Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CELA3A	10136	broad.mit.edu	37	1	22331987	22331987	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:22331987C>T	uc001bfl.2	+	3	196	c.177C>T	c.(175-177)GGC>GGT	p.G59G	CELA3B_uc009vqf.2_Silent_p.G58G	NM_005747	NP_005738	P09093	CEL3A_HUMAN	elastase 3A, pancreatic preproprotein	59	Peptidase S1.				cholesterol metabolic process|digestion|proteolysis		serine-type endopeptidase activity			haematopoietic_and_lymphoid_tissue(1)	1						ACACGTGTGGCGGTAGCCTCA	0.612000											OREG0013211	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	278					0	0	0.729181	0	0
DMAP1	55929	broad.mit.edu	37	1	44680376	44680376	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:44680376G>C	uc001clq.1	+	4	279	c.199G>C	c.(199-201)GAT>CAT	p.D67H	DMAP1_uc010okq.1_Missense_Mutation_p.D93H|DMAP1_uc010okr.1_Missense_Mutation_p.D67H|DMAP1_uc010oks.1_Missense_Mutation_p.D67H|DMAP1_uc010okt.1_Missense_Mutation_p.D67H|DMAP1_uc001clr.1_Missense_Mutation_p.D67H|DMAP1_uc001cls.1_Missense_Mutation_p.D67H|DMAP1_uc010oku.1_Missense_Mutation_p.D67H	NM_001034024	NP_001029196	Q9NPF5	DMAP1_HUMAN	DNA methyltransferase 1 associated protein 1	67					DNA methylation|histone H2A acetylation|histone H4 acetylation|negative regulation of transcription, DNA-dependent|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex	DNA binding|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					CCCTGCCAGGGATGCACCCCC	0.522000													34	221					0	0	0.804634	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45486422	45486422	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:45486422G>T	uc001cnd.2	-	12	2716	c.2488C>A	c.(2488-2490)CAG>AAG	p.Q830K		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	830							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					ATGTGCTTCTGTATTGCTTCC	0.448000													95	585					2.76703e-59	3.12003e-59	0.870114	1	0
C1orf162	128346	broad.mit.edu	37	1	112020662	112020662	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:112020662G>A	uc001ebe.2	+	6	445	c.385G>A	c.(385-387)GAA>AAA	p.E129K		NM_174896	NP_777556	Q8NEQ5	CA162_HUMAN	hypothetical protein LOC128346	129						integral to membrane				ovary(1)	1		all_cancers(81;0.00116)|all_epithelial(167;0.000761)|all_lung(203;0.00277)|Lung NSC(277;0.0043)		Lung(183;0.0236)|Colorectal(144;0.0286)|all cancers(265;0.0572)|Epithelial(280;0.0862)|COAD - Colon adenocarcinoma(174;0.112)|LUSC - Lung squamous cell carcinoma(189;0.134)		CAAACTCTCAGAAGAAAAGAG	0.433000													46	212					0	0	0.870114	0	0
CD58	965	broad.mit.edu	37	1	117087113	117087113	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:117087113T>C	uc001egm.2	-	2	305	c.184A>G	c.(184-186)AAA>GAA	p.K62E	CD58_uc001egn.2_RNA|CD58_uc010owy.1_Missense_Mutation_p.K62E|CD58_uc001ego.1_RNA|CD58_uc001egp.3_Missense_Mutation_p.K62E	NM_001779	NP_001770	P19256	LFA3_HUMAN	CD58 molecule isoform 1	62	Extracellular (Potential).				blood coagulation|cell-cell adhesion|leukocyte migration	anchored to membrane|integral to plasma membrane	protein binding				0	Lung SC(450;0.225)	all_cancers(81;0.000363)|all_lung(203;0.000118)|all_epithelial(167;0.000149)|Lung NSC(69;0.000577)		Lung(183;0.0086)|LUSC - Lung squamous cell carcinoma(189;0.0528)|Colorectal(144;0.0775)|all cancers(265;0.109)|Epithelial(280;0.118)|COAD - Colon adenocarcinoma(174;0.121)		TCTGCAACTTTATCCTTTTGT	0.348000													31	114					0	0	0.750413	0	0
UBE2Q1	55585	broad.mit.edu	37	1	154525225	154525225	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:154525225C>G	uc001fff.1	-	6	892	c.801G>C	c.(799-801)CAG>CAC	p.Q267H		NM_017582	NP_060052	Q7Z7E8	UB2Q1_HUMAN	ubiquitin-conjugating enzyme E2Q	267							ATP binding|protein binding|ubiquitin-protein ligase activity				0	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			CTTTGAAACTCTGTGATCGGT	0.572000													11	253					0	0	0.361761	0	0
CHRNB2	1141	broad.mit.edu	37	1	154544140	154544140	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:154544140C>G	uc001ffg.2	+	5	1105	c.841C>G	c.(841-843)CTG>GTG	p.L281V		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	281	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	GGTCTTCCTGCTGCTCATCTC	0.577000													41	305					0	0	0.827153	0	0
OR10K2	391107	broad.mit.edu	37	1	158390123	158390123	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:158390123G>A	uc010pii.1	-	1	534	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					CAATGTCACAGAAGAAGTGAT	0.463000													48	258					0	0	0.870114	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517108	158517108	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:158517108G>T	uc010pil.1	-	1	788	c.788C>A	c.(787-789)ACC>AAC	p.T263N		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	263	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ACGGGCATAGGTGAAAAGTGT	0.483000													51	368					4.25531e-23	4.759e-23	0.870114	1	0
PPOX	5498	broad.mit.edu	37	1	161139773	161139773	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:161139773G>T	uc001fyj.2	+	9	1236	c.946G>T	c.(946-948)GTG>TTG	p.V316L	PPOX_uc001fyn.2_Intron|PPOX_uc001fyg.2_Missense_Mutation_p.V316L|PPOX_uc001fyl.2_Missense_Mutation_p.V282L|PPOX_uc001fym.2_RNA|PPOX_uc001fyk.2_Missense_Mutation_p.V154L|PPOX_uc001fyh.2_Missense_Mutation_p.V154L|PPOX_uc010pkg.1_Missense_Mutation_p.V154L|PPOX_uc009wuc.1_Missense_Mutation_p.V154L|PPOX_uc010pkh.1_Intron|PPOX_uc001fyi.2_Missense_Mutation_p.V154L	NM_001122764	NP_001116236	P50336	PPOX_HUMAN	protoporphyrinogen oxidase	316					heme biosynthetic process	intrinsic to mitochondrial inner membrane|mitochondrial intermembrane space	flavin adenine dinucleotide binding|oxygen-dependent protoporphyrinogen oxidase activity			ovary(1)	1	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GTCTGTAGCTGTGGTGAATCT	0.468000									Porphyria_Variegata				11	105					9.70103e-10	1.01842e-09	0.361761	1	0
HMCN1	83872	broad.mit.edu	37	1	185966578	185966578	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:185966578G>C	uc001grq.1	+	25	4025	c.3796G>C	c.(3796-3798)GAT>CAT	p.D1266H		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1266	Ig-like C2-type 10.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CACAGTGGAAGATCTAGAACC	0.383000													39	198					0	0	0.804634	0	0
CRB1	23418	broad.mit.edu	37	1	197404147	197404147	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:197404147C>G	uc001gtz.2	+	9	3289	c.3154C>G	c.(3154-3156)CAA>GAA	p.Q1052E	CRB1_uc010poz.1_Missense_Mutation_p.Q1028E|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.Q940E|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.Q533E|CRB1_uc001gub.1_Missense_Mutation_p.Q701E	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1052	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTCCAGGTGGCAAATGGAAGT	0.453000													11	275					0	0	0.387290	0	0
DYRK3	8444	broad.mit.edu	37	1	206822032	206822032	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:206822032G>A	uc001hej.2	+	3	1657	c.1489G>A	c.(1489-1491)GAG>AAG	p.E497K	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.E477K	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	497	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			CTTGTTTATAGAGTTCTTGAA	0.547000													12	319					0	0	0.411799	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220326745	220326745	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:220326745A>C	uc010puk.1	-	33	3813	c.3649T>G	c.(3649-3651)TTA>GTA	p.L1217V	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Missense_Mutation_p.L797V|RAB3GAP2_uc001hmh.2_Missense_Mutation_p.L161V	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	1217					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		ACTTTCAATAAGAACTTGAAA	0.408000													50	237					0	0	0.870114	0	0
PITRM1	10531	broad.mit.edu	37	10	3185639	3185639	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr10:3185639C>A	uc010qah.1	-	20	2325	c.2293G>T	c.(2293-2295)GTG>TTG	p.V765L	PITRM1_uc001igr.1_Missense_Mutation_p.V863L|PITRM1_uc001igs.1_5'UTR|PITRM1_uc001igt.1_Missense_Mutation_p.V863L|PITRM1_uc009xhv.1_Missense_Mutation_p.V429L|PITRM1_uc001igu.1_Missense_Mutation_p.V789L|PITRM1_uc010qai.1_Missense_Mutation_p.V834L|uc001igv.1_Intron			E7ES23	E7ES23_HUMAN	SubName: Full=cDNA FLJ54065, moderately similar to Mus musculus pitrilysin metallepetidase 1 (Pitrm1), mRNA;	765					proteolysis		metalloendopeptidase activity|zinc ion binding			pancreas(1)	1						ACGTAATTCACCGGGAAGGGC	0.592000													11	148					0.00829132	0.00835228	0.361761	1	0
C1QL3	389941	broad.mit.edu	37	10	16562659	16562659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr10:16562659G>A	uc001ioj.1	-	1	1346	c.406C>T	c.(406-408)CAG>TAG	p.Q136*		NM_001010908	NP_001010908	Q5VWW1	C1QL3_HUMAN	complement component 1, q subcomponent-like 3	136	C1q.					collagen				ovary(1)	1						CCTTCATGCTGCCGCTTGAGG	0.572000													9	162					0	0	0.361761	0	0
CCDC6	8030	broad.mit.edu	37	10	61552865	61552865	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr10:61552865G>A	uc001jks.3	-	9	1871	c.1235C>T	c.(1234-1236)CCT>CTT	p.P412L		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	412						cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		CCGTGGTGAAGGCCTCTGCAG	0.562000													8	83					0	0	0.307466	0	0
DLG5	9231	broad.mit.edu	37	10	79589222	79589222	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr10:79589222G>A	uc001jzk.2	-	12	2146	c.2076C>T	c.(2074-2076)ATC>ATT	p.I692I	DLG5_uc001jzj.2_Silent_p.I447I|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Silent_p.I296I	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	692	PDZ 1.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			GGAGCGCCTTGATGGCCTGCT	0.587000													16	425					0	0	0.520397	0	0
LOC399815	399815	broad.mit.edu	37	10	124647797	124647797	+	Missense_Mutation	SNP	A	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr10:124647797A>T	uc001lgu.3	+	7	1064	c.166A>T	c.(166-168)ATT>TTT	p.I56F	LOC399815_uc010qua.1_Missense_Mutation_p.I18F					RecName: Full=Putative uncharacterized C10orf88-like protein;												0						TTGTATTCCTATTGAAGAGCA	0.358000													6	101					0	0	0.278610	0	0
HBE1	3046	broad.mit.edu	37	11	5289744	5289744	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:5289744C>G	uc001mal.1	-	3	652	c.399G>C	c.(397-399)AAG>AAC	p.K133N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Missense_Mutation_p.K133N	NM_005330	NP_005321	P02100	HBE_HUMAN	epsilon globin	133					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.34e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGACACCAGCTTCTGCCAGG	0.532000													58	312					0	0	0.870114	0	0
SLC3A2	6520	broad.mit.edu	37	11	62648627	62648627	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:62648627G>C	uc001nwd.2	+	4	659	c.435G>C	c.(433-435)AAG>AAC	p.K145N	SLC3A2_uc001nwb.2_Missense_Mutation_p.K176N|SLC3A2_uc001nwc.2_Missense_Mutation_p.K146N|SLC3A2_uc001nwe.2_Missense_Mutation_p.K114N|SLC3A2_uc001nwf.2_Missense_Mutation_p.K83N|SLC3A2_uc001nwg.2_Missense_Mutation_p.K44N|SLC3A2_uc010rml.1_5'Flank	NM_002394	NP_002385	P08195	4F2_HUMAN	solute carrier family 3, member 2 isoform c	145	Cytoplasmic (Potential).				blood coagulation|carbohydrate metabolic process|cell growth|cellular nitrogen compound metabolic process|leucine import|leukocyte migration|tryptophan transport	apical plasma membrane|cell surface|integral to membrane|melanosome	calcium:sodium antiporter activity|catalytic activity|cation binding|neutral amino acid transmembrane transporter activity|protein binding				0						GTCTGGTGAAGATCAAGGTGG	0.657000											OREG0021031	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	18					0	0	0.115264	0	0
VEGFB	7423	broad.mit.edu	37	11	64005040	64005040	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:64005040A>C	uc001nyw.2	+	6	599	c.559A>C	c.(559-561)ACC>CCC	p.T187P	VEGFB_uc001nyx.2_Missense_Mutation_p.D153A	NM_003377	NP_003368	P49765	VEGFB_HUMAN	vascular endothelial growth factor B precursor	187					anti-apoptosis|induction of positive chemotaxis|negative regulation of gene expression|negative regulation of neuron apoptosis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular wound healing|vascular endothelial growth factor receptor signaling pathway	extracellular region|extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|heparin binding|vascular endothelial growth factor receptor 1 binding				0						CAGCGCCCTGACCCCCGGACC	0.706000													8	22					0	0	0.639603	0	0
