Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL2	114819	broad.mit.edu	37	1	16812113	16812113	+	RNA	SNP	G	A	A	rs142394748	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:16812113G>A	uc001ayt.2	-	7		c.1439C>T			CROCCL2_uc001ays.2_RNA	NR_023386				Homo sapiens mRNA for KIAA1922 protein, partial cds.												0						ATCCTTCTCCGGATTCTGCTT	0.607000													5	71					0	0	0.080935	0	0
LOC387646	387646	broad.mit.edu	37	10	27538942	27538942	+	Missense_Mutation	SNP	T	C	C	rs590142	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr10:27538942T>C	uc001its.2	-	1	2294	c.451A>G	c.(451-453)ATT>GTT	p.I151V		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						TCATTATTAATAGGTTCCGGA	0.537000													17	502					0	0	0.028581	0	0
LOC284232	284232	broad.mit.edu	37	13	19414287	19414287	+	RNA	SNP	G	T	T	rs4037774	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr13:19414287G>T	uc010tcj.1	-	1		c.31823C>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTTTCTTGTTGTAAGGTGCAT	0.274000													7	98					3.86212e-05	4.1035e-05	0.069234	1	0
HEATR4	399671	broad.mit.edu	37	14	73989816	73989816	+	Missense_Mutation	SNP	C	T	T	rs28552441	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr14:73989816C>T	uc010tub.1	-	3	363	c.41G>A	c.(40-42)TGC>TAC	p.C14Y	HEATR4_uc010tua.1_5'UTR	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		CTGATAGAAGCAATGGGGGAG	0.532000													6	112					0	0	0.021553	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053142	85053142	+	RNA	SNP	C	T	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:85053142C>T	uc002bkm.2	-	9		c.1905G>A			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						TTTTTCAATTCCTTGACCCGC	0.393000													11	51					0	0	0.020292	0	0
MED16	10025	broad.mit.edu	37	19	868105	868105	+	Missense_Mutation	SNP	G	A	A	rs146602511	byFrequency	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:868105G>A	uc002lqd.1	-	16	2781	c.2630C>T	c.(2629-2631)CCG>CTG	p.P877L	MED16_uc010drw.1_3'UTR|MED16_uc002lqe.2_3'UTR|MED16_uc002lqf.2_3'UTR	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	877					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGCCGTCACGGACGGTCCTC	0.667000													4	62					0	0	0.009096	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010294	24010294	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:24010294C>G	uc002nrn.2	+	4	754	c.331C>G	c.(331-333)CAG>GAG	p.Q111E		NM_002295	NP_002286			ribosomal protein SA												0						CTTCACTAACCAGATCCAGGC	0.567000													7	172					0	0	0.038147	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715474	99715474	+	RNA	SNP	T	G	G			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:99715474T>G	uc011cuw.1	-	4		c.436A>C				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						GGGCAGAAGGTGTTGGCGCCA	0.577000													8	26					0	0	0.043863	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237231	140237231	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:140237231A>G	uc003lhx.2	+	1	1598	c.1598A>G	c.(1597-1599)CAG>CGG	p.Q533R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.Q533R|PCDHA10_uc011dad.1_Missense_Mutation_p.Q533R	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	533	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTACAGTTCCAGGTGAGCGCG	0.682000													9	224					0	0	0.047766	0	0
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	A	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:20414379G>A	uc003zoe.2	-	5	724	c.465C>T	c.(463-465)AGC>AGT	p.S155S	MLLT3_uc011lne.1_Silent_p.S123S|MLLT3_uc011lnf.1_Silent_p.S152S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Silent_p.S123S	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	155	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.149000			T	MLL	ALL								8	110					0	0	0.069234	0	0
