Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ARID1A	8289	broad.mit.edu	37	1	27101408	27101408	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:27101408A>C	uc001bmv.1	+	18	5063	c.4690A>C	c.(4690-4692)ATG>CTG	p.M1564L	ARID1A_uc001bmt.1_Missense_Mutation_p.M1563L|ARID1A_uc001bmu.1_Intron|ARID1A_uc001bmw.1_Missense_Mutation_p.M1181L|ARID1A_uc001bmx.1_Missense_Mutation_p.M410L|ARID1A_uc009vsm.1_Intron|ARID1A_uc009vsn.1_5'UTR	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1564					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TGTGCCCCCCATGACAAGGCC	0.612000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								7	170					0	0	0.001855	0	0
RSPO1	284654	broad.mit.edu	37	1	38095330	38095330	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:38095330G>A	uc001cbl.1	-	4	792	c.4C>T	c.(4-6)CGG>TGG	p.R2W	RSPO1_uc001cbm.1_Missense_Mutation_p.R2W|RSPO1_uc009vvf.1_Intron|RSPO1_uc009vvg.1_Missense_Mutation_p.R2W	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	2					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AGCCCAAGCCGCATAGTCACG	0.642000													4	172					0	0	0.000248	0	0
TIE1	7075	broad.mit.edu	37	1	43770760	43770760	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:43770760C>T	uc001ciu.2	+	2	376	c.297C>T	c.(295-297)CTC>CTT	p.L99L	TIE1_uc010okd.1_Silent_p.L99L|TIE1_uc010oke.1_Silent_p.L54L|TIE1_uc009vwq.2_Silent_p.L99L|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'Flank|TIE1_uc010oka.1_Silent_p.L99L|TIE1_uc010okb.1_Silent_p.L99L|TIE1_uc010okc.1_Silent_p.L99L	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	99	Extracellular (Potential).|Ig-like C2-type 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCTCGGACCTCGTGGGCGTCT	0.711000													3	85					0	0	0.000602	0	0
CYP4A22	284541	broad.mit.edu	37	1	47606488	47606488	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:47606488C>T	uc001cqv.1	+	2	283	c.232C>T	c.(232-234)CGG>TGG	p.R78W	CYP4A22_uc009vyo.2_Missense_Mutation_p.R78W|CYP4A22_uc009vyp.2_Missense_Mutation_p.R78W	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	78						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GATTCAGGAACGGGTGAAGAC	0.483000													5	455					0	0	0.001984	0	0
GLIS1	148979	broad.mit.edu	37	1	53975636	53975636	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:53975636G>A	uc001cvr.1	-	8	1990	c.1423C>T	c.(1423-1425)CCC>TCC	p.P475S		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	475	Pro-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GAGGATGGGGGCAGCGGCGGT	0.692000													4	63					0	0	0.000248	0	0
KANK4	163782	broad.mit.edu	37	1	62734090	62734090	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:62734090G>A	uc001dah.3	-	5	2477	c.2100C>T	c.(2098-2100)GAC>GAT	p.D700D	KANK4_uc001dai.3_Silent_p.D72D|KANK4_uc001dag.3_Silent_p.D56D	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	700										ovary(3)|skin(2)|lung(1)	6						GATCTGGGCCGTCACACTTCT	0.592000													4	308					0	0	0.000602	0	0
LPPR4	9890	broad.mit.edu	37	1	99772446	99772446	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:99772446C>T	uc001dse.2	+	7	2278	c.2172C>T	c.(2170-2172)CGC>CGT	p.R724R	LPPR4_uc010oue.1_Silent_p.R666R	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	724							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		CTTCTTCCCGCGACTCCACCC	0.507000													6	154					0	0	0.006214	0	0
KCNA10	3744	broad.mit.edu	37	1	111060380	111060380	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:111060380G>A	uc001dzt.1	-	1	1418	c.1030C>T	c.(1030-1032)CGC>TGC	p.R344C		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	344	Helical; Voltage-sensor; Name=Segment S4; (Potential).					voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		CTCACCAGGCGGATGATCCTC	0.577000													11	663					0	0	0.002450	0	0
CGN	57530	broad.mit.edu	37	1	151509274	151509274	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:151509274C>T	uc009wmw.2	+	20	3519	c.3375C>T	c.(3373-3375)GAC>GAT	p.D1125D	CGN_uc010pde.1_Silent_p.D119D	NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	1119	Potential.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			AGCGACTGGACGGCCTGAGGA	0.552000													4	285					0	0	0.000248	0	0
RPTN	126638	broad.mit.edu	37	1	152128617	152128617	+	Missense_Mutation	SNP	T	C	C	rs12117644		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:152128617T>C	uc001ezs.1	-	3	1023	c.958A>G	c.(958-960)AGT>GGT	p.S320G		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	320	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCCGTCTGACTGTAGTGGGAA	0.507000													6	912					0	0	0.000978	0	0
RPTN	126638	broad.mit.edu	37	1	152128689	152128689	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:152128689C>T	uc001ezs.1	-	3	951	c.886G>A	c.(886-888)GGT>AGT	p.G296S		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	296	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCCGTCTGACCGTAGTGGGAA	0.498000													9	902					0	0	0.008291	0	0
FLG2	388698	broad.mit.edu	37	1	152324032	152324032	+	Missense_Mutation	SNP	C	G	G	rs145838203	byFrequency	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:152324032C>G	uc001ezw.3	-	3	6303	c.6230G>C	c.(6229-6231)GGA>GCA	p.G2077A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2077							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGGTATCTCCTGTCTGTCC	0.532000													5	929					0	0	0.001984	0	0
FLG2	388698	broad.mit.edu	37	1	152326017	152326017	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:152326017C>A	uc001ezw.3	-	3	4318	c.4245G>T	c.(4243-4245)AGG>AGT	p.R1415S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1415							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCAGTTGTCCTGGACCCTC	0.527000													8	853					9.31168e-06	1.24277e-05	0.001855	1	0
DENND4B	9909	broad.mit.edu	37	1	153907303	153907303	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:153907303C>T	uc001fdd.1	-	18	3107	c.2706G>A	c.(2704-2706)CAG>CAA	p.Q902Q	uc001fdc.1_RNA	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	902	Gln-rich.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			gctgctgctgctgttgctgct	0.468000													4	248					0	0	0.001168	0	0
PBXIP1	57326	broad.mit.edu	37	1	154918547	154918547	+	Silent	SNP	G	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:154918547G>T	uc001ffr.2	-	10	1662	c.1603C>A	c.(1603-1605)CGA>AGA	p.R535R	PBXIP1_uc001ffs.2_Silent_p.R506R|PBXIP1_uc010pep.1_Silent_p.R380R	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	535					cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGGCCCTGTCGCTTGCCCTCC	0.602000													6	787					0.000602214	0.000788395	0.000602	1	0
PBXIP1	57326	broad.mit.edu	37	1	154920764	154920764	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:154920764C>T	uc001ffr.2	-	6	547	c.488G>A	c.(487-489)CGG>CAG	p.R163Q	PBXIP1_uc001ffs.2_Missense_Mutation_p.R134Q|PBXIP1_uc010pep.1_Missense_Mutation_p.R8Q	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	163	Poly-Arg.				cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CTCCCGGCCCCGCCGTCTCCG	0.687000													3	46					0	0	0.004672	0	0
TAGLN2	8407	broad.mit.edu	37	1	159888604	159888604	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:159888604G>A	uc001fum.1	-	4	636	c.586C>T	c.(586-588)CGC>TGC	p.R196C	CCDC19_uc001ful.2_Intron|TAGLN2_uc001fun.1_Missense_Mutation_p.R196C|TAGLN2_uc001fuo.1_3'UTR	NM_003564	NP_003555	P37802	TAGL2_HUMAN	transgelin 2	196	Calponin-like.				muscle organ development	nuclear membrane|plasma membrane	protein binding				0	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AGGATCTGGCGTGGCATCCCG	0.552000													10	549					0	0	0.002450	0	0
ATP1A2	477	broad.mit.edu	37	1	160098456	160098456	+	Silent	SNP	G	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:160098456G>C	uc001fvc.2	+	9	1164	c.1032G>C	c.(1030-1032)CTG>CTC	p.L344L	ATP1A2_uc001fvb.2_Silent_p.L344L|ATP1A2_uc010piz.1_Silent_p.L189L|ATP1A2_uc001fvd.2_Silent_p.L80L|ATP1A2_uc009wtg.1_Silent_p.L32L	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	344	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GCCTGACCCTGACAGCCAAGC	0.572000													7	319					0	0	0.004482	0	0
HSPA7	3311	broad.mit.edu	37	1	161576971	161576971	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:161576971G>C	uc010pkp.1	+	1	1123	c.891G>C	c.(889-891)AAG>AAC	p.K297N		NR_024151				RecName: Full=Putative heat shock 70 kDa protein 7; AltName: Full=Heat shock 70 kDa protein B;												0						ACTTCTACAAGTCCATCACTC	0.647000													5	94					0	0	0.000602	0	0
HSD17B7	51478	broad.mit.edu	37	1	162769603	162769603	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:162769603G>A	uc001gci.2	+	5	613	c.518G>A	c.(517-519)AGT>AAT	p.S173N	HSD17B7_uc009wuv.2_RNA	NM_016371	NP_057455	P56937	DHB7_HUMAN	hydroxysteroid (17-beta) dehydrogenase 7	173	Extracellular (Potential).				cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	3-keto sterol reductase activity|estradiol 17-beta-dehydrogenase activity			ovary(1)	1	all_hematologic(112;0.115)				NADH(DB00157)	TCATCTCGCAGTGCAAGGAAA	0.458000													5	217					0	0	0.001168	0	0
F5	2153	broad.mit.edu	37	1	169510354	169510354	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:169510354A>G	uc001ggg.1	-	13	4119	c.3974T>C	c.(3973-3975)CTC>CCC	p.L1325P		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1325	2-16.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TGTATGGCTGAGGTCTGGAGA	0.512000													5	898					0	0	0.001855	0	0
F5	2153	broad.mit.edu	37	1	169510502	169510502	+	Missense_Mutation	SNP	G	T	T	rs140018525	byFrequency	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:169510502G>T	uc001ggg.1	-	13	3971	c.3826C>A	c.(3826-3828)CTT>ATT	p.L1276I		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1276	2-11.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGGAGAAAGGGGCATCTGA	0.502000													12	865					3.80469e-20	5.26214e-20	0.001786	1	0
C1orf55	163859	broad.mit.edu	37	1	226180632	226180632	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:226180632G>C	uc001hpu.3	-	3	363	c.310C>G	c.(310-312)CTC>GTC	p.L104V	C1orf55_uc001hpv.2_Missense_Mutation_p.L104V	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	104										lung(1)	1	Breast(184;0.197)					CTTCCACTGAGATCCCGACAA	0.433000													3	180					0	0	0.000248	0	0
OR2L13	284521	broad.mit.edu	37	1	248263381	248263381	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:248263381A>G	uc001ids.2	+	3	1041	c.704A>G	c.(703-705)AAG>AGG	p.K235R		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			GGGAGAAAAAAGGCCTTCACC	0.453000													3	247					0	0	0.004672	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318441	30318441	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:30318441G>A	uc001iux.2	-	2	695	c.636C>T	c.(634-636)TAC>TAT	p.Y212Y	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.Y74Y|KIAA1462_uc009xle.1_Silent_p.Y212Y	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	212										ovary(4)	4						GAATGAATGGGTACAGGTCTT	0.498000													7	637					0	0	0.003080	0	0
SH2D4B	387694	broad.mit.edu	37	10	82331259	82331259	+	Silent	SNP	G	C	C	rs151180626		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:82331259G>C	uc001kck.1	+	3	850	c.420G>C	c.(418-420)GCG>GCC	p.A140A	SH2D4B_uc001kcl.1_Silent_p.A91A	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1	139	Glu-rich.										0			Colorectal(32;0.229)			GGATCTTGGCGGAGAAGTGGA	0.572000													4	235					0	0	0.000248	0	0
PDZD7	79955	broad.mit.edu	37	10	102778797	102778797	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:102778797G>A	uc001kso.1	-	8	1321	c.1106C>T	c.(1105-1107)GCC>GTC	p.A369V	PDZD7_uc001ksn.2_Missense_Mutation_p.A369V	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	369						cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		CGTCTGCATGGCTGTGTCCGC	0.741000											OREG0020453	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	26					0	0	0.004672	0	0
DMBT1	1755	broad.mit.edu	37	10	124399679	124399679	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:124399679G>A	uc001lgk.1	+	52	6785	c.6679G>A	c.(6679-6681)GAC>AAC	p.D2227N	DMBT1_uc001lgl.1_Missense_Mutation_p.D2217N|DMBT1_uc001lgm.1_Missense_Mutation_p.D1599N|DMBT1_uc009xzz.1_Missense_Mutation_p.D2226N|DMBT1_uc010qtx.1_Missense_Mutation_p.D947N|DMBT1_uc009yab.1_Missense_Mutation_p.D930N|DMBT1_uc009yac.1_Missense_Mutation_p.D521N	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2227	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CACCTGGGTCGACACCATGTA	0.478000													11	563					0	0	0.008291	0	0
TSPAN4	7106	broad.mit.edu	37	11	864455	864455	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:864455C>G	uc001lsd.1	+	5	483	c.274C>G	c.(274-276)CTG>GTG	p.L92V	TSPAN4_uc001lse.1_Missense_Mutation_p.L28V|TSPAN4_uc001lsf.1_Missense_Mutation_p.L92V|TSPAN4_uc001lsg.1_Missense_Mutation_p.L92V|TSPAN4_uc001lsh.1_Missense_Mutation_p.L92V|TSPAN4_uc001lsi.1_Missense_Mutation_p.L92V|TSPAN4_uc001lsj.1_Missense_Mutation_p.L92V	NM_003271	NP_003262	O14817	TSN4_HUMAN	tetraspanin 4 isoform a	92	Helical; (Potential).				protein complex assembly	integral to plasma membrane				breast(1)	1		all_cancers(49;2.64e-08)|all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)		all cancers(45;4.32e-25)|Epithelial(43;3.29e-24)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCTGCTGCTGCTGGTGTTCCT	0.672000													4	549					0	0	0.000248	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													5	249					0	0	0.001168	0	0
OR51F2	119694	broad.mit.edu	37	11	4842670	4842670	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:4842670A>G	uc010qyn.1	+	1	55	c.55A>G	c.(55-57)ACC>GCC	p.T19A		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCTCAATAATACCATTGCTGA	0.433000													5	828					0	0	0.001984	0	0
KCNC1	3746	broad.mit.edu	37	11	17793331	17793331	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:17793331C>T	uc001mnk.3	+	2	745	c.690C>T	c.(688-690)GGC>GGT	p.G230G	KCNC1_uc009yhc.1_Silent_p.G230G	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	230						voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						TTCGCAATGGCACGCAAGTGC	0.577000													6	382					0	0	0.001168	0	0
HPS5	11234	broad.mit.edu	37	11	18332345	18332345	+	Silent	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:18332345T>C	uc001mod.1	-	5	698	c.420A>G	c.(418-420)GTA>GTG	p.V140V	HPS5_uc001moe.1_Silent_p.V26V|HPS5_uc001mof.1_Silent_p.V26V	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	140						cytosol				ovary(1)|pancreas(1)|skin(1)	3						CATGATCACCTACAAAAACTC	0.433000									Hermansky-Pudlak_syndrome				3	255					0	0	0.004672	0	0
TSG101	7251	broad.mit.edu	37	11	18505466	18505466	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:18505466T>C	uc001mor.2	-	8	920	c.794A>G	c.(793-795)AAG>AGG	p.K265R		NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	265	Potential.				cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						CTGGTGACCCTTTTTCAGGTC	0.438000													6	836					0	0	0.001984	0	0
TRAF6	7189	broad.mit.edu	37	11	36518686	36518686	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:36518686G>A	uc001mwr.1	-	5	918	c.578C>T	c.(577-579)GCT>GTT	p.A193V	TRAF6_uc001mws.1_Missense_Mutation_p.A193V	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	193	Interaction with TAX1BP1.|TRAF-type 1.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				CATTGATGCAGCACAGTTGTC	0.378000													5	209					0	0	0.000602	0	0
MADD	8567	broad.mit.edu	37	11	47296667	47296667	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:47296667C>T	uc001ner.1	+	3	807	c.616C>T	c.(616-618)CGC>TGC	p.R206C	MADD_uc001neq.2_Missense_Mutation_p.R206C|MADD_uc001nev.1_Missense_Mutation_p.R206C|MADD_uc001nes.1_Missense_Mutation_p.R206C|MADD_uc001net.1_Missense_Mutation_p.R206C|MADD_uc009yln.1_Missense_Mutation_p.R206C|MADD_uc001neu.1_Missense_Mutation_p.R206C|MADD_uc001nex.2_Missense_Mutation_p.R206C|MADD_uc001nez.2_Missense_Mutation_p.R206C|MADD_uc001new.2_Missense_Mutation_p.R206C	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	206	DENN.				activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CTGTAGTGAGCGCCTTCTGGG	0.522000													8	282					0	0	0.003080	0	0