CDCA5	113130	broad.mit.edu	37	11	64847203	64847203	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:64847203C>T	uc001ocp.2	-	5	465	c.300G>A	c.(298-300)GAG>GAA	p.E100E		NM_080668	NP_542399	Q96FF9	CDCA5_HUMAN	cell division cycle associated 5	100					cell division|double-strand break repair|G1/S transition of mitotic cell cycle|mitotic chromosome condensation|mitotic metaphase plate congression|mitotic sister chromatid cohesion|regulation of cohesin localization to chromatin	cytoplasm|nuclear chromatin|plasma membrane	chromatin binding|identical protein binding				0						TGAAAAGGTCCTCCTTAGTAA	0.567000													3	36					0	0	0.115264	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65351822	65351822	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:65351822C>G	uc001oeo.3	+	10	3469	c.3204C>G	c.(3202-3204)AAC>AAG	p.N1068K	EHBP1L1_uc001oep.1_Missense_Mutation_p.N88K	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	1068	CH.									central_nervous_system(1)	1						CCTGGCGCAACGGCTTGGCCT	0.622000													9	224					0	0	0.335167	0	0
CD248	57124	broad.mit.edu	37	11	66084240	66084240	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:66084240G>T	uc001ohm.1	-	1	276	c.259C>A	c.(259-261)CTG>ATG	p.L87M		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	87	C-type lectin.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	TGCCGCTGCAGCCCGATCCAC	0.731000													11	53					4.3838e-07	4.51564e-07	0.435327	1	0
CTSF	8722	broad.mit.edu	37	11	66331559	66331559	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:66331559C>T	uc001oip.2	-	12	1470	c.1380G>A	c.(1378-1380)AAG>AAA	p.K460K		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	460				SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV VD -> EFRCLSCIQPGHRQGWDHSISGPLEGK (in Ref. 9).	proteolysis	lysosome	cysteine-type endopeptidase activity				0						CAAGACTCACCTTCTCACCCC	0.612000													4	57					0	0	0.184627	0	0
ANKRD13D	338692	broad.mit.edu	37	11	67067334	67067334	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:67067334C>T	uc001okc.1	+	10	1167	c.656C>T	c.(655-657)GCG>GTG	p.A219V	ANKRD13D_uc001okd.1_Missense_Mutation_p.A306V|ANKRD13D_uc001oke.1_Missense_Mutation_p.A219V|ANKRD13D_uc001okg.1_Missense_Mutation_p.A2V|ANKRD13D_uc001okh.1_Missense_Mutation_p.A2V|ANKRD13D_uc001oki.1_5'Flank	NM_207354	NP_997237	Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	219										ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			CTGGGGATGGCGCAGCAGCAT	0.687000													15	161					0	0	0.520397	0	0
NCAM1	4684	broad.mit.edu	37	11	113105776	113105776	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:113105776C>A	uc009yyq.1	+	15	2133	c.1439C>A	c.(1438-1440)ACC>AAC	p.T480N		NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	572	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		GGCATCGTCACCATCGTGGGC	0.448000													4	19					0.00909568	0.009129	0.150653	1	0
MLL	4297	broad.mit.edu	37	11	118375783	118375783	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:118375783C>T	uc001pta.2	+	27	9190	c.9167C>T	c.(9166-9168)CCG>CTG	p.P3056L	MLL_uc001ptb.2_Missense_Mutation_p.P3059L	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	3056					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AGTCCTGGCCCGTCTCAGATT	0.507000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								15	428					0	0	0.479597	0	0
BSX	390259	broad.mit.edu	37	11	122850021	122850021	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:122850021G>C	uc010rzs.1	-	2	407	c.407C>G	c.(406-408)TCC>TGC	p.S136C		NM_001098169	NP_001091639	Q3C1V8	BSH_HUMAN	brain specific homeobox	136	Homeobox.										0		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0361)		TTCTGGCGTGGACAGGTAGCG	0.657000													16	253					0	0	0.479597	0	0
CACNA1C	775	broad.mit.edu	37	12	2760901	2760901	+	Silent	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:2760901G>C	uc009zdu.1	+	34	4498	c.4185G>C	c.(4183-4185)CGG>CGC	p.R1395R	CACNA1C_uc009zdv.1_Silent_p.R1344R|CACNA1C_uc001qkb.2_Silent_p.R1347R|CACNA1C_uc001qkc.2_Silent_p.R1347R|CACNA1C_uc001qke.2_Silent_p.R1336R|CACNA1C_uc001qkf.2_Silent_p.R1336R|CACNA1C_uc001qjz.2_Silent_p.R1347R|CACNA1C_uc001qkd.2_Silent_p.R1347R|CACNA1C_uc001qkg.2_Silent_p.R1334R|CACNA1C_uc009zdw.1_Silent_p.R1369R|CACNA1C_uc001qkh.2_Silent_p.R1336R|CACNA1C_uc001qkl.2_Silent_p.R1395R|CACNA1C_uc001qkn.2_Silent_p.R1347R|CACNA1C_uc001qko.2_Silent_p.R1367R|CACNA1C_uc001qkp.2_Silent_p.R1347R|CACNA1C_uc001qkr.2_Silent_p.R1364R|CACNA1C_uc001qku.2_Silent_p.R1347R|CACNA1C_uc001qkq.2_Silent_p.R1375R|CACNA1C_uc001qks.2_Silent_p.R1347R|CACNA1C_uc001qkt.2_Silent_p.R1347R|CACNA1C_uc001qki.1_Silent_p.R1083R|CACNA1C_uc001qkj.1_Silent_p.R1083R|CACNA1C_uc001qkk.1_Silent_p.R1083R|CACNA1C_uc001qkm.1_Silent_p.R1072R|CACNA1C_uc010sea.1_Silent_p.R38R	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1395	IV.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGGGCATCCGGACGCTGCTGT	0.637000													21	104					0	0	0.592651	0	0
CHD4	1108	broad.mit.edu	37	12	6692545	6692545	+	Splice_Site	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:6692545C>A	uc001qpo.2	-	26	4044	c.3880_splice	c.e26-1	p.E1294_splice	CHD4_uc001qpn.2_Splice_Site_p.E1287_splice|CHD4_uc001qpp.2_Splice_Site_p.E1291_splice|uc001qpq.1_3'UTR|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4						chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CCTCTTCCTCCTGGGACAGAG	0.532000													14	358					1.5842e-08	1.65676e-08	0.435327	1	0
KIAA1467	57613	broad.mit.edu	37	12	13219646	13219646	+	Missense_Mutation	SNP	G	A	A	rs145573782	by1000genomes	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:13219646G>A	uc001rbi.2	+	6	948	c.925G>A	c.(925-927)GTT>ATT	p.V309I	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	309						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		GTACAACATCGTTGGAGTTGG	0.507000													12	228					0	0	0.411799	0	0
SLC2A13	114134	broad.mit.edu	37	12	40499348	40499348	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:40499348G>A	uc010skm.1	-	1	314	c.263C>T	c.(262-264)TCC>TTC	p.S88F	SLC2A13_uc001rmf.2_Missense_Mutation_p.S88F	NM_052885	NP_443117	Q96QE2	MYCT_HUMAN	solute carrier family 2 (facilitated glucose	88	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	myo-inositol:hydrogen symporter activity			ovary(1)	1		Lung NSC(34;0.105)|all_lung(34;0.123)				GCCCAGCGCGGAGAAGACGGC	0.498000										HNSCC(50;0.14)			4	15					0	0	0.184627	0	0
ARID2	196528	broad.mit.edu	37	12	46245520	46245520	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:46245520G>C	uc001ros.1	+	15	3614	c.3614G>C	c.(3613-3615)GGA>GCA	p.G1205A	ARID2_uc001ror.2_Missense_Mutation_p.G1205A|ARID2_uc009zkg.1_Missense_Mutation_p.G661A|ARID2_uc009zkh.1_Missense_Mutation_p.G832A|ARID2_uc001rou.1_Missense_Mutation_p.G539A	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1205					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		ACCATGAGCGGAACGCAGACA	0.483000													27	145					0	0	0.667858	0	0
Unknown	0	broad.mit.edu	37	12	63359310	63359310	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:63359310G>A	uc001srn.1	+	1	211	c.206G>A	c.(205-207)CGC>CAC	p.R69H						SubName: Full=Putative uncharacterized protein RPL14P1;																		CACAGTGCCCGCCAAAAGTAT	0.512000													10	157					0	0	0.681144	0	0
Unknown	0	broad.mit.edu	37	12	63359314	63359314	+	Silent	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:63359314A>G	uc001srn.1	+	1	215	c.210A>G	c.(208-210)CAA>CAG	p.Q70Q						SubName: Full=Putative uncharacterized protein RPL14P1;																		GTGCCCGCCAAAAGTATGTCC	0.507000													9	161					0	0	0.681144	0	0
Unknown	0	broad.mit.edu	37	12	63359457	63359457	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:63359457C>T	uc001srn.1	+	1	358	c.353C>T	c.(352-354)ACG>ATG	p.T118M						SubName: Full=Putative uncharacterized protein RPL14P1;																		GCAAAGAAAACGAGGAACAGA	0.398000													37	171					0	0	0.804634	0	0
Unknown	0	broad.mit.edu	37	12	63359671	63359671	+	Silent	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:63359671A>G	uc001srn.1	+	1	572	c.567A>G	c.(565-567)GCA>GCG	p.A189A						SubName: Full=Putative uncharacterized protein RPL14P1;																		AGAAAGCAGCACCTGCTCCAA	0.468000													4	77					0	0	0.184627	0	0
TDG	6996	broad.mit.edu	37	12	104373759	104373759	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr12:104373759G>A	uc001tkg.2	+	3	540	c.317G>A	c.(316-318)AGA>AAA	p.R106K	TDG_uc010swh.1_Missense_Mutation_p.R106K|TDG_uc009zuk.2_Missense_Mutation_p.R102K|TDG_uc010swi.1_5'UTR|TDG_uc010swj.1_5'UTR	NM_003211	NP_003202	Q13569	TDG_HUMAN	thymine-DNA glycosylase	106					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			ovary(3)|lung(3)	6				BRCA - Breast invasive adenocarcinoma(302;0.00114)		AAAGTAAAAAGAAAAGTAGAC	0.353000								BER_DNA_glycosylases					17	204					0	0	0.520397	0	0
ATP5EP2	432369	broad.mit.edu	37	13	28519461	28519461	+	RNA	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr13:28519461T>C	uc001uru.2	+	1		c.119T>C				NR_002162				Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 (ATP5EP2), transcript variant 6, non-coding RNA.											ovary(1)	1						TGTGCAAAAGTAGTGAGAGAT	0.478000													5	82					0	0	0.184627	0	0
ATP5EP2	432369	broad.mit.edu	37	13	28519580	28519580	+	RNA	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr13:28519580G>A	uc001uru.2	+	1		c.238G>A				NR_002162				Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 (ATP5EP2), transcript variant 6, non-coding RNA.											ovary(1)	1						TTGAAATGCTGCATTTCCAAG	0.358000													6	13					0	0	0.217242	0	0
ATP5EP2	432369	broad.mit.edu	37	13	28519601	28519601	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr13:28519601A>G	uc001uru.2	+	1		c.259A>G				NR_002162				Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 (ATP5EP2), transcript variant 6, non-coding RNA.											ovary(1)	1						GTGAAGATGTATGGGCACATG	0.343000													6	9					0	0	0.217242	0	0
ZIC5	85416	broad.mit.edu	37	13	100617947	100617947	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr13:100617947T>A	uc001vom.1	-	2	1925	c.1676A>T	c.(1675-1677)GAC>GTC	p.D559V		NM_033132	NP_149123	Q96T25	ZIC5_HUMAN	zinc finger protein of the cerebellum 5	559	C2H2-type 4.				cell differentiation	nucleus	DNA binding|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					GTAGGATTTGTCACAGCCTCG	0.522000													67	211					0	0	0.870114	0	0
CHD8	57680	broad.mit.edu	37	14	21861651	21861651	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr14:21861651C>T	uc001was.1	-	32	5560	c.5466G>A	c.(5464-5466)GAG>GAA	p.E1822E	CHD8_uc001war.1_Silent_p.E1718E|SNORD9_uc001wat.1_5'Flank	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	2101					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TCTCTTCCTTCTCATCCTCAC	0.498000													3	20					0	0	0.115264	0	0
NFKBIA	4792	broad.mit.edu	37	14	35873637	35873637	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr14:35873637C>G	uc001wtf.3	-	1	324	c.214G>C	c.(214-216)GAG>CAG	p.E72Q	NFKBIA_uc001wte.3_5'Flank|NFKBIA_uc001wtg.3_Missense_Mutation_p.E72Q|NFKBIA_uc010amo.2_RNA	NM_020529	NP_065390	P25963	IKBA_HUMAN	nuclear factor of kappa light polypeptide gene	72					anti-apoptosis|apoptosis|cellular response to cold|cytoplasmic sequestering of NF-kappaB|innate immune response|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of DNA binding|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of NF-kappaB transcription factor activity|nerve growth factor receptor signaling pathway|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|I-kappaB/NF-kappaB complex|nucleus|plasma membrane	identical protein binding|NF-kappaB binding|nuclear localization sequence binding|ubiquitin protein ligase binding			breast(2)	2	Breast(36;0.0484)|Hepatocellular(127;0.158)		Lung(238;9.25e-06)|LUAD - Lung adenocarcinoma(48;1.53e-05)|Epithelial(34;0.00314)|all cancers(34;0.00891)	GBM - Glioblastoma multiforme(112;0.0222)		TCCCCGTCCTCGGTGAGCTGC	0.741000													10	41					0	0	0.335167	0	0