LOC442421	442421	broad.mit.edu	37	9	66499716	66499716	+	Missense_Mutation	SNP	A	G	G	rs141617852	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:66499716A>G	uc004aee.1	+	1	526	c.526A>G	c.(526-528)AAT>GAT	p.N176D	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						CCTGGAGCCCAATCTGCTGGA	0.607000													20	272					0	0	0.055883	0	0
TBC1D2	55357	broad.mit.edu	37	9	100983362	100983362	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:100983362A>C	uc011lvb.1	-	6	1307	c.1127T>G	c.(1126-1128)GTG>GGG	p.V376G	TBC1D2_uc004ayq.2_Missense_Mutation_p.V376G|TBC1D2_uc004ayr.2_Missense_Mutation_p.V158G|TBC1D2_uc004ayo.3_Missense_Mutation_p.V376G	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	376	Potential.|Interaction with RAC1.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		CAGGGCCTCCACCCGCCGGCC	0.697000													6	39					0	0	0.055883	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070950	141070950	+	Missense_Mutation	SNP	A	G	G	rs77284214	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:141070950A>G	uc004com.2	+	4	614	c.353A>G	c.(352-354)CAC>CGC	p.H118R	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						CTCTCAGTCCACCAGCTCATA	0.517000													8	157					0	0	0.093190	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071552	141071552	+	Missense_Mutation	SNP	C	T	T	rs11137403	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:141071552C>T	uc004com.2	+	4	1216	c.955C>T	c.(955-957)CGC>TGC	p.R319C	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						AATGTTCAGGCGCAAGGCCTT	0.532000													11	228					0	0	0.080935	0	0
PHF13	148479	broad.mit.edu	37	1	6680069	6680071	+	In_Frame_Del	DEL	GAA	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:6680069_6680071delGAA	uc001aob.3	+	3	719_721	c.348_350delGAA	c.(346-351)CTGAAG>CTG	p.K121del		NM_153812	NP_722519	Q86YI8	PHF13_HUMAN	PHD finger protein 13	121	Nuclear localization signal (Probable).				cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		cggacaagctgaagaagaagaag	0.498													8	275	---	---	---	---					
AADACL3	126767	broad.mit.edu	37	1	12785492	12785493	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:12785492_12785493insT	uc009vnn.1	+	4	815_816	c.582_583insT	c.(580-585)TACTGTfs	p.Y194fs	AADACL3_uc001aug.1_Frame_Shift_Ins_p.Y124fs	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	194_195							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TCATCTGCTACTGTTTTTTTCA	0.455													7	746	---	---	---	---					
NBPF14	25832	broad.mit.edu	37	1	148012532	148012532	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:148012532delT	uc001eqq.2	-	12	1444	c.1427delA	c.(1426-1428)AAGfs	p.K476fs	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqf.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Frame_Shift_Del_p.K387fs|NBPF14_uc010pae.1_Frame_Shift_Del_p.K143fs|NBPF14_uc010paf.1_Frame_Shift_Del_p.K631fs|NBPF14_uc010pad.1_5'Flank|NBPF14_uc001eqs.1_Intron	NM_015383	NP_056198	Q5TI25	NBPFE_HUMAN	hypothetical protein LOC25832	476	NBPF 5.					cytoplasm				ovary(1)	1	all_hematologic(923;0.032)					GCCAACATGCTTTTCCTCCAA	0.443													7	4896	---	---	---	---					
ZC3H11A	9877	broad.mit.edu	37	1	203786225	203786225	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:203786225delT	uc001hac.2	+	5	643	c.27delT	c.(25-27)TATfs	p.Y9fs	ZC3H11A_uc001had.2_Frame_Shift_Del_p.Y9fs|ZC3H11A_uc001hae.2_Frame_Shift_Del_p.Y9fs|ZC3H11A_uc001haf.2_Frame_Shift_Del_p.Y9fs|ZC3H11A_uc010pqm.1_Intron|ZC3H11A_uc001hag.1_Frame_Shift_Del_p.Y9fs	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	9	C3H1-type 1.						nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AAGACTGCTATTTTTTTTTCT	0.373													7	370	---	---	---	---					
TNKS2	80351	broad.mit.edu	37	10	93601945	93601946	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr10:93601945_93601946insA	uc001khp.2	+	16	2153_2154	c.1856_1857insA	c.(1855-1857)ACAfs	p.T619fs		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	619	ANK 12.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				GCAGACCCTACAAAAAAAAACA	0.391													11	199	---	---	---	---					