OR4C16	219428	broad.mit.edu	37	11	55339612	55339612	+	Silent	SNP	G	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:55339612G>T	uc010rih.1	+	1	9	c.9G>T	c.(7-9)CTG>CTT	p.L3L		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				CCATGCAACTGAATAATAATG	0.373000													6	342					0.000157383	0.000206829	0.003080	1	0
PRPF19	27339	broad.mit.edu	37	11	60666630	60666630	+	Silent	SNP	G	A	A	rs3750984		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:60666630G>A	uc001nqf.2	-	11	1182	c.975C>T	c.(973-975)TCC>TCT	p.S325S		NM_014502	NP_055317	Q9UMS4	PRP19_HUMAN	PRP19/PSO4 pre-mRNA processing factor 19	325	WD 3.				DNA repair|protein polyubiquitination|spliceosome assembly	catalytic step 2 spliceosome|nuclear speck|spindle|ubiquitin ligase complex	DNA binding|identical protein binding|ubiquitin-ubiquitin ligase activity			ovary(1)	1						CCTGATCATCGGAGGAGCTCA	0.612000											OREG0020994	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	69					0	0	0.004672	0	0
RPLP0P2	113157	broad.mit.edu	37	11	61405030	61405030	+	Silent	SNP	T	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:61405030T>A	uc001nrz.1	+	5	1634	c.879T>A	c.(877-879)GCT>GCA	p.A293A		NR_002775				SubName: Full=cDNA FLJ51469, highly similar to 60S acidic ribosomal protein P0;												0						ctgctgctgctgcAGCCCCAG	0.423000													4	113					0	0	0.000248	0	0
AHNAK	79026	broad.mit.edu	37	11	62296070	62296070	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:62296070A>G	uc001ntl.2	-	5	6119	c.5819T>C	c.(5818-5820)GTG>GCG	p.V1940A	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1940					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CGACACATCCACATCCCCTTT	0.502000													11	865					0	0	0.001368	0	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249545	71249545	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:71249545C>T	uc001oqr.1	+	1	475	c.444C>T	c.(442-444)TGC>TGT	p.C148C		NM_021046	NP_066384	O75690	KRA58_HUMAN	keratin associated protein 5-8	148	9 X 4 AA repeats of C-C-X-P.|7.					extracellular region|keratin filament	structural constituent of epidermis				0						AGTCCAGCTGCTGTAAGCCCT	0.607000													7	876					0	0	0.003080	0	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249558	71249558	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:71249558T>A	uc001oqr.1	+	1	488	c.457T>A	c.(457-459)TGC>AGC	p.C153S		NM_021046	NP_066384	O75690	KRA58_HUMAN	keratin associated protein 5-8	153	9 X 4 AA repeats of C-C-X-P.					extracellular region|keratin filament	structural constituent of epidermis				0						TAAGCCCTGCTGCTGCTCTTC	0.602000													7	880					0	0	0.006214	0	0
YAP1	10413	broad.mit.edu	37	11	102033277	102033277	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:102033277G>A	uc001pgt.2	+	3	1033	c.663G>A	c.(661-663)CAG>CAA	p.Q221Q	YAP1_uc001pgs.2_Silent_p.Q221Q|YAP1_uc001pgu.2_Silent_p.Q221Q|YAP1_uc001pgv.2_Silent_p.Q221Q|YAP1_uc010ruo.1_Silent_p.Q43Q|YAP1_uc001pgw.2_Silent_p.Q43Q	NM_001130145	NP_001123617	P46937	YAP1_HUMAN	Yes-associated protein 1, 65kDa isoform 1	221					cell proliferation|cellular response to gamma radiation|contact inhibition|hippo signaling cascade|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_cancers(8;0.000575)|all_epithelial(12;0.00564)	Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.00936)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0189)		CACCAGTGCAGCAGAATATGA	0.478000													6	623					0	0	0.001168	0	0
GRIA4	2893	broad.mit.edu	37	11	105845117	105845117	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:105845117G>A	uc001pix.2	+	16	2936	c.2490G>A	c.(2488-2490)CTG>CTA	p.L830L	GRIA4_uc001piw.2_Silent_p.L830L|GRIA4_uc010rvm.1_RNA|GRIA4_uc009yxl.1_RNA	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	830	Helical; (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	TGGCAATGCTGGTGGCTTTGA	0.502000													6	364					0	0	0.001984	0	0
PHLDB1	23187	broad.mit.edu	37	11	118501985	118501985	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:118501985G>A	uc001ptr.1	+	8	2242	c.1889G>A	c.(1888-1890)GGA>GAA	p.G630E	PHLDB1_uc001pts.2_Missense_Mutation_p.G630E|PHLDB1_uc001ptt.2_Missense_Mutation_p.G630E|PHLDB1_uc001ptu.1_Intron|PHLDB1_uc001ptv.1_Missense_Mutation_p.G430E|PHLDB1_uc001ptw.1_Missense_Mutation_p.G32E|PHLDB1_uc009zai.1_5'Flank|PHLDB1_uc001ptx.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	630											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		GCTGATGGGGGACCTGAGGCT	0.667000													5	610					0	0	0.000602	0	0
BCL9L	283149	broad.mit.edu	37	11	118773105	118773105	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:118773105A>G	uc001pug.2	-	6	2312	c.1347T>C	c.(1345-1347)CCT>CCC	p.P449P	BCL9L_uc009zal.2_Silent_p.P444P	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	449	Pro-rich.|Necessary for interaction with CTNNB1 (By similarity).				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GCTGGGGGGGAGGGGGGGCTT	0.667000													5	139					0	0	0.007291	0	0
FOXRED1	55572	broad.mit.edu	37	11	126145300	126145300	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:126145300T>C	uc001qdi.2	+	6	757	c.710T>C	c.(709-711)CTT>CCT	p.L237P	FOXRED1_uc010sbn.1_Missense_Mutation_p.L67P|FOXRED1_uc010sbo.1_RNA|FOXRED1_uc010sbp.1_Missense_Mutation_p.L50P|FOXRED1_uc010sbq.1_Missense_Mutation_p.L104P|FOXRED1_uc001qdj.2_Missense_Mutation_p.L26P|FOXRED1_uc010sbr.1_Missense_Mutation_p.L223P|FOXRED1_uc001qdk.2_Missense_Mutation_p.L26P	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	237						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		TTGGGAGTCCTTTTCTGCCAG	0.527000													4	283					0	0	0.000248	0	0
DYRK4	8798	broad.mit.edu	37	12	4722739	4722739	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:4722739G>A	uc001qmx.2	+	13	1543	c.1383G>A	c.(1381-1383)CAG>CAA	p.Q461Q	DYRK4_uc001qmy.1_Silent_p.Q460Q|DYRK4_uc001qmz.1_Silent_p.Q174Q|DYRK4_uc001qna.1_Silent_p.Q97Q|DYRK4_uc010ser.1_Silent_p.Q98Q	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	461						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			AGCATGTTCAGCATTCAGGTG	0.498000													4	226					0	0	0.000602	0	0
KCNA1	3736	broad.mit.edu	37	12	5021748	5021748	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:5021748C>T	uc001qnh.2	+	2	2309	c.1204C>T	c.(1204-1206)CTG>TTG	p.L402L		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	402	Helical; Name=Segment S6; (Potential).				synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AACAATTGCCCTGCCCGTACC	0.517000													44	835					0	0	0.003214	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717461	13717461	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:13717461G>A	uc001rbt.2	-	13	2890	c.2711C>T	c.(2710-2712)ACG>ATG	p.T904M		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	904	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTTCTTGGCCGTGCGCAGCAG	0.582000													5	740					0	0	0.001168	0	0
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:25398284C>T	uc001rgp.1	-	2	216	c.35G>A	c.(34-36)GGT>GAT	p.G12D	KRAS_uc001rgq.1_Missense_Mutation_p.G12D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12N(6)|p.G12G(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GCCTACGCCACCAGCTCCAAC	0.348000	G12D(HPAC_PANCREAS)|G12V(SW403_LARGE_INTESTINE)|G12D(HPAFII_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(NCIH441_LUNG)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(PK1_PANCREAS)|G12V(KP3_PANCREAS)|G12D(PANC0813_PANCREAS)|G12A(SW1116_LARGE_INTESTINE)|G12D(LS180_LARGE_INTESTINE)|G12V(NCIH727_LUNG)|G12V(PATU8988S_PANCREAS)|G12V(CAPAN2_PANCREAS)|G12D(KP4_PANCREAS)|G12D(LS513_LARGE_INTESTINE)|G12D(SNUC2A_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(COLO668_LUNG)|G12D(COLO678_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12D(PANC0203_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(SW900_LUNG)|G12V(LCLC97TM1_LUNG)|G12V(SW620_LARGE_INTESTINE)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(SH10TC_STOMACH)|G12V(A498_KIDNEY)|G12D(PK59_PANCREAS)|G12D(HEC1A_ENDOMETRIUM)|G12D(PANC0504_PANCREAS)|G12V(SNGM_ENDOMETRIUM)|G12A(RERFLCAD1_LUNG)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12D(ASPC1_PANCREAS)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(RCM1_LARGE_INTESTINE)|G12V(CORL23_LUNG)|G12D(SW1990_PANCREAS)|G12D(HEYA8_OVARY)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12V(HUPT4_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(HEC50B_ENDOMETRIUM)|G12V(YAPC_PANCREAS)|G12V(NCIH2444_LUNG)|G12V(HCC56_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12V(DANG_PANCREAS)|G12V(SHP77_LUNG)|G12D(AGS_STOMACH)|G12D(SKLU1_LUNG)|G12V(QGP1_PANCREAS)|G12D(L33_PANCREAS)|G12V(PANC0327_PANCREAS)|G12D(PANC1_PANCREAS)|G12V(RKN_OVARY)|G12V(PATU8902_PANCREAS)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			8	84					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	12	31307356	31307356	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:31307356T>C	uc010sjy.1	-	7	724	c.724A>G	c.(724-726)AAA>GAA	p.K242E						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		ATTTGGGTTTTCCCTTGCACA	0.383000													3	68					0	0	0.000602	0	0
IKZF4	64375	broad.mit.edu	37	12	56428518	56428518	+	Silent	SNP	A	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:56428518A>C	uc001sjb.1	+	9	1320	c.1161A>C	c.(1159-1161)CCA>CCC	p.P387P	IKZF4_uc010sqa.1_Silent_p.P340P|IKZF4_uc001sjc.1_Silent_p.P387P|IKZF4_uc001sjd.1_Silent_p.P285P|IKZF4_uc009zoi.1_Silent_p.P342P|IKZF4_uc001sje.1_Silent_p.P346P	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	387					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			TCCGCCTTCCACCCACCAATT	0.582000													9	410					0	0	0.004007	0	0
TIMELESS	8914	broad.mit.edu	37	12	56825369	56825369	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:56825369C>T	uc001slf.2	-	8	875	c.707G>A	c.(706-708)GGA>GAA	p.G236E	TIMELESS_uc001slg.2_Missense_Mutation_p.G235E	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	236					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						CTGCCCTACTCCCGCCAGCTG	0.547000													9	215					0	0	0.000978	0	0
USP44	84101	broad.mit.edu	37	12	95927738	95927738	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:95927738G>A	uc001teg.2	-	2	439	c.295C>T	c.(295-297)CGA>TGA	p.R99*	USP44_uc001teh.2_Nonsense_Mutation_p.R99*|USP44_uc009zte.2_Nonsense_Mutation_p.R96*	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	99					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						AATGTACGTCGTAGTAACTTC	0.388000													4	166					0	0	0.000248	0	0
GLTP	51228	broad.mit.edu	37	12	110290404	110290404	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:110290404C>A	uc001tpm.2	-	5	700	c.586G>T	c.(586-588)GAG>TAG	p.E196*	GLTP_uc010sxt.1_RNA	NM_016433	NP_057517	Q9NZD2	GLTP_HUMAN	glycolipid transfer protein	196						cytoplasm	glycolipid binding|glycolipid transporter activity				0		Lung NSC(355;2.38e-06)|Breast(359;0.00354)|Myeloproliferative disorder(1001;0.0122)		BRCA - Breast invasive adenocarcinoma(302;0.0025)		GTGTACATCTCGTAGATGACA	0.547000											OREG0022112	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	886					3.09899e-07	4.16844e-07	0.004482	1	0
PITPNM2	57605	broad.mit.edu	37	12	123474413	123474413	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:123474413A>G	uc001uej.1	-	17	2791	c.2652T>C	c.(2650-2652)CCT>CCC	p.P884P	PITPNM2_uc001uek.1_Intron	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	884	DDHD.				metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		GGTGGGGGCCAGGGGTGGTGG	0.682000													14	99					0	0	0.005443	0	0
PITPNM2	57605	broad.mit.edu	37	12	123494483	123494483	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:123494483G>A	uc001uej.1	-	5	696	c.557C>T	c.(556-558)CCC>CTC	p.P186L	PITPNM2_uc001uek.1_Missense_Mutation_p.P186L|PITPNM2_uc009zxu.1_Missense_Mutation_p.P186L	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	186					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		GCACATGATGGGGAAGACCTG	0.562000													5	818					0	0	0.001984	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138387	126138387	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:126138387G>A	uc001uhe.1	+	9	2376	c.2368G>A	c.(2368-2370)GAA>AAA	p.E790K	TMEM132B_uc001uhf.1_Missense_Mutation_p.E302K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	790	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGTCAAATTCGAACCAAGTAG	0.423000													11	213					0	0	0.008291	0	0
LOC284232	284232	broad.mit.edu	37	13	19414170	19414170	+	RNA	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:19414170T>C	uc010tcj.1	-	1		c.31940A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GATTGAACAGTTGGTTCAAGT	0.269000													3	75					0	0	0.003954	0	0
BRCA2	675	broad.mit.edu	37	13	32945151	32945151	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:32945151A>G	uc001uub.1	+	20	8773	c.8546A>G	c.(8545-8547)AAG>AGG	p.K2849R		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2849					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		GAGGAAGAAAAGGAAGCAGCA	0.343000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			4	202					0	0	0.001168	0	0
MAB21L1	4081	broad.mit.edu	37	13	36049978	36049978	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:36049978G>A	uc001uvc.2	-	1	855	c.298C>T	c.(298-300)CTG>TTG	p.L100L	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	100					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		CTCAACTTCAGCACCGCGCAG	0.582000													4	382					0	0	0.000248	0	0
ZC3H13	23091	broad.mit.edu	37	13	46543773	46543773	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:46543773T>A	uc010tfw.1	-	13	2912	c.2906A>T	c.(2905-2907)AAA>ATA	p.K969I	ZC3H13_uc001vaq.2_5'Flank|ZC3H13_uc001vas.1_Missense_Mutation_p.K969I|ZC3H13_uc001vat.1_Missense_Mutation_p.K969I	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	969	Lys-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		CTCTTTCTTTTTCTTAATTGG	0.363000													9	283					0	0	0.004482	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111870079	111870079	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:111870079C>T	uc001vrs.2	+	6	835	c.585C>T	c.(583-585)TTC>TTT	p.F195F	ARHGEF7_uc001vrr.2_Silent_p.F174F|ARHGEF7_uc001vrt.2_Silent_p.F145F|ARHGEF7_uc010tjn.1_RNA|ARHGEF7_uc001vru.1_Silent_p.F17F|ARHGEF7_uc001vrv.3_Silent_p.F17F|ARHGEF7_uc001vrw.3_Silent_p.F17F|ARHGEF7_uc001vrx.3_Silent_p.F17F|ARHGEF7_uc010tjo.1_Silent_p.F92F	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	195	SH3.				apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			AGTTTAACTTCCAGCAGACCA	0.478000													7	375					0	0	0.006214	0	0
C13orf28	122258	broad.mit.edu	37	13	113088834	113088834	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:113088834G>A	uc001vsd.1	+	7	590	c.559G>A	c.(559-561)GCA>ACA	p.A187T		NM_145248	NP_660291	Q96KW9	SPAC7_HUMAN	hypothetical protein LOC122258 precursor	187						extracellular region					0	all_lung(23;0.000633)|Lung NSC(43;0.0161)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0997)|Medulloblastoma(90;0.163)					GAGGACCAGCGCACAGAGGAG	0.592000													3	93					0	0	0.000602	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113174322	113174322	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:113174322G>A	uc001vse.1	-	15	1946	c.1759C>T	c.(1759-1761)CGT>TGT	p.R587C	TUBGCP3_uc010tjq.1_Missense_Mutation_p.R577C|TUBGCP3_uc001vsf.2_Missense_Mutation_p.R587C	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	587					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					GTAGCTGGACGGACAAGTTCT	0.343000													4	428					0	0	0.000248	0	0