TRMT61A	115708	broad.mit.edu	37	14	103996579	103996579	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr14:103996579C>T	uc001yng.2	+	2	383	c.264C>T	c.(262-264)TAC>TAT	p.Y88Y	TRMT61A_uc010aws.2_Intron	NM_152307	NP_689520	Q96FX7	TRM61_HUMAN	tRNA(m1A58)-methyltransferase subunit TRM61	88						nucleus	protein binding|tRNA (adenine-N1-)-methyltransferase activity				0						AGATCCTCTACTCCACAGACA	0.622000													48	225					0	0	0.870114	0	0
DPP8	54878	broad.mit.edu	37	15	65793003	65793003	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr15:65793003G>A	uc002aov.2	-	4	2113	c.535C>T	c.(535-537)CTG>TTG	p.L179L	DPP8_uc002aow.2_Silent_p.L179L|DPP8_uc010uiv.1_RNA|DPP8_uc002aox.2_Silent_p.L163L|DPP8_uc002aoy.2_Silent_p.L179L|DPP8_uc002aoz.2_Silent_p.L163L|DPP8_uc010bhj.2_Silent_p.L179L|DPP8_uc002apa.2_Silent_p.L76L	NM_130434	NP_569118	Q6V1X1	DPP8_HUMAN	dipeptidyl peptidase 8 isoform 1	179					immune response|proteolysis	cytoplasm|membrane|nucleus	aminopeptidase activity|dipeptidyl-peptidase activity|serine-type peptidase activity			ovary(1)	1						GCTTGAAACAGAAATGTTCCA	0.403000													65	496					0	0	0.870114	0	0
ADPGK	83440	broad.mit.edu	37	15	73045100	73045100	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr15:73045100A>G	uc002avg.3	-	7	1170	c.1076T>C	c.(1075-1077)CTC>CCC	p.L359P	ADPGK_uc002ave.3_Missense_Mutation_p.L84P|ADPGK_uc010ukw.1_Missense_Mutation_p.L301P|ADPGK_uc002avf.3_Missense_Mutation_p.L358P|ADPGK_uc002avi.3_Missense_Mutation_p.L236P|ADPGK_uc002avh.3_Missense_Mutation_p.L120P	NM_031284	NP_112574	Q9BRR6	ADPGK_HUMAN	ADP-dependent glucokinase	359	ADPK.				glycolysis	extracellular region	ADP-specific glucokinase activity|metal ion binding				0						GATCCAGAAGAGGATGTCACT	0.517000													47	250					0	0	0.870114	0	0
SPG7	6687	broad.mit.edu	37	16	89611106	89611106	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr16:89611106G>A	uc002fnj.2	+	10	1396	c.1375G>A	c.(1375-1377)GAC>AAC	p.D459N	SPG7_uc002fnk.1_RNA	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	459	Mitochondrial matrix (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		GAACCGAGCTGACATTTTGGA	0.602000													39	223					0	0	0.859065	0	0
SPATA2L	124044	broad.mit.edu	37	16	89764126	89764126	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr16:89764126C>T	uc002foj.2	-	3	956	c.891G>A	c.(889-891)GAG>GAA	p.E297E	SPATA2L_uc002fok.2_Intron	NM_152339	NP_689552	Q8IUW3	SPA2L_HUMAN	spermatogenesis associated 2-like	297											0		Lung NSC(15;0.00043)|all_lung(18;0.000665)|all_hematologic(23;0.0355)		BRCA - Breast invasive adenocarcinoma(80;0.0272)		CCAGCCCCTCCTCCAAGGCCC	0.682000													8	45					0	0	0.278610	0	0
ITGAE	3682	broad.mit.edu	37	17	3661083	3661083	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:3661083C>A	uc002fwo.3	-	9	1036	c.937G>T	c.(937-939)GGT>TGT	p.G313C		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	313	VWFA.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		AATATGCCACCATCGGTGAGC	0.542000													90	512					4.21487e-37	4.73309e-37	0.870114	1	0
DNAH9	1770	broad.mit.edu	37	17	11650939	11650939	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:11650939G>A	uc002gne.2	+	32	6534	c.6466G>A	c.(6466-6468)GGC>AGC	p.G2156S	DNAH9_uc010coo.2_Missense_Mutation_p.G1450S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2156	AAA 2 (By similarity).|ATP (Potential).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CGCTGGTACCGGCAAGTCACA	0.572000													27	208					0	0	0.693898	0	0
Unknown	0	broad.mit.edu	37	17	19349763	19349763	+	RNA	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:19349763G>A	uc002gvw.2	-	1		c.416C>T								Homo sapiens mRNA for ribosomal protein S2, partial cds.																		CGACGTGGCCGTTGTAGTCCC	0.597000													10	69					0	0	0.592651	0	0
TAOK1	57551	broad.mit.edu	37	17	27857472	27857472	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:27857472C>T	uc002hdz.1	+	18	2390	c.2196C>T	c.(2194-2196)ATC>ATT	p.I732I	TAOK1_uc010wbe.1_Silent_p.I584I|TAOK1_uc010wbf.1_Silent_p.I732I	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	732					mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			CCTGCAAAATCCAAACCAGAC	0.393000													18	125					0	0	0.539581	0	0
KRT39	390792	broad.mit.edu	37	17	39114945	39114945	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:39114945A>G	uc002hvo.1	-	7	1420	c.1384T>C	c.(1384-1386)TGC>CGC	p.C462R	KRT39_uc010wfm.1_Missense_Mutation_p.C195R	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	462	Tail.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				GTGATGGTGCAAATTTTAACC	0.507000													12	313					0	0	0.411799	0	0
KLHL11	55175	broad.mit.edu	37	17	40010103	40010103	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:40010103G>A	uc002hyf.1	-	2	2022	c.2016C>T	c.(2014-2016)TAC>TAT	p.Y672Y		NM_018143	NP_060613	Q9NVR0	KLH11_HUMAN	kelch-like 11 precursor	672						extracellular region					0		Breast(137;0.00156)				GAGGCATAGGGTATCTCTGTG	0.527000													57	346					0	0	0.870114	0	0
C17orf47	284083	broad.mit.edu	37	17	56620313	56620313	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:56620313G>T	uc002iwq.1	-	1	1371	c.1235C>A	c.(1234-1236)CCC>CAC	p.P412H	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	412										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AGGAGGCAAGGGCCTAGGGGT	0.547000													31	311					1.06801e-11	1.14311e-11	0.740014	1	0
NACA2	342538	broad.mit.edu	37	17	59668536	59668536	+	Silent	SNP	C	G	G	rs112308210		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:59668536C>G	uc002izj.2	-	1	32	c.6G>C	c.(4-6)CCG>CCC	p.P2P		NM_199290	NP_954984	Q9H009	NACA2_HUMAN	nascent-polypeptide-associated complex alpha	2					protein transport	cytoplasm|nucleus				ovary(1)	1	all_epithelial(1;3.12e-14)					TGGCTTCGCCCGGCATTTTGT	0.577000													12	224					0	0	0.411799	0	0
MAP2K6	5608	broad.mit.edu	37	17	67522730	67522730	+	Missense_Mutation	SNP	G	T	T	rs146595343	byFrequency	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:67522730G>T	uc002jij.2	+	10	1049	c.761G>T	c.(760-762)CGA>CTA	p.R254L		NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	254	Protein kinase.				activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					GCCATCCTTCGATTTCCCTAT	0.463000													38	301					2.24893e-16	2.4356e-16	0.847076	1	0
FASN	2194	broad.mit.edu	37	17	80049208	80049208	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:80049208G>A	uc002kdu.2	-	9	1499	c.1382C>T	c.(1381-1383)CCC>CTC	p.P461L	FASN_uc002kdw.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	461	Acyl and malonyl transferases (By similarity).			AVPA -> LSPT (in Ref. 2; AAA73576).	energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GGCGGTGGCGGGGACAGCCGC	0.701000													5	45					0	0	0.217242	0	0
RAB12	201475	broad.mit.edu	37	18	8609872	8609872	+	Silent	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr18:8609872C>A	uc002knp.2	+	1	430	c.147C>A	c.(145-147)GGC>GGA	p.G49G	RAB12_uc002kno.1_Silent_p.G145G	NM_001025300	NP_001020471	Q6IQ22	RAB12_HUMAN	RAB12, member RAS oncogene family	49	GTP.				protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding				0						TCATTATCGGCTCCCGCGGCG	0.652000													9	46					4.68919e-08	4.84844e-08	0.361761	1	0
DYM	54808	broad.mit.edu	37	18	46783384	46783384	+	Missense_Mutation	SNP	T	A	A	rs61758455		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr18:46783384T>A	uc002ldi.1	-	13	1821	c.1456A>T	c.(1456-1458)ATC>TTC	p.I486F	DYM_uc010xdf.1_Missense_Mutation_p.I296F|DYM_uc002ldj.3_Missense_Mutation_p.I308F|DYM_uc010dov.1_Missense_Mutation_p.I36F	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	486						Golgi apparatus					0						ATTTACCTGATGATCCTCTGG	0.403000													24	121					0	0	0.667858	0	0
ZNF556	80032	broad.mit.edu	37	19	2877458	2877458	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:2877458G>A	uc002lwp.1	+	4	589	c.502G>A	c.(502-504)GCT>ACT	p.A168T	ZNF556_uc002lwq.2_Missense_Mutation_p.A167T	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	168	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCACAAAAGAGCTCACTCTGG	0.438000													58	262					0	0	0.870114	0	0
PRR22	163154	broad.mit.edu	37	19	5783339	5783339	+	Missense_Mutation	SNP	A	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:5783339A>T	uc002mdb.1	-	1	1272	c.913T>A	c.(913-915)TGC>AGC	p.C305S	PRR22_uc010xiv.1_Missense_Mutation_p.C307S	NM_153359	NP_699190	Q8IZ63	PRR22_HUMAN	proline rich 22 isoform 2	305											0						GGGACCTCGCACAGGGTACCC	0.642000													19	145					0	0	0.575678	0	0
C19orf59	199675	broad.mit.edu	37	19	7743463	7743463	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:7743463A>G	uc002mhh.1	+	5	485	c.460A>G	c.(460-462)ATT>GTT	p.I154V	TRAPPC5_uc002mhi.1_5'Flank|TRAPPC5_uc002mhj.1_5'Flank|TRAPPC5_uc002mhk.1_5'Flank	NM_174918	NP_777578	Q8IX19	MCEM1_HUMAN	mast cell-expressed membrane protein 1	154	Extracellular (Potential).					integral to membrane				skin(1)	1						CAGGAGCAAGATTGATAGATT	0.522000											OREG0025208	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	140					0	0	0.740014	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8661292	8661292	+	Silent	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:8661292C>A	uc002mkj.1	-	10	1363	c.1089G>T	c.(1087-1089)CTG>CTT	p.L363L	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	363	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CCACCGGGGCCAGGCCTGGGA	0.657000													6	69					8.12818e-05	8.27927e-05	0.248553	1	0
WDR83	84292	broad.mit.edu	37	19	12786384	12786384	+	Silent	SNP	G	A	A	rs142130654	by1000genomes	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:12786384G>A	uc002mue.3	+	11	1181	c.846G>A	c.(844-846)TCG>TCA	p.S282S	WDR83_uc002muc.2_RNA|WDR83_uc010dyw.2_Silent_p.S282S	NM_001099737	NP_001093207	Q9BRX9	WDR83_HUMAN	mitogen-activated protein kinase organizer 1	282	WD 7.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|cytoplasm				lung(1)|breast(1)	2						TGGTGCAGTCGCTGGCCTACC	0.657000											OREG0025272	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	129					0	0	0.592651	0	0
MYO9B	4650	broad.mit.edu	37	19	17311139	17311139	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:17311139G>C	uc010eak.2	+	25	4428	c.4276G>C	c.(4276-4278)GAT>CAT	p.D1426H	MYO9B_uc002nfi.2_Missense_Mutation_p.D1426H|MYO9B_uc002nfj.1_Missense_Mutation_p.D1426H|MYO9B_uc002nfl.1_5'UTR	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1426	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						TAAAACCAAGGATAAAAAATA	0.507000													9	70					0	0	0.307466	0	0
ZNF90	7643	broad.mit.edu	37	19	20236115	20236115	+	RNA	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:20236115C>T	uc002nos.1	+	5		c.791C>T			ZNF90_uc002not.1_RNA			Q03938	ZNF90_HUMAN	Synthetic construct DNA, clone: pF1KB9685, Homo sapiens ZNF90 gene for zinc finger protein 90, without stop codon, in Flexi system.							Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CGTCAGTCCACCTCCAAAGCC	0.522000													5	100					0	0	0.248553	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010155	24010155	+	Silent	SNP	T	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:24010155T>A	uc002nrn.2	+	4	615	c.192T>A	c.(190-192)GCT>GCA	p.A64A		NM_002295	NP_002286			ribosomal protein SA												0						CAGCTCGTGCTATTGTTGCCA	0.473000													9	103					0	0	0.479597	0	0
LSM14A	26065	broad.mit.edu	37	19	34685499	34685499	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:34685499C>T	uc002nvb.3	+	2	434	c.238C>T	c.(238-240)CCA>TCA	p.P80S	LSM14A_uc002nva.3_Missense_Mutation_p.P80S|LSM14A_uc010xru.1_Missense_Mutation_p.P80S	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	80					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					TGTTTGTGAGCCACCAAAACC	0.438000													52	392					0	0	0.870114	0	0
MAP3K10	4294	broad.mit.edu	37	19	40711993	40711993	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:40711993G>A	uc002ona.2	+	5	1652	c.1364G>A	c.(1363-1365)CGC>CAC	p.R455H	MAP3K10_uc002onb.2_Intron	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	455	Arg/Lys-rich (basic).				activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						GTCCGCAAGCGCAAGGGCAAC	0.672000													19	70					0	0	0.539581	0	0