SPON1	10418	broad.mit.edu	37	11	14276276	14276277	+	Splice_Site	DEL	GT	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:14276276_14276277delGT	uc001mle.2	+	9	1630	c.1092_splice	c.e9+1	p.E364_splice		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein						cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		GACCTATGAGGTGTGTGTGTGT	0.594													7	150	---	---	---	---					
SLC22A9	114571	broad.mit.edu	37	11	63149668	63149669	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:63149668_63149669insA	uc001nww.2	+	6	1260_1261	c.992_993insA	c.(991-993)GCAfs	p.A331fs	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	331	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						CTGGAGGCAGCACAAAAAAAAA	0.406													7	529	---	---	---	---					
DDX10	1662	broad.mit.edu	37	11	108559769	108559769	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:108559769delT	uc001pkm.2	+	7	1020	c.955delT	c.(955-957)TTTfs	p.F319fs	DDX10_uc001pkl.1_Frame_Shift_Del_p.F319fs	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	319	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		GAGCATTGTATTTTTTTCCAG	0.353			T	NUP98	AML*								9	1026	---	---	---	---					
CADM1	23705	broad.mit.edu	37	11	115080312	115080314	+	In_Frame_Del	DEL	TGG	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:115080312_115080314delTGG	uc001ppi.3	-	8	1187_1189	c.1058_1060delCCA	c.(1057-1062)ACCATC>ATC	p.T353del	CADM1_uc001ppf.3_Intron|CADM1_uc001ppk.3_Intron|CADM1_uc001ppj.3_Intron|CADM1_uc001pph.3_In_Frame_Del_p.T105del	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	353	Extracellular (Potential).			PPTTIPPPTTTTTTTTTTTTTILTIIT -> TTATTEPAVH GLTQLPNSAEELDSEDLS (in Ref. 3; BAC11657).	adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		atggtaaggatggtggtggtggt	0.266													7	231	---	---	---	---					
CD163L1	283316	broad.mit.edu	37	12	7556270	7556270	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:7556270delT	uc001qsy.2	-	6	1295	c.1269delA	c.(1267-1269)AAAfs	p.K423fs	CD163L1_uc010sge.1_Frame_Shift_Del_p.K433fs	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	423	SRCR 4.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CATTACTAGGTTTAGCACGAC	0.458													7	536	---	---	---	---					
POLE	5426	broad.mit.edu	37	12	133220099	133220100	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:133220099_133220100delCA	uc001uks.1	-	34	4381_4382	c.4337_4338delTG	c.(4336-4338)GTGfs	p.V1446fs	POLE_uc001ukq.1_5'Flank|POLE_uc001ukr.1_Frame_Shift_Del_p.V250fs|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Frame_Shift_Del_p.V1419fs	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1446					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GTTTATTGACCACACACACACA	0.604								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					11	837	---	---	---	---					
IL25	64806	broad.mit.edu	37	14	23845057	23845058	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr14:23845057_23845058delTG	uc001wjr.2	+	2	812_813	c.502_503delTG	c.(502-504)TGTfs	p.C168fs	IL25_uc001wjq.2_Frame_Shift_Del_p.C152fs|CMTM5_uc001wjs.2_5'Flank|CMTM5_uc001wjt.2_5'Flank|CMTM5_uc010akm.2_5'Flank|CMTM5_uc010akn.2_5'Flank|CMTM5_uc001wju.2_5'Flank|CMTM5_uc010ako.2_5'Flank	NM_022789	NP_073626	Q9H293	IL25_HUMAN	interleukin 25 isoform 1 precursor	168					inflammatory response	extracellular space|membrane	cytokine activity|interleukin-17E receptor binding			ovary(1)	1	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.00665)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0396)		TTCCTTAGCTTGTGTGTGTGTG	0.604													8	427	---	---	---	---					
