell adhesion|negative regulation of blood pressure|negative regulation of bone resorption|negative regulation of calcium ion transport into cytosol|negative regulation of osteoclast differentiation|neurological system process involved in regulation of systemic arterial blood pressure|positive regulation of interleukin-1 alpha production|positive regulation of interleukin-8 production|positive regulation of macrophage differentiation|positive regulation of vasodilation|regulation of blood pressure|vasculature development|vasodilation	cytosol|extracellular space	hormone activity			central_nervous_system(1)	1					Phentolamine(DB00692)	CAGGAAGGGGGAGAACTTTTG	0.542													21	41					0	0	0.002780	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16877421	16877421	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:16877421G>A	uc001mmo.2	-	5	361	c.346C>T	c.(346-348)CCG>TCG	p.P116S	PLEKHA7_uc010rcu.1_Missense_Mutation_p.P116S	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	116					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						ATGCTGGACGGTCTTTGGTTT	0.552													72	126					0	0	0.003610	0	0
OR4A47	403253	broad.mit.edu	37	11	48510798	48510798	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:48510798C>T	uc010rhx.1	+	1	454	c.454C>T	c.(454-456)CTG>TTG	p.L152L		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGAGGATTTCTGCACTCAGT	0.428													23	47					0	0	0.012319	0	0
OR4A15	81328	broad.mit.edu	37	11	55136340	55136340	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:55136340G>A	uc010rif.1	+	1	981	c.981G>A	c.(979-981)AGG>AGA	p.R327R		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	327	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTGCCATGAGGAAACTTTGGA	0.373													39	56					0	0	0.005524	0	0
OR4C15	81309	broad.mit.edu	37	11	55321908	55321908	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:55321908G>A	uc010rig.1	+	1	126	c.126G>A	c.(124-126)ATG>ATA	p.M42I		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	Error:Variant_position_missing_in_Q8NGM1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GACTATACATGATCCCTGTTG	0.373										HNSCC(20;0.049)			45	74					0	0	0.003610	0	0
PLCB3	5331	broad.mit.edu	37	11	64026164	64026164	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:64026164C>T	uc001nzb.2	+	11	1232	c.1232C>T	c.(1231-1233)TCC>TTC	p.S411F	PLCB3_uc009ypg.1_Missense_Mutation_p.S411F|PLCB3_uc009yph.1_Missense_Mutation_p.S344F|PLCB3_uc009ypi.2_Missense_Mutation_p.S411F	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	411	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						GTCATCCTCTCCTTCGAGAAC	0.612													34	48					0	0	0.003755	0	0
MTNR1B	4544	broad.mit.edu	37	11	92715029	92715029	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:92715029G>A	uc001pdk.1	+	2	743	c.640G>A	c.(640-642)GCT>ACT	p.A214T		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	214	Helical; Name=5; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	CCTCCCTATCGCTGTCGTGTC	0.612													111	133					0	0	0.003610	0	0
TBCEL	219899	broad.mit.edu	37	11	120957608	120957608	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:120957608C>T	uc009zay.2	+	8	1156	c.1078C>T	c.(1078-1080)CGT>TGT	p.R360C	TBCEL_uc001pxo.2_Missense_Mutation_p.R360C|TBCEL_uc001pxp.2_Missense_Mutation_p.R216C|TBCEL_uc001pxq.2_RNA	NM_001130047	NP_001123519	Q5QJ74	TBCEL_HUMAN	tubulin folding cofactor E-like	360	Ubiquitin-like.|Potential.					cytoplasm|cytoskeleton				skin(1)	1		Breast(109;0.00526)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.89e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.121)		AATGAGCATTCGTCTGGACCA	0.433													9	19					0	0	0.006214	0	0
OR8D4	338662	broad.mit.edu	37	11	123777609	123777609	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr11:123777609G>A	uc010saa.1	+	1	471	c.471G>A	c.(469-471)GTG>GTA	p.V157V		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		CTGATGCTGTGATCCATGGAG	0.468													61	89					0	0	0.003610	0	0
CACNA1C	775	broad.mit.edu	37	12	2224481	2224481	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:2224481G>A	uc009zdu.1	+	2	454	c.141G>A	c.(139-141)GGG>GGA	p.G47G	CACNA1C_uc009zdv.1_Silent_p.G47G|CACNA1C_uc001qkb.2_Silent_p.G47G|CACNA1C_uc001qkc.2_Silent_p.G47G|CACNA1C_uc001qke.2_Silent_p.G47G|CACNA1C_uc001qkf.2_Silent_p.G47G|CACNA1C_uc001qjz.2_Silent_p.G47G|CACNA1C_uc001qkd.2_Silent_p.G47G|CACNA1C_uc001qkg.2_Silent_p.G47G|CACNA1C_uc009zdw.1_Silent_p.G47G|CACNA1C_uc001qkh.2_Silent_p.G47G|CACNA1C_uc001qkl.2_Silent_p.G47G|CACNA1C_uc001qkn.2_Silent_p.G47G|CACNA1C_uc001qko.2_Silent_p.G47G|CACNA1C_uc001qkp.2_Silent_p.G47G|CACNA1C_uc001qkr.2_Silent_p.G47G|CACNA1C_uc001qku.2_Silent_p.G47G|CACNA1C_uc001qkq.2_Silent_p.G47G|CACNA1C_uc001qks.2_Silent_p.G47G|CACNA1C_uc001qkt.2_Silent_p.G47G	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	47	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CCACCCCGGGGGCTGCCCTGT	0.677													5	6					0	0	0.000602	0	0
FAM90A1	55138	broad.mit.edu	37	12	8374929	8374929	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:8374929G>A	uc001qui.2	-	7	1443	c.884C>T	c.(883-885)CCG>CTG	p.P295L	FAM90A1_uc001quh.2_Missense_Mutation_p.P295L	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	295							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		AATCGGAGCCGGGGCAGATCT	0.652													22	72					0	0	0.002299	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43846162	43846162	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:43846162T>C	uc010skx.1	-	14	1994	c.1994A>G	c.(1993-1995)TAT>TGT	p.Y665C		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	665	Cys-rich.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TAGGTAGAAATAATTGGTTCC	0.338													22	34					0	0	0.012319	0	0
MLL2	8085	broad.mit.edu	37	12	49427579	49427580	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:49427579_49427580GG>AA	uc001rta.3	-	39	10908_10909	c.10908_10909CC>TT	c.(10906-10911)CTCCCT>CTTTCT	p.P3637S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	3637	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CCATGGCCAGGGAGCAGCTGAC	0.579			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			6	16					0	0	0.004672	0	0
XPOT	11260	broad.mit.edu	37	12	64828325	64828325	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:64828325C>T	uc001ssb.2	+	20	2917	c.2491C>T	c.(2491-2493)CAA>TAA	p.Q831*		NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	831	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		TACTGTTATCCAAGGAGCAGT	0.353													15	43					0	0	0.002450	0	0
PTPRB	5787	broad.mit.edu	37	12	70954554	70954554	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:70954554C>T	uc001swb.3	-	15	3705	c.3675G>A	c.(3673-3675)ACG>ACA	p.T1225T	PTPRB_uc010sto.1_Silent_p.T1135T|PTPRB_uc010stp.1_Silent_p.T1135T|PTPRB_uc001swc.3_Silent_p.T1443T|PTPRB_uc001swa.3_Silent_p.T1355T|PTPRB_uc001swd.3_Silent_p.T1442T|PTPRB_uc009zrr.1_Silent_p.T1322T	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1225	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ACCGCCACTCCGTCAGGTCCT	0.488													11	30					0	0	0.001368	0	0
TPH2	121278	broad.mit.edu	37	12	72425076	72425076	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:72425076C>T	uc009zrw.1	+	10	1344	c.1203C>T	c.(1201-1203)GAC>GAT	p.D401D	TPH2_uc001swy.2_Silent_p.D311D	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	401					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	AAGCCTTTGACCCAAAGACAA	0.418													37	53					0	0	0.004878	0	0
NAA25	80018	broad.mit.edu	37	12	112492209	112492209	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:112492209G>A	uc001ttm.2	-	14	1631	c.1611C>T	c.(1609-1611)ATC>ATT	p.I537I	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Silent_p.I509I|NAA25_uc009zwa.1_Silent_p.I537I	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	537						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						TATCATGCTGGATATGCTTAG	0.433													17	42					0	0	0.004007	0	0
GCN1L1	10985	broad.mit.edu	37	12	120575810	120575810	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:120575810G>A	uc001txo.2	-	48	6301	c.6288C>T	c.(6286-6288)TTC>TTT	p.F2096F		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2096					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGACGAAAGGAAAGCCAGCA	0.448													6	20					0	0	0.001168	0	0
DNAH10	196385	broad.mit.edu	37	12	124414959	124414959	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr12:124414959G>A	uc001uft.3	+	72	12294	c.12269G>A	c.(12268-12270)GGA>GAA	p.G4090E	DNAH10_uc001ufu.3_Missense_Mutation_p.G3E	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	4090	TPR 5.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GTCATGTATGGAGGACGGGCC	0.567													5	13					0	0	0.001168	0	0
RNF17	56163	broad.mit.edu	37	13	25349022	25349022	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr13:25349022G>A	uc001upr.2	+	3	338	c.297G>A	c.(295-297)ATG>ATA	p.M99I	RNF17_uc010tdd.1_Intron|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.M99I|RNF17_uc001ups.2_Missense_Mutation_p.M38I|RNF17_uc001upq.1_Missense_Mutation_p.M99I	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	99					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ACTCCATAATGGAAAAACTGC	0.323													10	20					0	0	0.006214	0	0
KATNAL1	84056	broad.mit.edu	37	13	30805462	30805462	+	Silent	SNP	A	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr13:30805462A>G	uc001uss.2	-	7	975	c.874T>C	c.(874-876)TTG>CTG	p.L292L	KATNAL1_uc001ust.2_Silent_p.L292L	NM_001014380	NP_001014402	Q9BW62	KATL1_HUMAN	katanin p60 subunit A-like 1	292						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity				0		Lung SC(185;0.0257)		all cancers(112;0.114)|OV - Ovarian serous cystadenocarcinoma(117;0.213)		ATCTCAAACAACAGACGAACT	0.398													27	48					0	0	0.005443	0	0
ATP7B	540	broad.mit.edu	37	13	52549113	52549113	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr13:52549113G>A	uc001vfw.2	-	2	400	c.243C>T	c.(241-243)TCC>TCT	p.S81S	ATP7B_uc010adv.2_Silent_p.S81S|ATP7B_uc001vfx.2_Silent_p.S81S|ATP7B_uc001vfy.2_Silent_p.S81S|ATP7B_uc010tgt.1_Silent_p.S81S|ATP7B_uc010tgu.1_Silent_p.S81S|ATP7B_uc010tgv.1_Silent_p.S81S|ATP7B_uc010tgw.1_Silent_p.S49S	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	81	HMA 1.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CTTTCAAATTGGAAATCCTGT	0.517									Wilson_disease				34	58					0	0	0.002836	0	0
IPO5	3843	broad.mit.edu	37	13	98666328	98666328	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr13:98666328C>T	uc001vne.2	+	22	2419	c.2239C>T	c.(2239-2241)CTT>TTT	p.L747F		NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	729					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						ATCCATGCCTCTTCTCCTGGA	0.433													43	76					0	0	0.013114	0	0
FARP1	10160	broad.mit.edu	37	13	99092480	99092481	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr13:99092480_99092481CC>TT	uc001vnj.2	+	23	2956_2957	c.2620_2621CC>TT	c.(2620-2622)CCT>TTT	p.P874F	FARP1_uc001vnh.2_Missense_Mutation_p.P905F	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	874					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CAGCAGCCCCCCTGACAACAGT	0.609													44	61					0	0	0.004672	0	0
TRIM9	114088	broad.mit.edu	37	14	51464813	51464813	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr14:51464813C>T	uc001wyx.3	-	7	2323	c.1558G>A	c.(1558-1560)GGA>AGA	p.G520R	TRIM9_uc001wyy.2_Missense_Mutation_p.G516R|TRIM9_uc001wyz.3_Missense_Mutation_p.G520R	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	520	Fibronectin type-III.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					GGGCTGACTCCTGTTTTGTTG	0.537													20	21					0	0	0.008871	0	0
DACT1	51339	broad.mit.edu	37	14	59113545	59113545	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr14:59113545A>G	uc001xdw.2	+	4	2368	c.2204A>G	c.(2203-2205)CAC>CGC	p.H735R	DACT1_uc010trv.1_Missense_Mutation_p.H454R|DACT1_uc001xdx.2_Missense_Mutation_p.H698R|DACT1_uc010trw.1_Missense_Mutation_p.H454R	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	735					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						TCCCTGTTCCACTCCACCGTG	0.652													30	76					0	0	0.012213	0	0
FBLN5	10516	broad.mit.edu	37	14	92357594	92357594	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr14:92357594G>A	uc001xzx.3	-	6	1063	c.590C>T	c.(589-591)ACC>ATC	p.T197I	FBLN5_uc010aud.2_Missense_Mutation_p.T202I|FBLN5_uc010aue.2_Missense_Mutation_p.T238I	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	197	EGF-like 3; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				CTCATTGAGGGTAAAACCAGG	0.478													19	31					0	0	0.007413	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103470286	103470286	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr14:103470286G>A	uc001ymi.1	-	4	658	c.426C>T	c.(424-426)GCC>GCT	p.A142A		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	142	Protein kinase.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CGTCCTGAAAGGCGTAGTGCA	0.572													14	8					0	0	0.004007	0	0
C14orf73	91828	broad.mit.edu	37	14	103566849	103566849	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr14:103566849G>A	uc001ymk.2	+	1	369	c.293G>A	c.(292-294)GGC>GAC	p.G98D		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	98											0		Melanoma(154;0.155)	Epithelial(46;0.221)			CCAGCTACCGGCCATTCCCAG	0.632													3	28					0	0	0.009096	0	0