BCKDHA	593	broad.mit.edu	37	19	41884321	41884321	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:41884321G>C	uc002oqm.3	+	2	458	c.107G>C	c.(106-108)AGA>ACA	p.R36T	CYP2F1_uc010xvw.1_Intron|TMEM91_uc002oqi.2_Missense_Mutation_p.R36T|TMEM91_uc010ehq.2_Missense_Mutation_p.R36T|TMEM91_uc002oql.2_Missense_Mutation_p.R36T|TMEM91_uc010ehr.2_Missense_Mutation_p.R36T|TMEM91_uc010ehs.2_Missense_Mutation_p.R36T|TMEM91_uc010eht.2_Missense_Mutation_p.R36T|TMEM91_uc002oqk.3_Missense_Mutation_p.R36T|TMEM91_uc002oqn.2_Missense_Mutation_p.R36T	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	Error:Variant_position_missing_in_P12694_after_alignment					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						TCCCCCTTAAGAGAGATAGCC	0.612000													20	323					0	0	0.608945	0	0
BCAM	4059	broad.mit.edu	37	19	45315574	45315574	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:45315574A>C	uc002ozu.2	+	3	403	c.359A>C	c.(358-360)GAG>GCG	p.E120A	BCAM_uc002ozt.1_Missense_Mutation_p.E120A	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	120	Extracellular (Potential).|Ig-like V-type 1.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GTGGGCGACGAGCGAGACTAC	0.682000													8	121					0	0	0.278610	0	0
ZNF615	284370	broad.mit.edu	37	19	52497760	52497760	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:52497760T>C	uc002pye.1	-	6	861	c.569A>G	c.(568-570)CAG>CGG	p.Q190R	ZNF615_uc002pyf.1_Missense_Mutation_p.Q201R|ZNF615_uc002pyg.1_Missense_Mutation_p.Q82R|ZNF615_uc002pyh.1_Missense_Mutation_p.Q201R|ZNF615_uc010epi.1_Missense_Mutation_p.Q197R|ZNF615_uc010ydg.1_Missense_Mutation_p.Q195R	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		CTTAATGAACTGGGACTTATT	0.363000													78	559					0	0	0.870114	0	0
NLRP5	126206	broad.mit.edu	37	19	56565133	56565133	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:56565133C>T	uc002qmj.2	+	13	3258	c.3258C>T	c.(3256-3258)TGC>TGT	p.C1086C	NLRP5_uc002qmi.2_Silent_p.C1067C	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1086	LRR 12.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTGCGCTGTGCGAGGGACTGA	0.622000													20	164					0	0	0.575678	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701318	56701318	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:56701318C>T	uc010ygh.1	-	4	1366	c.1366G>A	c.(1366-1368)GTT>ATT	p.V456I		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	456	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CGCTGGTGAACGTTCAGGTTC	0.537000													8	134					0	0	0.307466	0	0
PLB1	151056	broad.mit.edu	37	2	28849295	28849295	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:28849295G>T	uc002rmb.1	+	51	3580	c.3580G>T	c.(3580-3582)GAC>TAC	p.D1194Y	PLB1_uc010ezj.1_Missense_Mutation_p.D1183Y|PLB1_uc002rme.1_Missense_Mutation_p.D159Y|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1194	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GTCCCCTCAGGACATCAACCT	0.547000													18	144					2.94398e-08	3.0555e-08	0.557998	1	0
MYADML	151325	broad.mit.edu	37	2	33952621	33952621	+	Silent	SNP	G	A	A	rs11684598	by1000genomes	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:33952621G>A	uc002rpb.2	-	1	664	c.222C>T	c.(220-222)TAC>TAT	p.Y74Y		NR_003143				RecName: Full=Myeloid-associated differentiation marker-like protein.;												0						CTTCGGTGGCGTAAGCCACAC	0.647000													5	84					0	0	0.184627	0	0
Unknown	0	broad.mit.edu	37	2	38709067	38709067	+	Silent	SNP	A	G	G	rs113173138		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:38709067A>G	uc002rqu.1	+	1	142	c.75A>G	c.(73-75)CCA>CCG	p.P25P						SubName: Full=RPLP0 protein;																		ATGATTATCCAAAATGTTTCA	0.537000													22	79					0	0	0.624587	0	0
Unknown	0	broad.mit.edu	37	2	38709079	38709079	+	Silent	SNP	C	T	T	rs111340107		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:38709079C>T	uc002rqu.1	+	1	154	c.87C>T	c.(85-87)ATC>ATT	p.I29I						SubName: Full=RPLP0 protein;																		AATGTTTCATCGTGGGAGCAG	0.537000													19	102					0	0	0.575678	0	0
Unknown	0	broad.mit.edu	37	2	38709144	38709145	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:38709144_38709145TC>CT	uc002rqu.1	+	1	219_220	c.152_153TC>CT	c.(151-153)GTC>GCT	p.V51A						SubName: Full=RPLP0 protein;																		CGCGGGAAGGTCGTGGTGCTGA	0.535000													11	206					0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	2	38709239	38709239	+	Missense_Mutation	SNP	T	C	C	rs112834477		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:38709239T>C	uc002rqu.1	+	1	314	c.247T>C	c.(247-249)TGG>CGG	p.W83R						SubName: Full=RPLP0 protein;																		GCCTCATATCTGGGGGAATGT	0.567000													55	199					0	0	0.870114	0	0
Unknown	0	broad.mit.edu	37	2	38709678	38709678	+	Silent	SNP	C	T	T	rs148735877	by1000genomes	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:38709678C>T	uc002rqu.1	+	2	568	c.501C>T	c.(499-501)GAC>GAT	p.D167D						SubName: Full=RPLP0 protein;																		TGTCTGCAGACTGGCTACCCA	0.512000													38	155					0	0	0.864702	0	0
EML4	27436	broad.mit.edu	37	2	42511790	42511790	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:42511790G>T	uc002rsi.2	+	9	1220	c.958G>T	c.(958-960)GAC>TAC	p.D320Y	EML4_uc010fap.2_Missense_Mutation_p.D262Y|EML4_uc002rsj.2_5'Flank	NM_019063	NP_061936	Q9HC35	EMAL4_HUMAN	echinoderm microtubule associated protein like 4	320	WD 1.				microtubule-based process|mitosis	cytoplasm|microtubule	protein binding		EML4/ALK(246)	lung(246)|ovary(2)|central_nervous_system(1)|skin(1)	250						TATACATCCTGACAAAATTAG	0.378000			T	ALK	NSCLC								30	189					5.91797e-21	6.56487e-21	0.760397	1	0
BCL11A	53335	broad.mit.edu	37	2	60688255	60688255	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:60688255C>A	uc002sae.1	-	4	2020	c.1792G>T	c.(1792-1794)GAC>TAC	p.D598Y	BCL11A_uc002sab.2_Missense_Mutation_p.D598Y|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.D267Y|BCL11A_uc010ypj.1_Missense_Mutation_p.D564Y|BCL11A_uc002sad.1_Missense_Mutation_p.D446Y|BCL11A_uc002saf.1_Missense_Mutation_p.D564Y	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	598					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GTGCCATCGTCTATGCGGTCC	0.697000			T	IGH@	B-CLL								17	97					2.35188e-11	2.50745e-11	0.539581	1	0
SNRNP27	11017	broad.mit.edu	37	2	70123654	70123654	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:70123654C>A	uc002sfw.2	+	3	269	c.242C>A	c.(241-243)ACA>AAA	p.T81K	SNRNP27_uc002sfv.2_RNA|SNRNP27_uc002sfx.2_Missense_Mutation_p.T81K	NM_006857	NP_006848	Q8WVK2	SNR27_HUMAN	small nuclear ribonucleoprotein 27kDa	81			T -> I.		mRNA processing|RNA splicing	nucleus	nucleic acid binding				0						acaaaagaaacaaagaGCAAA	0.249000													7	144					8.12818e-05	8.27927e-05	0.248553	1	0
FOXI3	344167	broad.mit.edu	37	2	88751603	88751603	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:88751603G>A	uc010ytq.1	-	2	452	c.452C>T	c.(451-453)TCG>TTG	p.S151L		NM_001135649	NP_001129121	A8MTJ6	FOXI3_HUMAN	forkhead box I3	151	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						GATGAGCGCCGAATACGAGTA	0.532000													5	17					0	0	0.184627	0	0
ZNF514	84874	broad.mit.edu	37	2	95815575	95815575	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:95815575G>T	uc002sue.1	-	5	1029	c.655C>A	c.(655-657)CTT>ATT	p.L219I	ZNF514_uc002sud.1_Missense_Mutation_p.L292I	NM_032788	NP_116177	Q96K75	ZN514_HUMAN	zinc finger protein 514	219	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGCGCCTAAGTTCTGACTGG	0.443000													20	458					1.36565e-18	1.49675e-18	0.639603	1	0
EDAR	10913	broad.mit.edu	37	2	109524464	109524464	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:109524464G>A	uc002teq.3	-	10	1246	c.815C>T	c.(814-816)GCC>GTC	p.A272V	EDAR_uc010fjn.2_Missense_Mutation_p.A304V|EDAR_uc010yws.1_Missense_Mutation_p.A304V	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	272	Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						CTCGGATGAGGCATCGTTCTC	0.607000													11	85					0	0	0.411799	0	0
ZRANB3	84083	broad.mit.edu	37	2	135988368	135988368	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:135988368T>C	uc002tum.2	-	13	1786	c.1669A>G	c.(1669-1671)ACA>GCA	p.T557A	ZRANB3_uc002tuk.2_Missense_Mutation_p.T100A|ZRANB3_uc002tul.2_Missense_Mutation_p.T557A	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	557						intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		GCTGTTTTTGTAGGGTCTGAT	0.413000													27	258					0	0	0.729181	0	0
ARHGAP15	55843	broad.mit.edu	37	2	143959733	143959733	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:143959733C>T	uc002tvm.3	+	3	347	c.196C>T	c.(196-198)CAT>TAT	p.H66Y	ARHGAP15_uc010zbl.1_Missense_Mutation_p.H66Y	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	66					regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		TCATTCACAGCATATCTTGAA	0.244000													47	225					0	0	0.870114	0	0
KCNH7	90134	broad.mit.edu	37	2	163228571	163228571	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:163228571A>G	uc002uch.1	-	16	3571	c.3359T>C	c.(3358-3360)CTT>CCT	p.L1120P		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	1120	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TTTGGATTTAAGTTTAGATTT	0.333000													5	106					0	0	0.217242	0	0
MYO3B	140469	broad.mit.edu	37	2	171323216	171323216	+	Silent	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:171323216G>C	uc002ufy.2	+	25	3152	c.3009G>C	c.(3007-3009)GTG>GTC	p.V1003V	MYO3B_uc002ufv.2_Silent_p.V990V|MYO3B_uc010fqb.1_Silent_p.V990V|MYO3B_uc002ufz.2_Silent_p.V1003V|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_Intron	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	1003	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						AAGAATTTGTGAAAAGGTCAG	0.532000													38	200					0	0	0.812448	0	0
Unknown	0	broad.mit.edu	37	2	190788135	190788135	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:190788135C>T	uc002uro.2	+	1	217	c.74C>T	c.(73-75)ACT>ATT	p.T25I						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		AATCTCAACACTCTTGTGGTC	0.433000													55	380					0	0	0.870114	0	0
STK4	6789	broad.mit.edu	37	20	43703783	43703783	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr20:43703783T>A	uc002xnb.2	+	11	1520	c.1430T>A	c.(1429-1431)ATA>AAA	p.I477K	STK4_uc010ggx.2_3'UTR|STK4_uc010ggy.2_Missense_Mutation_p.I422K	NM_006282	NP_006273	Q13043	STK4_HUMAN	serine/threonine kinase 4	477	SARAH.				apoptosis|cell morphogenesis|hippo signaling cascade|intracellular protein kinase cascade|negative regulation of canonical Wnt receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of apoptosis|protein autophosphorylation	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein homodimerization activity|protein serine/threonine kinase activator activity|protein serine/threonine kinase activity|transcription factor binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				CTGGATGCCATAGAGGCTAAG	0.572000													8	125					0	0	0.307466	0	0
STK4	6789	broad.mit.edu	37	20	43703792	43703792	+	Missense_Mutation	SNP	A	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr20:43703792A>T	uc002xnb.2	+	11	1529	c.1439A>T	c.(1438-1440)AAG>ATG	p.K480M	STK4_uc010ggx.2_3'UTR|STK4_uc010ggy.2_Missense_Mutation_p.K425M	NM_006282	NP_006273	Q13043	STK4_HUMAN	serine/threonine kinase 4	480	SARAH.				apoptosis|cell morphogenesis|hippo signaling cascade|intracellular protein kinase cascade|negative regulation of canonical Wnt receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of apoptosis|protein autophosphorylation	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein homodimerization activity|protein serine/threonine kinase activator activity|protein serine/threonine kinase activity|transcription factor binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				ATAGAGGCTAAGAAGAGACGG	0.562000													8	119					0	0	0.307466	0	0
SLC17A9	63910	broad.mit.edu	37	20	61591929	61591929	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr20:61591929C>T	uc002yea.3	+	4	655	c.471C>T	c.(469-471)AGC>AGT	p.S157S	SLC17A9_uc002ydz.3_Silent_p.S151S|SLC17A9_uc011aap.1_Silent_p.S177S	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	157					exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						TCACCTACAGCATCGTGGGCG	0.652000													8	82					0	0	0.387290	0	0
OPRL1	4987	broad.mit.edu	37	20	62729444	62729444	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr20:62729444T>A	uc002yic.2	+	4	925	c.523T>A	c.(523-525)TGG>AGG	p.W175R	OPRL1_uc002yid.2_Missense_Mutation_p.W175R|OPRL1_uc002yif.3_Missense_Mutation_p.W170R	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	175	Helical; Name=4; (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					TGTGGCCATCTGGGCCCTGGC	0.627000													25	250					0	0	0.706142	0	0