SRP14	6727	broad.mit.edu	37	15	40328597	40328599	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:40328597_40328599delTGC	uc001zkq.2	-	5	418_420	c.346_348delGCA	c.(346-348)GCAdel	p.A116del	SRP14_uc001zkr.2_3'UTR|uc001zks.1_5'Flank	NM_003134	NP_003125	P37108	SRP14_HUMAN	signal recognition particle 14kDa (homologous	116	Ala/Thr-rich.				negative regulation of translational elongation|response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|endoplasmic reticulum signal peptide binding|protein binding				0		all_cancers(109;7.56e-18)|all_epithelial(112;4.02e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.84e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0505)		ctgcggcaggtgctgctgctgct	0.227													7	270	---	---	---	---					
LEO1	123169	broad.mit.edu	37	15	52258134	52258134	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:52258134delT	uc002abo.2	-	2	642	c.626delA	c.(625-627)AAGfs	p.K209fs	LEO1_uc010bfd.2_Frame_Shift_Del_p.K209fs	NM_138792	NP_620147	Q8WVC0	LEO1_HUMAN	Leo1, Paf1/RNA polymerase II complex component,	209	Asp-rich.				histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding				0				all cancers(107;0.00264)		AGAATTAGCCTTTTCCTCCTC	0.433													7	1034	---	---	---	---					
ATP2A1	487	broad.mit.edu	37	16	28913639	28913640	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:28913639_28913640insC	uc002dro.1	+	17	2640_2641	c.2456_2457insC	c.(2455-2457)CGCfs	p.R819fs	uc010vct.1_Intron|ATP2A1_uc002drn.1_Frame_Shift_Ins_p.R819fs|ATP2A1_uc002drp.1_Frame_Shift_Ins_p.R694fs	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	819	Cytoplasmic (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ATCATGGACCGCCCCCCCCGGA	0.658													12	416	---	---	---	---					
TRPV2	51393	broad.mit.edu	37	17	16335490	16335492	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:16335490_16335492delTGC	uc002gpy.2	+	12	2232_2234	c.1865_1867delTGC	c.(1864-1869)GTGCTG>GTG	p.L627del	TRPV2_uc002gpz.2_In_Frame_Del_p.L197del	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	627	Helical; (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CGCGGCATGGTGCTGCTGCTGCT	0.596													12	270	---	---	---	---					
KRTAP4-1	85285	broad.mit.edu	37	17	39340796	39340852	+	Splice_Site	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	-	rs71155126	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:39340796_39340852delCGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	uc002hwe.3	-	2	287	c.246_splice	c.e2-1	p.S82_splice		NM_033060	NP_149049	Q9BYQ7	KRA41_HUMAN	keratin associated protein 4-1							keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			ACAGAGTGGACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGGCGGCAGCAGC	0.646													11	214	---	---	---	---					
PRR11	55771	broad.mit.edu	37	17	57247170	57247171	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:57247170_57247171insA	uc002ixf.1	+	2	136_137	c.57_58insA	c.(55-60)TTCAAAfs	p.F19fs	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	19_20										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					AAAGATTATTCAAAAAAAAAGA	0.347													7	293	---	---	---	---					
TNFSF9	8744	broad.mit.edu	37	19	6531149	6531151	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:6531149_6531151delGCT	uc002mfh.2	+	1	140_142	c.102_104delGCT	c.(100-105)GGGCTG>GGG	p.L41del		NM_003811	NP_003802	P41273	TNFL9_HUMAN	tumor necrosis factor (ligand) superfamily,	41	Poly-Leu.|Helical; Signal-anchor for type II membrane protein; (Potential).				apoptosis|cell proliferation|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						TGGTCGCGGGgctgctgctgctg	0.660													7	149	---	---	---	---					
FUZ	80199	broad.mit.edu	37	19	50310483	50310485	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:50310483_50310485delCAG	uc002ppq.1	-	11	1285_1287	c.1180_1182delCTG	c.(1180-1182)CTGdel	p.L394del	FUZ_uc002ppr.1_In_Frame_Del_p.L294del|FUZ_uc002pps.1_RNA|FUZ_uc002ppt.1_RNA|FUZ_uc002ppu.1_In_Frame_Del_p.L358del|FUZ_uc002ppv.1_In_Frame_Del_p.L344del	NM_025129	NP_079405	Q9BT04	FUZZY_HUMAN	fuzzy homolog	394	Leu-rich.				cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		TCTGGGGAGACAGCAGCAGCAGC	0.635													8	197	---	---	---	---					