ADAM6	8755	broad.mit.edu	37	14	106173831	106173831	+	RNA	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr14:106173831C>T	uc010tyt.1	-	3633		c.60067G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						GTCAGCGTCACCAGCTCGTTC	0.672													4	54					0	0	0.000602	0	0
CXADRP2	646243	broad.mit.edu	37	15	22016432	22016432	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:22016432C>T	uc010tzk.1	-	1	447	c.285G>A	c.(283-285)GTG>GTA	p.V95V		NR_024387				RecName: Full=Coxsackievirus and adenovirus receptor; AltName: Full=Coxsackievirus B-adenovirus receptor; AltName: Full=HCVADR;          Short=hCAR; AltName: Full=CVB3-binding protein; Flags: Precursor;												0						GAGCTCTTTTCACTTTGCACT	0.393													10	45					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	15	22473188	22473188	+	RNA	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:22473188G>A	uc001yuj.1	-	2		c.83C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		CACCAGTCCTGGGCCCGACTC	0.622													30	108					0	0	0.010818	0	0
HERC2	8924	broad.mit.edu	37	15	28519439	28519439	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:28519439C>T	uc001zbj.2	-	7	904	c.798G>A	c.(796-798)ACG>ACA	p.T266T	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	266					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GAACTCACCCCGTCACGACGG	0.577													9	16					0	0	0.006214	0	0
DUOX2	50506	broad.mit.edu	37	15	45388058	45388058	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:45388058G>A	uc010bea.2	-	30	4251	c.4048C>T	c.(4048-4050)CCA>TCA	p.P1350S	DUOX2_uc001zun.2_Missense_Mutation_p.P1350S	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1350	Cytoplasmic (Potential).|FAD-binding FR-type.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TTGCCCTTTGGGGATGAGTAG	0.632													15	35					0	0	0.002450	0	0
TLN2	83660	broad.mit.edu	37	15	62967500	62967500	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:62967500G>A	uc002alb.3	+	8	937	c.937G>A	c.(937-939)GTG>ATG	p.V313M		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	313	FERM.|Interaction with PIP5K1C (By similarity).				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						CACATATGGCGTGTCCTTCTT	0.502													23	50					0	0	0.005443	0	0
DAPK2	23604	broad.mit.edu	37	15	64275881	64275881	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:64275881C>T	uc002amr.2	-	3	196	c.165G>A	c.(163-165)AAG>AAA	p.K55K	DAPK2_uc010uim.1_RNA|DAPK2_uc010bgu.1_Silent_p.K45K	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	55	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		TCTGCCGCTTCTTGATGAACT	0.617													11	27					0	0	0.002450	0	0
TBC1D21	161514	broad.mit.edu	37	15	74180077	74180077	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:74180077G>A	uc002avz.2	+	9	977	c.894G>A	c.(892-894)CTG>CTA	p.L298L	TBC1D21_uc010ulc.1_Silent_p.L262L	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	298						intracellular	Rab GTPase activator activity			ovary(2)	2						ACATCCTCCTGGTGAGAGCAC	0.652													22	45					0	0	0.002299	0	0
SYNM	23336	broad.mit.edu	37	15	99669736	99669736	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:99669736G>A	uc002bup.2	+	6	1291	c.1171G>A	c.(1171-1173)GGA>AGA	p.G391R	SYNM_uc002buo.2_Missense_Mutation_p.G391R|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	391	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						CACATCTATTGGAGGTGATGC	0.507													84	153					0	0	0.003610	0	0
LRRC28	123355	broad.mit.edu	37	15	99874192	99874192	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:99874192C>T	uc002bva.1	+	6	605	c.450C>T	c.(448-450)CCC>CCT	p.P150P	LRRC28_uc010urs.1_Intron|LRRC28_uc002bvb.1_5'UTR|LRRC28_uc010urt.1_Intron|LRRC28_uc002bvc.1_Silent_p.P150P|LRRC28_uc010uru.1_Intron|LRRC28_uc002bvd.1_Intron	NM_144598	NP_653199	Q86X40	LRC28_HUMAN	leucine rich repeat containing 28	150	LRR 6.										0	Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00106)			TAACTTTACCCGAGAGGCTTC	0.478													29	48					0	0	0.006320	0	0
CHSY1	22856	broad.mit.edu	37	15	101718622	101718622	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr15:101718622C>T	uc002bwt.1	-	4	1863	c.1380G>A	c.(1378-1380)GGG>GGA	p.G460G	CHSY1_uc010usd.1_Silent_p.G188G	NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	460	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TCATTTTCTTCCCTTTGTGCT	0.507													14	28					0	0	0.001855	0	0
MEFV	4210	broad.mit.edu	37	16	3299632	3299632	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:3299632G>A	uc002cun.1	-	3	1099	c.1059C>T	c.(1057-1059)CCC>CCT	p.P353P		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	353					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CCTGGCACCGGGGGCAGCCAG	0.647													11	29					0	0	0.008291	0	0
NMRAL1	57407	broad.mit.edu	37	16	4511823	4511823	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:4511823G>A	uc002cwm.2	-	6	1014	c.858C>T	c.(856-858)GAC>GAT	p.D286D	NMRAL1_uc002cwn.2_Silent_p.D286D|NMRAL1_uc002cwo.2_Silent_p.D286D|NMRAL1_uc002cwp.2_Silent_p.D322D	NM_020677	NP_065728	Q9HBL8	NMRL1_HUMAN	NmrA-like family domain containing 1	286						nucleus|perinuclear region of cytoplasm	binding			kidney(1)	1						CCAGCCACTGGTCCAGCGTCA	0.647													58	102					0	0	0.003610	0	0
GRIN2A	2903	broad.mit.edu	37	16	9862775	9862775	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:9862775C>T	uc002czo.3	-	12	3076	c.2528G>A	c.(2527-2529)TGG>TAG	p.W843*	GRIN2A_uc010uym.1_Nonsense_Mutation_p.W843*|GRIN2A_uc010uyn.1_Nonsense_Mutation_p.W686*|GRIN2A_uc002czr.3_Nonsense_Mutation_p.W843*	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	843	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCGCAGCTTCCAGTAGAAGAG	0.582													26	50					0	0	0.004656	0	0
GRIN2A	2903	broad.mit.edu	37	16	10274114	10274114	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:10274114C>T	uc002czo.3	-	2	703	c.155G>A	c.(154-156)CGA>CAA	p.R52Q	GRIN2A_uc010uym.1_Missense_Mutation_p.R52Q|GRIN2A_uc002czr.3_Missense_Mutation_p.R52Q|GRIN2A_uc010buk.2_Missense_Mutation_p.R52Q	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	52	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCACAGTGTTCGAAGTTCGCG	0.682													36	82					0	0	0.008740	0	0
RRN3P3	100131998	broad.mit.edu	37	16	22441236	22441236	+	RNA	SNP	G	A	A	rs114681793	by1000genomes	TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:22441236G>A	uc002dkp.2	-	5		c.1170C>T			RRN3P3_uc010vbu.1_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						TGTTCCTCTCGATGATGGTGT	0.507													4	39					0	0	0.009096	0	0
STX1B	112755	broad.mit.edu	37	16	31012906	31012906	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:31012906C>T	uc010cad.2	-	2	161	c.49G>A	c.(49-51)GAA>AAA	p.E17K	STX1B_uc010vfd.1_Missense_Mutation_p.E17K	NM_052874	NP_443106	P61266	STX1B_HUMAN	syntaxin 1B	17	Cytoplasmic (Potential).			E -> K (in Ref. 1; BAA07152).	intracellular protein transport|neurotransmitter transport|synaptic transmission	integral to plasma membrane	extracellular-glutamate-gated ion channel activity|SNAP receptor activity				0						ACCTCCTCTTCATCATCACTG	0.512													17	25					0	0	0.008871	0	0
ZNF646	9726	broad.mit.edu	37	16	31092343	31092343	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:31092343C>T	uc002eap.2	+	2	4987	c.4698C>T	c.(4696-4698)TTC>TTT	p.F1566F		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1566	C2H2-type 26.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CCAAGGAGTTCTTAAATCCTG	0.542													34	52					0	0	0.003271	0	0
ABCC12	94160	broad.mit.edu	37	16	48125042	48125042	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:48125042C>T	uc002efc.1	-	23	3620	c.3274G>A	c.(3274-3276)GAA>AAA	p.E1092K	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1092						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GAAATGTATTCCCTGAGCAGC	0.498													54	111					0	0	0.003610	0	0
ZNF423	23090	broad.mit.edu	37	16	49669843	49669843	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:49669843G>A	uc002efs.2	-	5	3518	c.3220C>T	c.(3220-3222)CGC>TGC	p.R1074C	ZNF423_uc010vgn.1_Missense_Mutation_p.R957C	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	1074	C2H2-type 25; degenerate.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TGCTTGCTGCGGAACTCCTTG	0.662													8	17					0	0	0.004482	0	0
MT4	84560	broad.mit.edu	37	16	56601683	56601683	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:56601683G>A	uc002eje.1	+	2	132	c.52G>A	c.(52-54)GAC>AAC	p.D18N		NM_032935	NP_116324	P47944	MT4_HUMAN	metallothionein 4	18						cytoplasm	copper ion binding|zinc ion binding			ovary(1)	1						CATGTGTGGAGACAACTGCAA	0.493													22	57					0	0	0.012213	0	0
CCDC135	84229	broad.mit.edu	37	16	57762339	57762339	+	Missense_Mutation	SNP	A	T	T	rs78948416		TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:57762339A>T	uc002emi.2	+	16	2323	c.2234A>T	c.(2233-2235)GAG>GTG	p.E745V	CCDC135_uc002emj.2_Missense_Mutation_p.E745V|CCDC135_uc002emk.2_Missense_Mutation_p.E680V	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	745						cytoplasm				central_nervous_system(1)	1						CGGCAGGTGGAGACCCAGCTG	0.607													31	78					0	0	0.002836	0	0
TK2	7084	broad.mit.edu	37	16	66570869	66570869	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:66570869G>A	uc002eos.2	-	4	634	c.409C>T	c.(409-411)CTG>TTG	p.L137L	TK2_uc010vip.1_5'UTR|TK2_uc002eor.2_Silent_p.L64L|TK2_uc010cdq.2_Silent_p.L64L|TK2_uc010cdr.2_Silent_p.L46L|TK2_uc010viq.1_Intron|TK2_uc010vir.1_Silent_p.L112L	NM_004614	NP_004605	O00142	KITM_HUMAN	thymidine kinase 2, mitochondrial	95					pyrimidine base metabolic process|pyrimidine nucleoside salvage	mitochondrial matrix	ATP binding|phosphotransferase activity, alcohol group as acceptor|thymidine kinase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0736)|Epithelial(162;0.237)		CCACTCACCAGAGGATTGTGG	0.542													36	71					0	0	0.007835	0	0
SMPD3	55512	broad.mit.edu	37	16	68405851	68405851	+	Silent	SNP	C	T	T	rs147838351		TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:68405851C>T	uc002ewa.2	-	3	656	c.234G>A	c.(232-234)GCG>GCA	p.A78A	SMPD3_uc010cfe.2_Silent_p.A78A|SMPD3_uc010vlh.1_Silent_p.A78A	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	78	Helical; (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	AGCCGAGAAACGCAAAGGGCA	0.672													15	34					0	0	0.004007	0	0
KIAA0174	9798	broad.mit.edu	37	16	71950427	71950427	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr16:71950427C>T	uc002fbj.1	+	5	473	c.190C>T	c.(190-192)CGA>TGA	p.R64*	KIAA0174_uc010cgh.1_Nonsense_Mutation_p.R64*|KIAA0174_uc002fbk.1_Nonsense_Mutation_p.R51*|KIAA0174_uc002fbm.1_Nonsense_Mutation_p.R51*|KIAA0174_uc002fbl.1_Nonsense_Mutation_p.R51*|KIAA0174_uc002fbn.1_Intron|KIAA0174_uc010cgi.1_Intron|KIAA0174_uc010cgj.1_Translation_Start_Site|KIAA0174_uc010vmk.1_Intron			P53990	IST1_HUMAN	SubName: Full=cDNA FLJ32696 fis, clone TESTI2000358; SubName: Full=cDNA FLJ77725;	51	Interaction with CHMP1A and CHMP1B.				cell cycle|cell division	cytoplasmic membrane-bounded vesicle|ER-Golgi intermediate compartment	protein binding			ovary(1)	1						GAAAGATGAACGAGCTCGGAT	0.547													14	35					0	0	0.002450	0	0
ALOXE3	59344	broad.mit.edu	37	17	8012520	8012520	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:8012520C>T	uc010cnr.2	-	12	1904	c.1534G>A	c.(1534-1536)GGC>AGC	p.G512S	ALOXE3_uc002gka.2_Missense_Mutation_p.G668S|ALOXE3_uc010vuo.1_Missense_Mutation_p.G644S	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	512	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						ATCTTCAGGCCGTCGTCTCGG	0.667													22	31					0	0	0.002299	0	0
ALDH3A1	218	broad.mit.edu	37	17	19648353	19648353	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:19648353C>T	uc010cqu.2	-	1	420	c.90G>A	c.(88-90)CTG>CTA	p.L30L	ALDH3A1_uc010vzd.1_Silent_p.L30L|ALDH3A1_uc002gwj.2_Silent_p.L30L|ALDH3A1_uc010cqv.2_Silent_p.L30L|ALDH3A1_uc002gwk.2_Intron|ALDH3A1_uc002gwl.1_5'Flank	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	30					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	GCAGCGCCTCCAGCTGCTGGA	0.716													7	14					0	0	0.004482	0	0
KSR1	8844	broad.mit.edu	37	17	25932546	25932546	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:25932546G>A	uc010crg.2	+	15	1801	c.1356G>A	c.(1354-1356)CGG>CGA	p.R452R	KSR1_uc002gzj.1_RNA|KSR1_uc002gzm.2_Silent_p.R231R	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	587					Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		GGCCCTGGCGGGGCCCCATCT	0.662													7	3					0	0	0.001984	0	0
SLFN5	162394	broad.mit.edu	37	17	33586549	33586549	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:33586549C>T	uc002hjf.3	+	2	957	c.840C>T	c.(838-840)TTC>TTT	p.F280F	SLFN5_uc002hje.2_Silent_p.F280F|SLFN5_uc010wcg.1_Silent_p.F280F	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	280					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		TCCTTAACTTCCTTGAAGTGC	0.473													47	98					0	0	0.003610	0	0
MYO19	80179	broad.mit.edu	37	17	34859798	34859798	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:34859798G>A	uc010wcy.1	-	21	2960	c.1968C>T	c.(1966-1968)TTC>TTT	p.F656F	MYO19_uc002hmw.2_Silent_p.F456F|MYO19_uc010cuu.2_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	656	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		ACCGGATGGGGAAGCCAGCAG	0.632													3	8					0	0	0.004672	0	0