LSS	4047	broad.mit.edu	37	21	47614458	47614458	+	Silent	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr21:47614458G>T	uc002zij.2	-	20	2014	c.1935C>A	c.(1933-1935)GCC>GCA	p.A645A	LSS_uc011afv.1_Silent_p.A634A|LSS_uc002zil.2_Silent_p.A645A|LSS_uc002zik.2_Silent_p.A565A	NM_001001438	NP_001001438	P48449	ERG7_HUMAN	lanosterol synthase isoform 1	645	PFTB 4.				cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity				0	Breast(49;0.214)					TCTGGGACTGGGCACTCTGCA	0.632000													24	85					6.21321e-17	6.75563e-17	0.639603	1	0
C3orf31	132001	broad.mit.edu	37	3	11851103	11851103	+	Silent	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr3:11851103G>C	uc003bwh.2	-	6	1004	c.762C>G	c.(760-762)ACC>ACG	p.T254T	C3orf31_uc003bwj.2_Silent_p.T254T|C3orf31_uc003bwi.2_RNA|C3orf31_uc011auo.1_Silent_p.T254T	NM_138807	NP_620162	Q96BW9	MMP37_HUMAN	MMP37-like protein, mitochondrial precursor	254					protein import into mitochondrial matrix	extrinsic to mitochondrial inner membrane					0						GTTGCTGTAAGGTTTTGGGCA	0.418000													18	299					0	0	0.575678	0	0
NEK10	152110	broad.mit.edu	37	3	27297832	27297832	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr3:27297832T>C	uc003cdt.1	-	24	2319	c.2045A>G	c.(2044-2046)GAA>GGA	p.E682G	NEK10_uc003cds.1_Missense_Mutation_p.E79G	NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	682	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						TTTACTGTTTTCTTGTTTTTG	0.358000													10	80					0	0	0.411799	0	0
EOMES	8320	broad.mit.edu	37	3	27759190	27759190	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr3:27759190C>A	uc003cdx.2	-	6	1432	c.1432G>T	c.(1432-1434)GAG>TAG	p.E478*	EOMES_uc003cdy.3_Nonsense_Mutation_p.E497*|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Nonsense_Mutation_p.E202*	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	478					CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						ACAAAGGGCTCCGGGAAGAAG	0.527000													22	256					2.89027e-11	3.06951e-11	0.624587	1	0
LARS2	23395	broad.mit.edu	37	3	45533136	45533136	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr3:45533136G>A	uc003cop.1	+	13	1552	c.1367G>A	c.(1366-1368)GGC>GAC	p.G456D	LARS2_uc010hit.1_Missense_Mutation_p.G413D	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	456					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	CGGTACTGGGGCACACCAATC	0.582000													34	156					0	0	0.769981	0	0
C3orf37	56941	broad.mit.edu	37	3	129020839	129020839	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr3:129020839G>C	uc003elt.2	+	6	770	c.682G>C	c.(682-684)GAC>CAC	p.D228H	C3orf37_uc003elu.2_Missense_Mutation_p.D186H|C3orf37_uc003elv.2_Missense_Mutation_p.D228H|C3orf37_uc003elw.2_Missense_Mutation_p.D228H	NM_020187	NP_064572	Q96FZ2	CC037_HUMAN	hypothetical protein LOC56941	228										ovary(1)	1						TAAATGGCTTGACTTTGGTGA	0.463000													52	264					0	0	0.870114	0	0
SLITRK3	22865	broad.mit.edu	37	3	164908435	164908435	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr3:164908435C>T	uc003fej.3	-	2	628	c.184G>A	c.(184-186)GAC>AAC	p.D62N	SLITRK3_uc003fek.2_Missense_Mutation_p.D62N	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	62	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CCTTTACTGTCACAATGTATA	0.373000										HNSCC(40;0.11)			39	362					0	0	0.827153	0	0
CLCN2	1181	broad.mit.edu	37	3	184079221	184079221	+	Missense_Mutation	SNP	T	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr3:184079221T>G	uc003foi.2	-	1	171	c.47A>C	c.(46-48)CAG>CCG	p.Q16P	CLCN2_uc010hya.1_Missense_Mutation_p.Q16P|CLCN2_uc011brl.1_Missense_Mutation_p.Q16P|CLCN2_uc011brm.1_Missense_Mutation_p.Q16P|CLCN2_uc011brn.1_Missense_Mutation_p.Q16P|POLR2H_uc003foj.1_5'Flank|POLR2H_uc003fok.1_5'Flank	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	16	Cytoplasmic (By similarity).					chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	CTGCTCGTACTGCAGCGCCCG	0.706000													23	138					0	0	0.667858	0	0
CC2D2A	57545	broad.mit.edu	37	4	15572024	15572024	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr4:15572024G>T	uc010idv.2	+	29	3744	c.3499G>T	c.(3499-3501)GAC>TAC	p.D1167Y	CC2D2A_uc003gnx.2_Missense_Mutation_p.D1118Y|CC2D2A_uc003gnz.1_RNA|CC2D2A_uc003goa.1_RNA	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	1167	C2.				cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						CCTTTAGGATGACCGTGAAAG	0.343000													8	20					5.18039e-06	5.31621e-06	0.278610	1	0
LOC401127	401127	broad.mit.edu	37	4	39482942	39482942	+	RNA	SNP	A	C	C	rs10010309	by1000genomes	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr4:39482942A>C	uc011byn.1	+	1		c.1068A>C			LOC401127_uc011byo.1_RNA	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						ACATCTGGAAACTTCAGACGA	0.453000													7	143					0	0	0.278610	0	0
COMMD8	54951	broad.mit.edu	37	4	47462175	47462175	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr4:47462175A>C	uc003gxi.2	-	2	216	c.208T>G	c.(208-210)TTA>GTA	p.L70V		NM_017845	NP_060315	Q9NX08	COMD8_HUMAN	COMM domain containing 8	70							protein binding				0						TCATCAGGTAAGTTTTTACCA	0.343000													39	274					0	0	0.840704	0	0
FRYL	285527	broad.mit.edu	37	4	48605373	48605373	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr4:48605373C>G	uc003gyh.1	-	12	1472	c.867G>C	c.(865-867)TTG>TTC	p.L289F	FRYL_uc003gyk.2_Missense_Mutation_p.L289F	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	289					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CAAAATTTTTCAAACAGGGAA	0.289000													36	242					0	0	0.847076	0	0
PLK4	10733	broad.mit.edu	37	4	128804674	128804674	+	Silent	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr4:128804674A>G	uc003ifo.2	+	4	548	c.303A>G	c.(301-303)CTA>CTG	p.L101L	PLK4_uc011cgs.1_Silent_p.L69L|PLK4_uc011cgt.1_Silent_p.L60L	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	101	Protein kinase.				G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						ACAGGTATCTAAAGAATAGAG	0.323000													64	188					0	0	0.870114	0	0
PET112L	5188	broad.mit.edu	37	4	152638043	152638043	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr4:152638043C>T	uc003iml.2	-	4	637	c.625G>A	c.(625-627)GAT>AAT	p.D209N	PET112L_uc003imm.3_Missense_Mutation_p.D209N	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	209						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CTGTTCAAATCAATGAGCGTC	0.408000													33	261					0	0	0.760397	0	0
FBXW7	55294	broad.mit.edu	37	4	153332931	153332931	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr4:153332931C>T	uc003ims.2	-	2	174	c.25G>A	c.(25-27)GGC>AGC	p.G9S	FBXW7_uc011cii.1_Missense_Mutation_p.G9S|FBXW7_uc003imt.2_Missense_Mutation_p.G9S|FBXW7_uc003imu.2_Missense_Mutation_p.G9S	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	9					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				CTTTTGCTGCCCACAGAGAGC	0.483000			Mis|N|D|F		colorectal|endometrial|T-ALL								19	88					0	0	0.539581	0	0
TRIML1	339976	broad.mit.edu	37	4	189065010	189065010	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr4:189065010G>C	uc003izm.1	+	4	869	c.754G>C	c.(754-756)GAA>CAA	p.E252Q	TRIML1_uc003izn.1_5'UTR	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	252					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AGGAGCCCTGGAAAGGTAGGC	0.488000													86	437					0	0	0.870114	0	0
Unknown	0	broad.mit.edu	37	5	33162373	33162373	+	RNA	SNP	A	G	G	rs113452905		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162373A>G	uc003jhx.2	+	1		c.108A>G								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TATGAGTTGGAGCGCCCAGCT	0.612000													12	85					0	0	0.457914	0	0
Unknown	0	broad.mit.edu	37	5	33162430	33162430	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162430A>G	uc003jhx.2	+	1		c.165A>G								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTCCGTGTGCAGGGAAGTAAC	0.542000													12	144					0	0	0.479597	0	0
Unknown	0	broad.mit.edu	37	5	33162435	33162435	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162435A>G	uc003jhx.2	+	1		c.170A>G								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGTGCAGGGAAGTAACAAGAA	0.537000													13	147					0	0	0.457914	0	0
Unknown	0	broad.mit.edu	37	5	33162549	33162549	+	RNA	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162549T>C	uc003jhx.2	+	1		c.284T>C								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		CATCTAATAATGAGCTGGTTC	0.522000													36	172					0	0	0.779181	0	0
Unknown	0	broad.mit.edu	37	5	33162637	33162637	+	RNA	SNP	C	T	T	rs1842247		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162637C>T	uc003jhx.2	+	1		c.372C>T								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGTCCCACTACGTGCTGCCCC	0.468000													7	91					0	0	0.387290	0	0
Unknown	0	broad.mit.edu	37	5	33162639	33162639	+	RNA	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162639T>C	uc003jhx.2	+	1		c.374T>C								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCCCACTACGTGCTGCCCCTG	0.463000													9	87					0	0	0.435327	0	0
Unknown	0	broad.mit.edu	37	5	33162775	33162775	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162775A>G	uc003jhx.2	+	1		c.510A>G								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTCTCCTGGAAGAGCAGTTCC	0.453000													6	61					0	0	0.411799	0	0
Unknown	0	broad.mit.edu	37	5	33162805	33162805	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162805A>G	uc003jhx.2	+	1		c.540A>G								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGCTTCTTGCATGCATCGCTT	0.468000													4	69					0	0	0.387290	0	0
PDE8B	8622	broad.mit.edu	37	5	76507011	76507011	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:76507011G>A	uc003kfa.2	+	1	306	c.261G>A	c.(259-261)GCG>GCA	p.A87A	PDE8B_uc003kfb.2_Silent_p.A87A|PDE8B_uc003kfc.2_Silent_p.A87A|PDE8B_uc003kfd.2_Silent_p.A87A|PDE8B_uc003kfe.2_Silent_p.A87A	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	87					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		CCCCCGCCGCGACCACCAGCA	0.751000													6	4					0	0	0.248553	0	0
SNX24	28966	broad.mit.edu	37	5	122272452	122272452	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:122272452G>C	uc011cwo.1	+	2	253	c.84G>C	c.(82-84)ATG>ATC	p.M28I	SNX24_uc003ktf.2_Missense_Mutation_p.M28I|SNX24_uc010jcy.2_Missense_Mutation_p.M28I	NM_014035	NP_054754	Q9Y343	SNX24_HUMAN	SBBI31 protein	28	PX.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding				0		Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	OV - Ovarian serous cystadenocarcinoma(64;0.000654)|Epithelial(69;0.0016)|all cancers(49;0.0139)		AAGTGCTAATGAATGGAAGAA	0.313000													30	118					0	0	0.796494	0	0
KIF4B	285643	broad.mit.edu	37	5	154395716	154395716	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:154395716A>C	uc010jih.1	+	1	2457	c.2297A>C	c.(2296-2298)GAC>GCC	p.D766A		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	766	Interaction with PRC1 (By similarity).|Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CATCTGAATGACCTCCTTGAA	0.458000													18	142					0	0	0.575678	0	0
FLT4	2324	broad.mit.edu	37	5	180056837	180056837	+	Splice_Site	SNP	T	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:180056837T>A	uc003mma.3	-	6	756	c.677_splice	c.e6-1	p.G226_splice	FLT4_uc003mlz.3_Splice_Site_p.G226_splice|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Splice_Site_p.G226_splice|FLT4_uc011dgz.1_Splice_Site_p.G226_splice|FLT4_uc011dha.1_Intron	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2						positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GCTCGTTGCCTGTTGACACGC	0.607000									Congenital_Hereditary_Lymphedema				38	53					0	0	0.796494	0	0
SERPINB1	1992	broad.mit.edu	37	6	2838132	2838132	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:2838132G>A	uc003mub.2	-	4	452	c.408C>T	c.(406-408)GTC>GTT	p.V136V	SERPINB1_uc003muc.2_5'UTR	NM_030666	NP_109591	P30740	ILEU_HUMAN	serine (or cysteine) proteinase inhibitor, clade	136					regulation of proteolysis	cytoplasm|extracellular space	serine-type endopeptidase inhibitor activity			breast(4)|ovary(1)	5	Ovarian(93;0.0412)			OV - Ovarian serous cystadenocarcinoma(45;0.0717)		TCTGTCCTTTGACCCACTGGT	0.488000													53	529					0	0	0.870114	0	0