FLJ10357	55701	broad.mit.edu	37	14	21548848	21548848	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:21548848G>A	uc001vzp.2	+	12	2432	c.2403G>A	c.(2401-2403)GAG>GAA	p.E801E	FLJ10357_uc001vzo.1_5'UTR|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Silent_p.E87E	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	801					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		GCCCAGGGGAGGAGCAGCTGG	0.617000													4	207					0	0	0.000602	0	0
NIN	51199	broad.mit.edu	37	14	51237706	51237706	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:51237706G>A	uc001wym.2	-	11	1314	c.1123C>T	c.(1123-1125)CGA>TGA	p.R375*	NIN_uc001wyi.2_Nonsense_Mutation_p.R375*|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Nonsense_Mutation_p.R375*|NIN_uc010tqp.1_Nonsense_Mutation_p.R381*|NIN_uc001wyo.2_Nonsense_Mutation_p.R375*|NIN_uc001wyp.1_Nonsense_Mutation_p.R337*	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	375	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TGATCAACTCGTTCCCTAGGA	0.463000			T	PDGFRB	MPD								5	166					0	0	0.001984	0	0
SYNE2	23224	broad.mit.edu	37	14	64653214	64653214	+	Silent	SNP	C	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:64653214C>A	uc001xgm.2	+	97	17859	c.17629C>A	c.(17629-17631)CGG>AGG	p.R5877R	SYNE2_uc001xgl.2_Silent_p.R5877R|SYNE2_uc010apy.2_Silent_p.R2262R|SYNE2_uc001xgn.2_Silent_p.R839R|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_5'UTR|SYNE2_uc001xgq.2_Silent_p.R242R	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5877	Spectrin 4.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GGACTTAACCCGGCACGTTCT	0.458000													6	535					3.09899e-07	4.16844e-07	0.004482	1	0
RDH11	51109	broad.mit.edu	37	14	68156987	68156987	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:68156987G>A	uc001xjv.3	-	5	696	c.606C>T	c.(604-606)TAC>TAT	p.Y202Y	RDH11_uc001xjw.3_Silent_p.Y189Y|RDH11_uc001xjx.3_Intron	NM_016026	NP_057110	Q8TC12	RDH11_HUMAN	retinol dehydrogenase 11	202	Cytoplasmic (Potential).	Proton acceptor (By similarity).			retinol metabolic process|steroid metabolic process	endoplasmic reticulum membrane|integral to membrane	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.00047)|OV - Ovarian serous cystadenocarcinoma(108;0.00206)|BRCA - Breast invasive adenocarcinoma(234;0.00924)	Vitamin A(DB00162)	TGCTGTGACAGTAGGCCAGGC	0.512000													4	368					0	0	0.000248	0	0
ANGEL1	23357	broad.mit.edu	37	14	77255656	77255656	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:77255656G>A	uc001xsv.2	-	10	2041	c.1928C>T	c.(1927-1929)GCT>GTT	p.A643V	uc001xsu.1_5'Flank|ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	643										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		GCCATTGGCAGCCCAGAGTAT	0.577000													5	614					0	0	0.000602	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104220417	104220417	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:104220417G>A	uc001yof.1	-	6	904	c.621C>T	c.(619-621)AAC>AAT	p.N207N	PPP1R13B_uc001yog.1_Silent_p.N74N	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	207	Gln-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				ACAGATTGCCGTTCATGATTT	0.363000													5	751					0	0	0.001984	0	0
OCA2	4948	broad.mit.edu	37	15	28230273	28230273	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:28230273G>A	uc001zbh.3	-	13	1411	c.1301C>T	c.(1300-1302)GCC>GTC	p.A434V	OCA2_uc010ayv.2_Missense_Mutation_p.A410V	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	434	Helical; (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		AGAGAGGACGGCCGCGATGAG	0.597000									Oculocutaneous_Albinism				4	153					0	0	0.000248	0	0
HERC2	8924	broad.mit.edu	37	15	28413594	28413594	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:28413594C>T	uc001zbj.2	-	67	10478	c.10372G>A	c.(10372-10374)GAA>AAA	p.E3458K		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3458					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AGTCTGTCTTCGATATCAACA	0.502000													10	625					0	0	0.001368	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42436727	42436727	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:42436727G>A	uc001zoz.2	-	17	1959	c.1896C>T	c.(1894-1896)TCC>TCT	p.S632S	PLA2G4F_uc010bcq.2_5'UTR|PLA2G4F_uc001zoy.2_Silent_p.S264S|PLA2G4F_uc010bcr.2_Silent_p.S383S|PLA2G4F_uc001zpa.2_Silent_p.S383S|PLA2G4F_uc010bcs.2_Silent_p.S419S	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	632	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		AGCTCTGGGCGGAAGTGAAGC	0.622000													4	281					0	0	0.000248	0	0
CATSPER2	117155	broad.mit.edu	37	15	43931132	43931132	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:43931132C>T	uc001zsh.2	-	7	1027	c.812G>A	c.(811-813)CGT>CAT	p.R271H	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.R271H|CATSPER2_uc001zsj.2_Missense_Mutation_p.R271H	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	271	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CAGGTCCTGACGAGGTGAACG	0.498000													5	250					0	0	0.000602	0	0
GCNT3	9245	broad.mit.edu	37	15	59911063	59911063	+	Missense_Mutation	SNP	G	A	A	rs144448812		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:59911063G>A	uc002age.2	+	3	1075	c.626G>A	c.(625-627)TGC>TAC	p.C209Y	GCNT3_uc002agd.2_Missense_Mutation_p.C209Y	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	209	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						GACCTCAACTGCATGGAAGAC	0.488000													5	464					0	0	0.001984	0	0
SMAD6	4091	broad.mit.edu	37	15	67073407	67073407	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:67073407G>A	uc002aqf.2	+	4	1948	c.1025G>A	c.(1024-1026)CGC>CAC	p.R342H	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Missense_Mutation_p.R81H	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	342	MH2.				BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			skin(1)	1						CACCGGACGCGCGTGGGCCGC	0.682000													3	65					0	0	0.004672	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85055706	85055706	+	RNA	SNP	T	C	C	rs62637746		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:85055706T>C	uc002bkm.2	-	6		c.854A>G				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						CCTGTTCACATAGCCTCTCCT	0.552000													3	54					0	0	0.001168	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85055767	85055767	+	RNA	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:85055767C>T	uc002bkm.2	-	6		c.793G>A				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						CTCCTGTTCACACAGCCTCTC	0.557000													10	118					0	0	0.000978	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652000													13	152					0	0	0.006122	0	0
PIGQ	9091	broad.mit.edu	37	16	632974	632974	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:632974G>A	uc002cho.2	+	10	1725	c.1623G>A	c.(1621-1623)CCG>CCA	p.P541P	PIGQ_uc010bqw.2_Missense_Mutation_p.R562H|PIGQ_uc002chn.2_Missense_Mutation_p.R562H|PIGQ_uc010uui.1_3'UTR|PIGQ_uc002chp.2_Silent_p.P111P|uc010uuj.1_3'UTR	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	541					C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				GCCCTGTGCCGCAAGCTGTTC	0.652000													6	478					0	0	0.001984	0	0
MSLNL	401827	broad.mit.edu	37	16	830462	830462	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:830462G>A	uc002cjz.1	-	3	539	c.539C>T	c.(538-540)GCT>GTT	p.A180V		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	Error:Variant_position_missing_in_Q96KJ4_after_alignment					cell adhesion	integral to membrane				breast(3)|ovary(1)	4						CAGGTATACAGCACAGGCATG	0.572000													4	484					0	0	0.000248	0	0
QPRT	23475	broad.mit.edu	37	16	29706394	29706394	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:29706394G>A	uc002dto.2	+	2	501	c.423G>A	c.(421-423)ACG>ACA	p.T141T	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|QPRT_uc010vdu.1_Intron	NM_014298	NP_055113	Q15274	NADC_HUMAN	quinolinate phosphoribosyltransferase	141					protein oligomerization|quinolinate catabolic process|water-soluble vitamin metabolic process	cytosol	nicotinate-nucleotide diphosphorylase (carboxylating) activity|protein homodimerization activity				0					Niacin(DB00627)	GGAAGACCACGCCAGGCTTCC	0.697000													3	59					0	0	0.000602	0	0
HIRIP3	8479	broad.mit.edu	37	16	30006027	30006027	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:30006027G>A	uc002dve.2	-	4	900	c.439C>T	c.(439-441)CGG>TGG	p.R147W	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|INO80E_uc002dvg.1_5'Flank|INO80E_uc002dvh.1_5'Flank|INO80E_uc002dvi.1_5'Flank|INO80E_uc002dvj.1_5'Flank|INO80E_uc002dvk.1_5'Flank|HIRIP3_uc002dvf.2_Intron	NM_003609	NP_003600	Q9BW71	HIRP3_HUMAN	HIRA interacting protein 3	147	Glu-rich.				chromatin assembly or disassembly	nucleus	protein binding			central_nervous_system(1)	1						TCCCTCTGCCGTTCCTCATCA	0.567000													7	797					0	0	0.001984	0	0
EDC4	23644	broad.mit.edu	37	16	67913803	67913803	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:67913803C>T	uc002eur.2	+	16	2038	c.1872C>T	c.(1870-1872)AGC>AGT	p.S624S	EDC4_uc010cer.2_Silent_p.S243S|EDC4_uc010vkg.1_Silent_p.S556S|EDC4_uc002eus.2_Silent_p.S354S|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	624	Ser-rich.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		gcagcagcagcagtagcagca	0.443000													8	188					0	0	0.004482	0	0
EDC4	23644	broad.mit.edu	37	16	67916921	67916921	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:67916921G>A	uc002eur.2	+	27	3856	c.3690G>A	c.(3688-3690)GCG>GCA	p.A1230A	EDC4_uc010cer.2_Silent_p.A849A|EDC4_uc002eus.2_Silent_p.A960A|EDC4_uc002eut.1_3'UTR|NRN1L_uc002euu.2_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	1230					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		TGAGTGTGGCGCTCAAGGAGC	0.617000											OREG0023890	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	246					0	0	0.001168	0	0
SLC7A6	9057	broad.mit.edu	37	16	68324379	68324379	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:68324379C>T	uc002evt.1	+	6	1039	c.730C>T	c.(730-732)CTC>TTC	p.L244F	SLC7A6_uc010cfb.1_Intron|SLC7A6_uc002evu.1_Missense_Mutation_p.L244F|SLC7A6_uc002evv.1_Intron|SLC7A6_uc010cfc.1_Intron	NM_001076785	NP_001070253	Q92536	YLAT2_HUMAN	solute carrier family 7 (cationic amino acid	244	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|antiporter activity			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.034)|Epithelial(162;0.0948)		CTACTCTGCCCTCTTCTCTTA	0.507000													7	408					0	0	0.003080	0	0
JPH3	57338	broad.mit.edu	37	16	87678589	87678589	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:87678589G>A	uc002fkd.2	+	2	1362	c.1108G>A	c.(1108-1110)GCT>ACT	p.A370T	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	370	Ala-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CGTTGAGGCCGCTGAGCGGGC	0.667000													4	149					0	0	0.000248	0	0
PSMB6	5694	broad.mit.edu	37	17	4700038	4700038	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:4700038G>A	uc002fzb.2	+	2	151	c.118G>A	c.(118-120)GTG>ATG	p.V40M		NM_002798	NP_002789	P28072	PSB6_HUMAN	proteasome beta 6 subunit precursor	40					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2						TATCATGGCCGTGCAGTTTGA	0.488000													5	795					0	0	0.003080	0	0
SPEM1	374768	broad.mit.edu	37	17	7324832	7324832	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:7324832G>A	uc002ggv.2	+	3	863	c.838G>A	c.(838-840)GCC>ACC	p.A280T	FGF11_uc010vtw.1_Missense_Mutation_p.A14T	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	280	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				GGAGGTGGAGGCCCTGTCCGG	0.597000													4	160					0	0	0.000248	0	0
HS3ST3B1	9953	broad.mit.edu	37	17	14205111	14205111	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:14205111G>A	uc002goh.1	+	1	606	c.276G>A	c.(274-276)GCG>GCA	p.A92A	MGC12916_uc010vvv.1_5'Flank	NM_006041	NP_006032	Q9Y662	HS3SB_HUMAN	heparan sulfate D-glucosaminyl	92	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Golgi membrane|integral to plasma membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0887)		CGTTCCGGGCGCCGCCAGCCA	0.751000													3	31					0	0	0.004672	0	0
UBB	7314	broad.mit.edu	37	17	16285491	16285491	+	Silent	SNP	C	T	T	rs16962973		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:16285491C>T	uc002gpx.2	+	2	408	c.270C>T	c.(268-270)ACC>ACT	p.T90T	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	90	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		AGACCATCACCCTGGAAGTGG	0.552000													5	371					0	0	0.001168	0	0
UBB	7314	broad.mit.edu	37	17	16285638	16285638	+	Silent	SNP	G	A	A	rs144617200		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:16285638G>A	uc002gpx.2	+	2	555	c.417G>A	c.(415-417)AAG>AAA	p.K139K	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	139	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		ACATCCAGAAGGAGTCGACCC	0.567000													5	412					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	17	21731270	21731270	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:21731270T>C	uc002gyy.3	+	2	697	c.572T>C	c.(571-573)ATC>ACC	p.I191T						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		ATCCCCCCGATCAGCAGAGGC	0.547000													5	306					0	0	0.001168	0	0
NOS2	4843	broad.mit.edu	37	17	26110036	26110036	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:26110036G>A	uc002gzu.2	-	6	828	c.564C>T	c.(562-564)TTC>TTT	p.F188F	NOS2_uc010crh.1_Silent_p.F188F|NOS2_uc010wab.1_Silent_p.F188F	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	188					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	GCTTGGTGGCGAAGATGAGCT	0.552000													4	295					0	0	0.000602	0	0
ACCN1	40	broad.mit.edu	37	17	31439048	31439048	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:31439048G>A	uc002hhu.2	-	2	867	c.593C>T	c.(592-594)TCA>TTA	p.S198L	ACCN1_uc002hht.2_Missense_Mutation_p.S249L	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	198	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	ATCCTCGCCTGAGTTAAACAT	0.522000													4	216					0	0	0.000248	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39280087	39280087	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:39280087G>A	uc002hwa.2	-	1	333	c.288C>T	c.(286-288)TGC>TGT	p.C96C		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	96	17.|31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGGTGGGCTGGCAGCACACAG	0.512000													7	672					0	0	0.000978	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40653297	40653297	+	Missense_Mutation	SNP	G	A	A	rs144192654		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:40653297G>A	uc002hzr.2	+	17	2146	c.1979G>A	c.(1978-1980)CGT>CAT	p.R660H	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.R660H|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.R667H|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.R617H|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.R617H|ATP6V0A1_uc010cyg.2_Missense_Mutation_p.R306H|ATP6V0A1_uc010wgl.1_Missense_Mutation_p.R519H	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	660	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		GTCCTTCGCCGTCAGTATTTG	0.408000													5	243					0	0	0.001984	0	0
RECQL5	9400	broad.mit.edu	37	17	73624802	73624802	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:73624802G>A	uc010dgl.2	-	17	2686	c.2530C>T	c.(2530-2532)CCC>TCC	p.P844S	RECQL5_uc010dgk.2_Missense_Mutation_p.P817S|RECQL5_uc002jot.3_Missense_Mutation_p.P40S	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	844					DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			GCAGGGGTGGGCTGGACTTCA	0.652000								Other_identified_genes_with_known_or_suspected_DNA_repair_function					7	287					0	0	0.000978	0	0
QRICH2	84074	broad.mit.edu	37	17	74289004	74289004	+	Missense_Mutation	SNP	G	A	A	rs143499534	byFrequency	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:74289004G>A	uc002jrd.1	-	4	1486	c.1306C>T	c.(1306-1308)CGG>TGG	p.R436W	QRICH2_uc010wsz.1_Missense_Mutation_p.R362W|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	436	Gln-rich.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						attccaggccggaccaaacca	0.139000													5	228					0	0	0.001984	0	0