PCGF2	7703	broad.mit.edu	37	17	36894641	36894641	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:36894641G>A	uc002hqp.1	-	9	784	c.541C>T	c.(541-543)CTC>TTC	p.L181F	PCGF2_uc002hqn.1_Missense_Mutation_p.S182F|PCGF2_uc002hqo.1_Missense_Mutation_p.S182F|PCGF2_uc010cvo.1_Missense_Mutation_p.L56F|PCGF2_uc002hqq.1_Missense_Mutation_p.S182F	NM_007144	NP_009075	P35227	PCGF2_HUMAN	ring finger protein 110	181					negative regulation of transcription from RNA polymerase II promoter	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2	Breast(7;9.07e-22)					TTGTTGCGGAGAAACTTGGCA	0.572													13	31					0	0	0.003163	0	0
MED24	9862	broad.mit.edu	37	17	38188975	38188975	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:38188975G>C	uc002htt.2	-	9	1176	c.863C>G	c.(862-864)GCT>GGT	p.A288G	MED24_uc010wes.1_Missense_Mutation_p.A148G|MED24_uc010wet.1_Intron|MED24_uc002hts.2_Missense_Mutation_p.A313G|MED24_uc002htu.2_Missense_Mutation_p.A275G|MED24_uc010cwn.2_Missense_Mutation_p.A275G|MED24_uc010weu.1_Missense_Mutation_p.A198G|MED24_uc010wev.1_Missense_Mutation_p.A238G|MED24_uc010wew.1_Missense_Mutation_p.A217G|MED24_uc010wex.1_Intron|MED24_uc010wez.1_Missense_Mutation_p.A129G|MED24_uc010wfa.1_Missense_Mutation_p.A257G|MED24_uc010wfb.1_Missense_Mutation_p.A300G	NM_014815	NP_055630	O75448	MED24_HUMAN	mediator complex subunit 24 isoform 1	288					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1	Colorectal(19;0.000442)					CACGAAGCAAGCTTTCCAGAT	0.577													30	63					0	0	0.003755	0	0
OSBPL7	114881	broad.mit.edu	37	17	45895675	45895675	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:45895675G>A	uc002ilx.1	-	7	761	c.558C>T	c.(556-558)TCC>TCT	p.S186S	OSBPL7_uc002ilw.1_5'Flank	NM_145798	NP_665741	Q9BZF2	OSBL7_HUMAN	oxysterol-binding protein-like protein 7	186					lipid transport		lipid binding				0						CCCTCAGCCAGGAAGACACTT	0.647													32	63					0	0	0.004878	0	0
COL1A1	1277	broad.mit.edu	37	17	48267704	48267704	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:48267704C>T	uc002iqm.2	-	35	2561	c.2435G>A	c.(2434-2436)GGC>GAC	p.G812D		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	812	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GCCAGCAAAGCCAGCAGGGCC	0.612			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						23	37					0	0	0.004656	0	0
CA10	56934	broad.mit.edu	37	17	50008478	50008478	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:50008478C>T	uc002itw.3	-	3	1137	c.151G>A	c.(151-153)GGA>AGA	p.G51R	CA10_uc002itv.3_Missense_Mutation_p.G57R|CA10_uc002itx.3_Missense_Mutation_p.G51R|CA10_uc002ity.3_Missense_Mutation_p.G51R|CA10_uc002itz.2_Missense_Mutation_p.G51R	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	51					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			TTCACCAATCCCCAGAAAGAA	0.438													40	80					0	0	0.006999	0	0
ACE	1636	broad.mit.edu	37	17	61566100	61566100	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr17:61566100C>T	uc002jau.1	+	16	2419	c.2397C>T	c.(2395-2397)CTC>CTT	p.L799L	ACE_uc002jav.1_Silent_p.L225L|ACE_uc010ddv.1_Silent_p.L26L|ACE_uc010wpj.1_Silent_p.L225L|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Silent_p.L109L	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	799	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GAGCCATCCTCCAGTTTTACC	0.557													35	63					0	0	0.004878	0	0
DSG2	1829	broad.mit.edu	37	18	29102174	29102174	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr18:29102174G>A	uc002kwu.3	+	6	840	c.652G>A	c.(652-654)GGA>AGA	p.G218R		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	218	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TAAAGATACAGGAGAGATTTA	0.393													19	32					0	0	0.010504	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559405	44559405	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr18:44559405C>T	uc002lcr.1	-	1	2584	c.2231G>A	c.(2230-2232)CGA>CAA	p.R744Q	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron|TCEB3C_uc010xdb.1_5'Flank	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	744					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTTGTAGTCTCGAATTGCCTT	0.557													51	106					0	0	0.003610	0	0
ALPK2	115701	broad.mit.edu	37	18	56246229	56246229	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr18:56246229C>T	uc002lhj.3	-	4	1993	c.1779G>A	c.(1777-1779)CGG>CGA	p.R593R		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	593							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CATGGGAACTCCGACCAGTCG	0.493											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	55					0	0	0.003954	0	0
CDH20	28316	broad.mit.edu	37	18	59174649	59174649	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr18:59174649C>T	uc010dps.1	+	5	885	c.873C>T	c.(871-873)TCC>TCT	p.S291S	CDH20_uc002lif.2_Silent_p.S285S	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	291	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CAATTAGCTCCACTGTCGGGA	0.428													17	84					0	0	0.006122	0	0
CCDC102B	79839	broad.mit.edu	37	18	66564501	66564501	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr18:66564501G>A	uc002lkk.2	+	8	1322	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	CCDC102B_uc002lki.2_Missense_Mutation_p.E367K|CCDC102B_uc002lkj.1_Missense_Mutation_p.E367K	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	367	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				GGACAAGAGGGAAATACTTGA	0.403													32	67					0	0	0.003755	0	0
NFIC	4782	broad.mit.edu	37	19	3452490	3452490	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:3452490G>A	uc010xhi.1	+	8	1157	c.1095G>A	c.(1093-1095)CGG>CGA	p.R365R	NFIC_uc002lxo.2_Silent_p.R356R|NFIC_uc010xhh.1_Silent_p.R356R|NFIC_uc002lxp.2_Silent_p.R365R|NFIC_uc010xhj.1_Silent_p.R365R	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2	365					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		GGATCGCCCGGAGCCCACACC	0.647													81	248					0	0	0.003610	0	0
TJP3	27134	broad.mit.edu	37	19	3736223	3736223	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:3736223G>A	uc010xhv.1	+	10	1287	c.1287G>A	c.(1285-1287)CTG>CTA	p.L429L	TJP3_uc010xhs.1_Silent_p.L396L|TJP3_uc010xht.1_Silent_p.L360L|TJP3_uc010xhu.1_Silent_p.L405L|TJP3_uc010xhw.1_Silent_p.L415L	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	410	PDZ 3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCTGCGGCTGGCAGGGGGCA	0.677													29	32					0	0	0.008361	0	0
FBN3	84467	broad.mit.edu	37	19	8190879	8190879	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:8190879G>A	uc002mjf.2	-	21	2649	c.2628C>T	c.(2626-2628)TTC>TTT	p.F876F		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	876	EGF-like 11; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGACTCCCGGGAAGGACTCAC	0.637													19	41					0	0	0.010504	0	0
FBN3	84467	broad.mit.edu	37	19	8194032	8194032	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:8194032C>T	uc002mjf.2	-	17	2197	c.2176G>A	c.(2176-2178)GAT>AAT	p.D726N		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	726	EGF-like 9; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCACACTCATCCACGTCTGTG	0.652													45	85					0	0	0.003610	0	0
PRAM1	84106	broad.mit.edu	37	19	8564455	8564455	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:8564455G>A	uc002mkd.2	-	2	257	c.237C>T	c.(235-237)CTC>CTT	p.L79L	PRAM1_uc002mkc.2_Silent_p.L79L	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	127	5.|Pro-rich.|8 X 12 AA repeats of K-P-P-[PQ]-P-[EQ]- [VAF]-T-D-L-P-K.						lipid binding|protein binding				0						GCTTCTTGGGGAGGTCAGTGA	0.667													9	154					0	0	0.007835	0	0
ACTL9	284382	broad.mit.edu	37	19	8808458	8808458	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:8808458C>T	uc002mkl.2	-	1	715	c.594G>A	c.(592-594)ACG>ACA	p.T198T		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	198						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CCCCGTGTCCCGTGTCCACCA	0.667													15	26					0	0	0.004990	0	0
MUC16	94025	broad.mit.edu	37	19	8969339	8969339	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:8969339G>A	uc002mkp.2	-	79	43209	c.43005C>T	c.(43003-43005)TCC>TCT	p.S14335S	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.S1135S|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTTGTCCTGGGAATATGGTA	0.473													43	56					0	0	0.009718	0	0
MUC16	94025	broad.mit.edu	37	19	9019291	9019291	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:9019291G>A	uc002mkp.2	-	23	37800	c.37596C>T	c.(37594-37596)TCC>TCT	p.S12532S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12534	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCTTGGGAGGGAGAATGGAG	0.458													6	20					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9048053	9048053	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:9048053G>A	uc002mkp.2	-	5	33782	c.33578C>T	c.(33577-33579)TCA>TTA	p.S11193L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11195	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAATGGCTGAAATCATCTT	0.448													11	11					0	0	0.001368	0	0
MUC16	94025	broad.mit.edu	37	19	9070674	9070674	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:9070674C>T	uc002mkp.2	-	3	16976	c.16772G>A	c.(16771-16773)GGA>GAA	p.G5591E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5593	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGAGTCCCTCCCTGGAAAAG	0.512													62	78					0	0	0.003610	0	0
SMARCA4	6597	broad.mit.edu	37	19	11145739	11145739	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:11145739C>T	uc002mqf.3	+	29	4385	c.4101C>T	c.(4099-4101)TTC>TTT	p.F1367F	SMARCA4_uc010dxp.2_Silent_p.F1367F|SMARCA4_uc010dxo.2_Silent_p.F1367F|SMARCA4_uc010dxq.2_Silent_p.F1334F|SMARCA4_uc010dxr.2_Silent_p.F1334F|SMARCA4_uc002mqj.3_Silent_p.F1334F|SMARCA4_uc010dxs.2_Silent_p.F1334F|SMARCA4_uc010dxt.1_Silent_p.F554F|SMARCA4_uc002mqh.3_Silent_p.F457F|SMARCA4_uc002mqi.1_Silent_p.F537F	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1367					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				AGAAGATGTTCGGCCGTGGCT	0.647			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				6	16					0	0	0.003080	0	0
NWD1	284434	broad.mit.edu	37	19	16902356	16902356	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:16902356G>A	uc002neu.3	+	14	3558	c.3136G>A	c.(3136-3138)GAA>AAA	p.E1046K	NWD1_uc002net.3_Missense_Mutation_p.E911K|NWD1_uc002nev.3_Missense_Mutation_p.E840K			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1046	WD 6.						ATP binding	p.G1046R(1)		skin(3)|ovary(2)|pancreas(2)	7						CATCAAAGAAGAAACACCTAC	0.502													32	44					0	0	0.002836	0	0
MYO9B	4650	broad.mit.edu	37	19	17306052	17306052	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:17306052C>T	uc010eak.2	+	22	3968	c.3816C>T	c.(3814-3816)CCC>CCT	p.P1272P	MYO9B_uc002nfi.2_Silent_p.P1272P|MYO9B_uc002nfj.1_Silent_p.P1272P|MYO9B_uc002nfl.1_5'Flank	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1272	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						CCGAGACCCCCGAGGACAAGA	0.711													14	34					0	0	0.003163	0	0
LRRC25	126364	broad.mit.edu	37	19	18502870	18502870	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:18502870G>A	uc002niw.2	-	2	1487	c.845C>T	c.(844-846)CCT>CTT	p.P282L	LRRC25_uc002nix.2_Missense_Mutation_p.P282L	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	282	Cytoplasmic (Potential).					integral to membrane					0						ACAGTAGACAGGCTGGGAAGC	0.562													28	43					0	0	0.007291	0	0
NCAN	1463	broad.mit.edu	37	19	19337555	19337555	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:19337555G>A	uc002nlz.2	+	7	1432	c.1333G>A	c.(1333-1335)GAA>AAA	p.E445K	NCAN_uc010ecc.1_Missense_Mutation_p.E9K	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	445					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GCCCACTGGGGAAGTGTGGCT	0.617													14	14					0	0	0.003163	0	0
ZNF676	163223	broad.mit.edu	37	19	22363885	22363885	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:22363885G>A	uc002nqs.1	-	3	952	c.634C>T	c.(634-636)CTT>TTT	p.L212F		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	212	C2H2-type 2.			KFSILTKHKVIHT -> WSSSLTEHKRIHA (in Ref. 2; BAC05174).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TGTTTAGTAAGGATTGAGAAC	0.353													14	28					0	0	0.001855	0	0
ZNF681	148213	broad.mit.edu	37	19	23937634	23937634	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:23937634C>T	uc002nrk.3	-	3	359	c.217G>A	c.(217-219)GAA>AAA	p.E73K	ZNF681_uc002nrl.3_Missense_Mutation_p.E4K|ZNF681_uc002nrj.3_Missense_Mutation_p.E4K|ZNF681_uc002nrm.1_RNA	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	73	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CCTGGGGGTTCGGCCACCATC	0.418													24	32					0	0	0.003954	0	0
CD22	933	broad.mit.edu	37	19	35837499	35837499	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:35837499C>T	uc010edt.2	+	14	2520	c.2443C>T	c.(2443-2445)CCA>TCA	p.P815S	CD22_uc010xst.1_Missense_Mutation_p.P643S|CD22_uc010edu.2_Missense_Mutation_p.P727S|CD22_uc010edv.2_3'UTR|CD22_uc002nzb.3_Missense_Mutation_p.P638S|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	815	Cytoplasmic (Potential).				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	TCCAGATTTTCCAGAAGATGA	0.532													6	9					0	0	0.001984	0	0
SPTBN4	57731	broad.mit.edu	37	19	41021331	41021331	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:41021331C>T	uc002ony.2	+	15	2965	c.2879C>T	c.(2878-2880)TCC>TTC	p.S960F	SPTBN4_uc002onx.2_Missense_Mutation_p.S960F|SPTBN4_uc002onz.2_Missense_Mutation_p.S960F|SPTBN4_uc010egx.2_5'UTR	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	960	Spectrin 7.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GAGGTGCGTTCCTGCCAGGAC	0.607													8	8					0	0	0.003080	0	0