SCGN	10590	broad.mit.edu	37	6	25670278	25670278	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:25670278A>T	uc003nfb.2	+	6	648	c.445A>T	c.(445-447)AAA>TAA	p.K149*	SCGN_uc010jpz.2_Silent_p.L58L	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	149	EF-hand 4.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						TTCTGAGGCTAAACTGGAAGA	0.289000													67	353					0	0	0.870114	0	0
SCGN	10590	broad.mit.edu	37	6	25670281	25670281	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:25670281C>A	uc003nfb.2	+	6	651	c.448C>A	c.(448-450)CTG>ATG	p.L150M	SCGN_uc010jpz.2_Missense_Mutation_p.N59K	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	150	EF-hand 4.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						TGAGGCTAAACTGGAAGAATA	0.284000													65	348					3.33906e-19	3.6743e-19	0.870114	1	0
HIST1H2AM	8336	broad.mit.edu	37	6	27860842	27860842	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:27860842C>G	uc003nkb.1	-	1	122	c.86G>C	c.(85-87)GGA>GCA	p.G29A	HIST1H3J_uc003nka.2_5'Flank|HIST1H2BO_uc003nkc.1_5'Flank	NM_003514	NP_003505	P0C0S8	H2A1_HUMAN	histone cluster 1, H2am	29					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding			ovary(2)	2						GTGCACTCGTCCTACAGGAAA	0.647000													7	179					0	0	0.248553	0	0
TNXB	7148	broad.mit.edu	37	6	32020759	32020759	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:32020759C>G	uc003nzl.2	-	26	8999	c.8797G>C	c.(8797-8799)GAA>CAA	p.E2933Q		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2980					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCGGGAGTTTCTTCCTCTGCA	0.637000													23	117					0	0	0.654019	0	0
ZNF318	24149	broad.mit.edu	37	6	43305986	43305986	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:43305986C>A	uc003oux.2	-	10	5828	c.5750G>T	c.(5749-5751)AGT>ATT	p.S1917I	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1917					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CCCCTCCTCACTAACAACTGA	0.438000													48	333					2.56175e-15	2.76346e-15	0.870114	1	0
MCM3	4172	broad.mit.edu	37	6	52146932	52146932	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:52146932A>G	uc003pan.1	-	4	552	c.442T>C	c.(442-444)TGT>CGT	p.C148R	MCM3_uc011dwu.1_Missense_Mutation_p.C102R	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	148					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					GTAGCAGGACAGTAGTGGACA	0.488000													46	281					0	0	0.870114	0	0
TBX18	9096	broad.mit.edu	37	6	85457659	85457659	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:85457659G>A	uc003pkl.1	-	5	918	c.918C>T	c.(916-918)GTC>GTT	p.V306V	TBX18_uc010kbq.1_Silent_p.V148V	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	306	T-box.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		GATAGGCAGTGACGGTTGTGA	0.438000													19	123					0	0	0.592651	0	0
RBM16	22828	broad.mit.edu	37	6	155123170	155123170	+	Silent	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr6:155123170C>T	uc003qqa.2	+	8	904	c.672C>T	c.(670-672)GCC>GCT	p.A224A	RBM16_uc011efj.1_Silent_p.A290A|RBM16_uc011efk.1_Silent_p.A269A|RBM16_uc003qpz.2_Silent_p.A224A|RBM16_uc010kji.2_Silent_p.A245A	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	224	Gln-rich.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		TTCTGCAGGCCCTAGATGCTG	0.443000													48	186					0	0	0.870114	0	0
TNRC18	84629	broad.mit.edu	37	7	5427483	5427483	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr7:5427483G>T	uc003soi.3	-	5	2321	c.1972C>A	c.(1972-1974)CCC>ACC	p.P658T	TNRC18_uc010ksx.1_Missense_Mutation_p.P584T	NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	658							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GCGCTCTCGGGCCTCTCGGGG	0.736000													7	38					2.7689e-08	2.88471e-08	0.248553	1	0
GLI3	2737	broad.mit.edu	37	7	42012195	42012195	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr7:42012195G>C	uc011kbh.1	-	13	1935	c.1844C>G	c.(1843-1845)ACT>AGT	p.T615S	GLI3_uc011kbg.1_Missense_Mutation_p.T556S	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	615	C2H2-type 5.				negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GTAACGCTTAGTGCAGCCTGG	0.507000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				19	134					0	0	0.557998	0	0
ABCB1	5243	broad.mit.edu	37	7	87178760	87178760	+	Silent	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr7:87178760A>G	uc003uiz.1	-	15	2047	c.1629T>C	c.(1627-1629)CGT>CGC	p.R543R	ABCB1_uc011khc.1_Silent_p.R479R	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	543	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	GAACCAGGGCACGTGCAATGG	0.547000													58	232					0	0	0.870114	0	0
SLC25A13	10165	broad.mit.edu	37	7	95818665	95818665	+	Silent	SNP	G	T	T	rs142308242		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr7:95818665G>T	uc003uof.3	-	9	1065	c.874C>A	c.(874-876)CGG>AGG	p.R292R	SLC25A13_uc003uog.3_Silent_p.R292R|SLC25A13_uc011kik.1_Silent_p.R184R	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	292					ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	GGAGCAATCCGTTCAATGTCT	0.408000													20	89					1.64293e-13	1.76535e-13	0.654019	1	0
FAM180A	389558	broad.mit.edu	37	7	135418815	135418815	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr7:135418815G>C	uc003vtd.2	-	3	696	c.430C>G	c.(430-432)CAG>GAG	p.Q144E	FAM180A_uc010lmt.2_RNA|FAM180A_uc010lmu.2_Missense_Mutation_p.Q144E	NM_205855	NP_995327	Q6UWF9	F180A_HUMAN	hypothetical protein LOC389558 precursor	144						extracellular region				ovary(2)	2						ATGTCCTTCTGATGGCCGTGG	0.607000													19	153					0	0	0.575678	0	0
RHOBTB2	23221	broad.mit.edu	37	8	22864416	22864416	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:22864416C>G	uc003xcq.2	+	5	1195	c.658C>G	c.(658-660)CAC>GAC	p.H220D	RHOBTB2_uc003xcp.2_Missense_Mutation_p.H242D|RHOBTB2_uc011kzp.1_Missense_Mutation_p.H227D|uc003xcr.2_RNA	NM_015178	NP_055993	Q9BYZ6	RHBT2_HUMAN	Rho-related BTB domain containing 2 isoform 3	220					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			ovary(1)|lung(1)	2		Prostate(55;0.0513)|Breast(100;0.214)		Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CTGGAAGTCCCACCTCCGCAA	0.652000													40	265					0	0	0.819951	0	0
Unknown	0	broad.mit.edu	37	8	30209557	30209557	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:30209557C>T	uc003xhz.2	+	1	39	c.34C>T	c.(34-36)CGT>TGT	p.R12C						SubName: Full=Class IVb beta tubulin;																		GGCTGGTCAGCGTGGCAACCA	0.483000													10	177					0	0	0.361761	0	0
MYST3	7994	broad.mit.edu	37	8	41834718	41834718	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:41834718C>G	uc010lxb.2	-	8	1715	c.1171G>C	c.(1171-1173)GAC>CAC	p.D391H	MYST3_uc010lxc.2_Missense_Mutation_p.D391H|MYST3_uc003xon.3_Missense_Mutation_p.D391H|MYST3_uc010lxd.2_Missense_Mutation_p.D391H	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	391	Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CTGCAGAAGTCCAAGCCATCT	0.453000													29	298					0	0	0.740014	0	0
PRKDC	5591	broad.mit.edu	37	8	48744458	48744458	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:48744458G>A	uc003xqi.2	-	61	8239	c.8182C>T	c.(8182-8184)CTG>TTG	p.L2728L	PRKDC_uc003xqj.2_Silent_p.L2728L|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2728	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CGTCTGCGCAGTCGTAGTAGG	0.552000								NHEJ					74	409					0	0	0.870114	0	0
CSPP1	79848	broad.mit.edu	37	8	68062034	68062034	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:68062034G>C	uc003xxi.2	+	18	2113	c.2082G>C	c.(2080-2082)ATG>ATC	p.M694I	CSPP1_uc003xxg.1_Missense_Mutation_p.M686I|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Missense_Mutation_p.M659I|CSPP1_uc003xxk.2_Intron	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	694						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			TGAATAGGATGCACAGACAAA	0.328000													88	625					0	0	0.870114	0	0
PTDSS1	9791	broad.mit.edu	37	8	97311970	97311970	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:97311970C>G	uc003yht.1	+	6	751	c.649C>G	c.(649-651)CAA>GAA	p.Q217E	PTDSS1_uc003yhu.1_Missense_Mutation_p.Q71E	NM_014754	NP_055569	P48651	PTSS1_HUMAN	phosphatidylserine synthase 1	217	Helical; (Potential).				phosphatidylserine biosynthetic process	integral to membrane	transferase activity			ovary(1)	1	Breast(36;6.18e-05)				Phosphatidylserine(DB00144)	CTGGTGGGATCAAGTCATTCT	0.493000													37	517					0	0	0.796494	0	0
VPS13B	157680	broad.mit.edu	37	8	100155279	100155279	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:100155279C>G	uc003yiv.2	+	13	1840	c.1729C>G	c.(1729-1731)CTT>GTT	p.L577V	VPS13B_uc003yiw.2_Missense_Mutation_p.L577V|VPS13B_uc003yit.2_Missense_Mutation_p.L577V|VPS13B_uc003yiu.1_Missense_Mutation_p.L577V|VPS13B_uc003yix.1_Missense_Mutation_p.L48V	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	577					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CACCAAAAGCCTTGTTATAGG	0.373000													100	245					0	0	0.870114	0	0
ZHX1	11244	broad.mit.edu	37	8	124267697	124267697	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:124267697C>T	uc003yqe.2	-	3	920	c.490G>A	c.(490-492)GAG>AAG	p.E164K	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.E164K|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.E164K	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	164					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TCTGCTTGCTCTGCATTCTCC	0.323000													23	456					0	0	0.639603	0	0
LRRC6	23639	broad.mit.edu	37	8	133595976	133595976	+	Silent	SNP	A	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:133595976A>T	uc003ytk.2	-	11	1265	c.1191T>A	c.(1189-1191)ACT>ACA	p.T397T	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	397						cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TGTCCGAGGTAGTTTTCATAG	0.403000													15	223					0	0	0.479597	0	0
TSNARE1	203062	broad.mit.edu	37	8	143427196	143427196	+	Missense_Mutation	SNP	T	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:143427196T>G	uc003ywk.2	-	3	264	c.146A>C	c.(145-147)GAG>GCG	p.E49A	TSNARE1_uc011lju.1_Missense_Mutation_p.E49A|TSNARE1_uc003ywj.2_Missense_Mutation_p.E49A|TSNARE1_uc003ywl.3_Intron	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	49					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CAGCTTGCTCTCTGGCGACGG	0.597000													11	176					0	0	0.411799	0	0
C8orf73	642475	broad.mit.edu	37	8	144650380	144650380	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:144650380G>T	uc010mff.2	-	11	1740	c.1696C>A	c.(1696-1698)CTG>ATG	p.L566M		NM_001100878	NP_001094348	A6NGR9	CH073_HUMAN	hypothetical protein LOC642475	566							binding			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			AACTCCTCCAGCAGGCCCCAG	0.652000													12	55					1.5739e-10	1.65865e-10	0.500413	1	0
SHARPIN	81858	broad.mit.edu	37	8	145154701	145154701	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:145154701C>G	uc003zba.2	-	4	1048	c.564G>C	c.(562-564)GAG>GAC	p.E188D	SHARPIN_uc003zbb.2_RNA	NM_030974	NP_112236	Q9H0F6	SHRPN_HUMAN	shank-interacting protein-like 1	188	Interaction with SHANK1 (By similarity).				negative regulation of inflammatory response|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein linear polyubiquitination|regulation of CD40 signaling pathway|regulation of tumor necrosis factor-mediated signaling pathway	cytosol|LUBAC complex	polyubiquitin binding|zinc ion binding			ovary(1)	1	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.1e-42)|Epithelial(56;1.58e-40)|all cancers(56;6.12e-36)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTGCCCCCTTCTCGTCTCCAC	0.637000													24	206					0	0	0.654019	0	0
RFX3	5991	broad.mit.edu	37	9	3271027	3271027	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:3271027T>C	uc003zhr.2	-	11	1490	c.1178A>G	c.(1177-1179)GAT>GGT	p.D393G	RFX3_uc010mhd.2_Missense_Mutation_p.D393G|RFX3_uc003zhs.1_Missense_Mutation_p.D393G|RFX3_uc003zht.1_Missense_Mutation_p.D393G	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	393					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		GGTAGTGCCATCAGTTGGAGT	0.368000													30	243					0	0	0.740014	0	0
TAF1L	138474	broad.mit.edu	37	9	32634851	32634851	+	Silent	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:32634851A>G	uc003zrg.1	-	1	817	c.727T>C	c.(727-729)TTG>CTG	p.L243L	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	243					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		ACACTTGGCAACAGCTTGGTG	0.488000													27	303					0	0	0.693898	0	0