GAA	2548	broad.mit.edu	37	17	78083851	78083851	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:78083851G>A	uc002jxo.2	+	10	1616	c.1434G>A	c.(1432-1434)GGG>GGA	p.G478G	GAA_uc002jxp.2_Silent_p.G478G|GAA_uc002jxq.2_Silent_p.G478G	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	478			G -> R (in GSD2; severe; loss of activity).		cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	CGCTGATTGGGAAGGTAGGGC	0.667000													4	258					0	0	0.001168	0	0
NOL4	8715	broad.mit.edu	37	18	31538336	31538336	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr18:31538336C>G	uc010dmi.2	-	7	1332	c.1103G>C	c.(1102-1104)AGT>ACT	p.S368T	NOL4_uc010xbs.1_Missense_Mutation_p.S83T|NOL4_uc002kxr.3_Missense_Mutation_p.S204T|NOL4_uc010xbt.1_Missense_Mutation_p.S294T|NOL4_uc010dmh.2_Missense_Mutation_p.S294T|NOL4_uc010xbu.1_Missense_Mutation_p.S368T|NOL4_uc002kxt.3_Missense_Mutation_p.S368T|NOL4_uc010xbv.1_Missense_Mutation_p.S117T|NOL4_uc010xbw.1_Missense_Mutation_p.S254T	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	368						nucleolus	RNA binding			ovary(3)	3						TCGGTCTACACTCTCATTTTT	0.443000													10	569					0	0	0.002450	0	0
MCOLN1	57192	broad.mit.edu	37	19	7595171	7595171	+	Splice_Site	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:7595171G>A	uc002mgo.2	+	12	1485	c.1360_splice	c.e12-1	p.F454_splice	MCOLN1_uc002mgp.2_Splice_Site_p.F419_splice	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1						calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						CCCTCTGGCAGTTCCGCTCAC	0.652000													5	683					0	0	0.001168	0	0
CD209	30835	broad.mit.edu	37	19	7810698	7810698	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:7810698A>G	uc002mht.2	-	4	521	c.454T>C	c.(454-456)TGG>CGG	p.W152R	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.W128R|CD209_uc002mhr.2_Missense_Mutation_p.W128R|CD209_uc002mhs.2_Missense_Mutation_p.W128R|CD209_uc002mhu.2_Missense_Mutation_p.W152R|CD209_uc010dvq.2_Missense_Mutation_p.W152R|CD209_uc002mhq.2_Missense_Mutation_p.W152R|CD209_uc002mhv.2_Missense_Mutation_p.W128R|CD209_uc002mhx.2_Missense_Mutation_p.W108R|CD209_uc002mhw.2_Missense_Mutation_p.W108R|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	152	Extracellular (Probable).|7 X approximate tandem repeats.|3.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GCCTTCAGCCAGGTCAGCTCC	0.557000													5	755					0	0	0.003080	0	0
LRRC8E	80131	broad.mit.edu	37	19	7964686	7964686	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:7964686C>T	uc002mir.2	+	3	1380	c.1279C>T	c.(1279-1281)CCG>TCG	p.P427S		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	427						integral to membrane				lung(1)|pancreas(1)	2						CTGCATGCTGCCGGGTCTGCC	0.632000													4	180					0	0	0.000248	0	0
RGL3	57139	broad.mit.edu	37	19	11505125	11505125	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:11505125G>A	uc002mrp.2	-	19	2150	c.2086C>T	c.(2086-2088)CGG>TGG	p.R696W	RGL3_uc002mrn.2_Intron|RGL3_uc002mrm.2_Intron|RGL3_uc002mro.2_Missense_Mutation_p.R702W	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	696	Interaction with HRAS, MRAS and RIT1 (By similarity).|Ras-associating.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						TCTTTCCGCCGCAGCATGAAG	0.572000													5	227					0	0	0.000602	0	0
ZNF844	284391	broad.mit.edu	37	19	12187475	12187475	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:12187475C>G	uc002mtb.2	+	4	1683	c.1540C>G	c.(1540-1542)CAT>GAT	p.H514D	ZNF844_uc010dym.1_Missense_Mutation_p.H357D	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCACATCTGCCTCA	0.408000													6	190					0	0	0.003080	0	0
ZNF844	284391	broad.mit.edu	37	19	12187502	12187502	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:12187502A>G	uc002mtb.2	+	4	1710	c.1567A>G	c.(1567-1569)AAA>GAA	p.K523E	ZNF844_uc010dym.1_Missense_Mutation_p.K366E	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	523					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAAATGCATGAAAGGACTCAC	0.413000													3	142					0	0	0.001168	0	0
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:12501446T>C	uc010dyt.2	-	4	1916	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	589	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCTTACATTCATACGGGTT	0.413000													4	258					0	0	0.000248	0	0
ZNF429	353088	broad.mit.edu	37	19	21720496	21720496	+	Silent	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:21720496C>T	uc002nqd.1	+	4	1778	c.1641C>T	c.(1639-1641)AAC>AAT	p.N547N	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	547	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AAGCTTTTAACCGGTCCTCAA	0.373000													4	207					0	0	0.001168	0	0
ZNF208	7757	broad.mit.edu	37	19	22155896	22155896	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:22155896A>C	uc002nqp.2	-	5	1789	c.1640T>G	c.(1639-1641)ATT>AGT	p.I547S	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAGACCTTAATAAAGGTTTT	0.398000													4	346					0	0	0.001168	0	0
ZNF676	163223	broad.mit.edu	37	19	22363008	22363008	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:22363008C>G	uc002nqs.1	-	3	1829	c.1511G>C	c.(1510-1512)CGC>CCC	p.R504P		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	504					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				ACATTTGTAGCGTTTCTCTCC	0.388000													6	281					0	0	0.001855	0	0
ZNF91	7644	broad.mit.edu	37	19	23544783	23544783	+	Missense_Mutation	SNP	C	T	T	rs410211		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:23544783C>T	uc002nre.2	-	4	1111	c.998G>A	c.(997-999)CGT>CAT	p.R333H	ZNF91_uc010xrj.1_Missense_Mutation_p.R301H	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	333	C2H2-type 7.			R -> H (in Ref. 1; AAA59469).		nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAACGGCTAAAAGC	0.393000													5	389					0	0	0.004482	0	0
ZNF681	148213	broad.mit.edu	37	19	23927204	23927204	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:23927204G>C	uc002nrk.3	-	4	1290	c.1148C>G	c.(1147-1149)ACA>AGA	p.T383R	ZNF681_uc002nrl.3_Missense_Mutation_p.T314R|ZNF681_uc002nrj.3_Missense_Mutation_p.T314R	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	383	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TATCTTATGTGTAGTAAGGTG	0.403000													4	349					0	0	0.000602	0	0
ZNF681	148213	broad.mit.edu	37	19	23927206	23927206	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:23927206A>G	uc002nrk.3	-	4	1288	c.1146T>C	c.(1144-1146)ACT>ACC	p.T382T	ZNF681_uc002nrl.3_Silent_p.T313T|ZNF681_uc002nrj.3_Silent_p.T313T	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	382	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TCTTATGTGTAGTAAGGTGTG	0.408000													4	350					0	0	0.000248	0	0
SLC7A9	11136	broad.mit.edu	37	19	33355008	33355008	+	Missense_Mutation	SNP	C	T	T	rs140134166	byFrequency	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:33355008C>T	uc002ntv.3	-	4	589	c.472G>A	c.(472-474)GCC>ACC	p.A158T	SLC7A9_uc002ntt.3_RNA|SLC7A9_uc002ntu.3_Missense_Mutation_p.A158T|SLC7A9_uc002ntw.3_5'UTR	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	158	Helical; (Potential).		A -> AA (in CSNU).		blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	TCACAGATGGCGGCGGCGGCC	0.607000													4	212					0	0	0.000248	0	0
FFAR3	2865	broad.mit.edu	37	19	35850606	35850606	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:35850606G>A	uc002nzd.2	+	2	889	c.814G>A	c.(814-816)GAC>AAC	p.D272N	FFAR3_uc010xsu.1_Intron	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	272	Helical; Name=7; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			CTCCTGTGTCGACCCCTTTGT	0.592000													11	664					0	0	0.003163	0	0
ZFP36	7538	broad.mit.edu	37	19	39898592	39898592	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:39898592G>A	uc002olh.1	+	2	292	c.234G>A	c.(232-234)CCG>CCA	p.P78P	ZFP36_uc010egn.1_5'UTR	NM_003407	NP_003398	P26651	TTP_HUMAN	zinc finger protein 36, C3H type, homolog	78					positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	cytosol|nucleus	AU-rich element binding|DNA binding|mRNA binding|protein binding|single-stranded RNA binding|zinc ion binding			pancreas(1)	1	all_cancers(60;6.54e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.53e-06)|Ovarian(47;0.0512)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GCTTCGCACCGCTGGCTCCCC	0.706000													4	198					0	0	0.001168	0	0
FCGBP	8857	broad.mit.edu	37	19	40420031	40420031	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:40420031G>A	uc002omp.3	-	6	2971	c.2963C>T	c.(2962-2964)ACT>ATT	p.T988I		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	988	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CACCTTGGCAGTCACTCGTGC	0.617000													5	314					0	0	0.001168	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387826	46387826	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:46387826G>A	uc002pds.1	-	1	1551	c.1207C>T	c.(1207-1209)CGG>TGG	p.R403W		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	403					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		ACCCAGTGCCGTTGCTGCTGC	0.721000													4	149					0	0	0.000602	0	0
ZNF761	388561	broad.mit.edu	37	19	53958910	53958910	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:53958910A>G	uc010eqp.2	+	7	1607	c.1149A>G	c.(1147-1149)AAA>AAG	p.K383K	ZNF761_uc010ydy.1_Silent_p.K329K|ZNF761_uc002qbt.1_Silent_p.K329K	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	383	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		AACCCTACAAATGTAATGAGT	0.413000													5	727					0	0	0.006214	0	0
ZNF418	147686	broad.mit.edu	37	19	58438625	58438625	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:58438625A>G	uc002qqs.1	-	4	1216	c.924T>C	c.(922-924)CAT>CAC	p.H308H	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Silent_p.H223H	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	308	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		TTTCTCCAGTATGAACTCGCT	0.418000													6	562					0	0	0.006214	0	0
C2orf16	84226	broad.mit.edu	37	2	27804634	27804634	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:27804634G>A	uc002rkz.3	+	1	5246	c.5195G>A	c.(5194-5196)AGA>AAA	p.R1732K	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1732	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|13.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CCCTCAGAGAGAAGCCATCAC	0.562000													7	839					0	0	0.000602	0	0
BIRC6	57448	broad.mit.edu	37	2	32832589	32832589	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:32832589G>T	uc010ezu.2	+	72	14272	c.14138G>T	c.(14137-14139)CGG>CTG	p.R4713L		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4713					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GGATATGAACGGTCTAGAGGC	0.423000													5	444					0.00198382	0.00257746	0.001984	1	0
OTX1	5013	broad.mit.edu	37	2	63280186	63280186	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:63280186G>A	uc002scd.2	+	3	309	c.61G>A	c.(61-63)GCC>ACC	p.A21T	OTX1_uc010ypt.1_5'UTR	NM_014562	NP_055377	P32242	OTX1_HUMAN	orthodenticle homeobox 1	21						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(2)	2	Lung NSC(7;0.121)|all_lung(7;0.211)					GGCCGGGCCCGCCATGGACCT	0.657000													6	490					0	0	0.004482	0	0
MOGS	7841	broad.mit.edu	37	2	74689161	74689161	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:74689161G>A	uc010ffj.2	-	4	1918	c.1755C>T	c.(1753-1755)TAC>TAT	p.Y585Y	MOGS_uc010ffh.2_Silent_p.Y310Y|MOGS_uc010yrt.1_Silent_p.Y466Y|MOGS_uc010ffi.2_Silent_p.Y479Y	NM_006302	NP_006293	Q13724	MOGS_HUMAN	mannosyl-oligosaccharide glucosidase isoform 1	585	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|membrane fraction	mannosyl-oligosaccharide glucosidase activity				0						AAGCCCGGGGGTAGTCATCCA	0.642000													5	469					0	0	0.001168	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522763	95522763	+	RNA	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:95522763C>T	uc010fhp.2	-	1		c.58G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						CGCCAGGCAGCGCTCCACCTC	0.682000													4	219					0	0	0.000248	0	0
NCAPH	23397	broad.mit.edu	37	2	97007619	97007619	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:97007619T>C	uc002svz.1	+	2	343	c.259T>C	c.(259-261)TCC>CCC	p.S87P	NCAPH_uc010fhu.1_Missense_Mutation_p.S63P|NCAPH_uc010fhv.1_Missense_Mutation_p.S76P|NCAPH_uc010yum.1_Missense_Mutation_p.S63P|NCAPH_uc010fhw.1_Missense_Mutation_p.S76P|NCAPH_uc010yun.1_Intron|NCAPH_uc002swa.1_Intron	NM_015341	NP_056156	Q15003	CND2_HUMAN	non-SMC condensin I complex, subunit H	87					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|microtubule cytoskeleton|nucleus				urinary_tract(1)|skin(1)	2		Ovarian(717;0.0221)				CTTATTGGCCTCCCCCTCCAG	0.577000													5	401					0	0	0.001168	0	0
LOC401010	401010	broad.mit.edu	37	2	132200904	132200904	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:132200904G>A	uc002tst.2	-	1	1564	c.1098C>T	c.(1096-1098)GAC>GAT	p.D366D		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CCACCAGGCCGTCCTGGTACG	0.632000													4	174					0	0	0.001168	0	0
R3HDM1	23518	broad.mit.edu	37	2	136409479	136409479	+	Silent	SNP	A	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:136409479A>T	uc002tuo.2	+	17	2170	c.1800A>T	c.(1798-1800)CCA>CCT	p.P600P	R3HDM1_uc010fni.2_Silent_p.P599P|R3HDM1_uc002tup.2_Silent_p.P545P|R3HDM1_uc010zbh.1_Silent_p.P348P	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	600	Poly-Pro.						nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		caccaccaccacctcctcctc	0.398000													7	278					0	0	0.006214	0	0
BAZ2B	29994	broad.mit.edu	37	2	160287451	160287451	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:160287451G>A	uc002uao.2	-	10	2469	c.2117C>T	c.(2116-2118)GCT>GTT	p.A706V	BAZ2B_uc002uap.2_Missense_Mutation_p.A704V|BAZ2B_uc002uaq.1_Intron|BAZ2B_uc002uar.1_Missense_Mutation_p.A279V	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	706					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						ACATAAGGCAGCAGGAGCAGA	0.448000													4	344					0	0	0.000248	0	0
BAZ2B	29994	broad.mit.edu	37	2	160289578	160289578	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:160289578A>G	uc002uao.2	-	9	1942	c.1590T>C	c.(1588-1590)CCT>CCC	p.P530P	BAZ2B_uc002uap.2_Silent_p.P528P|BAZ2B_uc002uas.1_Silent_p.P467P|BAZ2B_uc002uaq.1_Silent_p.P458P|BAZ2B_uc002uar.1_Silent_p.P103P	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	530					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GTGAGGAAAAAGGGGTGCTAC	0.443000													5	574					0	0	0.000602	0	0
STK39	27347	broad.mit.edu	37	2	169020276	169020276	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:169020276T>C	uc002uea.2	-	4	705	c.545A>G	c.(544-546)TAT>TGT	p.Y182C		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	182	Protein kinase.				response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						TCTGTGTAGATAGTCTAAGCC	0.378000													3	216					0	0	0.000248	0	0
WIPF1	7456	broad.mit.edu	37	2	175436605	175436605	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:175436605G>A	uc002uiy.2	-	6	1260	c.928C>T	c.(928-930)CCG>TCG	p.P310S	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Missense_Mutation_p.P310S|WIPF1_uc010fqt.1_Missense_Mutation_p.P310S|WIPF1_uc002ujc.1_Missense_Mutation_p.P310S|WIPF1_uc002uiz.2_Missense_Mutation_p.P310S|WIPF1_uc002ujb.1_Missense_Mutation_p.P310S|WIPF1_uc010zep.1_Missense_Mutation_p.P310S	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	310	Pro-rich.				actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						GGAGGTGGCGGCGGAGGTGGG	0.657000													4	114					0	0	0.000248	0	0
COL5A2	1290	broad.mit.edu	37	2	189927907	189927907	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:189927907T>A	uc002uqk.2	-	27	2135	c.1860A>T	c.(1858-1860)AAA>AAT	p.K620N	COL5A2_uc010frx.2_Missense_Mutation_p.K196N	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	620					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CACTGCTACCTTTGGGGCCTG	0.502000													21	602					0	0	0.002299	0	0