CYP2F1	1572	broad.mit.edu	37	19	41622409	41622410	+	Missense_Mutation	DNP	GG	AA	AA	rs145103345	byFrequency	TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:41622409_41622410GG>AA	uc002opu.1	+	3	277_278	c.221_222GG>AA	c.(220-222)CGG>CAA	p.R74Q	CYP2F1_uc010xvw.1_5'UTR|CYP2F1_uc010xvv.1_Missense_Mutation_p.R74Q|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	74					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						GGACCCAGGCGGGTGGTGGTCC	0.599													45	94					0	0	0.004672	0	0
PSG7	5676	broad.mit.edu	37	19	43439566	43439566	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:43439566G>A	uc002ovl.3	-	3	522	c.420C>T	c.(418-420)TTC>TTT	p.F140F	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	140	Ig-like V-type.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGTATAAGGTGAAGGTGAAAC	0.512													97	309					0	0	0.003610	0	0
PSG7	5676	broad.mit.edu	37	19	43439606	43439606	+	Missense_Mutation	SNP	C	T	T	rs146684607	by1000genomes	TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:43439606C>T	uc002ovl.3	-	3	482	c.380G>A	c.(379-381)CGA>CAA	p.R127Q	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	127	Cell attachment site (Potential).|Ig-like V-type.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CCCATCACCTCGCTTTATGAT	0.493													107	358					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43762547	43762547	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:43762547G>A	uc002owd.3	-	5	1149	c.1050C>T	c.(1048-1050)CTC>CTT	p.L350L	PSG9_uc002owe.3_Silent_p.L257L|PSG9_uc010xwm.1_Silent_p.L257L|PSG9_uc002owf.3_Silent_p.L164L|PSG9_uc002owg.2_Silent_p.L257L|PSG9_uc002owh.2_Silent_p.L164L	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	350	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGGACAAGTCGAGGTTTTCTC	0.453													83	137					0	0	0.003610	0	0
TEX101	83639	broad.mit.edu	37	19	43922358	43922358	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:43922358G>A	uc010xwo.1	+	6	754	c.559G>A	c.(559-561)GCC>ACC	p.A187T	TEX101_uc002owk.2_Missense_Mutation_p.A205T	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	187						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				AGGCTGTACAGCCATGATTGG	0.507													30	66					0	0	0.009535	0	0
PNKP	11284	broad.mit.edu	37	19	50370414	50370414	+	Silent	SNP	A	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:50370414A>G	uc002pqh.2	-	1	100	c.48T>C	c.(46-48)CCT>CCC	p.P16P	PNKP_uc002pqg.2_5'Flank|PNKP_uc002pqi.2_5'UTR|PNKP_uc002pqj.2_Silent_p.P16P|PNKP_uc010enm.2_Silent_p.P16P|PNKP_uc002pqk.2_Silent_p.P16P	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	16					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		GCGCTCCCCCAGGGGGGCTCT	0.721								Other_BER_factors					9	28					0	0	0.008291	0	0
SHANK1	50944	broad.mit.edu	37	19	51201136	51201136	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:51201136C>T	uc002psx.1	-	12	1844	c.1825G>A	c.(1825-1827)GAA>AAA	p.E609K		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	609	SH3.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GCCACTTCTTCCAGGCAGTCA	0.567													12	23					0	0	0.002450	0	0
ZNF613	79898	broad.mit.edu	37	19	52447376	52447376	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:52447376C>T	uc002pxz.1	+	6	663	c.240C>T	c.(238-240)ATC>ATT	p.I80I	ZNF613_uc002pya.1_Silent_p.I44I	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	80					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		TCCTAGAAATCAAGAAAGTTG	0.368													4	10					0	0	0.009096	0	0
NLRP4	147945	broad.mit.edu	37	19	56373464	56373464	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:56373464G>A	uc002qmd.3	+	5	2547	c.2125G>A	c.(2125-2127)GAT>AAT	p.D709N	NLRP4_uc002qmf.2_Missense_Mutation_p.D634N|NLRP4_uc010etf.2_Missense_Mutation_p.D540N	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	709	LRR 2.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ACTCTCTCGTGATGACATCAG	0.478													85	45					0	0	0.003610	0	0
NLRP13	126204	broad.mit.edu	37	19	56413429	56413429	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:56413429G>A	uc010ygg.1	-	9	2786	c.2761C>T	c.(2761-2763)CGC>TGC	p.R921C		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	921							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCATCTGGGCGACCCAAGGCC	0.547													19	110					0	0	0.010504	0	0
NLRP13	126204	broad.mit.edu	37	19	56424336	56424336	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr19:56424336C>A	uc010ygg.1	-	5	872	c.847G>T	c.(847-849)GAA>TAA	p.E283*		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	283	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GAAATCAATTCAGCAAAGGTA	0.413													18	104					2.48551e-13	2.59578e-13	0.004990	1	0
APOB	338	broad.mit.edu	37	2	21232960	21232960	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:21232960G>A	uc002red.2	-	26	6908	c.6780C>T	c.(6778-6780)ATC>ATT	p.I2260I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2260					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTTGTATCTGGATTCTGATTT	0.343													224	141					0	0	0.003610	0	0
FAM179A	165186	broad.mit.edu	37	2	29240795	29240795	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:29240795G>A	uc010ezl.2	+	10	1684	c.1333G>A	c.(1333-1335)GAG>AAG	p.E445K	FAM179A_uc010ymm.1_Intron|FAM179A_uc002rmr.3_Intron	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	445							binding			ovary(3)|skin(1)	4						CAGCCGGCAGGAGCCCCGCTT	0.687													12	6					0	0	0.001855	0	0
STRN	6801	broad.mit.edu	37	2	37111155	37111155	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:37111155G>A	uc002rpn.2	-	9	1115	c.1106C>T	c.(1105-1107)TCA>TTA	p.S369L	STRN_uc010ezx.2_Missense_Mutation_p.S332L	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	369					dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				TGGCTGCAATGAAGGAAGTTC	0.433													13	7					0	0	0.001368	0	0
FAM82A1	151393	broad.mit.edu	37	2	38224657	38224657	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:38224657G>A	uc002rql.2	+	8	1167	c.1044G>A	c.(1042-1044)AAG>AAA	p.K348K	FAM82A1_uc002rqn.1_Silent_p.K526K|FAM82A1_uc002rqk.1_Silent_p.K203K|FAM82A1_uc002rqm.2_Silent_p.K203K	NM_144713	NP_653314	Q96LZ7	RMD2_HUMAN	family with sequence similarity 82, member A1	348						cytoplasm|integral to membrane|microtubule|spindle pole	binding			ovary(1)	1						ATTTCCTTAAGGTACATTTTG	0.398													21	11					0	0	0.008871	0	0
FOXN2	3344	broad.mit.edu	37	2	48602501	48602501	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:48602501C>T	uc002rwh.1	+	7	1530	c.1215C>T	c.(1213-1215)CTC>CTT	p.L405L		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	405					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			GATCTCTGCTCCACCTTGCTG	0.403													10	6					0	0	0.008291	0	0
ASTL	431705	broad.mit.edu	37	2	96789678	96789678	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:96789678C>T	uc010yui.1	-	9	1207	c.1207G>A	c.(1207-1209)GGA>AGA	p.G403R		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	403					proteolysis		metalloendopeptidase activity|zinc ion binding				0						GGCTGGATTCCTGCTTCTGAA	0.592													28	31					0	0	0.006320	0	0
CHST10	9486	broad.mit.edu	37	2	101019034	101019034	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:101019034C>G	uc002tam.2	-	4	543	c.184G>C	c.(184-186)GAA>CAA	p.E62Q		NM_004854	NP_004845	O43529	CHSTA_HUMAN	HNK-1 sulfotransferase	62	Lumenal (Potential).				carbohydrate biosynthetic process|cell adhesion	Golgi membrane|integral to membrane|membrane fraction				ovary(1)	1						ACCTTCAGTTCCTCAGGAATG	0.572													35	22					0	0	0.005524	0	0
TTC21B	79809	broad.mit.edu	37	2	166747104	166747104	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:166747104G>A	uc002udk.2	-	24	3281	c.3148C>T	c.(3148-3150)CGG>TGG	p.R1050W	TTC21B_uc002udj.1_RNA	NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	1050	TPR 16.					cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						CGATCTTTCCGAGCTTTATTA	0.338													11	12					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179584144	179584144	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:179584144C>T	uc010zfg.1	-	80	20465	c.20241G>A	c.(20239-20241)CTG>CTA	p.L6747L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L3408L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7674							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCACGTCTTTCAGCTTGCGGA	0.517													37	30					0	0	0.006999	0	0
ALPP	250	broad.mit.edu	37	2	233244902	233244902	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:233244902C>T	uc002vsq.2	+	6	829	c.664C>T	c.(664-666)CTA>TTA	p.L222L	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	222						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		CCAGGTGATCCTAGGTGGAGG	0.622													28	30					0	0	0.010818	0	0
C20orf94	128710	broad.mit.edu	37	20	10603436	10603436	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr20:10603436C>T	uc010zre.1	+	8	816	c.636C>T	c.(634-636)TCC>TCT	p.S212S		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	212							protein binding				0						AGGCTTCCTCCAGTCCCCCAT	0.488													14	49					0	0	0.002450	0	0
GZF1	64412	broad.mit.edu	37	20	23350250	23350250	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr20:23350250G>A	uc010gdb.2	+	6	1831	c.1657G>A	c.(1657-1659)GGC>AGC	p.G553S	GZF1_uc002wsy.2_Missense_Mutation_p.G553S|GZF1_uc010zsq.1_Missense_Mutation_p.G77S|GZF1_uc010zsr.1_Missense_Mutation_p.G62S|GZF1_uc002wsz.2_Missense_Mutation_p.G553S	NM_022482	NP_071927	Q9H116	GZF1_HUMAN	GDNF-inducible zinc finger protein 1	553	C2H2-type 9.				transcription, DNA-dependent	nucleolus|nucleoplasm	sequence-specific DNA binding|zinc ion binding			kidney(1)	1	Lung NSC(19;0.0605)|Colorectal(13;0.0993)|all_lung(19;0.135)					TGACCAGTGCGGCAAGCAGTT	0.597													59	121					0	0	0.003610	0	0
SRC	6714	broad.mit.edu	37	20	36022382	36022382	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr20:36022382C>T	uc002xgx.2	+	6	884	c.435C>T	c.(433-435)TCC>TCT	p.S145S	SRC_uc002xgy.2_Silent_p.S145S	NM_005417	NP_005408	P12931	SRC_HUMAN	proto-oncogene tyrosine-protein kinase SRC	145	SH3.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			large_intestine(10)|lung(1)|central_nervous_system(1)|endometrium(1)	13		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	CCTCCGACTCCATCCAGGCTG	0.642													6	14					0	0	0.003080	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872096	51872096	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr20:51872096C>T	uc002xwo.2	+	2	3055	c.2099C>T	c.(2098-2100)TCC>TTC	p.S700F		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	700					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GCCCTGCAGTCCGTCCTGAAC	0.612													16	31					0	0	0.004007	0	0
TCEA2	6919	broad.mit.edu	37	20	62700770	62700770	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr20:62700770C>T	uc011abs.1	+	5	1042	c.386C>T	c.(385-387)CCT>CTT	p.P129L	TCEA2_uc011abr.1_Missense_Mutation_p.P102L|TCEA2_uc010gkq.2_Missense_Mutation_p.P102L|TCEA2_uc010gks.2_Missense_Mutation_p.P129L|TCEA2_uc010gkt.2_Missense_Mutation_p.P102L|TCEA2_uc010gku.1_Missense_Mutation_p.L73F	NM_003195	NP_003186	Q15560	TCEA2_HUMAN	transcription elongation factor A protein 2	129					regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	transcription elongation factor complex	DNA binding|protein binding|translation elongation factor activity|zinc ion binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					ACCACATTTCCTCCGGTGCCT	0.672													10	6					0	0	0.006214	0	0
TCEA2	6919	broad.mit.edu	37	20	62700772	62700772	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr20:62700772C>T	uc011abs.1	+	5	1044	c.388C>T	c.(388-390)CCG>TCG	p.P130S	TCEA2_uc011abr.1_Missense_Mutation_p.P103S|TCEA2_uc010gkq.2_Missense_Mutation_p.P103S|TCEA2_uc010gks.2_Missense_Mutation_p.P130S|TCEA2_uc010gkt.2_Missense_Mutation_p.P103S|TCEA2_uc010gku.1_Silent_p.L73L	NM_003195	NP_003186	Q15560	TCEA2_HUMAN	transcription elongation factor A protein 2	130					regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	transcription elongation factor complex	DNA binding|protein binding|translation elongation factor activity|zinc ion binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					CACATTTCCTCCGGTGCCTGT	0.672													11	8					0	0	0.010729	0	0
C21orf99	149992	broad.mit.edu	37	21	14439310	14439310	+	RNA	SNP	A	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr21:14439310A>G	uc002yja.3	+	10		c.2828A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						CTCTCCGAATATACAAAATAT	0.289													2	4					0	0	0.004672	0	0
ZNF74	7625	broad.mit.edu	37	22	20759962	20759962	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr22:20759962C>T	uc010gsm.2	+	6	851	c.639C>T	c.(637-639)GCC>GCT	p.A213A	ZNF74_uc002zsg.2_Silent_p.A142A|ZNF74_uc002zsh.2_Silent_p.A213A|ZNF74_uc002zsi.2_Silent_p.A142A|ZNF74_uc010gsn.2_Silent_p.A142A	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	213					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GAACCAAGGCCCCCGCGAGAC	0.557													13	16					0	0	0.001855	0	0
MMP11	4320	broad.mit.edu	37	22	24125674	24125674	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr22:24125674C>T	uc002zxx.2	+	8	1432	c.1410C>T	c.(1408-1410)CCC>CCT	p.P470P	MMP11_uc002zxy.2_RNA|MMP11_uc002zxz.2_RNA	NM_005940	NP_005931	P24347	MMP11_HUMAN	matrix metalloproteinase 11 preproprotein	470	Hemopexin-like 4.				collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|large_intestine(1)	3		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				AAGGCTTCCCCCGTCTCGTGG	0.607													37	80					0	0	0.004878	0	0