RPL23AP32	56969	broad.mit.edu	37	2	54756587	54756588	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:54756587_54756588insA	uc010yot.1	+	1	229_230	c.105_106insA	c.(103-108)CACAAAfs	p.H35fs	SPTBN1_uc002rxu.2_Intron|SPTBN1_uc002rxv.1_Intron	NR_002229				SubName: Full=Putative uncharacterized protein DKFZp547I014;												0						TCCACGGCCACAAAAAAAAGAA	0.540													7	301	---	---	---	---					
ITPRIPL1	150771	broad.mit.edu	37	2	96992793	96992795	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:96992793_96992795delGAG	uc002svx.2	+	3	759_761	c.424_426delGAG	c.(424-426)GAGdel	p.E147del	ITPRIPL1_uc010yuk.1_In_Frame_Del_p.E139del|ITPRIPL1_uc002svy.2_In_Frame_Del_p.E155del|ITPRIPL1_uc010yul.1_In_Frame_Del_p.E139del	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	147	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						TTCCAGCAGTGAGGAGGAGGAGG	0.532													8	254	---	---	---	---					
SFRS15	57466	broad.mit.edu	37	21	33044257	33044259	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr21:33044257_33044259delGCT	uc002ypd.2	-	20	3323_3325	c.2897_2899delAGC	c.(2896-2901)CAGCCA>CCA	p.Q966del	SFRS15_uc002ype.2_In_Frame_Del_p.Q944del|SFRS15_uc010glu.2_In_Frame_Del_p.Q951del	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	966	Poly-Gln.					nucleus	nucleotide binding|RNA binding				0						GATGGTGgtggctgctgctgctg	0.291													11	394	---	---	---	---					
TRIOBP	11078	broad.mit.edu	37	22	38120029	38120031	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:38120029_38120031delCCT	uc003atr.2	+	7	1737_1739	c.1466_1468delCCT	c.(1465-1470)GCCTCC>GCC	p.S491del	TRIOBP_uc003atu.2_In_Frame_Del_p.S319del|TRIOBP_uc003atq.1_In_Frame_Del_p.S491del|TRIOBP_uc003ats.1_In_Frame_Del_p.S319del	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	491					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AATCCCAGAGCCTCCTCTCCCAG	0.601													14	573	---	---	---	---					
BIK	638	broad.mit.edu	37	22	43525245	43525247	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:43525245_43525247delGCT	uc003bdk.2	+	5	477_479	c.417_419delGCT	c.(415-420)GCGCTG>GCG	p.L144del		NM_001197	NP_001188	Q13323	BIK_HUMAN	BCL2-interacting killer	144	Leucine-zipper (Potential).|Helical; (Potential).				apoptosis|induction of apoptosis|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	endomembrane system|integral to membrane					0		Ovarian(80;0.0694)				tgctgctggcgctgctgctgctg	0.562													8	283	---	---	---	---					
HERC5	51191	broad.mit.edu	37	4	89381265	89381266	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:89381265_89381266insA	uc003hrt.2	+	3	562_563	c.409_410insA	c.(409-411)GAAfs	p.E137fs		NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	137	RCC1 1.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		CATTTTACAAGAAAAAAAAATA	0.272													7	135	---	---	---	---					
CDH10	1008	broad.mit.edu	37	5	24492973	24492973	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:24492973delA	uc003jgr.1	-	10	1909	c.1577delT	c.(1576-1578)TTCfs	p.F526fs	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	526	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGCTAAACTGAAAAAAAATTT	0.313										HNSCC(23;0.051)			8	843	---	---	---	---					
PPP1R10	5514	broad.mit.edu	37	6	30572795	30572795	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:30572795delT	uc003nqn.1	-	11	1482	c.930delA	c.(928-930)AAAfs	p.K310fs	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	310	Interaction with TOX4 (By similarity).|Poly-Lys.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GTGACAGTACTTTTTTTTTCT	0.448													7	197	---	---	---	---					
CYB5R4	51167	broad.mit.edu	37	6	84634230	84634231	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:84634230_84634231insA	uc003pkf.2	+	10	865_866	c.733_734insA	c.(733-735)CAAfs	p.Q245fs		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	245	CS.				cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		GATTGTTCTACAAAAAAAAGAG	0.337													7	292	---	---	---	---					