RAPH1	65059	broad.mit.edu	37	2	204305407	204305407	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:204305407G>A	uc002vad.2	-	14	2731	c.2506C>T	c.(2506-2508)CCC>TCC	p.P836S		NM_213589	NP_998754	Q70E73	RAPH1_HUMAN	Ras association and pleckstrin homology domains	836					cell-matrix adhesion|signal transduction	cytoplasm|cytoskeleton|filopodium|lamellipodium|nucleus|plasma membrane				ovary(3)|breast(3)|central_nervous_system(2)|lung(1)|skin(1)	10						GTTGGCGGGGGTACTGGAACA	0.582000													9	382					0	0	0.004482	0	0
PARD3B	117583	broad.mit.edu	37	2	205990391	205990391	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:205990391G>A	uc002var.1	+	10	1571	c.1364G>A	c.(1363-1365)AGC>AAC	p.S455N	PARD3B_uc010fub.1_Missense_Mutation_p.S455N|PARD3B_uc002vao.1_Missense_Mutation_p.S455N|PARD3B_uc002vap.1_Missense_Mutation_p.S455N|PARD3B_uc002vaq.1_Missense_Mutation_p.S455N	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	455	PDZ 2.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		ATGCTCAGGAGCACCAAGCAG	0.488000													7	568					0	0	0.001984	0	0
ADAM23	8745	broad.mit.edu	37	2	207459491	207459491	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:207459491G>A	uc002vbq.2	+	23	2332	c.2109G>A	c.(2107-2109)ACG>ACA	p.T703T	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	703	Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		ATGATGATACGGATGTGGGCT	0.423000													4	250					0	0	0.000602	0	0
ANKZF1	55139	broad.mit.edu	37	2	220098040	220098040	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:220098040G>A	uc002vkg.2	+	7	878	c.704G>A	c.(703-705)CGC>CAC	p.R235H	ANKZF1_uc010zkv.1_Missense_Mutation_p.R179H|ANKZF1_uc010zkw.1_Missense_Mutation_p.R25H|ANKZF1_uc002vkh.2_Missense_Mutation_p.R25H|ANKZF1_uc002vki.2_Missense_Mutation_p.R235H|ANKZF1_uc002vkj.1_Missense_Mutation_p.R223H	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	235						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACTTTTCACCGCTATACGGTT	0.577000													4	551					0	0	0.001984	0	0
TMEM198	130612	broad.mit.edu	37	2	220412311	220412311	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:220412311C>T	uc002vme.2	+	4	835	c.250C>T	c.(250-252)CGG>TGG	p.R84W	TMEM198_uc002vmf.2_Missense_Mutation_p.R84W	NM_001005209	NP_001005209	Q66K66	TM198_HUMAN	transmembrane protein 198	84	Leu-rich.					integral to membrane				ovary(1)	1		Renal(207;0.0376)		Epithelial(149;6.49e-08)|all cancers(144;6.45e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		CTACCGAGAGCGGGTGCTAGA	0.642000													5	830					0	0	0.004672	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447360	226447360	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:226447360G>A	uc002voe.2	+	4	1402	c.1227G>A	c.(1225-1227)GCG>GCA	p.A409A	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.A179A	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	409	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		CCACCCCTGCGCTCTCCTCGT	0.692000													3	54					0	0	0.000602	0	0
AGAP1	116987	broad.mit.edu	37	2	236957825	236957825	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:236957825G>A	uc002vvs.2	+	16	2609	c.2014G>A	c.(2014-2016)GAG>AAG	p.E672K	AGAP1_uc002vvt.2_Missense_Mutation_p.E619K	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	672	Arf-GAP.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						CTGGCCAGTCGAGCTCATCAA	0.582000													5	403					0	0	0.001168	0	0
KIF1A	547	broad.mit.edu	37	2	241724432	241724432	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:241724432C>T	uc002vzy.2	-	7	840	c.694G>A	c.(694-696)GCA>ACA	p.A232T	KIF1A_uc010fzk.2_Missense_Mutation_p.A232T|KIF1A_uc002vzz.1_Missense_Mutation_p.A232T	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	232	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		TTGGTCTCTGCGTCATGGCGC	0.607000													6	788					0	0	0.001168	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3670268	3670268	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:3670268A>G	uc002wja.2	-	19	4976	c.4976T>C	c.(4975-4977)CTG>CCG	p.L1659P	SIGLEC1_uc002wjb.1_3'UTR|SIGLEC1_uc002wiz.3_Missense_Mutation_p.L1659P	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1659	Helical; (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GCAGGCCCCCAGGCCCAACAG	0.652000													3	43					0	0	0.000602	0	0
NKX2-2	4821	broad.mit.edu	37	20	21492615	21492615	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:21492615G>A	uc002wsi.2	-	2	1125	c.768C>T	c.(766-768)ACC>ACT	p.T256T		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	256					brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						GGTACTGGGGGGTGCTGGCCG	0.692000													4	304					0	0	0.001168	0	0
CTSA	5476	broad.mit.edu	37	20	44521925	44521925	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:44521925T>C	uc002xqj.3	+	7	1141	c.667T>C	c.(667-669)TAC>CAC	p.Y223H	NEURL2_uc002xqg.1_5'Flank|CTSA_uc002xqh.2_Missense_Mutation_p.Y241H|CTSA_uc002xqi.2_RNA|CTSA_uc010zxi.1_Missense_Mutation_p.Y224H|CTSA_uc002xqk.3_Missense_Mutation_p.Y223H	NM_001127695	NP_001121167	P10619	PPGB_HUMAN	cathepsin A isoform b precursor	223					intracellular protein transport|proteolysis	endoplasmic reticulum|lysosome|nucleus	enzyme activator activity|protein binding|serine-type carboxypeptidase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CTACTTTGCCTACTACCATGG	0.557000													3	310					0	0	0.004672	0	0
GNAS	2778	broad.mit.edu	37	20	57485073	57485073	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:57485073G>T	uc002xzw.2	+	11	3121	c.2836G>T	c.(2836-2838)GCT>TCT	p.A946S	GNAS_uc002xzt.2_3'UTR|GNAS_uc010gjq.2_Missense_Mutation_p.A244S|GNAS_uc002xzx.2_Missense_Mutation_p.A244S|GNAS_uc010gjr.2_Missense_Mutation_p.A194S|GNAS_uc002xzy.2_Missense_Mutation_p.A229S|GNAS_uc002yaa.2_Missense_Mutation_p.A289S|GNAS_uc010zzt.1_Missense_Mutation_p.A304S|GNAS_uc002yab.2_Intron|GNAS_uc002yad.2_Missense_Mutation_p.A194S|GNAS_uc002yae.2_Missense_Mutation_p.A228S	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	303					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GAAAGTCCTTGCTGGGAAATC	0.502000			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			6	550					0.000157383	0.000206829	0.003080	1	0
LSM14B	149986	broad.mit.edu	37	20	60708368	60708368	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:60708368G>A	uc010gjy.1	+	8	1215	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	LSM14B_uc002ybv.2_Missense_Mutation_p.E311K|LSM14B_uc010zzz.1_Missense_Mutation_p.E257K	NM_144703	NP_653304	Q9BX40	LS14B_HUMAN	LSM14 homolog B	337	TFG box.				multicellular organismal development|regulation of translation	ribonucleoprotein complex					0	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.28e-07)			GACGTGGGCCGAAGAGAGGAA	0.617000													5	388					0	0	0.000602	0	0
KRTAP19-1	337882	broad.mit.edu	37	21	31852409	31852409	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr21:31852409G>A	uc011acx.1	-	1	228	c.228C>T	c.(226-228)TGC>TGT	p.C76C		NM_181607	NP_853638	Q8IUB9	KR191_HUMAN	keratin associated protein 19-1	76	26 X 2 AA repeats of G-[YCGS].					intermediate filament					0						ACGATGGGCGGCAGCAGCCAT	0.488000													7	820					0	0	0.004482	0	0
DNAJC28	54943	broad.mit.edu	37	21	34861007	34861007	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr21:34861007C>G	uc002yrv.2	-	2	1143	c.694G>C	c.(694-696)GAC>CAC	p.D232H	DNAJC28_uc002yrw.2_Missense_Mutation_p.D232H	NM_017833	NP_060303	Q9NX36	DJC28_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 28	232							heat shock protein binding				0						TAAGAACAGTCAGAAAACTTT	0.403000													4	528					0	0	0.000602	0	0
CBS	875	broad.mit.edu	37	21	44479374	44479374	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr21:44479374G>A	uc002zcu.2	-	13	1430	c.1185C>T	c.(1183-1185)GGC>GGT	p.G395G	CBS_uc002zcs.1_Silent_p.G290G|CBS_uc002zct.2_Silent_p.G395G|CBS_uc002zcw.3_Silent_p.G395G|CBS_uc002zcv.2_Silent_p.G395G|CBS_uc002zcx.2_Silent_p.G14G	NM_000071	NP_000062	P35520	CBS_HUMAN	cystathionine-beta-synthase	395					cysteine biosynthetic process from serine|cysteine biosynthetic process via cystathionine|homocysteine catabolic process|hydrogen sulfide biosynthetic process|L-cysteine catabolic process|L-serine catabolic process	cytosol|nucleolus	cystathionine beta-synthase activity|heme binding|protein homodimerization activity|pyridoxal phosphate binding|ubiquitin protein ligase binding				0					L-Cysteine(DB00151)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|S-Adenosylmethionine(DB00118)	CCTTCAGAAAGCCCTTCTGCA	0.677000													10	380					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	22	18846006	18846006	+	RNA	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr22:18846006A>G	uc002zoe.2	+	5		c.2368A>G			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GCGCAGGCCGACACTCACTGA	0.617000													5	277					0	0	0.003080	0	0
LIF	3976	broad.mit.edu	37	22	30640833	30640833	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr22:30640833G>A	uc003agz.2	-	2	221	c.109C>T	c.(109-111)CGC>TGC	p.R37C	LIF_uc011aks.1_Intron|uc003aha.2_5'Flank	NM_002309	NP_002300	P15018	LIF_HUMAN	leukemia inhibitory factor (cholinergic	37					immune response|leukemia inhibitory factor signaling pathway|negative regulation of hormone secretion|positive regulation of cell proliferation|positive regulation of macrophage differentiation|positive regulation of MAPKKK cascade|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of metanephric nephron tubule epithelial cell differentiation		cytokine activity|growth factor activity|leukemia inhibitory factor receptor binding				0			Epithelial(10;0.171)			CATGGGTGGCGTATGGCACAG	0.567000													4	202					0	0	0.000248	0	0
SYN3	8224	broad.mit.edu	37	22	33402569	33402569	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr22:33402569G>A	uc003amx.2	-	1	238	c.79C>T	c.(79-81)CGC>TGC	p.R27C	SYN3_uc003amy.2_Missense_Mutation_p.R27C|SYN3_uc003amz.2_Missense_Mutation_p.R27C	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	27	A.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						CTATCTGGGCGTTGCAGGTCC	0.592000													5	542					0	0	0.001984	0	0
SCN5A	6331	broad.mit.edu	37	3	38603953	38603953	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:38603953G>A	uc003cio.2	-	22	4110	c.3916C>T	c.(3916-3918)CGT>TGT	p.R1306C	SCN5A_uc003cin.2_Missense_Mutation_p.R1305C|SCN5A_uc003cil.3_Missense_Mutation_p.R1306C|SCN5A_uc010hhi.2_Missense_Mutation_p.R1306C|SCN5A_uc010hhk.2_Missense_Mutation_p.R1305C|SCN5A_uc011ayr.1_Missense_Mutation_p.R1252C|SCN5A_uc010hhj.1_Missense_Mutation_p.R916C	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1306	Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGGAGTGCACGCAGCGTCCGC	0.627000													3	80					0	0	0.004672	0	0
NBEAL2	23218	broad.mit.edu	37	3	47041655	47041655	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:47041655T>C	uc003cqp.2	+	27	4245	c.4066T>C	c.(4066-4068)TTT>CTT	p.F1356L	NBEAL2_uc010hjm.1_Intron|NBEAL2_uc010hjn.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1356							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		CTGCACGCCCTTTGACCTGGG	0.612000													4	739					0	0	0.001168	0	0
GMPPB	29925	broad.mit.edu	37	3	49759238	49759238	+	Silent	SNP	G	A	A	rs139041816		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:49759238G>A	uc003cxk.1	-	9	1255	c.1030C>T	c.(1030-1032)CTG>TTG	p.L344L	AMIGO3_uc003cxj.2_5'Flank|GMPPB_uc003cxl.1_Silent_p.L371L	NM_021971	NP_068806	Q9Y5P6	GMPPB_HUMAN	GDP-mannose pyrophosphorylase B isoform 2	344					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		TTGTGGGGCAGCACGCTGGCT	0.577000													4	218					0	0	0.000248	0	0
C3orf54	389119	broad.mit.edu	37	3	49841903	49841903	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:49841903G>A	uc003cxq.1	+	2	480	c.347G>A	c.(346-348)CGC>CAC	p.R116H		NM_203370	NP_976248	Q96EL1	CC054_HUMAN	hypothetical protein LOC389119	114											0				BRCA - Breast invasive adenocarcinoma(193;3.55e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GTATCCCAGCGCCCAGCACCC	0.652000													5	570					0	0	0.004482	0	0
FAM3D	131177	broad.mit.edu	37	3	58620028	58620028	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:58620028C>T	uc003dkq.2	-	10	950	c.653G>A	c.(652-654)TGC>TAC	p.C218Y		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	218					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		CGGGGGCATGCAGCCCTCCAT	0.557000													6	413					0	0	0.003080	0	0
MAGI1	9223	broad.mit.edu	37	3	66023838	66023838	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:66023838G>A	uc003dmn.2	-	1	672	c.146C>T	c.(145-147)GCG>GTG	p.A49V	MAGI1_uc003dmm.2_Missense_Mutation_p.A49V|MAGI1_uc003dmo.2_Missense_Mutation_p.A49V|MAGI1_uc003dmp.2_Missense_Mutation_p.A49V|MAGI1_uc003dmr.2_Missense_Mutation_p.A49V	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	49	PDZ 1.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TGCCTCGACCGCCGCCACCGC	0.746000													6	334					0	0	0.001984	0	0
ROBO1	6091	broad.mit.edu	37	3	79638999	79638999	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:79638999G>A	uc003dqe.2	-	2	271	c.63C>T	c.(61-63)CAC>CAT	p.H21H		NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	21					activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CCAGAAACAGGTGATTTGGGG	0.398000													8	494					0	0	0.008291	0	0
LNP1	348801	broad.mit.edu	37	3	100174758	100174758	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:100174758A>G	uc003dtx.3	+	4	1805	c.525A>G	c.(523-525)AAA>AAG	p.K175K	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	175											0						TGTTTGAAAAAGGGCCTGAAT	0.453000													5	337					0	0	0.003080	0	0
HPS3	84343	broad.mit.edu	37	3	148872971	148872971	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:148872971C>T	uc003ewu.1	+	8	1618	c.1478C>T	c.(1477-1479)ACG>ATG	p.T493M	HPS3_uc011bnq.1_Missense_Mutation_p.T328M	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	493						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			ATTGTGAATACGATCTCACCA	0.348000									Hermansky-Pudlak_syndrome				4	257					0	0	0.000602	0	0
TIPARP	25976	broad.mit.edu	37	3	156396179	156396179	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:156396179G>A	uc003fav.2	+	2	941	c.693G>A	c.(691-693)CAG>CAA	p.Q231Q	LOC100287227_uc011boq.1_5'Flank|TIPARP_uc003faw.2_Silent_p.Q231Q	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	231							NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			ACCAGTTGCAGTACCACACTC	0.463000													5	367					0	0	0.000602	0	0
USP13	8975	broad.mit.edu	37	3	179458115	179458115	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:179458115G>A	uc003fkh.2	+	11	1416	c.1335G>A	c.(1333-1335)CAG>CAA	p.Q445Q	USP13_uc003fkf.2_Silent_p.Q445Q	NM_003940	NP_003931	Q92995	UBP13_HUMAN	ubiquitin thiolesterase 13	445					ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(1)	1	all_cancers(143;7.79e-15)|Ovarian(172;0.0338)|Breast(254;0.148)		OV - Ovarian serous cystadenocarcinoma(80;1e-25)|GBM - Glioblastoma multiforme(14;0.0169)			CTAACAGGCAGCAAGATGCCC	0.498000													5	338					0	0	0.000602	0	0
FXR1	8087	broad.mit.edu	37	3	180685953	180685953	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:180685953G>A	uc003fkq.2	+	14	1335	c.1313G>A	c.(1312-1314)AGC>AAC	p.S438N	FXR1_uc003fkp.2_Missense_Mutation_p.S353N|FXR1_uc003fkr.2_Missense_Mutation_p.S438N|FXR1_uc011bqj.1_Missense_Mutation_p.S352N|FXR1_uc003fks.2_Missense_Mutation_p.S381N|FXR1_uc011bqk.1_Missense_Mutation_p.S389N|FXR1_uc011bql.1_Missense_Mutation_p.S425N	NM_005087	NP_005078	P51114	FXR1_HUMAN	fragile X mental retardation-related protein 1	438					apoptosis|cell differentiation|muscle organ development	nucleolus|polysome				breast(1)	1	all_cancers(143;6.07e-14)|Ovarian(172;0.0212)		Epithelial(37;3.05e-35)|OV - Ovarian serous cystadenocarcinoma(80;2.4e-22)			CAGCGTGACAGCAGGAGACGC	0.542000													5	396					0	0	0.001168	0	0