GRM7	2917	broad.mit.edu	37	3	7620138	7620138	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:7620138C>T	uc003bqm.2	+	8	1819	c.1545C>T	c.(1543-1545)GTC>GTT	p.V515V	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.V515V|GRM7_uc003bql.2_Silent_p.V515V|GRM7_uc003bqn.1_Silent_p.V98V|GRM7_uc010hch.1_Silent_p.V26V	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	515	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GTAAAGGAGTCCGAGAGATAC	0.463													16	21					0	0	0.004007	0	0
RAF1	5894	broad.mit.edu	37	3	12641889	12641889	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:12641889G>T	uc003bxf.3	-	8	1275	c.860C>A	c.(859-861)TCA>TAA	p.S287*	RAF1_uc011aut.1_Nonsense_Mutation_p.S72*|RAF1_uc011auu.1_Nonsense_Mutation_p.S205*	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	287					activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	AAAAGTACCTGATTCGCTGTG	0.413			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				18	38					1.00905e-13	1.05743e-13	0.008871	1	0
TTC21A	199223	broad.mit.edu	37	3	39151626	39151626	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:39151626C>T	uc003cjc.2	+	3	441	c.264C>T	c.(262-264)ATC>ATT	p.I88I	GORASP1_uc003civ.1_5'Flank|GORASP1_uc003ciw.1_5'Flank|GORASP1_uc003cix.1_5'Flank|GORASP1_uc003ciy.1_5'Flank|GORASP1_uc011ayw.1_5'Flank|GORASP1_uc003ciz.1_5'Flank|TTC21A_uc003cja.2_Silent_p.I88I|TTC21A_uc010hho.1_Intron|TTC21A_uc003cjb.2_Intron|TTC21A_uc003cje.2_Silent_p.I88I|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Silent_p.I88I	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	88							binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		GATGTGAAATCATTGGTGAGT	0.557													19	30					0	0	0.007413	0	0
XIRP1	165904	broad.mit.edu	37	3	39226215	39226215	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:39226215G>A	uc003cjk.1	-	2	4943	c.4722C>T	c.(4720-4722)TTC>TTT	p.F1574F	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Silent_p.F257F	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1574							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GAGGTCCCTGGAAATGGCCTC	0.587													57	85					0	0	0.003610	0	0
CTNNB1	1499	broad.mit.edu	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	G	G	rs121913409		TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:41266137C>G	uc010hia.1	+	4	290	c.134C>G	c.(133-135)TCT>TGT	p.S45C	CTNNB1_uc003ckp.2_Missense_Mutation_p.S45C|CTNNB1_uc003ckq.2_Missense_Mutation_p.S45C|CTNNB1_uc003ckr.2_Missense_Mutation_p.S45C|CTNNB1_uc011azf.1_Missense_Mutation_p.S38C|CTNNB1_uc011azg.1_Intron|uc010hib.1_RNA	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	45			Missing (in colorectal cancer).|S -> P (in hepatocellular carcinoma).|S -> F (in hepatocellular carcinoma).		adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding	p.S45F(396)|p.S45P(163)|p.S45del(79)|p.A5_A80del(63)|p.S45Y(21)|p.S45C(18)|p.S45A(10)|p.H24_S47del(9)|p.A5_Q143del(7)|p.A5_A80>D(7)|p.Q28_H134del(5)|p.W25_I140del(4)|p.V22_L139>V(2)|p.T3_A126del(2)|p.D32_S47del(2)|p.P44_S45del(2)|p.M5_N141>D(2)|p.?(2)|p.L10_N141del(2)|p.A5_Y142>D(2)|p.A5_Q72del(1)|p.A20_Q143del(1)|p.A5_Q143>E(1)|p.A13_R151del(1)|p.H36_E53>L(1)|p.A43_E54del(1)|p.S45_S47>C(1)|p.M14_S45del(1)|p.S45_G48del(1)|p.A5_G80>(1)|p.Q28_Q61del(1)|p.D6_K133del(1)|p.A43_E53del(1)|p.M8_G50del(1)|p.M1_A87del(1)|p.S45_L46del(1)|p.A20_N141del(1)|p.D11_Y142>H(1)|p.A5_D144>D(1)|p.P44_N51del(1)|p.P44_S45>AP(1)|p.V22_G80>NNNNN(1)|p.V22_A80del(1)|p.I35_K170del(1)|p.Y30_A97del(1)|p.T42_G48del(1)|p.S45_D58del(1)|p.V22_T102del(1)|p.A20_A80del(1)|p.V22_S71>A(1)|p.S45fs*2(1)|p.T40_L46del(1)|p.A5_T59del(1)|p.M1_V173del(1)|p.E15_I140>V(1)|p.W25_A80del(1)|p.A5_R90del(1)|p.H24_M131del(1)|p.S45E(1)|p.A20_R151del(1)|p.D17_A126del(1)|p.M8_A80del(1)|p.P44_S45insGATTTAP(1)|p.K19_Y142>V(1)|p.A5_E54del(1)|p.L7_I140del(1)|p.S45T(1)|p.A21_A80del(1)|p.E9_I140del(1)|p.S45S(1)|p.P16_K133del(1)|p.V22_Y64del(1)|p.G38_S45del(1)|p.E9_A80del(1)|p.D6_I140del(1)|p.S23_I140del(1)|p.A20_L148del(1)|p.Q28_I140del(1)|p.S45_E54del(1)|p.A20_Q72del(1)|p.D17_P128del(1)|p.A20_S111del(1)|p.E9_S47del(1)|p.Y30_A80del(1)	CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	ACAGCTCCTTCTCTGAGTGGT	0.498	S45F(HCC15_LUNG)|S45F(LS180_LARGE_INTESTINE)	15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				15	26					0	0	0.002450	0	0
CELSR3	1951	broad.mit.edu	37	3	48677265	48677265	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:48677265G>A	uc003cul.2	-	34	10034	c.9753C>T	c.(9751-9753)GCC>GCT	p.A3251A	CELSR3_uc003cuf.1_Silent_p.A3349A|CELSR3_uc010hkf.2_Silent_p.A541A|CELSR3_uc010hkg.2_Silent_p.A1234A	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	3251	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGTTGAAAGAGGCAAGGATGG	0.607													44	97					0	0	0.007835	0	0
TLR9	54106	broad.mit.edu	37	3	52257979	52257979	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:52257979G>A	uc003dda.1	-	2	987	c.353C>T	c.(352-354)ACC>ATC	p.T118I	TLR9_uc003ddb.2_Missense_Mutation_p.T215I|TLR9_uc003ddc.1_Missense_Mutation_p.T103I	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	118	Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	AGCCAAGAAGGTGCTGGGCTC	0.602													53	90					0	0	0.003610	0	0
DNAH1	25981	broad.mit.edu	37	3	52395225	52395225	+	Silent	SNP	T	C	C			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:52395225T>C	uc011bef.1	+	29	4992	c.4731T>C	c.(4729-4731)GGT>GGC	p.G1577G		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1577	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGTTTGGGGGTGCCCCAGCTG	0.617													8	20					0	0	0.004482	0	0
ERC2	26059	broad.mit.edu	37	3	56173549	56173549	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:56173549G>A	uc003dhr.1	-	6	1717	c.1461C>T	c.(1459-1461)ATC>ATT	p.I487I		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	487	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CAGTCTGAAGGATGGCAGCCC	0.403													14	30					0	0	0.004990	0	0
ARGFX	503582	broad.mit.edu	37	3	121305437	121305437	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:121305437G>A	uc003eef.2	+	5	1033	c.938G>A	c.(937-939)GGA>GAA	p.G313E		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	313						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		GTAGACTTGGGATTTCTCTGA	0.403													19	42					0	0	0.010504	0	0
UROC1	131669	broad.mit.edu	37	3	126224812	126224812	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:126224812G>A	uc003eiz.1	-	7	677	c.645C>T	c.(643-645)CCC>CCT	p.P215P	UROC1_uc010hsi.1_Silent_p.P215P	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	215					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CGATTCCCTGGGGACCGATGT	0.657													28	36					0	0	0.006320	0	0
COL6A6	131873	broad.mit.edu	37	3	130285586	130285586	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:130285586C>T	uc010htl.2	+	4	1354	c.1323C>T	c.(1321-1323)ATC>ATT	p.I441I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	441	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATCTGCTTATCGATGGCTCAG	0.473													17	27					0	0	0.004007	0	0
CPNE4	131034	broad.mit.edu	37	3	131306334	131306334	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:131306334C>T	uc003eok.2	-	8	1209	c.774G>A	c.(772-774)GGG>GGA	p.G258G	CPNE4_uc011blq.1_Silent_p.G276G|CPNE4_uc003eol.2_Silent_p.G276G|CPNE4_uc003eom.2_Silent_p.G258G	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	258										upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GTACCTGTTTCCCTTCCATTG	0.453													16	42					0	0	0.007413	0	0
PIK3CB	5291	broad.mit.edu	37	3	138402568	138402568	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:138402568T>C	uc011bmq.1	-	16	2377	c.2377A>G	c.(2377-2379)AAG>GAG	p.K793E	PIK3CB_uc011bmn.1_Missense_Mutation_p.K305E|PIK3CB_uc011bmo.1_Missense_Mutation_p.K239E|PIK3CB_uc011bmp.1_Missense_Mutation_p.K380E	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	793					activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						CCAAATACCTTGTTATTGTAT	0.328													167	335					0	0	0.003610	0	0
MUC4	4585	broad.mit.edu	37	3	195491985	195491985	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:195491985C>T	uc011bto.1	-	11	13883	c.13423G>A	c.(13423-13425)GGC>AGC	p.G4475S	MUC4_uc003fuz.2_Missense_Mutation_p.G201S|MUC4_uc003fva.2_Missense_Mutation_p.G83S|MUC4_uc003fvb.2_Missense_Mutation_p.G119S|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.G119S|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Missense_Mutation_p.G83S|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.G167S|MUC4_uc011bti.1_Missense_Mutation_p.G167S|MUC4_uc011btj.1_Missense_Mutation_p.G344S|MUC4_uc011btk.1_Missense_Mutation_p.G83S|MUC4_uc011btl.1_Missense_Mutation_p.G112S|MUC4_uc011btm.1_Missense_Mutation_p.G292S|MUC4_uc011btn.1_Missense_Mutation_p.G83S|MUC4_uc003fvo.2_Missense_Mutation_p.G367S|MUC4_uc003fvp.2_Missense_Mutation_p.G316S|MUC4_uc010hzu.1_Missense_Mutation_p.G1215S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1360	AMOP.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CTGCCGAGGCCCCAGCGACCT	0.662													12	12					0	0	0.010729	0	0
GAK	2580	broad.mit.edu	37	4	845554	845554	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:845554G>A	uc003gbm.3	-	25	3691	c.3492C>T	c.(3490-3492)GTC>GTT	p.V1164V	GAK_uc003gbn.3_Silent_p.V1085V|GAK_uc003gbk.3_5'UTR|GAK_uc010ibi.2_Silent_p.V389V|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Silent_p.V1017V	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	1164					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		TGGGTGCGCGGACCCCCCGCT	0.597													28	43					0	0	0.007291	0	0
LOC348926	348926	broad.mit.edu	37	4	3945031	3945031	+	RNA	SNP	A	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:3945031A>G	uc011bvu.1	-	6		c.2051T>C			LOC348926_uc003ghn.2_RNA	NR_024253				Homo sapiens hypothetical protein LOC348926, mRNA (cDNA clone IMAGE:4546485), partial cds.												0						GCCATCTCCAAGTGCTCTTTG	0.483													18	59					0	0	0.008871	0	0
FIP1L1	81608	broad.mit.edu	37	4	54294256	54294256	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:54294256C>T	uc003gzy.2	+	13	1266	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F	PDGFRA_uc003haa.2_Intron|FIP1L1_uc003gzx.3_Silent_p.F345F|FIP1L1_uc011bzt.1_Silent_p.F324F|FIP1L1_uc011bzu.1_Silent_p.F345F|FIP1L1_uc003gzz.2_Silent_p.F286F|FIP1L1_uc003hab.2_Silent_p.F325F|FIP1L1_uc003hac.2_Silent_p.F105F|FIP1L1_uc010ign.2_RNA|FIP1L1_uc003had.2_5'UTR|FIP1L1_uc003hae.2_5'UTR	NM_030917	NP_112179	Q6UN15	FIP1_HUMAN	FIP1 like 1 isoform 1	360	Pro-rich.				mRNA processing	nucleus	RNA binding			ovary(1)|skin(1)	2			GBM - Glioblastoma multiforme(3;3.31e-36)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CTCCGTTTTTCCCTCCAGGAG	0.328			T	PDGFRA	idiopathic hypereosinophilic syndrome								6	17					0	0	0.001168	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68956357	68956357	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:68956357C>T	uc003hdt.1	-	3	215	c.166G>A	c.(166-168)GAT>AAT	p.D56N		NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	56	SEA.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						AAAGACTTATCATCTGAAAGG	0.333													21	37					0	0	0.003330	0	0
UGT2B10	7365	broad.mit.edu	37	4	69681966	69681966	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:69681966C>T	uc003hee.2	+	1	254	c.229C>T	c.(229-231)CCT>TCT	p.P77S	UGT2B10_uc011cam.1_Missense_Mutation_p.P77S	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	77					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TGAAGTTTATCCTACATCTTT	0.348													32	59					0	0	0.009535	0	0
EPGN	255324	broad.mit.edu	37	4	75174855	75174855	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:75174855C>T	uc003hic.1	+	2	136	c.89C>T	c.(88-90)CCA>CTA	p.P30L	uc003hhv.1_Intron|EPGN_uc003hhw.2_Missense_Mutation_p.P30L|EPGN_uc003hhx.1_RNA|EPGN_uc003hhy.1_Missense_Mutation_p.P30L|EPGN_uc003hhz.1_Missense_Mutation_p.P30L|EPGN_uc010iin.1_Intron|EPGN_uc003hia.1_Missense_Mutation_p.P30L|EPGN_uc003hib.1_Missense_Mutation_p.P30L			Q6UW88	EPGN_HUMAN	SubName: Full=cDNA FLJ75542;	30	Extracellular (Potential).				activation of MAPK activity|angiogenesis|positive regulation of epidermal growth factor receptor activity|positive regulation of epithelial cell proliferation|positive regulation of mitosis	extracellular region|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity|MAP kinase kinase activity				0			Lung(101;0.196)			GTAACACCTCCAATCACAGCC	0.428													33	57					0	0	0.003755	0	0
GK2	2712	broad.mit.edu	37	4	80328580	80328580	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:80328580C>T	uc003hlu.2	-	1	793	c.775G>A	c.(775-777)GAC>AAC	p.D259N		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	259		Substrate (By similarity).			glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GCACATTGGTCCCCCAAACAC	0.458													37	80					0	0	0.010771	0	0
BMP3	651	broad.mit.edu	37	4	81967316	81967316	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:81967316C>T	uc003hmg.3	+	2	1061	c.741C>T	c.(739-741)GCC>GCT	p.A247A		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	247					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						CCAATGATGCCGCCATTTCTG	0.483													43	72					0	0	0.008740	0	0