NOL6	65083	broad.mit.edu	37	9	33468069	33468069	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:33468069C>T	uc003zsz.2	-	11	1484	c.1383G>A	c.(1381-1383)ATG>ATA	p.M461I	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Missense_Mutation_p.M461I|NOL6_uc010mjv.2_Missense_Mutation_p.M458I|NOL6_uc011lob.1_Missense_Mutation_p.M409I|NOL6_uc003ztb.1_Missense_Mutation_p.M461I	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	461					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		GTTTGGGAGTCATCAACAGCA	0.567000													16	323					0	0	0.520397	0	0
ANXA2P2	304	broad.mit.edu	37	9	33625225	33625225	+	Silent	SNP	C	T	T	rs112536351		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:33625225C>T	uc010mjx.2	+	1	1003	c.954C>T	c.(952-954)TAC>TAT	p.Y318Y		NM_004039	NP_004030			annexin A2 isoform 2												0						TGTACTATTACATCCAGCAAG	0.498000													9	118					0	0	0.361761	0	0
PIGO	84720	broad.mit.edu	37	9	35095294	35095294	+	Missense_Mutation	SNP	A	T	T	rs148704151		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:35095294A>T	uc003zwd.2	-	2	665	c.269T>A	c.(268-270)GTG>GAG	p.V90E	PIGO_uc003zwc.1_Missense_Mutation_p.V90E|PIGO_uc003zwe.2_Missense_Mutation_p.V90E|PIGO_uc003zwf.2_Missense_Mutation_p.V90E|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	90					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CTCTCTAGGCACGTGTGAATG	0.577000													22	380					0	0	0.693898	0	0
RNF38	152006	broad.mit.edu	37	9	36390574	36390574	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:36390574G>C	uc003zzh.2	-	2	243	c.52C>G	c.(52-54)CCT>GCT	p.P18A	RNF38_uc003zzi.2_Intron|RNF38_uc003zzj.2_Translation_Start_Site|RNF38_uc003zzk.2_Intron|RNF38_uc003zzl.2_Intron|RNF38_uc003zzm.2_Translation_Start_Site	NM_022781	NP_073618	Q9H0F5	RNF38_HUMAN	ring finger protein 38 isoform 1	18							zinc ion binding			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			ACCTTGTTAGGATGGCCAGGT	0.488000													41	309					0	0	0.834066	0	0
TMOD1	7111	broad.mit.edu	37	9	100328234	100328234	+	Silent	SNP	G	A	A	rs142987399		TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:100328234G>A	uc004axk.1	+	7	936	c.723G>A	c.(721-723)GCG>GCA	p.A241A	TMOD1_uc004axl.1_Silent_p.A241A	NM_003275	NP_003266	P28289	TMOD1_HUMAN	tropomodulin 1	241					muscle filament sliding	cytosol	actin binding				0		Acute lymphoblastic leukemia(62;0.154)		STAD - Stomach adenocarcinoma(157;0.105)		ACCCCGTGGCGTATGTATGTA	0.493000													39	165					0	0	0.796494	0	0
OR1J2	26740	broad.mit.edu	37	9	125273681	125273681	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:125273681A>G	uc004bmj.1	+	4	1456	c.601A>G	c.(601-603)ACA>GCA	p.T201A	OR1J2_uc011lyv.1_Missense_Mutation_p.T201A	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						GGTCATGTTCACAGTAGGGGT	0.517000													45	189					0	0	0.853193	0	0
METTL11A	28989	broad.mit.edu	37	9	132395107	132395107	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:132395107T>A	uc004byd.1	+	2	319	c.125T>A	c.(124-126)ATC>AAC	p.I42N	METTL11A_uc010myw.1_Intron|METTL11A_uc011mbs.1_Missense_Mutation_p.I42N	NM_014064	NP_054783	Q9BV86	NTM1A_HUMAN	methyltransferase like 11A	42					chromosome segregation|N-terminal peptidyl-proline dimethylation|N-terminal peptidyl-serine dimethylation|N-terminal peptidyl-serine trimethylation|spindle organization	nucleus	protein binding|protein methyltransferase activity				0						AGCATCGACATCAACAGCTCC	0.567000													65	330					0	0	0.870114	0	0
FNBP1	23048	broad.mit.edu	37	9	132662705	132662705	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:132662705C>T	uc004byw.1	-	14	1769	c.1550G>A	c.(1549-1551)AGC>AAC	p.S517N	FNBP1_uc011mbv.1_Missense_Mutation_p.S507N|FNBP1_uc011mbw.1_Missense_Mutation_p.S512N|FNBP1_uc004bza.2_Missense_Mutation_p.S451N|FNBP1_uc004byz.1_Missense_Mutation_p.S488N|FNBP1_uc011mbu.1_Missense_Mutation_p.S145N|FNBP1_uc004byx.1_Missense_Mutation_p.S433N|FNBP1_uc004byy.1_Missense_Mutation_p.S423N	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	517	Required for self-association and induction of membrane tubulation.|Interaction with PDE6G (By similarity).|Interaction with RND2 (By similarity).|Required for interaction with TNKS.			Missing: Abrogates interaction with TNKS.	endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		GATACTGTACCTCTCACGGTC	0.572000			T	MLL	AML								8	40					0	0	0.278610	0	0
Unknown	0	broad.mit.edu	37	MT	3438	3438	+	RNA	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:3438G>A	uc004cos.3	+	2		c.1731G>A			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		GGCCCCTACGGGCTACTACAA	0.498000													4	29					0	0	0.150653	0	0
Unknown	0	broad.mit.edu	37	MT	8027	8027	+	RNA	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:8027G>A	uc004cou.3	+	1		c.442G>A			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		TCCCGATTGAAGCCCCCATTC	0.468000													11	85					0	0	0.411799	0	0
Unknown	0	broad.mit.edu	37	MT	8684	8684	+	RNA	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:8684C>T	uc011mfi.1	+	1		c.22C>T			uc004cov.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		AATCAAACTAACCTCAAAACA	0.398000													7	109					0	0	0.307466	0	0
Unknown	0	broad.mit.edu	37	MT	8697	8697	+	RNA	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:8697G>A	uc011mfi.1	+	1		c.35G>A			uc004cov.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		TCAAAACAAATGATAGCCATA	0.403000													24	82					0	0	0.639603	0	0
Unknown	0	broad.mit.edu	37	MT	8701	8701	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:8701A>G	uc011mfi.1	+	1		c.39A>G			uc004cov.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		AACAAATGATAGCCATACACA	0.403000													8	96					0	0	0.435327	0	0
Unknown	0	broad.mit.edu	37	MT	9080	9080	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:9080A>G	uc011mfi.1	+	1		c.418A>G			uc004cov.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		ATCAACCATTAACCTTCCCTC	0.453000													4	59					0	0	0.150653	0	0
Unknown	0	broad.mit.edu	37	MT	9117	9117	+	RNA	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:9117T>C	uc011mfi.1	+	1		c.455T>C			uc004cov.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		ACAATTCTAATTCTACTGACT	0.443000													5	59					0	0	0.248553	0	0
Unknown	0	broad.mit.edu	37	MT	9540	9540	+	RNA	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:9540T>C	uc011mfi.1	+	1		c.878T>C			uc004cov.3_5'Flank|uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		CTACCCCCCAACTAGGAGGGC	0.493000													6	77					0	0	0.248553	0	0
Unknown	0	broad.mit.edu	37	MT	9656	9656	+	RNA	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:9656T>C	uc011mfi.1	+	1		c.994T>C			uc004cov.3_5'Flank|uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		GCTCACCATAGTCTAATAGAA	0.443000													7	105					0	0	0.278610	0	0
Unknown	0	broad.mit.edu	37	MT	9804	9804	+	RNA	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:9804G>A	uc011mfi.1	+	1		c.1142G>A			uc004cov.3_5'Flank|uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		CATTTTTTGTAGCCACAGGCT	0.443000													15	82					0	0	0.539581	0	0
Unknown	0	broad.mit.edu	37	MT	10873	10873	+	RNA	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:10873T>C	uc004cov.3	+	1		c.296T>C			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		AGCATCATCCCCCTACTATTT	0.403000													10	59					0	0	0.335167	0	0
Unknown	0	broad.mit.edu	37	MT	11119	11119	+	RNA	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:11119C>T	uc004cov.3	+	1		c.542C>T			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		ATATTTTATATCTTCTTCGAA	0.418000													8	79					0	0	0.307466	0	0
Unknown	0	broad.mit.edu	37	MT	11251	11251	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:11251A>G	uc004cov.3	+	1		c.674A>G			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		CTCATCGCACTAATTTACACT	0.473000													17	70					0	0	0.539581	0	0
Unknown	0	broad.mit.edu	37	MT	11764	11764	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:11764A>G	uc004cov.3	+	1		c.1187A>G			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		TCAAACTACGAACGCACTCAC	0.483000													10	113					0	0	0.411799	0	0
Unknown	0	broad.mit.edu	37	MT	11812	11812	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:11812A>G	uc004cov.3	+	1		c.1235A>G			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		CTTCAAACTCTACTCCCACTA	0.473000													36	85					0	0	0.812448	0	0
Unknown	0	broad.mit.edu	37	MT	12007	12007	+	RNA	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:12007G>A	uc004cov.3	+	1		c.1430G>A			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		ACAACACAATGGGGCTCACTC	0.448000													5	65					0	0	0.217242	0	0
Unknown	0	broad.mit.edu	37	MT	12705	12705	+	RNA	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:12705C>T	uc004cox.3	+	1		c.369C>T			uc004coy.2_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		TATCTACTCATTTTCCTAATT	0.373000													5	32					0	0	0.184627	0	0
Unknown	0	broad.mit.edu	37	MT	13368	13368	+	RNA	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:13368G>A	uc004cox.3	+	1		c.1032G>A			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		ATGTGCTCCGGGTCCATCATC	0.448000													4	29					0	0	0.217242	0	0
Unknown	0	broad.mit.edu	37	MT	13743	13743	+	RNA	SNP	T	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:13743T>C	uc004cox.3	+	1		c.1407T>C			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		TTTCTCATTACTAACAACATT	0.493000													3	20					0	0	0.217242	0	0
Unknown	0	broad.mit.edu	37	MT	13966	13966	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:13966A>G	uc004cox.3	+	1		c.1630A>G			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		TAGGCCTTCTTACGAGCCAAA	0.428000													6	29					0	0	0.217242	0	0
Unknown	0	broad.mit.edu	37	MT	14139	14139	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:14139A>G	uc004cox.3	+	1		c.1803A>G			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		ACCCTACTCCTAATCACATAA	0.398000													4	40					0	0	0.217242	0	0
Unknown	0	broad.mit.edu	37	MT	14233	14233	+	RNA	SNP	A	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:14233A>G	uc004cox.3	+	1		c.1897A>G			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CAACGCCCATAATCATACAAA	0.408000													7	32					0	0	0.278610	0	0
Unknown	0	broad.mit.edu	37	MT	14869	14869	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:14869G>C	uc004coy.2	+	1	109	c.34G>C	c.(34-36)GAT>CAT	p.D12H	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		GGCGCCTGCCTGATCCTCCAA	0.493000													3	35					0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	MT	14905	14905	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:14905G>A	uc004coy.2	+	1	145	c.70G>A	c.(70-72)GCA>ACA	p.A24T	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		TTCCTAGCCATACACTACTCA	0.532000													6	26					0	0	0.217242	0	0
Unknown	0	broad.mit.edu	37	MT	15043	15043	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrM:15043G>A	uc004coy.2	+	1	283	c.208G>A	c.(208-210)GCG>ACG	p.A70T	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		CTACACATCGGGCGAGGCCTA	0.468000													4	37					0	0	0.150653	0	0
TIMP1	7076	broad.mit.edu	37	X	47446054	47446054	+	Silent	SNP	G	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrX:47446054G>C	uc004dif.2	+	6	780	c.588G>C	c.(586-588)CTG>CTC	p.L196L	SYN1_uc004did.2_Intron|SYN1_uc004die.2_Intron	NM_003254	NP_003245	P01033	TIMP1_HUMAN	tissue inhibitor of metalloproteinase 1	196					erythrocyte maturation|negative regulation of membrane protein ectodomain proteolysis|platelet activation|platelet degranulation|positive regulation of cell proliferation	platelet alpha granule lumen	metal ion binding|metalloendopeptidase inhibitor activity|protein binding				0						AGCCAGGGCTGTGCACCTGGC	0.612000													8	117					0	0	0.307466	0	0
WDR45	11152	broad.mit.edu	37	X	48932556	48932556	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrX:48932556C>T	uc004dmk.1	-	11	1161	c.989G>A	c.(988-990)GGG>GAG	p.G330E	PRAF2_uc004dmh.2_5'Flank|PRAF2_uc004dmi.2_5'Flank|PRAF2_uc011mmt.1_Intron|WDR45_uc004dmj.1_Missense_Mutation_p.G291E|WDR45_uc004dml.1_Missense_Mutation_p.G331E|WDR45_uc004dmm.1_Missense_Mutation_p.G295E|WDR45_uc010nim.1_Nonsense_Mutation_p.W247*|WDR45_uc004dmn.1_Missense_Mutation_p.G221E|WDR45_uc004dmo.1_Missense_Mutation_p.G353E|WDR45_uc004dmp.1_Missense_Mutation_p.G331E	NM_001029896	NP_001025067	Q9Y484	WIPI4_HUMAN	WD repeat domain 45 isoform 2	330					autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1						GTGGAAGGTCCCATCTACGCA	0.537000													12	165					0	0	0.411799	0	0