ABCF3	55324	broad.mit.edu	37	3	183911221	183911221	+	Missense_Mutation	SNP	G	A	A	rs150420700		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:183911221G>A	uc003fmz.2	+	20	2085	c.1952G>A	c.(1951-1953)CGT>CAT	p.R651H	ABCF3_uc003fna.2_Missense_Mutation_p.R645H|ABCF3_uc003fnb.2_Missense_Mutation_p.R332H	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	651	ABC transporter 2.						ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCTCTGGGCCGTGCCCTCAAC	0.592000													6	540					0	0	0.001168	0	0
SDHAP2	727956	broad.mit.edu	37	3	195410687	195410687	+	Missense_Mutation	SNP	T	A	A	rs6583274	by1000genomes	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:195410687T>A	uc003fuw.2	+	13	1778	c.584T>A	c.(583-585)GTG>GAG	p.V195E	SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CCCTTTGAGGTGCACTGGAGG	0.567000													13	63					0	0	0.004990	0	0
SDHAP2	727956	broad.mit.edu	37	3	195410689	195410689	+	Missense_Mutation	SNP	C	T	T	rs6583275	by1000genomes	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:195410689C>T	uc003fuw.2	+	13	1780	c.586C>T	c.(586-588)CAC>TAC	p.H196Y	SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CTTTGAGGTGCACTGGAGGAA	0.567000													13	68					0	0	0.004007	0	0
LIMCH1	22998	broad.mit.edu	37	4	41621276	41621276	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:41621276G>A	uc003gvu.3	+	8	808	c.754G>A	c.(754-756)GCA>ACA	p.A252T	LIMCH1_uc003gvt.1_Missense_Mutation_p.A93T|LIMCH1_uc003gvv.3_Missense_Mutation_p.A252T|LIMCH1_uc003gvw.3_Missense_Mutation_p.A252T|LIMCH1_uc003gvx.3_Missense_Mutation_p.A252T|LIMCH1_uc003gwe.3_Missense_Mutation_p.A252T|LIMCH1_uc003gvy.3_Missense_Mutation_p.A93T|LIMCH1_uc003gwa.3_Missense_Mutation_p.A93T|LIMCH1_uc003gvz.3_Missense_Mutation_p.A93T|LIMCH1_uc011byu.1_Missense_Mutation_p.A98T|LIMCH1_uc003gwc.3_Missense_Mutation_p.A98T|LIMCH1_uc003gwd.3_Missense_Mutation_p.A98T|LIMCH1_uc011byv.1_Missense_Mutation_p.A3T|LIMCH1_uc003gwb.1_Missense_Mutation_p.A100T	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	252					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TGACATGTCTGCACGGCGGAC	0.547000													6	699					0	0	0.001168	0	0
MUC7	4589	broad.mit.edu	37	4	71346978	71346978	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:71346978T>C	uc011cat.1	+	4	805	c.517T>C	c.(517-519)TCT>CCT	p.S173P	MUC7_uc011cau.1_Missense_Mutation_p.S173P|MUC7_uc003hfj.2_Missense_Mutation_p.S173P|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	173	1.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCCACACCTTCTGCAACTAC	0.522000													6	644					0	0	0.000978	0	0
USO1	8615	broad.mit.edu	37	4	76695869	76695869	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:76695869C>A	uc003hiu.2	+	7	771	c.596C>A	c.(595-597)GCA>GAA	p.A199E	USO1_uc003hiv.2_Missense_Mutation_p.A34E|USO1_uc003hiw.2_Missense_Mutation_p.A34E	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	199	ARM 4.|Globular head.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AGCAATGGTGCAATCCAGAAA	0.358000													5	205					8.12818e-05	0.000107644	0.001984	1	0
BMP3	651	broad.mit.edu	37	4	81967654	81967654	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:81967654G>A	uc003hmg.3	+	2	1399	c.1079G>A	c.(1078-1080)AGG>AAG	p.R360K		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	360					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						AAAAAGGCAAGGAGAAAGCAG	0.483000													5	300					0	0	0.000602	0	0
UNC5C	8633	broad.mit.edu	37	4	96127876	96127876	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:96127876G>A	uc003htp.1	-	11	1959	c.1805C>T	c.(1804-1806)ACC>ATC	p.T602I	UNC5C_uc010ilc.1_Missense_Mutation_p.T621I	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	602	Cytoplasmic (Potential).|ZU5.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		GACTGGGCGGGTGAGCAGAGC	0.582000													4	261					0	0	0.000602	0	0
PRSS12	8492	broad.mit.edu	37	4	119273846	119273846	+	Silent	SNP	C	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:119273846C>G	uc003ica.1	-	1	77	c.30G>C	c.(28-30)CTG>CTC	p.L10L		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	10						membrane	scavenger receptor activity			skin(1)	1						CCCCTAACATCAGGGCTAGCA	0.657000													3	127					0	0	0.004672	0	0
BBS7	55212	broad.mit.edu	37	4	122791451	122791451	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:122791451G>A	uc003ied.2	-	1	192	c.18C>T	c.(16-18)AAC>AAT	p.N6N	BBS7_uc003iee.1_Silent_p.N6N	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	6					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						AATCCATTCGGTTTAAAATCA	0.602000									Bardet-Biedl_syndrome				4	245					0	0	0.000248	0	0
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:146059041A>G	uc003ika.3	-	21	2829	c.2691T>C	c.(2689-2691)CAT>CAC	p.H897H	OTUD4_uc003ijz.3_Silent_p.H896H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	961							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GAGTGGGAGGATGAGCCTTTC	0.478000													10	555					0	0	0.000978	0	0
ENC1	8507	broad.mit.edu	37	5	73930888	73930888	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:73930888G>A	uc003kdc.3	-	2	2554	c.1423C>T	c.(1423-1425)CCG>TCG	p.P475S	ENC1_uc011css.1_Missense_Mutation_p.P402S	NM_003633	NP_003624	O14682	ENC1_HUMAN	ectodermal-neural cortex (with BTB-like domain)	475	Kelch 4.				nervous system development	cytoplasm|cytoskeleton|nuclear matrix	actin binding			ovary(1)|pancreas(1)|skin(1)	3		all_lung(232;0.0154)|Lung NSC(167;0.0331)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.45e-59)		CAGGTGGCCGGTACAGTCCAC	0.507000													5	264					0	0	0.000602	0	0
ELL2	22936	broad.mit.edu	37	5	95226922	95226922	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:95226922T>C	uc003klr.3	-	10	1996	c.1646A>G	c.(1645-1647)AAT>AGT	p.N549S		NM_012081	NP_036213	O00472	ELL2_HUMAN	elongation factor, RNA polymerase II, 2	549					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				central_nervous_system(1)	1		all_cancers(142;2.04e-06)|all_epithelial(76;3.1e-09)|all_lung(232;0.00309)|Lung NSC(167;0.00454)|Ovarian(225;0.0165)|Colorectal(57;0.0343)|Breast(839;0.198)		all cancers(79;2.16e-15)		ATACTCTGCATTGAAGTCATC	0.393000													4	291					0	0	0.000602	0	0
SNCAIP	9627	broad.mit.edu	37	5	121780277	121780277	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:121780277C>A	uc003ksw.1	+	8	1648	c.1442C>A	c.(1441-1443)GCA>GAA	p.A481E	SNCAIP_uc011cwl.1_Missense_Mutation_p.A39E|SNCAIP_uc003ksx.1_Missense_Mutation_p.A528E|SNCAIP_uc003ksy.1_Missense_Mutation_p.A115E|SNCAIP_uc003ksz.1_Missense_Mutation_p.A115E|SNCAIP_uc010jcu.2_Missense_Mutation_p.A77E|SNCAIP_uc011cwm.1_Missense_Mutation_p.A115E|SNCAIP_uc003kta.1_Missense_Mutation_p.A113E|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.A175E|SNCAIP_uc010jcx.1_Missense_Mutation_p.A421E|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_5'UTR	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	481	ANK 4.				cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GAATATGGAGCAAATGTCACC	0.498000													6	384					0.00307968	0.00398615	0.003080	1	0
FSTL4	23105	broad.mit.edu	37	5	132569152	132569152	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:132569152G>A	uc003kyn.1	-	8	1190	c.972C>T	c.(970-972)TCC>TCT	p.S324S		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	324	Ig-like 1.					extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCTCGTGGCCGGAAGCATGGC	0.537000													4	494					0	0	0.001168	0	0
PHF15	23338	broad.mit.edu	37	5	133897953	133897953	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:133897953G>A	uc003kzo.1	+	7	927	c.748G>A	c.(748-750)GTC>ATC	p.V250I	PHF15_uc011cxt.1_Missense_Mutation_p.V250I|PHF15_uc003kzk.2_Missense_Mutation_p.V266I|PHF15_uc003kzl.2_Missense_Mutation_p.V250I|PHF15_uc003kzm.2_Missense_Mutation_p.V250I|PHF15_uc003kzn.2_Missense_Mutation_p.V250I|PHF15_uc003kzp.2_5'Flank	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	250					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGCCCTGGGTGTCCAGCCAAA	0.617000													5	420					0	0	0.001168	0	0
PCYOX1L	78991	broad.mit.edu	37	5	148742308	148742308	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:148742308G>A	uc003lqk.2	+	2	259	c.197G>A	c.(196-198)CGC>CAC	p.R66H	PCYOX1L_uc003lql.2_Missense_Mutation_p.R49H|PCYOX1L_uc010jgz.2_Missense_Mutation_p.R49H|PCYOX1L_uc003lqm.2_5'UTR|PCYOX1L_uc003lqn.2_5'UTR	NM_024028	NP_076933	Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like precursor	66					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGGTGGCCGCTTGGCCACC	0.612000													7	586					0	0	0.001984	0	0
DOCK2	1794	broad.mit.edu	37	5	169502990	169502990	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:169502990A>G	uc003maf.2	+	47	4848	c.4768A>G	c.(4768-4770)AGG>GGG	p.R1590G	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.R1082G|DOCK2_uc003mah.2_Missense_Mutation_p.R146G	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1590	DHR-2.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCATGAGAAAAGGGTGTCAGA	0.522000													5	615					0	0	0.001984	0	0
DOCK2	1794	broad.mit.edu	37	5	169504834	169504834	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:169504834T>C	uc003maf.2	+	48	5067	c.4987T>C	c.(4987-4989)TCA>CCA	p.S1663P	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.S1155P|DOCK2_uc003mah.2_Missense_Mutation_p.S219P	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1663					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAAGCCTACCTCAGAGAGGTC	0.592000													4	243					0	0	0.000248	0	0
ERGIC1	57222	broad.mit.edu	37	5	172341736	172341736	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:172341736G>A	uc003mbw.3	+	5	464	c.270G>A	c.(268-270)CAG>CAA	p.Q90Q	ERGIC1_uc003mby.3_5'UTR|ERGIC1_uc011dfa.1_Silent_p.Q35Q|ERGIC1_uc003mbz.3_Silent_p.Q45Q	NM_001031711	NP_001026881	Q969X5	ERGI1_HUMAN	endoplasmic reticulum-golgi intermediate	90	Lumenal (Potential).				ER to Golgi vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	protein binding			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTGACATTCAGGATGAGATGG	0.592000													4	308					0	0	0.000248	0	0
HIVEP1	3096	broad.mit.edu	37	6	12121829	12121829	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:12121829G>A	uc003nac.2	+	4	1980	c.1801G>A	c.(1801-1803)GTA>ATA	p.V601I	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	601					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GGTGACAAACGTACAGCCACT	0.498000													4	284					0	0	0.000602	0	0
HIST1H2BN	8341	broad.mit.edu	37	6	27806703	27806703	+	Silent	SNP	G	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:27806703G>C	uc003njv.2	+	1	264	c.264G>C	c.(262-264)TCG>TCC	p.S88S	HIST1H2AK_uc003njs.2_5'Flank|HIST1H2BN_uc003njt.1_RNA|HIST1H2BN_uc003nju.1_Silent_p.S88S	NM_003520	NP_003511	Q99877	H2B1N_HUMAN	histone cluster 1, H2bn	88					nucleosome assembly	nucleosome|nucleus	DNA binding				0						ACAAGCGCTCGACCATCACCT	0.637000													5	592					0	0	0.001168	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32712989	32712989	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:32712989G>A	uc003obx.2	+	2	194	c.136G>A	c.(136-138)GGC>AGC	p.G46S		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	46	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CGGTCCCTCTGGCCAGTACAC	0.498000													5	596					0	0	0.000602	0	0
PEX6	5190	broad.mit.edu	37	6	42933013	42933013	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:42933013G>A	uc003otf.2	-	14	2658	c.2565C>T	c.(2563-2565)GAC>GAT	p.D855D	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	855					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			GAAGGGCAGGGTCCAGGAGAT	0.587000													4	191					0	0	0.000248	0	0
VEGFA	7422	broad.mit.edu	37	6	43745289	43745289	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:43745289G>C	uc003owc.2	+	3	1233	c.202G>C	c.(202-204)GAG>CAG	p.E68Q	VEGFA_uc003owb.2_Missense_Mutation_p.E68Q|VEGFA_uc003owd.2_Missense_Mutation_p.E248Q|VEGFA_uc003owf.2_Missense_Mutation_p.E248Q|VEGFA_uc003owe.2_Missense_Mutation_p.E248Q|VEGFA_uc003owg.2_Missense_Mutation_p.E248Q|VEGFA_uc003owh.2_Missense_Mutation_p.E248Q|VEGFA_uc003owi.2_Missense_Mutation_p.E248Q|VEGFA_uc003owj.2_Missense_Mutation_p.E248Q|VEGFA_uc010jyx.2_Missense_Mutation_p.E68Q|VEGFA_uc003owk.2_5'Flank	NM_001025370	NP_001020541	P15692	VEGFA_HUMAN	vascular endothelial growth factor A isoform f	68					basophil chemotaxis|cellular response to hypoxia|induction of positive chemotaxis|induction of positive chemotaxis|platelet activation|platelet degranulation|platelet-derived growth factor receptor signaling pathway|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cell adhesion|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of leukocyte migration|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular permeability|regulation of cell shape|vascular endothelial growth factor receptor signaling pathway|vasculogenesis	cell surface|extracellular space|membrane|platelet alpha granule lumen	cell surface binding|chemoattractant activity|cytokine activity|fibronectin binding|growth factor activity|heparin binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|vascular endothelial growth factor receptor 1 binding|vascular endothelial growth factor receptor 2 binding|vascular endothelial growth factor receptor binding			ovary(1)|breast(1)	2	all_cancers(18;5.46e-07)|all_epithelial(2;5.96e-08)|Lung NSC(15;0.000157)|all_lung(25;0.000486)|Hepatocellular(11;0.00309)		all cancers(41;0.000413)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0742)|OV - Ovarian serous cystadenocarcinoma(102;0.196)		Atorvastatin(DB01076)|Bevacizumab(DB00112)|Carvedilol(DB01136)|Ginkgo biloba(DB01381)|Gliclazide(DB01120)|Minocycline(DB01017)|Ranibizumab(DB01270)|Simvastatin(DB00641)	GTACCCTGATGAGATCGAGTA	0.562000													4	264					0	0	0.001168	0	0
PKHD1	5314	broad.mit.edu	37	6	51924776	51924776	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:51924776C>A	uc003pah.1	-	15	1459	c.1183G>T	c.(1183-1185)GAT>TAT	p.D395Y	PKHD1_uc003pai.2_Missense_Mutation_p.D395Y	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	395	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GCTTGGCTATCTGCCTGAATC	0.448000													5	328					2.7689e-08	3.78379e-08	0.001984	1	0
UBE2CBP	90025	broad.mit.edu	37	6	83728737	83728737	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:83728737G>A	uc003pjp.2	-	8	1073	c.965C>T	c.(964-966)GCT>GTT	p.A322V	UBE2CBP_uc011dyx.1_RNA|UBE2CBP_uc003pjq.2_Missense_Mutation_p.A112V	NM_198920	NP_944602	Q7Z6J8	UB2CB_HUMAN	ubiquitin-conjugating enzyme E2C binding	322						cytoplasm	ligase activity			ovary(1)	1		all_cancers(76;0.000374)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.0548)		BRCA - Breast invasive adenocarcinoma(397;0.0944)		GACCTTGACAGCACTCCAGGC	0.373000													4	334					0	0	0.001984	0	0
TULP4	56995	broad.mit.edu	37	6	158923231	158923231	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:158923231A>C	uc003qrf.2	+	13	3893	c.2536A>C	c.(2536-2538)ACC>CCC	p.T846P	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	846					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CGCTGCCCCCACCACAGCAGC	0.652000													8	72					0	0	0.008291	0	0
DNAH11	8701	broad.mit.edu	37	7	21908553	21908553	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:21908553G>A	uc003svc.2	+	74	11963	c.11932G>A	c.(11932-11934)GTG>ATG	p.V3978M		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3978	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCAGGAGACGGTGGCAGAAGT	0.483000									Kartagener_syndrome				4	214					0	0	0.000248	0	0
DFNA5	1687	broad.mit.edu	37	7	24756980	24756980	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:24756980T>C	uc010kus.1	-	5	678	c.590A>G	c.(589-591)GAG>GGG	p.E197G	DFNA5_uc003swz.2_Missense_Mutation_p.E33G|DFNA5_uc003sxa.1_Missense_Mutation_p.E197G|DFNA5_uc010kut.1_Missense_Mutation_p.E33G|DFNA5_uc003sxb.2_Missense_Mutation_p.E197G	NM_001127453	NP_001120925	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5 protein isoform	197					sensory perception of sound					ovary(1)	1						ATTCCCATCCTCCGTCGCTGA	0.582000													3	208					0	0	0.000602	0	0