ADH1C	126	broad.mit.edu	37	4	100261813	100261813	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:100261813C>T	uc003huu.2	-	9	968	c.883G>A	c.(883-885)GTA>ATA	p.V295I		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	295	NAD.				ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	TCAGGAGGTACCCCTACAATG	0.458									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				69	131					0	0	0.003610	0	0
RG9MTD2	93587	broad.mit.edu	37	4	100478546	100478546	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:100478546G>A	uc003huy.2	-	4	689	c.376C>T	c.(376-378)CAA>TAA	p.Q126*	RG9MTD2_uc003huz.3_Nonsense_Mutation_p.Q126*|RG9MTD2_uc003hva.3_Nonsense_Mutation_p.Q126*	NM_152292	NP_689505	Q8TBZ6	RG9D2_HUMAN	RNA (guanine-9-) methyltransferase domain	126							methyltransferase activity			ovary(2)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.7e-08)		TAACATCGTTGAATCTGCTTA	0.353													17	39					0	0	0.007413	0	0
KIAA1109	84162	broad.mit.edu	37	4	123249418	123249418	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:123249418G>C	uc003ieh.2	+	64	11200	c.11155G>C	c.(11155-11157)GAT>CAT	p.D3719H	KIAA1109_uc003iem.2_Missense_Mutation_p.D110H	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3719					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GGGCCGACGGGATGACAGTTT	0.438													31	51					0	0	0.003271	0	0
SLC25A31	83447	broad.mit.edu	37	4	128694625	128694625	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:128694625C>T	uc003ifl.2	+	6	990	c.844C>T	c.(844-846)CGT>TGT	p.R282C		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	282	Solcar 3.				transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						TTCCTTTTTTCGTGGCGCCTT	0.383													22	23					0	0	0.002299	0	0
MAML3	55534	broad.mit.edu	37	4	140651714	140651714	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:140651714G>A	uc003ihz.1	-	4	2927	c.2175C>T	c.(2173-2175)TTC>TTT	p.F725F	MGST2_uc010ioi.1_Intron|MAML3_uc011chd.1_Silent_p.F192F	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	725	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GGCTGCCCAGGAAGCCGGGGC	0.532													4	9					0	0	0.009096	0	0
FBXW7	55294	broad.mit.edu	37	4	153247366	153247366	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:153247366C>T	uc003ims.2	-	10	1585	c.1436G>A	c.(1435-1437)CGA>CAA	p.R479Q	FBXW7_uc011cii.1_Missense_Mutation_p.R479Q|FBXW7_uc003imt.2_Missense_Mutation_p.R479Q|FBXW7_uc011cih.1_Missense_Mutation_p.R303Q|FBXW7_uc003imq.2_Missense_Mutation_p.R399Q|FBXW7_uc003imr.2_Missense_Mutation_p.R361Q	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	479	WD 3.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.R479Q(31)|p.R479L(7)|p.R479G(3)|p.R399Q(2)|p.R240L(1)|p.R399L(1)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				AGTGGCATCTCGAGAACCGCT	0.403			Mis|N|D|F		colorectal|endometrial|T-ALL								23	42					0	0	0.002780	0	0
FGA	2243	broad.mit.edu	37	4	155509998	155509998	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:155509998G>A	uc003iod.1	-	3	369	c.311C>T	c.(310-312)TCG>TTG	p.S104L	FGA_uc003ioe.1_Missense_Mutation_p.S104L|FGA_uc003iof.1_Missense_Mutation_p.S104L	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	104	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGTGGTCAACGAATGAGAATC	0.294													45	112					0	0	0.003610	0	0
FSTL5	56884	broad.mit.edu	37	4	162307342	162307342	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr4:162307342G>A	uc003iqh.2	-	16	2537	c.2101C>T	c.(2101-2103)CCA>TCA	p.P701S	FSTL5_uc003iqi.2_Missense_Mutation_p.P700S|FSTL5_uc010iqv.2_Missense_Mutation_p.P691S|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	701						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TGGCCATCTGGAGAGACATAT	0.463													19	50					0	0	0.007413	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5240009	5240009	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:5240009G>A	uc003jdl.2	+	16	2632	c.2494G>A	c.(2494-2496)GGA>AGA	p.G832R	ADAMTS16_uc003jdk.1_Missense_Mutation_p.G832R	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	832	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						AATCGCTACTGGACCAACCAA	0.512													41	80					0	0	0.009718	0	0
CTNND2	1501	broad.mit.edu	37	5	11565169	11565169	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:11565169C>T	uc003jfa.1	-	3	320	c.175_splice	c.e3-1	p.E59_splice	CTNND2_uc010itt.2_Splice_Site|CTNND2_uc011cmy.1_Splice_Site|CTNND2_uc011cmz.1_Splice_Site|CTNND2_uc010itu.1_Splice_Site	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2						multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ACTGTAATTCCTGAAAGAAAC	0.473													10	21					0	0	0.008291	0	0
DNAH5	1767	broad.mit.edu	37	5	13809263	13809263	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:13809263C>T	uc003jfd.2	-	46	7684	c.7642G>A	c.(7642-7644)GAA>AAA	p.E2548K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2548					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TACAGGTATTCCTGGGTACGC	0.438									Kartagener_syndrome				51	85					0	0	0.003610	0	0
DNAH5	1767	broad.mit.edu	37	5	13922271	13922271	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:13922271G>A	uc003jfd.2	-	5	647	c.605C>T	c.(604-606)TCC>TTC	p.S202F	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	202	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCTTCCAGGGAGCTCAAGAA	0.542									Kartagener_syndrome				10	25					0	0	0.001368	0	0
PRDM9	56979	broad.mit.edu	37	5	23526840	23526840	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:23526840G>A	uc003jgo.2	+	11	1825	c.1643G>A	c.(1642-1644)GGG>GAG	p.G548E		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	548					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACACATACAGGGGAGAAGCTC	0.488										HNSCC(3;0.000094)			35	64					0	0	0.004289	0	0
LIFR	3977	broad.mit.edu	37	5	38482701	38482701	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:38482701C>T	uc010ive.1	-	19	2992	c.2660G>A	c.(2659-2661)AGT>AAT	p.S887N	LIFR_uc003jli.2_Missense_Mutation_p.S887N	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	887	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CTCACAGACACTCTTTTGAAA	0.249			T	PLAG1	salivary adenoma								13	38					0	0	0.004007	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000789	41000789	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:41000789C>A	uc003jmj.3	-	38	4831	c.4341G>T	c.(4339-4341)AAG>AAT	p.K1447N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.K1002N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1447							binding			ovary(6)|central_nervous_system(2)	8						CAACTCCAATCTTGGGGTTGG	0.488													9	13					1.12685e-05	1.15323e-05	0.004482	1	0
C6	729	broad.mit.edu	37	5	41160458	41160458	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:41160458G>A	uc003jmk.2	-	11	1680	c.1470C>T	c.(1468-1470)ATC>ATT	p.I490I	C6_uc003jml.1_Silent_p.I490I	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	490	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CCAAGTCCACGATGGGGGCAA	0.498													16	43					0	0	0.003163	0	0
MAP3K1	4214	broad.mit.edu	37	5	56178115	56178115	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:56178115C>T	uc003jqw.3	+	14	3589	c.3088C>T	c.(3088-3090)CAC>TAC	p.H1030Y		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	1030					cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		TCTACAATTCCACAGAAACTG	0.448													20	54					0	0	0.007413	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101709193	101709193	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:101709193G>A	uc003knn.2	-	13	2195	c.2023C>T	c.(2023-2025)CTT>TTT	p.L675F	SLCO6A1_uc003kno.2_Missense_Mutation_p.L422F|SLCO6A1_uc003knp.2_Missense_Mutation_p.L675F|SLCO6A1_uc003knq.2_Missense_Mutation_p.L613F	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	675	Helical; Name=12; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AGTTTGCAAAGAAAACCTAAA	0.308													17	36					0	0	0.006122	0	0
APC	324	broad.mit.edu	37	5	112174732	112174732	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:112174732C>T	uc010jby.2	+	16	3821	c.3441C>T	c.(3439-3441)TAC>TAT	p.Y1147Y	APC_uc011cvt.1_Silent_p.Y1129Y|APC_uc003kpz.3_Silent_p.Y1147Y|APC_uc003kpy.3_Silent_p.Y1147Y|APC_uc010jbz.2_Silent_p.Y864Y|APC_uc010jca.2_Silent_p.Y447Y	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1147	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.|Asp/Glu-rich (acidic).				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.N1142fs*5(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GTGAACGTTACTCTGAAGAAG	0.343		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			13	26					0	0	0.001855	0	0
TMED7-TICAM2	100302736	broad.mit.edu	37	5	114916853	114916853	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:114916853G>A	uc003krd.2	-	4	1107	c.101C>T	c.(100-102)TCC>TTC	p.S34F	TMED7-TICAM2_uc003kre.2_Missense_Mutation_p.S203F|TICAM2_uc003krc.2_Missense_Mutation_p.S34F	NM_021649	NP_067681	Q86XR7	TCAM2_HUMAN	toll-like receptor adaptor molecule 2	34					I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	Golgi apparatus|intrinsic to membrane|plasma membrane	protein binding|transmembrane receptor activity				0						AGACTTCTTGGAATCTGACTC	0.468													43	95					0	0	0.008740	0	0
LRRTM2	26045	broad.mit.edu	37	5	138208984	138208984	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:138208984C>T	uc011cyz.1	-	2	1723	c.1266G>A	c.(1264-1266)CGG>CGA	p.R422R	CTNNA1_uc003ldh.2_Intron|CTNNA1_uc011cyx.1_Intron|CTNNA1_uc011cyy.1_Intron|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Intron|LRRTM2_uc010jez.2_Intron|LRRTM2_uc011cza.1_Silent_p.R288R|CTNNA1_uc003ldl.2_5'Flank	NM_015564	NP_056379	O43300	LRRT2_HUMAN	leucine rich repeat transmembrane neuronal 2	422	Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CCGTAATTACCCGCTGAGTGA	0.408													44	84					0	0	0.003610	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724205	140724205	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:140724205G>A	uc003ljm.1	+	1	605	c.605G>A	c.(604-606)CGT>CAT	p.R202H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Translation_Start_Site|PCDHGA3_uc011dap.1_Missense_Mutation_p.R202H	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	202	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCTGGACCGTGAGAAAAAA	0.537													27	49					0	0	0.005443	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140866358	140866358	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr5:140866358C>T	uc003lky.1	+	1	1618	c.1618C>T	c.(1618-1620)CGG>TGG	p.R540W	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.R540W|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	540	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCCCGGGATCGGGGCAACCC	0.562													50	90					0	0	0.003610	0	0
HIST1H2BA	255626	broad.mit.edu	37	6	25727171	25727171	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:25727171C>T	uc003nfd.2	+	1	35	c.35C>T	c.(34-36)TCC>TTC	p.S12F	HIST1H2AA_uc003nfc.2_5'Flank	NM_170610	NP_733759	Q96A08	H2B1A_HUMAN	histone cluster 1, H2ba	12					nucleosome assembly	nucleosome|nucleus	DNA binding			kidney(1)	1						GCTACCATTTCCAAGAAGGGC	0.453													22	54					0	0	0.003954	0	0
ABCF1	23	broad.mit.edu	37	6	30552334	30552334	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:30552334C>T	uc003nql.2	+	14	1477	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F	ABCF1_uc003nqk.2_Missense_Mutation_p.S462F|ABCF1_uc003nqm.2_Missense_Mutation_p.S423F|ABCF1_uc010jsb.2_Intron	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	461	ABC transporter 1.				inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						ATGCGTGTCTCCCTGGCCAGG	0.607													26	48					0	0	0.010818	0	0
DHX16	8449	broad.mit.edu	37	6	30627339	30627339	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:30627339G>A	uc003nqz.2	-	12	2129	c.1917C>T	c.(1915-1917)ATC>ATT	p.I639I	DHX16_uc003nqy.2_Silent_p.I158I|DHX16_uc011dmo.1_Silent_p.I579I	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	639	Helicase C-terminal.				mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						GGAGCTCCCGGATTTTGGAGC	0.612													9	18					0	0	0.004482	0	0
LY6G6F	259215	broad.mit.edu	37	6	31678186	31678186	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:31678186C>T	uc003nwa.1	+	5	860	c.860C>T	c.(859-861)GCC>GTC	p.A287V	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Intron	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	287	Cytoplasmic (Potential).					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						ATCCATTTGGCCCGTCTTGGG	0.542													153	326					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32038156	32038156	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:32038156G>A	uc003nzl.2	-	14	5228	c.5026C>T	c.(5026-5028)CGC>TGC	p.R1676C		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1758	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCCCCAAGGCGGGGTGGGGCC	0.597													80	127					0	0	0.003610	0	0
GLP1R	2740	broad.mit.edu	37	6	39041389	39041389	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:39041389T>C	uc003ooj.3	+	7	727	c.667T>C	c.(667-669)TCT>CCT	p.S223P	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	223	Extracellular (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	CCCCCAGGACTCTCTGAGCTG	0.592													3	78					0	0	0.000602	0	0
SUPT3H	8464	broad.mit.edu	37	6	44900436	44900436	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:44900436G>A	uc003oxo.2	-	12	1217	c.899C>T	c.(898-900)GCC>GTC	p.A300V	SUPT3H_uc003oxn.1_Missense_Mutation_p.A289V|SUPT3H_uc011dvv.1_Missense_Mutation_p.A137V|SUPT3H_uc003oxp.2_Missense_Mutation_p.A289V|SUPT3H_uc011dvw.1_Missense_Mutation_p.A203V	NM_181356	NP_852001	O75486	SUPT3_HUMAN	suppressor of Ty 3 homolog isoform 2	371					histone deubiquitination|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	STAGA complex|transcription factor TFTC complex	DNA binding|transcription coactivator activity			ovary(2)|breast(1)	3						GCGTCGAATGGCCTCTCTGAT	0.428													10	23					0	0	0.001855	0	0