C7orf16	10842	broad.mit.edu	37	7	31735179	31735179	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr7:31735179delA	uc003tcl.2	+	3	337	c.179delA	c.(178-180)CAAfs	p.Q60fs	C7orf16_uc011kaf.1_Intron	NM_006658	NP_006649	O96001	GSUB_HUMAN	G-substrate isoform 1	60					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction				ovary(2)|central_nervous_system(1)	3			GBM - Glioblastoma multiforme(11;0.216)			GAGTCAGACCAAAAAAAACCA	0.438													9	546	---	---	---	---					
NPM2	10361	broad.mit.edu	37	8	21892020	21892021	+	Splice_Site	INS	-	A	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:21892020_21892021insA	uc003xab.2	+	7	1190	c.532_splice	c.e7-1	p.K178_splice	NPM2_uc003xac.2_Splice_Site_p.K178_splice|NPM2_uc003xad.2_Splice_Site_p.K178_splice|NPM2_uc003xae.2_Splice_Site_p.K178_splice|NPM2_uc003xaf.2_Splice_Site_p.E122_splice	NM_182795	NP_877724	Q86SE8	NPM2_HUMAN	nucleoplasmin 2						chromatin remodeling|embryo development|oocyte differentiation|positive regulation of meiosis|regulation of exit from mitosis|single fertilization	cytoplasmic chromatin|nuclear chromatin	histone binding|nucleic acid binding				0				Colorectal(74;8.48e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0618)		TTGGTTCCCAGAAAAAAAAGCT	0.292													8	643	---	---	---	---					
PCMTD1	115294	broad.mit.edu	37	8	52733063	52733063	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:52733063delT	uc003xqx.3	-	6	1263	c.922delA	c.(922-924)ATGfs	p.M308fs	PCMTD1_uc011ldm.1_Frame_Shift_Del_p.M178fs|PCMTD1_uc003xqw.3_Frame_Shift_Del_p.M308fs|PCMTD1_uc011ldn.1_Frame_Shift_Del_p.M120fs|PCMTD1_uc010lya.2_Frame_Shift_Del_p.M232fs	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	308						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				tcctcttccattttttcatcc	0.284													11	367	---	---	---	---					
COL22A1	169044	broad.mit.edu	37	8	139809072	139809072	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:139809072delT	uc003yvd.2	-	12	2033	c.1586delA	c.(1585-1587)AAGfs	p.K529fs		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	529	Pro-rich.|Gly-rich.|Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CTTTTCACCCTTTTCCCCTTG	0.463										HNSCC(7;0.00092)			7	999	---	---	---	---					
FOXD4	2298	broad.mit.edu	37	9	117406	117407	+	Frame_Shift_Ins	INS	-	G	G			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:117406_117407insG	uc003zfz.2	-	1	1011_1012	c.713_714insC	c.(712-714)CCGfs	p.P238fs		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	238	Pro-rich.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CTGGCTGCGGCGGGGCAGGGGC	0.743													7	364	---	---	---	---					
PRDM12	59335	broad.mit.edu	37	9	133543701	133543702	+	Splice_Site	DEL	GT	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:133543701_133543702delGT	uc004bzt.1	+	3	630	c.570_splice	c.e3+1	p.E190_splice		NM_021619	NP_067632	Q9H4Q4	PRD12_HUMAN	PR domain containing 12						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		GGCCATTGAGGTGTGTGTGTGT	0.594													17	271	---	---	---	---					
GUCY2F	2986	broad.mit.edu	37	X	108619355	108619355	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chrX:108619355delT	uc004eod.3	-	18	3468	c.3192delA	c.(3190-3192)AAAfs	p.K1064fs	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	1064	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TCATGAAGCCTTTTTTCCCAA	0.418													8	859	---	---	---	---					
CUL4B	8450	broad.mit.edu	37	X	119694117	119694119	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chrX:119694117_119694119delGAG	uc004esw.2	-	3	866_868	c.429_431delCTC	c.(427-432)TCCTCA>TCA	p.143_144SS>S	CUL4B_uc004esv.2_In_Frame_Del_p.125_126SS>S	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	143_144	Ser-rich.				cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TGGTGAAGATgaggaggaggagg	0.424													7	285	---	---	---	---					