POU6F2	11281	broad.mit.edu	37	7	39247093	39247093	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:39247093G>A	uc003thb.1	+	4	427	c.385G>A	c.(385-387)GGA>AGA	p.G129R	POU6F2_uc010kxo.2_Missense_Mutation_p.G121R	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	129					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CAACATGGCGGGACAGCTAGG	0.602000													5	589					0	0	0.001168	0	0
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:57187809T>G	uc010kzo.2	-	5	1584	c.1313A>C	c.(1312-1314)AAA>ACA	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	438	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453000													10	277					0	0	0.001855	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130883	75130883	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:75130883G>A	uc011kfy.1	+	6	894	c.758G>A	c.(757-759)CGT>CAT	p.R253H		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	253	Arg-rich.										0						CAGTTAGGCCGTTCCATGAAC	0.592000													11	652					0	0	0.006214	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130895	75130895	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:75130895C>T	uc011kfy.1	+	6	906	c.770C>T	c.(769-771)CCG>CTG	p.P257L		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	257	Arg-rich.										0						TCCATGAACCCGAGGGCCAGG	0.592000													7	663					0	0	0.006214	0	0
MDH2	4191	broad.mit.edu	37	7	75695601	75695601	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:75695601A>G	uc003ueo.2	+	9	976	c.890A>G	c.(889-891)AAG>AGG	p.K297R	MDH2_uc003uep.2_Missense_Mutation_p.K190R|MDH2_uc011kgh.1_Missense_Mutation_p.K255R	NM_005918	NP_005909	P40926	MDHM_HUMAN	mitochondrial malate dehydrogenase precursor	297					gluconeogenesis|malate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus|plasma membrane	binding|L-malate dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					NADH(DB00157)	CCTCAGAAAAAGGGCATCGAG	0.522000													3	218					0	0	0.004672	0	0
CCDC146	57639	broad.mit.edu	37	7	76922424	76922424	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:76922424A>G	uc003uga.2	+	18	2698	c.2571A>G	c.(2569-2571)AAA>AAG	p.K857K	CCDC146_uc010ldp.2_Silent_p.K571K|CCDC146_uc003ugc.2_Silent_p.K194K	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	857										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				GGATAGAAAAAGGTCTGCCAC	0.438000													4	341					0	0	0.000248	0	0
MEPCE	56257	broad.mit.edu	37	7	100028470	100028470	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:100028470G>A	uc003uuw.2	+	1	942	c.829G>A	c.(829-831)GGA>AGA	p.G277R	ZCWPW1_uc003uut.2_5'Flank|ZCWPW1_uc011kjr.1_5'Flank|ZCWPW1_uc003uuu.1_5'Flank|ZCWPW1_uc011kjt.1_5'Flank|ZCWPW1_uc011kju.1_5'Flank|MEPCE_uc003uuv.2_5'UTR	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	277							methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCAGGCAGCCGGAGGGAGTGA	0.662000													5	587					0	0	0.000602	0	0
ZNF277	11179	broad.mit.edu	37	7	111976212	111976212	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:111976212G>A	uc003vge.2	+	8	984	c.855G>A	c.(853-855)CTG>CTA	p.L285L	ZNF277_uc003vgf.2_Silent_p.L207L|ZNF277_uc003vgg.2_Silent_p.L110L	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277	285						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						GGGAGTTGCTGGACCATCAGG	0.418000													4	278					0	0	0.000602	0	0
FOXP2	93986	broad.mit.edu	37	7	114270000	114270000	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:114270000G>A	uc003vhb.2	+	5	911	c.537G>A	c.(535-537)CAG>CAA	p.Q179Q	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.Q204Q|FOXP2_uc003vha.2_Silent_p.Q87Q|FOXP2_uc011kmu.1_Silent_p.Q196Q|FOXP2_uc011kmv.1_Silent_p.Q179Q|FOXP2_uc010ljz.1_Silent_p.Q87Q|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_Silent_p.Q179Q|FOXP2_uc003vgx.2_Silent_p.Q179Q|FOXP2_uc003vhd.2_Silent_p.Q179Q|FOXP2_uc003vhc.2_Silent_p.Q204Q	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	179	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						agcaacaacagcagcagcagc	0.159000													4	132					0	0	0.000602	0	0
OR2A12	346525	broad.mit.edu	37	7	143792898	143792898	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:143792898G>A	uc011kty.1	+	1	698	c.698G>A	c.(697-699)CGC>CAC	p.R233H		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					GGGGAGGGCCGCAGAAAGGCC	0.592000													6	685					0	0	0.001168	0	0
ELP3	55140	broad.mit.edu	37	8	27957459	27957459	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:27957459G>A	uc003xgo.3	+	3	382	c.234G>A	c.(232-234)GCG>GCA	p.A78A	ELP3_uc003xgn.3_Silent_p.A63A|ELP3_uc011laq.1_Silent_p.A6A|ELP3_uc011lar.1_Intron|ELP3_uc011las.1_5'UTR|ELP3_uc011lat.1_Intron	NM_018091	NP_060561	Q9H9T3	ELP3_HUMAN	elongation protein 3 homolog	78					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	histone acetyltransferase activity|iron-sulfur cluster binding|metal ion binding|phosphorylase kinase regulator activity|protein binding				0		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.151)|Colorectal(74;0.183)		AGTTAAAGGCGAAACCCATCA	0.547000													4	321					0	0	0.000602	0	0
GPR124	25960	broad.mit.edu	37	8	37697671	37697671	+	Silent	SNP	C	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:37697671C>A	uc003xkj.2	+	17	2907	c.2544C>A	c.(2542-2544)TCC>TCA	p.S848S	GPR124_uc010lvy.2_Silent_p.S631S	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	848	Helical; Name=3; (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			CCTCCCTATCCACGCTGCTCT	0.657000													5	272					0.00116845	0.00152387	0.001168	1	0
ASH2L	9070	broad.mit.edu	37	8	37978477	37978477	+	Silent	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:37978477T>C	uc003xkt.3	+	10	1033	c.975T>C	c.(973-975)CTT>CTC	p.L325L	ASH2L_uc011lbk.1_Silent_p.L186L|ASH2L_uc003xku.3_Silent_p.L231L|ASH2L_uc010lwa.2_Silent_p.L231L	NM_004674	NP_004665	Q9UBL3	ASH2L_HUMAN	ash2-like isoform a	325					hemopoiesis|histone H3-K4 methylation|positive regulation of cell proliferation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription from RNA polymerase II promoter	Set1C/COMPASS complex	metal ion binding|protein binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2	Colorectal(12;0.000501)	Lung NSC(58;0.0295)|all_lung(54;0.0413)				CTCAGCGCCTTCCCCCTCATG	0.468000											OREG0018719	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	473					0	0	0.003080	0	0
ANK1	286	broad.mit.edu	37	8	41573339	41573339	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:41573339G>A	uc003xok.2	-	14	1517	c.1433C>T	c.(1432-1434)GCT>GTT	p.A478V	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.A478V|ANK1_uc003xoj.2_Missense_Mutation_p.A478V|ANK1_uc003xol.2_Missense_Mutation_p.A478V|ANK1_uc003xom.2_Missense_Mutation_p.A511V	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	478	ANK 14.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GCCGATGCGAGCTGCACAGTG	0.458000													6	341					0	0	0.001984	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766675	77766675	+	Silent	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:77766675A>G	uc003yav.2	+	10	7770	c.7383A>G	c.(7381-7383)GAA>GAG	p.E2461E	ZFHX4_uc003yau.1_Silent_p.E2506E|ZFHX4_uc003yaw.1_Silent_p.E2461E	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2461	C2H2-type 16.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAACTCTGGAACTCTGGCAGG	0.478000										HNSCC(33;0.089)			16	581					0	0	0.001882	0	0
DCAF13	25879	broad.mit.edu	37	8	104427620	104427620	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:104427620G>A	uc003yln.2	+	1	679	c.402G>A	c.(400-402)CGG>CGA	p.R134R	SLC25A32_uc003yll.2_5'Flank|SLC25A32_uc011lhr.1_5'Flank|DCAF13_uc003ylm.1_Translation_Start_Site|DCAF13_uc003ylo.2_Translation_Start_Site	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	Error:Variant_position_missing_in_Q9NV06_after_alignment					rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						GGAGGTGGCGGTGGGCGGAAC	0.632000													4	202					0	0	0.000248	0	0
KCNV1	27012	broad.mit.edu	37	8	110984838	110984838	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:110984838C>T	uc003ynr.3	-	2	982	c.640G>A	c.(640-642)GTC>ATC	p.V214I	KCNV1_uc010mcw.2_Missense_Mutation_p.V214I	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	214	Helical; Name=Segment S1; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			ATGGAGATGACGCCAAAGATA	0.517000													4	198					0	0	0.000602	0	0
FER1L6	654463	broad.mit.edu	37	8	125033828	125033828	+	Silent	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:125033828G>A	uc003yqw.2	+	17	2258	c.2052G>A	c.(2050-2052)CAG>CAA	p.Q684Q	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	684	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TCATTCAGCAGCAGAAGAAAA	0.438000													5	544					0	0	0.001168	0	0
TSTA3	7264	broad.mit.edu	37	8	144695458	144695458	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:144695458G>A	uc003yza.2	-	10	854	c.818C>T	c.(817-819)ACA>ATA	p.T273I	TSTA3_uc003yzb.2_Missense_Mutation_p.T273I	NM_003313	NP_003304	Q13630	FCL_HUMAN	tissue specific transplantation antigen P35B	273					'de novo' GDP-L-fucose biosynthetic process|leukocyte cell-cell adhesion		coenzyme binding|electron carrier activity|GDP-4-dehydro-D-rhamnose reductase activity|GDP-L-fucose synthase activity|isomerase activity			pancreas(1)	1	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.17e-38)|Epithelial(56;7.17e-37)|all cancers(56;2.46e-32)|Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)		NADH(DB00157)	CGACTTGGTTGTATCAAACTG	0.587000													4	302					0	0	0.000248	0	0
PSIP1	11168	broad.mit.edu	37	9	15474206	15474206	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:15474206T>C	uc003zlv.3	-	9	989	c.659A>G	c.(658-660)AAG>AGG	p.K220R	PSIP1_uc003zlw.3_Missense_Mutation_p.K220R|PSIP1_uc003zlz.3_Missense_Mutation_p.K220R|PSIP1_uc003zma.3_Missense_Mutation_p.K211R|PSIP1_uc003zly.2_Missense_Mutation_p.K220R	NM_033222	NP_150091	O75475	PSIP1_HUMAN	PC4 and SFRS1 interacting protein 1 isoform 2	220					initiation of viral infection|interspecies interaction between organisms|nuclear mRNA 5'-splice site recognition|provirus integration|regulation of transcription, DNA-dependent|response to heat|response to oxidative stress|transcription, DNA-dependent	cytosol|nuclear heterochromatin|nuclear periphery|nucleoplasm|nucleoplasm|transcriptionally active chromatin	activating transcription factor binding|chromatin binding|DNA secondary structure binding|RNA polymerase II transcription coactivator activity			breast(1)	1				GBM - Glioblastoma multiforme(50;2.38e-06)		CTCTTGCCCCTTTTTCTTACT	0.358000													4	425					0	0	0.001984	0	0
NOL6	65083	broad.mit.edu	37	9	33466402	33466402	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:33466402G>A	uc003zsz.2	-	17	2214	c.2113C>T	c.(2113-2115)CGT>TGT	p.R705C	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Missense_Mutation_p.R702C|NOL6_uc011lob.1_Missense_Mutation_p.R653C|NOL6_uc003ztb.1_Missense_Mutation_p.R705C	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	705					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		AAGGCTGGACGGACTGGAGTT	0.607000											OREG0019137	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	314					0	0	0.001168	0	0
KIAA1045	23349	broad.mit.edu	37	9	34976561	34976561	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:34976561C>T	uc003zvq.2	+	5	851	c.673C>T	c.(673-675)CGT>TGT	p.R225C	KIAA1045_uc003zvr.2_Missense_Mutation_p.R225C	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	225							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			GGACTTTCTGCGTTACCGCCA	0.647000													18	249					0	0	0.007413	0	0
PHF2	5253	broad.mit.edu	37	9	96439885	96439885	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:96439885A>G	uc004aub.2	+	22	3365	c.3218A>G	c.(3217-3219)AAG>AGG	p.K1073R	PHF2_uc004auc.2_Intron	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	1073					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		CGTACGAAAAAGGGCATGGCG	0.542000													4	686					0	0	0.000248	0	0
COL15A1	1306	broad.mit.edu	37	9	101765778	101765778	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:101765778G>A	uc004azb.1	+	8	1315	c.1109G>A	c.(1108-1110)AGC>AAC	p.S370N		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	370	Nonhelical region 1 (NC1).|1.|4 X tandem repeats.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GTGCCCATCAGCACTGCTGGA	0.577000													4	444					0	0	0.000248	0	0
SNX30	401548	broad.mit.edu	37	9	115600978	115600978	+	Splice_Site	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:115600978G>A	uc004bgj.3	+	6	1162	c.1014_splice	c.e6+1	p.K338_splice	SNX30_uc004bgi.3_Splice_Site_p.K20_splice	NM_001012994	NP_001013012	Q5VWJ9	SNX30_HUMAN	sorting nexin family member 30						cell communication|protein transport	cytoplasm	phosphatidylinositol binding				0						CTCCATGAAGGTAAGCTGGCT	0.393000													4	195					0	0	0.000248	0	0
CRB2	286204	broad.mit.edu	37	9	126125392	126125392	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:126125392C>G	uc004bnx.1	+	2	435	c.343C>G	c.(343-345)CGG>GGG	p.R115G	CRB2_uc004bnw.1_Missense_Mutation_p.R115G	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	115	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GTGTGCATCCCGGCCGTGCCA	0.677000													4	147					0	0	0.000602	0	0
MAN1B1	11253	broad.mit.edu	37	9	139995541	139995541	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:139995541G>A	uc004cld.2	+	7	1036	c.1001G>A	c.(1000-1002)CGC>CAC	p.R334H	MAN1B1_uc004clc.2_Missense_Mutation_p.R235H|MAN1B1_uc011meo.1_Missense_Mutation_p.R235H|MAN1B1_uc011mep.1_Missense_Mutation_p.R334H|MAN1B1_uc010ncc.2_RNA|MAN1B1_uc004clf.1_5'Flank	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	334	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		AGCACGATCCGCATCCTGGGG	0.532000													5	383					0	0	0.001168	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071002	141071002	+	Silent	SNP	A	G	G	rs28433994		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:141071002A>G	uc004com.2	+	4	666	c.405A>G	c.(403-405)CTA>CTG	p.L135L	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						ACGAAGCGCTATATGACATAT	0.537000													6	250					0	0	0.004482	0	0
ASMT	438	broad.mit.edu	37	X	1743228	1743228	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:1743228G>A	uc004cqd.2	+	4	456	c.311G>A	c.(310-312)AGC>AAC	p.S104N	ASMT_uc010ncy.2_Missense_Mutation_p.S104N|ASMT_uc004cqe.2_Missense_Mutation_p.S104N	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	104					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCACAATGCAGCATGCTGAAG	0.587000													6	648					0	0	0.001984	0	0
ZBED1	9189	broad.mit.edu	37	X	2407867	2407867	+	Silent	SNP	G	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:2407867G>T	uc004cqg.2	-	2	1095	c.894C>A	c.(892-894)GGC>GGA	p.G298G	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Silent_p.G298G	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	298						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCTGCTGGATGCCGGCATTGA	0.642000													8	430					3.07112e-06	4.11482e-06	0.000978	1	0
SAT1	6303	broad.mit.edu	37	X	23801949	23801949	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:23801949T>C	uc004dau.2	+	3	345	c.151T>C	c.(151-153)TTT>CTT	p.F51L	SAT1_uc010nfv.2_Missense_Mutation_p.F51L|SAT1_uc004dav.2_RNA	NM_002970	NP_002961	P21673	SAT1_HUMAN	diamine N-acetyltransferase 1	51	N-acetyltransferase.				angiogenesis|polyamine biosynthetic process	cytosol	diamine N-acetyltransferase activity|protein binding				0					Spermine(DB00127)	AGAGCACCCCTTTTACCACTG	0.562000													4	210					0	0	0.001984	0	0