WDR45	11152	broad.mit.edu	37	X	48932560	48932560	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrX:48932560C>G	uc004dmk.1	-	11	1157	c.985G>C	c.(985-987)GAT>CAT	p.D329H	PRAF2_uc004dmh.2_5'Flank|PRAF2_uc004dmi.2_5'Flank|PRAF2_uc011mmt.1_Intron|WDR45_uc004dmj.1_Missense_Mutation_p.D290H|WDR45_uc004dml.1_Missense_Mutation_p.D330H|WDR45_uc004dmm.1_Missense_Mutation_p.D294H|WDR45_uc010nim.1_Missense_Mutation_p.R246T|WDR45_uc004dmn.1_Missense_Mutation_p.D220H|WDR45_uc004dmo.1_Missense_Mutation_p.D352H|WDR45_uc004dmp.1_Missense_Mutation_p.D330H	NM_001029896	NP_001025067	Q9Y484	WIPI4_HUMAN	WD repeat domain 45 isoform 2	329					autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1						AAGGTCCCATCTACGCAGATG	0.537000													12	158					0	0	0.411799	0	0
AGTR2	186	broad.mit.edu	37	X	115303595	115303595	+	Missense_Mutation	SNP	G	T	T	rs121917810	byFrequency	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrX:115303595G>T	uc004eqh.3	+	3	269	c.62G>T	c.(61-63)GGG>GTG	p.G21V		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	21	Extracellular (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						CTTCACTTCGGGCTTGTGAAC	0.413000													21	137					8.04996e-18	8.7876e-18	0.608945	1	0
SLC6A14	11254	broad.mit.edu	37	X	115582675	115582675	+	Silent	SNP	A	G	G	rs61910752	byFrequency	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrX:115582675A>G	uc004eqi.2	+	8	1103	c.999A>G	c.(997-999)CTA>CTG	p.L333L		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	333	Helical; Name=6; (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	TAGTTGCTCTATCATCTTACA	0.358000													8	232					0	0	0.307466	0	0
OCRL	4952	broad.mit.edu	37	X	128696369	128696369	+	Silent	SNP	G	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chrX:128696369G>A	uc004euq.2	+	11	1113	c.948G>A	c.(946-948)CTG>CTA	p.L316L	OCRL_uc004eur.2_Silent_p.L316L	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	316					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						AGGTTCAACTGGTGCGCCTTG	0.403000													61	210					0	0	0.870114	0	0
CDCP2	200008	broad.mit.edu	37	1	54605517	54605517	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:54605517delT	uc001cwv.1	-	4	1874	c.1026delA	c.(1024-1026)CCAfs	p.P342fs		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	342	CUB 3.					extracellular region				ovary(1)	1						AGGTCACGGGTGGTGGCAGGT	0.632													19	151	---	---	---	---					
KCNC4	3749	broad.mit.edu	37	1	110768648	110768664	+	Frame_Shift_Del	DEL	CTGGCCTCACCCAACCC	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:110768648_110768664delCTGGCCTCACCCAACCC	uc001dzh.2	+	3	1724_1740	c.1667_1683delCTGGCCTCACCCAACCC	c.(1666-1683)GCTGGCCTCACCCAACCCfs	p.A556fs	KCNC4_uc009wfr.2_Frame_Shift_Del_p.A556fs|KCNC4_uc001dzg.2_Frame_Shift_Del_p.A556fs|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	556_561	Cytoplasmic (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		GAGGAGGGAGCTGGCCTCACCCAACCCCTGGCCTCCT	0.641													21	171	---	---	---	---					
OTUD7B	56957	broad.mit.edu	37	1	149920861	149920869	+	Splice_Site	DEL	CCTGGCTTA	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:149920861_149920869delCCTGGCTTA	uc001etn.2	-	10	1594	c.1238_splice	c.e10+1	p.S413_splice		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne						negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			AAAGACTAGGCCTGGCTTACCTGGCCAAT	0.498													14	230	---	---	---	---					
RPL31P11	641311	broad.mit.edu	37	1	161654767	161654768	+	RNA	INS	-	C	C			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr1:161654767_161654768insC	uc001gbc.2	-	1		c.275_276insG				NR_002595				Homo sapiens cDNA clone IMAGE:6574909, containing frame-shift errors.												0						TATGGGACATTCTTATTCCTTT	0.465													7	116	---	---	---	---					
SSH3	54961	broad.mit.edu	37	11	67076881	67076899	+	Frame_Shift_Del	DEL	TTGAACATGGCCCGGGAGA	-	-	rs74859815	by1000genomes	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:67076881_67076899delTTGAACATGGCCCGGGAGA	uc001okj.2	+	11	1253_1271	c.1075_1093delTTGAACATGGCCCGGGAGA	c.(1075-1095)TTGAACATGGCCCGGGAGATTfs	p.L359fs	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Frame_Shift_Del_p.L213fs	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	359_365	Tyrosine-protein phosphatase.				regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			CACCCACATCTTGAACATGGCCCGGGAGATTGACAACTT	0.635													13	237	---	---	---	---					
MRPL48	51642	broad.mit.edu	37	11	73555970	73555980	+	Frame_Shift_Del	DEL	CCCAGTATGTT	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr11:73555970_73555980delCCCAGTATGTT	uc001ouh.3	+	5	420_430	c.320_330delCCCAGTATGTT	c.(319-330)GCCCAGTATGTTfs	p.A107fs	MRPL48_uc009ytt.2_Frame_Shift_Del_p.A8fs|MRPL48_uc010rri.1_Frame_Shift_Del_p.A89fs|MRPL48_uc009ytu.2_Frame_Shift_Del_p.A8fs	NM_016055	NP_057139	Q96GC5	RM48_HUMAN	mitochondrial ribosomal protein L48 precursor	107_110					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						GAGAGTTATGCCCAGTATGTTCACAACCTCT	0.403													26	175	---	---	---	---					
COCH	1690	broad.mit.edu	37	14	31355263	31355270	+	Frame_Shift_Del	DEL	GCTGTACA	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr14:31355263_31355270delGCTGTACA	uc001wqr.2	+	11	1302_1309	c.1222_1229delGCTGTACA	c.(1222-1230)GCTGTACAGfs	p.A408fs	COCH_uc001wqp.2_Frame_Shift_Del_p.A408fs|COCH_uc001wqq.3_Frame_Shift_Del_p.A408fs|uc001wqs.2_RNA|COCH_uc001wqt.1_Frame_Shift_Del_p.A259fs	NM_004086	NP_004077	O43405	COCH_HUMAN	cochlin precursor	408_410	VWFA 2.				sensory perception of sound	proteinaceous extracellular matrix				pancreas(1)|central_nervous_system(1)|skin(1)	3	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.00645)		CAAGATAGCTGCTGTACAGTTTACTTAT	0.442													18	268	---	---	---	---					
RNF135	84282	broad.mit.edu	37	17	29325974	29325984	+	Frame_Shift_Del	DEL	GCCAGCTCTCT	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr17:29325974_29325984delGCCAGCTCTCT	uc002hfz.2	+	5	1200_1210	c.1064_1074delGCCAGCTCTCT	c.(1063-1074)AGCCAGCTCTCTfs	p.S355fs	RNF135_uc002hga.2_3'UTR|RNF135_uc010csm.2_3'UTR|RNF135_uc002hgb.2_3'UTR	NM_032322	NP_115698	Q8IUD6	RN135_HUMAN	ring finger protein 135 isoform 1	355_358	B30.2/SPRY.				innate immune response|negative regulation of type I interferon production|positive regulation of interferon-beta production|regulation of innate immune response	cytosol	protein binding|ribonucleoprotein binding|ubiquitin-protein ligase activity|zinc ion binding	p.?(1)		skin(2)	2		all_cancers(10;8.65e-08)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Myeloproliferative disorder(56;0.0255)				AAGGGGACTAGCCAGCTCTCTGCATGGCACA	0.573													20	172	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	9801486	9801489	+	Frame_Shift_Del	DEL	AGTG	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:9801486_9801489delAGTG	uc010xkx.1	-	3	1001_1004	c.378_381delCACT	c.(376-381)TTCACTfs	p.F126fs						RecName: Full=Zinc finger protein 562;																		GAGAAAAATTAGTGAAGGATTTCC	0.353													14	131	---	---	---	---					
EPS8L1	54869	broad.mit.edu	37	19	55597500	55597501	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:55597500_55597501insA	uc002qis.3	+	16	1694_1695	c.1590_1591insA	c.(1588-1593)AACATCfs	p.N530fs	EPS8L1_uc010ess.1_Frame_Shift_Ins_p.N544fs|EPS8L1_uc010yfr.1_Frame_Shift_Ins_p.N466fs|EPS8L1_uc002qiu.2_Frame_Shift_Ins_p.N403fs|EPS8L1_uc002qiv.2_Frame_Shift_Ins_p.N208fs|EPS8L1_uc002qiw.2_Frame_Shift_Ins_p.N309fs	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	530_531	SH3.					cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		TGCCCTACAACATCCTGACACC	0.629													10	272	---	---	---	---					
EPS8L1	54869	broad.mit.edu	37	19	55597522	55597522	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:55597522delC	uc002qis.3	+	16	1716	c.1612delC	c.(1612-1614)CCCfs	p.P538fs	EPS8L1_uc010ess.1_Frame_Shift_Del_p.P552fs|EPS8L1_uc010yfr.1_Frame_Shift_Del_p.P474fs|EPS8L1_uc002qiu.2_Frame_Shift_Del_p.P411fs|EPS8L1_uc002qiv.2_Frame_Shift_Del_p.P216fs|EPS8L1_uc002qiw.2_Frame_Shift_Del_p.P317fs	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	538	Pro-rich.					cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		CTACCCCGGACCCCGGCTGCA	0.642													8	252	---	---	---	---					
C19orf51	352909	broad.mit.edu	37	19	55670960	55670961	+	In_Frame_Ins	INS	-	AGA	AGA			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr19:55670960_55670961insAGA	uc002qji.1	-	11	1212_1213	c.1178_1179insTCT	c.(1177-1179)CTC>CTTCTC	p.393_393L>LL	TNNI3_uc002qjg.3_5'Flank|TNNI3_uc010yft.1_5'Flank|C19orf51_uc002qjh.1_In_Frame_Ins_p.208_208L>LL|C19orf51_uc002qjj.1_In_Frame_Ins_p.440_440L>LL|C19orf51_uc002qjk.1_In_Frame_Ins_p.339_339L>LL|C19orf51_uc002qjl.1_In_Frame_Ins_p.460_460L>LL			Q8N9W5	CS051_HUMAN	RecName: Full=UPF0470 protein C19orf51;	393											0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GCTCAGGGATGAGAAGATGGAC	0.569													9	500	---	---	---	---					
RANBP2	5903	broad.mit.edu	37	2	109371629	109371630	+	Splice_Site	INS	-	TC	TC			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr2:109371629_109371630insTC	uc002tem.3	+	17	2509	c.2383_splice	c.e17-2	p.Y795_splice		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2						carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TATTTTTTTTTAGTATTCTCCC	0.312													9	633	---	---	---	---					
ERC2	26059	broad.mit.edu	37	3	55733470	55733472	+	In_Frame_Del	DEL	TGG	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr3:55733470_55733472delTGG	uc003dhr.1	-	16	3037_3039	c.2781_2783delCCA	c.(2779-2784)CACCAT>CAT	p.927_928HH>H	ERC2_uc003dhq.1_RNA	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	927_928	Poly-His.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		gtggtggtgatggtggtggtggt	0.389													7	644	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	33162470	33162470	+	RNA	DEL	G	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162470delG	uc003jhx.2	+	1		c.205delG								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		GGTTGGACGTGGGGGAATTTC	0.527													23	188	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	33162627	33162627	+	RNA	DEL	T	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:33162627delT	uc003jhx.2	+	1		c.362delT								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGTGGTAAGATGTCCCACTAC	0.473													10	108	---	---	---	---					
PPARGC1B	133522	broad.mit.edu	37	5	149216457	149216459	+	In_Frame_Del	DEL	GGA	-	-			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr5:149216457_149216459delGGA	uc003lrc.2	+	8	2481_2483	c.2439_2441delGGA	c.(2437-2442)GGGGAG>GGG	p.E818del	PPARGC1B_uc003lrb.1_In_Frame_Del_p.E818del|PPARGC1B_uc003lrd.2_In_Frame_Del_p.E779del|PPARGC1B_uc003lrf.2_In_Frame_Del_p.E797del|PPARGC1B_uc003lre.1_In_Frame_Del_p.E797del	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	818	Glu-rich.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			aggaagaaggggaggaggaggag	0.458													8	294	---	---	---	---					
KLHL38	340359	broad.mit.edu	37	8	124664765	124664792	+	Frame_Shift_Del	DEL	GCTGGGGGCCAACTGGCTCTGCAAGTAC	-	-	rs7387544	by1000genomes	TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr8:124664765_124664792delGCTGGGGGCCAACTGGCTCTGCAAGTAC	uc003yqs.1	-	1	399_426	c.375_402delGTACTTGCAGAGCCAGTTGGCCCCCAGC	c.(373-402)TCGTACTTGCAGAGCCAGTTGGCCCCCAGCfs	p.S125fs		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	125_134											0						CCAGGCAGTTGCTGGGGGCCAACTGGCTCTGCAAGTACGAGGAGCAGG	0.575													8	141	---	---	---	---					
RLN2	6019	broad.mit.edu	37	9	5304560	5304561	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-7918-01A-11D-2154-08	TCGA-HZ-7918-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	37fb4f51-7109-4ef2-9ef5-9524ff4162dd	c38bb93b-3f01-430e-8066-dad94b77cb5a	g.chr9:5304560_5304561insA	uc003zja.1	-	1	20_21	c.20_21insT	c.(19-21)TTCfs	p.F7fs	RLN2_uc003ziz.1_Frame_Shift_Ins_p.F7fs	NM_134441	NP_604390	P04090	REL2_HUMAN	relaxin 2 isoform 1 preproprotein	7					female pregnancy	extracellular region	hormone activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0201)|Lung(218;0.0987)		CTAGCAGGTGGAAAAAAAACAG	0.535													9	328	---	---	---	---					