CRISP3	10321	broad.mit.edu	37	6	49703299	49703299	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:49703299C>T	uc003ozs.2	-	4	210	c.195G>A	c.(193-195)TGG>TGA	p.W65*		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	65					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			CCTCTTTGTTCCATTCCTGAA	0.378													37	57					0	0	0.006230	0	0
GFRAL	389400	broad.mit.edu	37	6	55216215	55216215	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:55216215C>T	uc003pcm.1	+	5	621	c.535C>T	c.(535-537)CCT>TCT	p.P179S		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	179	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TCAAAATATACCTTTTAACAT	0.433													42	94					0	0	0.011902	0	0
SPACA1	81833	broad.mit.edu	37	6	88757815	88757815	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:88757815G>A	uc003pmn.2	+	1	309	c.192G>A	c.(190-192)CCG>CCA	p.P64P		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	64	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		ACTACGCTCCGCCTGAAACCG	0.647													11	15					0	0	0.003163	0	0
CNR1	1268	broad.mit.edu	37	6	88854925	88854925	+	Silent	SNP	C	T	T	rs144795421		TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:88854925C>T	uc011dzq.1	-	2	3632	c.69G>A	c.(67-69)GTG>GTA	p.V23V	CNR1_uc010kbz.2_Silent_p.V23V|CNR1_uc011dzr.1_Silent_p.V23V|CNR1_uc011dzs.1_Silent_p.V23V|CNR1_uc003pmq.3_Silent_p.V23V|CNR1_uc011dzt.1_Silent_p.V23V|CNR1_uc010kca.2_Intron	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	23	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	CATTTGAGCCCACGTACAGGA	0.463													36	89					0	0	0.006230	0	0
FUT9	10690	broad.mit.edu	37	6	96651433	96651433	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:96651433G>A	uc003pop.3	+	3	743	c.402G>A	c.(400-402)ATG>ATA	p.M134I		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	134	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		GGATTTGGATGAATTTGGAAT	0.458													20	41					0	0	0.007413	0	0
RFX6	222546	broad.mit.edu	37	6	117250035	117250035	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:117250035C>T	uc003pxm.2	+	18	2575	c.2512C>T	c.(2512-2514)CAC>TAC	p.H838Y		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	838					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CAGTGACATCCACGATCCACT	0.473													29	52					0	0	0.005443	0	0
NKAIN2	154215	broad.mit.edu	37	6	125139609	125139609	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:125139609G>T	uc003pzo.2	+	6	889	c.612G>T	c.(610-612)ATG>ATT	p.M204I	NKAIN2_uc003pzp.2_Missense_Mutation_p.M203I|NKAIN2_uc010keq.2_Missense_Mutation_p.M137I|NKAIN2_uc010ker.2_Missense_Mutation_p.M114I	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	204						integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		TACAGCCTATGTACATGTAAG	0.368													13	36					3.27435e-08	3.37358e-08	0.002450	1	0
TMEM200A	114801	broad.mit.edu	37	6	130762876	130762876	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:130762876G>A	uc003qca.2	+	3	2180	c.1309G>A	c.(1309-1311)GAA>AAA	p.E437K	TMEM200A_uc010kfh.2_Missense_Mutation_p.E437K|TMEM200A_uc010kfi.2_Missense_Mutation_p.E437K|TMEM200A_uc003qcb.2_Missense_Mutation_p.E437K	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	437	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		AGAGAACAAAGAAGACCCGAT	0.423													22	33					0	0	0.002299	0	0
PHACTR2	9749	broad.mit.edu	37	6	144086817	144086817	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr6:144086817G>A	uc003qjq.3	+	6	1211	c.1081G>A	c.(1081-1083)GCT>ACT	p.A361T	PHACTR2_uc010khh.2_Missense_Mutation_p.A281T|PHACTR2_uc010khi.2_Missense_Mutation_p.A372T|PHACTR2_uc003qjr.3_Missense_Mutation_p.A292T	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3	361							actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		CAGCGTTGGAGCTGACCTGCC	0.567													38	58					0	0	0.006999	0	0
SDK1	221935	broad.mit.edu	37	7	3658864	3658864	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:3658864G>T	uc003smx.2	+	2	590	c.451G>T	c.(451-453)GAA>TAA	p.E151*		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	151	Ig-like C2-type 1.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTACAGCAGCGAATATAAGTA	0.453													12	34					9.05144e-12	9.42089e-12	0.001855	1	0
SDK1	221935	broad.mit.edu	37	7	4091391	4091391	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:4091391C>T	uc003smx.2	+	19	2979	c.2840C>T	c.(2839-2841)TCC>TTC	p.S947F	SDK1_uc010kso.2_Missense_Mutation_p.S223F	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	947	Fibronectin type-III 3.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TACTTCACTTCCGTTCTGTGC	0.552													42	94					0	0	0.010771	0	0
CDCA7L	55536	broad.mit.edu	37	7	21947944	21947944	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:21947944G>A	uc010kuk.2	-	4	605	c.485C>T	c.(484-486)TCT>TTT	p.S162F	CDCA7L_uc003sve.3_Missense_Mutation_p.S128F|CDCA7L_uc010kul.2_Missense_Mutation_p.S116F|CDCA7L_uc003svf.3_Missense_Mutation_p.S161F|CDCA7L_uc011jyk.1_Missense_Mutation_p.S162F	NM_018719	NP_061189	Q96GN5	CDA7L_HUMAN	cell division cycle associated 7-like isoform 1	162					positive regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus					0						CTGCTCGGAAGAACTGTTTTT	0.418													13	30					0	0	0.001855	0	0
AOAH	313	broad.mit.edu	37	7	36698799	36698799	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:36698799G>A	uc003tfh.3	-	4	763	c.362C>T	c.(361-363)CCA>CTA	p.P121L	AOAH_uc010kxf.2_Missense_Mutation_p.P121L|AOAH_uc011kba.1_Missense_Mutation_p.P89L	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	121					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						ATGACACAATGGTTGGCCAGT	0.463													41	72					0	0	0.011902	0	0
TXNDC3	51314	broad.mit.edu	37	7	37916566	37916566	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:37916566G>A	uc003tfn.2	+	12	1323	c.951G>A	c.(949-951)AAG>AAA	p.K317K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	317	NDK 2.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AATTAGAAAAGACATTGGCAT	0.333									Kartagener_syndrome				7	28					0	0	0.006214	0	0
VPS41	27072	broad.mit.edu	37	7	38813801	38813801	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:38813801G>A	uc003tgy.2	-	12	952	c.926C>T	c.(925-927)CCA>CTA	p.P309L	VPS41_uc003tgz.2_Missense_Mutation_p.P284L|VPS41_uc010kxn.2_Missense_Mutation_p.P220L	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	309					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						CTCAGAAAGTGGCTGGATGAT	0.378													79	121					0	0	0.003610	0	0
HIP1	3092	broad.mit.edu	37	7	75178284	75178284	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:75178284C>T	uc003uds.1	-	23	2352	c.2311G>A	c.(2311-2313)GGA>AGA	p.G771R	HIP1_uc011kfz.1_Missense_Mutation_p.G648R	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	771	I/LWEQ.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						ATGTCCAGTCCCCTGGGCAGG	0.562			T	PDGFRB	CMML								46	93					0	0	0.009718	0	0
DLX5	1749	broad.mit.edu	37	7	96650112	96650112	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:96650112G>A	uc003uon.2	-	3	1014	c.806C>T	c.(805-807)TCC>TTC	p.S269F		NM_005221	NP_005212	P56178	DLX5_HUMAN	distal-less homeobox 5	269					cell proliferation|endochondral ossification|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					CGGCAGGTGGGAATTGATTGA	0.597													15	38					0	0	0.004007	0	0
TFEC	22797	broad.mit.edu	37	7	115580888	115580888	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:115580888G>A	uc003vhj.1	-	8	945	c.761C>T	c.(760-762)CCT>CTT	p.P254L	TFEC_uc003vhk.1_Missense_Mutation_p.P225L|TFEC_uc003vhl.3_3'UTR|TFEC_uc011kmw.1_3'UTR	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	254						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			ATTCTGCTCAGGATGGCTCTG	0.493													58	95					0	0	0.003610	0	0
PLXNA4	91584	broad.mit.edu	37	7	131864512	131864512	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:131864512T>G	uc003vra.3	-	20	4037	c.3808A>C	c.(3808-3810)ACG>CCG	p.T1270P		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1270	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CGCTTCAGCGTGAGGTCACTT	0.587													7	20					0	0	0.006214	0	0
AKR1B1	231	broad.mit.edu	37	7	134136347	134136347	+	Silent	SNP	G	A	A	rs115549384	by1000genomes	TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:134136347G>A	uc003vrp.1	-	2	299	c.225C>T	c.(223-225)ATC>ATT	p.I75I	AKR1B1_uc003vrq.1_RNA	NM_001628	NP_001619	P15121	ALDR_HUMAN	aldo-keto reductase family 1, member B1	75					C21-steroid hormone biosynthetic process|carbohydrate metabolic process|response to stress	cytosol|extracellular space|nucleus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding			ovary(3)	3					NADH(DB00157)|Sulindac(DB00605)	CCTTGCTGACGATGAAGAGCT	0.562													26	64					0	0	0.008361	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				22	37					0	0	0.004656	0	0
OR9A4	130075	broad.mit.edu	37	7	141618923	141618923	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:141618923G>A	uc003vwu.1	+	1	248	c.248G>A	c.(247-249)GGA>GAA	p.G83E		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					ATGCTTTGGGGATTGCTGCTC	0.517													37	109					0	0	0.003755	0	0
HTR5A	3361	broad.mit.edu	37	7	154876005	154876005	+	Silent	SNP	C	T	T	rs145653373		TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr7:154876005C>T	uc003wlu.1	+	2	946	c.882C>T	c.(880-882)TTC>TTT	p.F294F		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	294	Helical; Name=6; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		TTGGCGTGTTCGTGCTCTGCT	0.622													34	65					0	0	0.003755	0	0
C8orf34	116328	broad.mit.edu	37	8	69358599	69358599	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr8:69358599G>A	uc010lyz.2	+	3	302	c.253G>A	c.(253-255)GAT>AAT	p.D85N	C8orf34_uc010lyx.1_Missense_Mutation_p.D85N|C8orf34_uc010lyy.1_Missense_Mutation_p.D85N|C8orf34_uc003xyb.2_Missense_Mutation_p.D60N	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	85					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CAGAAGCTATGATAAACCTTG	0.338													49	34					0	0	0.003610	0	0
KCNB2	9312	broad.mit.edu	37	8	73480322	73480322	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr8:73480322C>T	uc003xzb.2	+	2	941	c.353C>T	c.(352-354)TCG>TTG	p.S118L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	118	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TGTGCACTTTCGTTTGGCCAA	0.423													48	46					0	0	0.003610	0	0
PDP1	54704	broad.mit.edu	37	8	94935737	94935737	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr8:94935737C>T	uc003yge.2	+	2	1719	c.1450C>T	c.(1450-1452)CGC>TGC	p.R484C	PDP1_uc003ygf.2_Missense_Mutation_p.R509C|PDP1_uc010max.2_Missense_Mutation_p.R509C|PDP1_uc011lgm.1_Missense_Mutation_p.R484C|PDP1_uc011lgn.1_Missense_Mutation_p.R543C	NM_018444	NP_060914	Q9P0J1	PDP1_HUMAN	pyruvate dehyrogenase phosphatase catalytic	484					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						CCATCTCATTCGCCACGCTGT	0.478													33	110					0	0	0.004289	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814337	106814337	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr8:106814337C>T	uc003ymd.2	+	8	2050	c.2027C>T	c.(2026-2028)CCC>CTC	p.P676L	ZFPM2_uc011lhs.1_Missense_Mutation_p.P407L	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	676					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CCCAGTGTCCCCTTAGTGGAT	0.428													19	17					0	0	0.007413	0	0
RAD21	5885	broad.mit.edu	37	8	117866524	117866524	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr8:117866524G>A	uc003yod.2	-	9	1409	c.1121C>T	c.(1120-1122)TCT>TTT	p.S374F		NM_006265	NP_006256	O60216	RAD21_HUMAN	RAD21 homolog	374	Interaction with WAPAL and PDS5B.|Interaction with STAG1.				apoptosis|cell division|chromosome segregation|double-strand break repair|mitotic metaphase/anaphase transition|mitotic prometaphase|protein localization to chromatin|reciprocal meiotic recombination|regulation of transcription from RNA polymerase II promoter	chromosome, centromeric region|cohesin complex|nuclear chromosome|nucleoplasm	protein binding			lung(1)|skin(1)	2	all_cancers(13;1.21e-21)|Lung NSC(37;0.000134)|Ovarian(258;0.0172)					AGCAGGTAAAGAAAACAGTTT	0.348													38	29					0	0	0.007835	0	0
GPR20	2843	broad.mit.edu	37	8	142367672	142367672	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr8:142367672C>T	uc003ywf.2	-	2	441	c.352G>A	c.(352-354)GGC>AGC	p.G118S		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	118	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			CGCAGGCAGCCCCTGGCGCCG	0.612													22	41					0	0	0.002780	0	0
ARC	23237	broad.mit.edu	37	8	143695445	143695445	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr8:143695445C>T	uc003ywn.1	-	1	389	c.188G>A	c.(187-189)GGG>GAG	p.G63E		NM_015193	NP_056008	Q7LC44	ARC_HUMAN	activity-regulated cytoskeleton-associated	63	Potential.				endocytosis	acrosomal vesicle|cell junction|dendritic spine|endosome|postsynaptic density|postsynaptic membrane				breast(1)	1	all_cancers(97;3.55e-12)|all_epithelial(106;1.03e-08)|Lung NSC(106;0.000353)|all_lung(105;0.00092)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.0279)				CCGGTGCAGCCCCTTCAGCTC	0.682													6	17					0	0	0.003080	0	0
PTPRD	5789	broad.mit.edu	37	9	8486162	8486162	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr9:8486162G>A	uc003zkk.2	-	27	3366	c.2655C>T	c.(2653-2655)ATC>ATT	p.I885I	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Silent_p.I876I|PTPRD_uc003zkm.2_Silent_p.I872I|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	885	Fibronectin type-III 6.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CTCCCTTGTGGATGTCTGTAG	0.463										TSP Lung(15;0.13)			20	18					0	0	0.012319	0	0
FREM1	158326	broad.mit.edu	37	9	14812992	14812992	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr9:14812992C>T	uc003zlm.2	-	16	3301	c.2711G>A	c.(2710-2712)GGA>GAA	p.G904E	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	904	CSPG 6.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CACCTCTCCTCCCTCTGAGCA	0.463													53	39					0	0	0.003610	0	0
COL15A1	1306	broad.mit.edu	37	9	101817395	101817395	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr9:101817395G>A	uc004azb.1	+	33	3249	c.3043G>A	c.(3043-3045)GAT>AAT	p.D1015N		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1015	Nonhelical region 7 (NC7).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TCCTCCACTTGATCTAGCTTA	0.353													60	38					0	0	0.003610	0	0
STX17	55014	broad.mit.edu	37	9	102730754	102730754	+	Silent	SNP	T	G	G			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr9:102730754T>G	uc004bal.3	+	8	844	c.708T>G	c.(706-708)GGT>GGG	p.G236G	STX17_uc010msx.2_RNA|STX17_uc011lvd.1_RNA	NM_017919	NP_060389	P56962	STX17_HUMAN	syntaxin 17	236	Helical; Anchor for type IV membrane protein; (Potential).				intracellular protein transport|vesicle-mediated transport	endoplasmic reticulum|integral to membrane|nucleolus	SNAP receptor activity			large_intestine(1)	1		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				CTGTGGCAGGTGCACTCATCG	0.488													4	5					0	0	0.001855	0	0
ABL1	25	broad.mit.edu	37	9	133756025	133756025	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr9:133756025C>T	uc004bzw.2	+	10	1655	c.1652C>T	c.(1651-1653)CCT>CTT	p.P551L	ABL1_uc004bzv.2_Missense_Mutation_p.P570L	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	551					actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	CCTGAGATGCCTCACTCCAAG	0.622			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								12	17					0	0	0.001855	0	0
EHMT1	79813	broad.mit.edu	37	9	140638524	140638524	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr9:140638524G>A	uc011mfc.1	+	6	1189	c.1152G>A	c.(1150-1152)GAG>GAA	p.E384E	EHMT1_uc004coa.2_Silent_p.E384E|EHMT1_uc004cob.1_Silent_p.E353E	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	384					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		GCATGTCGGAGGCTGATCGCG	0.572													21	14					0	0	0.010504	0	0
P2RY8	286530	broad.mit.edu	37	X	1584751	1584751	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:1584751C>T	uc004cpz.2	-	2	949	c.701G>A	c.(700-702)CGC>CAC	p.R234H		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	234	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCCCACCGCGCGCCTCCGCTG	0.657			T	CRLF2	B-ALL|Downs associated ALL								15	29					0	0	0.002450	0	0
MAP7D2	256714	broad.mit.edu	37	X	20034251	20034251	+	Silent	SNP	T	C	C			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:20034251T>C	uc004czr.1	-	10	1501	c.1482A>G	c.(1480-1482)CAA>CAG	p.Q494Q	MAP7D2_uc004czq.1_Silent_p.Q379Q|MAP7D2_uc011mji.1_Silent_p.Q442Q|MAP7D2_uc010nfo.1_Silent_p.Q535Q|MAP7D2_uc011mjj.1_Silent_p.Q449Q	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	494										ovary(2)|breast(1)	3						tttcttgttcttgcttttctt	0.149													6	10					0	0	0.001168	0	0
DMD	1756	broad.mit.edu	37	X	32429959	32429959	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:32429959T>A	uc004dda.1	-	30	4387	c.4143A>T	c.(4141-4143)TTA>TTT	p.L1381F	DMD_uc004dcw.2_Missense_Mutation_p.L37F|DMD_uc004dcx.2_Missense_Mutation_p.L40F|DMD_uc004dcz.2_Missense_Mutation_p.L1258F|DMD_uc004dcy.1_Missense_Mutation_p.L1377F|DMD_uc004ddb.1_Missense_Mutation_p.L1373F|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1381					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ACTCCTGGATTAAGTGTAAGG	0.458													26	43					0	0	0.005443	0	0
MAGED1	9500	broad.mit.edu	37	X	51639952	51639952	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:51639952C>T	uc004dpm.2	+	4	1296	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S	MAGED1_uc004dpn.2_Missense_Mutation_p.P457S|MAGED1_uc004dpo.2_Missense_Mutation_p.P401S	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	401	Pro-rich.|22 X 6 AA tandem repeats of W-[PQ]-X-P-X- X.|15.				apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					CTGGCAAGGTCCTCCTGACTG	0.647										Multiple Myeloma(10;0.10)			5	13					0	0	0.000602	0	0
HEPH	9843	broad.mit.edu	37	X	65476088	65476088	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:65476088G>A	uc011moz.1	+	17	2881	c.2821G>A	c.(2821-2823)GAA>AAA	p.E941K	HEPH_uc004dwn.2_Missense_Mutation_p.E941K|HEPH_uc004dwo.2_Missense_Mutation_p.E671K|HEPH_uc010nkr.2_Missense_Mutation_p.E749K|HEPH_uc011mpa.1_Missense_Mutation_p.E941K|HEPH_uc010nks.2_Missense_Mutation_p.E230K	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	938	Extracellular (Potential).|Plastocyanin-like 6.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						GTATTTGGAGGAAAATGTGGC	0.433													26	37					0	0	0.006320	0	0
ZMYM3	9203	broad.mit.edu	37	X	70468049	70468049	+	Silent	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:70468049G>A	uc004dzh.1	-	11	2025	c.1938C>T	c.(1936-1938)CTC>CTT	p.L646L	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Silent_p.L646L|ZMYM3_uc004dzj.1_Silent_p.L646L	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	646	MYM-type 7.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					CGCTGAATCGGAGTTTCTCAT	0.547													6	20					0	0	0.001984	0	0
TSIX	9383	broad.mit.edu	37	X	73046260	73046260	+	RNA	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:73046260G>A	uc004ebn.2	+	1		c.34221G>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GATGTGAATAGAAACAGAAGT	0.388													11	23					0	0	0.010729	0	0
CHM	1121	broad.mit.edu	37	X	85119751	85119751	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:85119751G>A	uc004eet.2	-	15	1876	c.1846C>T	c.(1846-1848)CTT>TTT	p.L616F	CHM_uc011mqz.1_Missense_Mutation_p.L468F	NM_000390	NP_000381	P24386	RAE1_HUMAN	choroideremia isoform a	616					intracellular protein transport|protein geranylgeranylation|response to stimulus|visual perception	Rab-protein geranylgeranyltransferase complex	GTPase activator activity|Rab geranylgeranyltransferase activity			ovary(1)	1		all_lung(315;5.41e-06)				TCTCCATCAAGGATAATGTCT	0.453													7	12					0	0	0.003080	0	0
LOC442459	442459	broad.mit.edu	37	X	98975143	98975143	+	RNA	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:98975143C>T	uc011mrd.1	-	8		c.1200G>A				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						AAAGCTGGTTCATCAAACCAT	0.488													5	13					0	0	0.001168	0	0
NRK	203447	broad.mit.edu	37	X	105189981	105189981	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:105189981G>A	uc004emd.2	+	25	4480	c.4177G>A	c.(4177-4179)GAG>AAG	p.E1393K	NRK_uc011msi.1_5'Flank	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1393	CNH.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GAGACCAGATGAGCTCCTTCA	0.443										HNSCC(51;0.14)			14	19					0	0	0.002450	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280605	105280605	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:105280605C>T	uc004eme.1	-	1	461	c.445G>A	c.(445-447)GAT>AAT	p.D149N	SERPINA7_uc010npd.2_Missense_Mutation_p.D149N|SERPINA7_uc010npe.1_Missense_Mutation_p.D149N	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	149					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	GTCTTGACATCATTCAAGAAC	0.428													69	139					0	0	0.003610	0	0
COL4A5	1287	broad.mit.edu	37	X	107925060	107925060	+	Silent	SNP	C	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:107925060C>T	uc004enz.1	+	46	4360	c.4158C>T	c.(4156-4158)ATC>ATT	p.I1386I	COL4A5_uc011mso.1_Silent_p.I1383I|COL4A5_uc011msp.1_Silent_p.I62I	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1380	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CTCCAGGAATCCCTGGCCAGC	0.443									Alport_syndrome_with_Diffuse_Leiomyomatosis				29	43					0	0	0.007291	0	0
ZNF75D	7626	broad.mit.edu	37	X	134421644	134421644	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:134421644G>A	uc004eyp.2	-	7	3613	c.958C>T	c.(958-960)CCT>TCT	p.P320S	ZNF75D_uc004eym.2_Intron|ZNF75D_uc004eyn.2_Missense_Mutation_p.P99S|ZNF75D_uc004eyo.2_Missense_Mutation_p.P225S	NM_007131	NP_009062	P51815	ZN75D_HUMAN	zinc finger protein 75	320					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GTATCACCAGGATTTTCCCTG	0.383													43	85					0	0	0.010771	0	0
GPR50	9248	broad.mit.edu	37	X	150349595	150349595	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:150349595G>T	uc010ntg.1	+	2	1675	c.1540G>T	c.(1540-1542)GAG>TAG	p.E514*		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	514	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CAGCCATGCTGAGCCCACCAC	0.607													28	103					7.76418e-22	8.19255e-22	0.005443	1	0
GABRQ	55879	broad.mit.edu	37	X	151818304	151818304	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:151818304G>A	uc004ffp.1	+	6	730	c.710G>A	c.(709-711)GGA>GAA	p.G237E		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	237	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ACTTTCCTGGGAAGGACGATT	0.483													41	69					0	0	0.008740	0	0
MECP2	4204	broad.mit.edu	37	X	153296630	153296630	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chrX:153296630G>A	uc004fjv.2	-	4	875	c.649C>T	c.(649-651)CCT>TCT	p.P217S	MECP2_uc004fjw.2_Missense_Mutation_p.P229S	NM_004992	NP_004983	P51608	MECP2_HUMAN	methyl CpG binding protein 2 isoform 1	217					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	heterochromatin|nucleus	double-stranded methylated DNA binding|protein domain specific binding|protein N-terminus binding|transcription corepressor activity				0	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGCTTCCCAGGACTTTTCTCC	0.617													103	174					0	0	0.003610	0	0
PCSK9	255738	broad.mit.edu	37	1	55505553	55505555	+	In_Frame_Del	DEL	CTG	-	-	rs67610340		TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr1:55505553_55505555delCTG	uc001cyf.1	+	1	334_336	c.43_45delCTG	c.(43-45)CTGdel	p.L23del	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_5'Flank	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	23			L -> LL (this polymoprhism seems to have a modifier effect on LDLR mutation and familial hypercholesterolemia).		cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						gccgctgccactgctgctgctgc	0.581													8	161	---	---	---	---					
REG1A	5967	broad.mit.edu	37	2	79350320	79350323	+	Frame_Shift_Del	DEL	TGTC	-	-			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr2:79350320_79350323delTGTC	uc002snz.2	+	6	583_586	c.480_483delTGTC	c.(478-483)TTTGTCfs	p.F160fs	REG1A_uc010ysd.1_Frame_Shift_Del_p.F160fs	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	160_161	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						AGTTCTCCTTTGTCTGCAAGTTCA	0.422													10	7	---	---	---	---					
PTPN23	25930	broad.mit.edu	37	3	47454624	47454626	+	In_Frame_Del	DEL	TGA	-	-			TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr3:47454624_47454626delTGA	uc003crf.1	+	25	4956_4958	c.4860_4862delTGA	c.(4858-4863)TCTGAC>TCC	p.D1622del	PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_In_Frame_Del_p.D1492del|uc003cri.2_5'Flank	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	1622					cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCCGGCCCTCTGACGACCCCCTC	0.581													26	75	---	---	---	---					
B4GALT1	2683	broad.mit.edu	37	9	33166963	33166983	+	In_Frame_Del	DEL	CGGCGGCACTGTTCGAGCCGC	-	-	rs1064905		TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr9:33166963_33166983delCGGCGGCACTGTTCGAGCCGC	uc003zsg.2	-	1	374_394	c.185_205delGCGGCTCGAACAGTGCCGCCG	c.(184-207)GGCGGCTCGAACAGTGCCGCCGCC>GCC	p.GGSNSAA62del		NM_001497	NP_001488	P15291	B4GT1_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	62_68	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	basolateral plasma membrane|brush border membrane|desmosome|external side of plasma membrane|extracellular region|glycocalyx|Golgi cisterna membrane|Golgi trans cisterna|integral to membrane	alpha-tubulin binding|beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|beta-tubulin binding|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity|protein binding|protein homodimerization activity				0			LUSC - Lung squamous cell carcinoma(29;0.0084)	GBM - Glioblastoma multiforme(74;0.121)	N-Acetyl-D-glucosamine(DB00141)	TGCCCGATGGCGGCGGCACTGTTCGAGCCGCCCTGCAGCGG	0.738													4	7	---	---	---	---					
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	-	-	rs35266724		TCGA-FS-A1YY-06A-11D-A197-08	TCGA-FS-A1YY-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cd0dc4d6-b5b1-4728-aa99-84defbf887bd	4429af46-c835-46e8-b971-ebacc4796386	g.chr9:139277995_139277997delGCT	uc004chh.2	-	15	1633_1635	c.1624_1626delAGC	c.(1624-1626)AGCdel	p.S542del		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	542					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGTCCTCCTCgctgctgctgctg	0.473													8	5	---	---	---	---					