PFKFB1	5207	broad.mit.edu	37	X	54987327	54987327	+	Nonsense_Mutation	SNP	G	A	A	rs147665375		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:54987327G>A	uc004dty.1	-	3	318	c.247C>T	c.(247-249)CGA>TGA	p.R83*	PFKFB1_uc010nkd.1_Intron|PFKFB1_uc011mol.1_Nonsense_Mutation_p.R18*	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	83	6-phosphofructo-2-kinase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						ACTGCCTCTCGTCGATACTGG	0.468000													5	134					0	0	0.001984	0	0
ZXDA	7789	broad.mit.edu	37	X	57935641	57935641	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:57935641G>A	uc004dve.2	-	1	1427	c.1214C>T	c.(1213-1215)GCT>GTT	p.A405V		NM_007156	NP_009087	P98168	ZXDA_HUMAN	zinc finger, X-linked, duplicated A	405	C2H2-type 5.|Required for interaction with ZXDC.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGAAAACAGAGCACTCACTGT	0.537000													4	229					0	0	0.000248	0	0
SYTL4	94121	broad.mit.edu	37	X	99941732	99941732	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:99941732T>C	uc004egd.3	-	14	1587	c.1231A>G	c.(1231-1233)AGA>GGA	p.R411G	SYTL4_uc010nnb.2_Missense_Mutation_p.R83G|SYTL4_uc010nnc.2_Missense_Mutation_p.R411G|SYTL4_uc004ege.3_Missense_Mutation_p.R411G|SYTL4_uc004egf.3_Missense_Mutation_p.R411G|SYTL4_uc004egg.3_3'UTR	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	411	C2 1.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTGGTTTTTCTTTTTCCTTGG	0.443000													3	65					0	0	0.004672	0	0
ACSL4	2182	broad.mit.edu	37	X	108906581	108906581	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:108906581C>A	uc004eoi.2	-	14	2069	c.1564G>T	c.(1564-1566)GGT>TGT	p.G522C	ACSL4_uc004eoj.2_Missense_Mutation_p.G481C|ACSL4_uc004eok.2_Missense_Mutation_p.G481C|ACSL4_uc010npp.1_Missense_Mutation_p.G522C	NM_022977	NP_075266	O60488	ACSL4_HUMAN	acyl-CoA synthetase long-chain family member 4	522	Cytoplasmic (Potential).				fatty acid metabolic process|learning or memory|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(1)|lung(1)|ovary(1)	3					Icosapent(DB00159)|Troglitazone(DB00197)	TTCTGTCCACCAATTACGATT	0.348000													6	481					2.74318e-10	3.77876e-10	0.006214	1	0
RGAG1	57529	broad.mit.edu	37	X	109695238	109695238	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:109695238G>A	uc004eor.1	+	3	1639	c.1393G>A	c.(1393-1395)GCA>ACA	p.A465T	RGAG1_uc011msr.1_Missense_Mutation_p.A465T	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	465										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						AGTAATGTCCGCACAGTTAAC	0.512000													5	303					0	0	0.001168	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6536011	6536013	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:6536011_6536013delCTC	uc001ano.1	-	4	396_398	c.295_297delGAG	c.(295-297)GAGdel	p.E99del	PLEKHG5_uc001ann.1_In_Frame_Del_p.E80del|PLEKHG5_uc001anq.1_In_Frame_Del_p.E120del|PLEKHG5_uc001anp.1_In_Frame_Del_p.E120del|PLEKHG5_uc009vma.1_5'UTR|PLEKHG5_uc010nzr.1_In_Frame_Del_p.E112del|PLEKHG5_uc001ank.1_In_Frame_Del_p.E43del|PLEKHG5_uc009vmb.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anl.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anm.1_In_Frame_Del_p.E43del	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	99	Poly-Glu.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CCACAGAGCTCTCCTCCTCCTCC	0.631											OREG0013041	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	636	---	---	---	---					
TAS1R1	80835	broad.mit.edu	37	1	6638843	6638845	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:6638843_6638845delGCT	uc001ant.2	+	6	1725_1727	c.1725_1727delGCT	c.(1723-1728)ACGCTG>ACG	p.L582del	TAS1R1_uc001anu.2_In_Frame_Del_p.L328del|TAS1R1_uc001anv.2_Intron|TAS1R1_uc001anw.2_In_Frame_Del_p.C470del|ZBTB48_uc009vmc.1_5'Flank|ZBTB48_uc001anx.2_5'Flank|ZBTB48_uc009vmd.1_5'Flank	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	582	Helical; Name=1; (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		CAGCTAACACgctgctgctgctg	0.542													7	216	---	---	---	---					
CLSTN1	22883	broad.mit.edu	37	1	9790640	9790642	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:9790640_9790642delCCT	uc001aqh.2	-	19	3629_3631	c.2870_2872delAGG	c.(2869-2874)GAGGGG>GGG	p.E957del	CLSTN1_uc001aqi.2_In_Frame_Del_p.E947del|CLSTN1_uc010oag.1_In_Frame_Del_p.E938del|CLSTN1_uc001aqf.2_In_Frame_Del_p.E221del	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	957	Glu-rich (highly acidic).|Cytoplasmic (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		CCCTGCTCCCCCTCCTCCTCCTC	0.557													9	464	---	---	---	---					
ARID1A	8289	broad.mit.edu	37	1	27105931	27105931	+	Frame_Shift_Del	DEL	G	-	-	rs140055856		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:27105931delG	uc001bmv.1	+	20	5915	c.5542delG	c.(5542-5544)GGGfs	p.G1848fs	ARID1A_uc001bmu.1_Frame_Shift_Del_p.G1631fs|ARID1A_uc001bmx.1_Frame_Shift_Del_p.G694fs|ARID1A_uc009vsm.1_Frame_Shift_Del_p.G176fs|ARID1A_uc009vsn.1_Frame_Shift_Del_p.G90fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1848					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding	p.G1848fs*6(3)		ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GCGGATTGGTGGGGGGGACAC	0.582			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								9	633	---	---	---	---					
WASF2	10163	broad.mit.edu	37	1	27736326	27736328	+	In_Frame_Del	DEL	GGA	-	-	rs150974534		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:27736326_27736328delGGA	uc001bof.1	-	8	1413_1415	c.1197_1199delTCC	c.(1195-1200)CCTCCG>CCG	p.399_400PP>P	WASF2_uc010ofl.1_Intron	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	399_400	Poly-Pro.				actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		AGGGGGCCCCggaggaggaggag	0.537													7	243	---	---	---	---					
XKR8	55113	broad.mit.edu	37	1	28293145	28293147	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:28293145_28293147delCTG	uc001bph.1	+	3	699_701	c.622_624delCTG	c.(622-624)CTGdel	p.L211del		NM_018053	NP_060523	Q9H6D3	XKR8_HUMAN	XK, Kell blood group complex subunit-related	211	Helical; (Potential).					integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00588)|all_lung(284;0.00645)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;4.72e-24)|Colorectal(126;1.52e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00572)|READ - Rectum adenocarcinoma(331;0.0526)		CCTGTGGAACCTGCTGCTGCTGT	0.665													8	726	---	---	---	---					
RSPO1	284654	broad.mit.edu	37	1	38078467	38078469	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:38078467_38078469delTGC	uc001cbl.1	-	8	1538_1540	c.750_752delGCA	c.(748-753)CAGCAA>CAA	p.250_251QQ>Q	RSPO1_uc001cbm.1_In_Frame_Del_p.250_251QQ>Q|RSPO1_uc009vvf.1_In_Frame_Del_p.223_224QQ>Q|RSPO1_uc009vvg.1_In_Frame_Del_p.187_188QQ>Q	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	250_251					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CACTGTCCCTTGCTGCTGCTGCT	0.621													16	784	---	---	---	---					
PABPC4	8761	broad.mit.edu	37	1	40028016	40028016	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:40028016delG	uc010oiv.1	-	13	2591	c.1693delC	c.(1693-1695)CAGfs	p.Q565fs	PPIEL_uc001cdk.2_5'Flank|PABPC4_uc001cdl.2_Frame_Shift_Del_p.Q581fs|PABPC4_uc001cdm.2_Frame_Shift_Del_p.Q552fs	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	565	PABC.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			TTCTGTTCCTGGGGGGGTGCT	0.602													11	594	---	---	---	---					
PTPRF	5792	broad.mit.edu	37	1	44071946	44071948	+	In_Frame_Del	DEL	GCG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:44071946_44071948delGCG	uc001cjr.2	+	20	3859_3861	c.3519_3521delGCG	c.(3517-3522)CAGCGG>CAG	p.R1178del	PTPRF_uc001cjs.2_In_Frame_Del_p.R1169del|PTPRF_uc001cju.2_In_Frame_Del_p.R556del|PTPRF_uc009vwt.2_In_Frame_Del_p.R738del|PTPRF_uc001cjv.2_In_Frame_Del_p.R638del|PTPRF_uc001cjw.2_In_Frame_Del_p.R404del	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1178	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GAGAGGAGCAGCGGCGGCGGCGG	0.631													10	491	---	---	---	---					
TMEM59	9528	broad.mit.edu	37	1	54518796	54518798	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:54518796_54518798delCAG	uc001cwp.2	-	1	314_316	c.64_66delCTG	c.(64-66)CTGdel	p.L22del	C1orf83_uc001cwt.1_5'Flank|C1orf83_uc001cwu.1_5'Flank|TMEM59_uc001cwq.2_In_Frame_Del_p.L22del|TMEM59_uc001cwr.2_In_Frame_Del_p.L22del|TMEM59_uc001cws.1_In_Frame_Del_p.L22del	NM_004872	NP_004863	Q9BXS4	TMM59_HUMAN	thymic dendritic cell-derived factor 1	22						Golgi membrane|integral to membrane					0						AGGCCATGGTCAGCAGCAGCAGC	0.640													8	484	---	---	---	---					
JAK1	3716	broad.mit.edu	37	1	65306996	65306997	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:65306996_65306997insT	uc001dbu.1	-	19	2829_2830	c.2580_2581insA	c.(2578-2583)AAACCAfs	p.K860fs	JAK1_uc009wam.1_Frame_Shift_Ins_p.K848fs|JAK1_uc009wal.1_Frame_Shift_Ins_p.K37fs	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	860_861					interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		TCAGTTGCTGGTTTTTTTTCTG	0.470			Mis		ALL								11	390	---	---	---	---					
TNNI3K	51086	broad.mit.edu	37	1	74957824	74957826	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:74957824_74957826delCTT	uc001dgf.1	+	23	2276_2278	c.2225_2227delCTT	c.(2224-2229)CCTTCT>CCT	p.S746del	TNNI3K_uc001dge.1_In_Frame_Del_p.S847del	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	746	Poly-Ser.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TCTCTCTCACCTTCTTCTTCTTC	0.473													12	931	---	---	---	---					
CLCA4	22802	broad.mit.edu	37	1	87029432	87029432	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:87029432delA	uc009wcs.2	+	4	581	c.537delA	c.(535-537)TCAfs	p.S179fs	CLCA4_uc009wct.2_Intron|CLCA4_uc009wcu.2_Intron	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	179						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		GTGCTAAGTCAAAAAAAATCG	0.403													7	233	---	---	---	---					
MCL1	4170	broad.mit.edu	37	1	150551492	150551494	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:150551492_150551494delTCC	uc001euz.2	-	1	643_645	c.513_515delGGA	c.(511-516)GAGGAC>GAC	p.E171del	MCL1_uc010pch.1_In_Frame_Del_p.E61del|MCL1_uc001eva.2_In_Frame_Del_p.E171del	NM_021960	NP_068779	Q07820	MCL1_HUMAN	myeloid cell leukemia sequence 1 isoform 1	171	PEST-like.				anti-apoptosis|apoptosis|cell fate determination|cellular homeostasis|multicellular organismal development|response to cytokine stimulus	integral to membrane|mitochondrial outer membrane|nucleoplasm	BH3 domain binding|protein binding|protein channel activity|protein heterodimerization activity				0	all_cancers(9;1.69e-53)|all_epithelial(9;1.95e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GTACAACTCGTCCTCCTCCTCCT	0.635													13	441	---	---	---	---					
PSMB4	5692	broad.mit.edu	37	1	151374040	151374040	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:151374040delA	uc001eyc.1	+	6	739	c.716delA	c.(715-717)GAAfs	p.E239fs	PSMB4_uc001eyb.1_3'UTR	NM_002796	NP_002787	P28070	PSB4_HUMAN	proteasome beta 4 subunit	239					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ACTGTCACCGAAAAAGGTGTT	0.443													11	888	---	---	---	---					
BCAN	63827	broad.mit.edu	37	1	156626160	156626160	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:156626160delG	uc001fpp.2	+	9	2365	c.2029delG	c.(2029-2031)GGGfs	p.G677fs		NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	677	EGF-like.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCCTGGCTATGGGGGGGACCT	0.622													7	851	---	---	---	---					
NES	10763	broad.mit.edu	37	1	156642804	156642804	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:156642804delG	uc001fpq.2	-	4	1309	c.1176delC	c.(1174-1176)CCCfs	p.P392fs		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	392	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCTGAGGTGTGGGGGGGATGG	0.597													10	1095	---	---	---	---					
NOS1AP	9722	broad.mit.edu	37	1	162326888	162326890	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:162326888_162326890delCAG	uc001gbv.2	+	8	1288_1290	c.901_903delCAG	c.(901-903)CAGdel	p.Q306del	NOS1AP_uc010pkr.1_In_Frame_Del_p.Q301del|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_In_Frame_Del_p.Q301del	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	306	Poly-Gln.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			gcagctcctccagcagcAGCAGC	0.512													14	249	---	---	---	---					
LMX1A	4009	broad.mit.edu	37	1	165177332	165177334	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:165177332_165177334delTGC	uc001gcy.1	-	6	1004_1006	c.783_785delGCA	c.(781-786)CAGCAA>CAA	p.261_262QQ>Q	LMX1A_uc001gcz.1_In_Frame_Del_p.261_262QQ>Q|LMX1A_uc001gcw.1_5'UTR|LMX1A_uc001gcx.1_In_Frame_Del_p.12_13QQ>Q	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	261_262	Poly-Gln.|Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CTGCTGATCTTGCTGCTGCTGCT	0.567													11	207	---	---	---	---					
POU2F1	5451	broad.mit.edu	37	1	167385016	167385018	+	In_Frame_Del	DEL	CCA	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:167385016_167385018delCCA	uc001gec.2	+	17	2363_2365	c.2201_2203delCCA	c.(2200-2205)TCCACC>TCC	p.T738del	POU2F1_uc001ged.2_In_Frame_Del_p.T736del|POU2F1_uc001gee.2_In_Frame_Del_p.T738del|POU2F1_uc010plh.1_In_Frame_Del_p.T675del|POU2F1_uc001gef.2_In_Frame_Del_p.T750del|POU2F1_uc001geg.2_Intron	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	738					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						GGGGCTGCGTCCACCACCACCAC	0.601													13	1105	---	---	---	---					
INTS7	25896	broad.mit.edu	37	1	212115191	212115193	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr1:212115191_212115193delTGC	uc001hiw.1	-	20	2967_2969	c.2862_2864delGCA	c.(2860-2865)CAGCAA>CAA	p.954_955QQ>Q	INTS7_uc009xdb.1_In_Frame_Del_p.934_935QQ>Q|INTS7_uc001hix.1_In_Frame_Del_p.830_831QQ>Q|INTS7_uc001hiy.1_In_Frame_Del_p.940_941QQ>Q|INTS7_uc010pta.1_In_Frame_Del_p.905_906QQ>Q	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	954_955	Gln-rich.				snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		GGCATTGCGTTGCTGCTGCTGCT	0.443													8	812	---	---	---	---					
KIAA1462	57608	broad.mit.edu	37	10	30316501	30316503	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:30316501_30316503delCTG	uc001iux.2	-	2	2633_2635	c.2574_2576delCAG	c.(2572-2577)AGCAGT>AGT	p.858_859SS>S	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_In_Frame_Del_p.720_721SS>S|KIAA1462_uc009xle.1_In_Frame_Del_p.858_859SS>S	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	858_859	Ser-rich.									ovary(4)	4						ACTCTCCTCActgctgctgctgc	0.463													18	320	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	51821328	51821328	+	RNA	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:51821328delG	uc001jiz.1	-	2		c.1307delC								Homo sapiens cDNA FLJ31813 fis, clone NT2RI2009517.																		CGGTCAGCTTGGGGGGTGCGA	0.517													7	768	---	---	---	---					
PRF1	5551	broad.mit.edu	37	10	72358622	72358624	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:72358622_72358624delCTT	uc009xqg.2	-	3	1014_1016	c.853_855delAAG	c.(853-855)AAGdel	p.K285del	PRF1_uc001jrf.3_In_Frame_Del_p.K285del	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	285	MACPF.		Missing (in FHL2).		apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TCATCTTGTGCTTCTTCTTCTTC	0.591			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				9	379	---	---	---	---					
CNNM2	54805	broad.mit.edu	37	10	104836780	104836780	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:104836780delC	uc001kwm.2	+	8	2595	c.2471delC	c.(2470-2472)ACCfs	p.T824fs	CNNM2_uc001kwn.2_Frame_Shift_Del_p.T802fs	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	824					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		ATGGACAAAACCCCCCAGTCT	0.473													7	664	---	---	---	---					
SH3PXD2A	9644	broad.mit.edu	37	10	105362849	105362851	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr10:105362849_105362851delGAG	uc001kxj.1	-	14	2180_2182	c.2040_2042delCTC	c.(2038-2043)TCCTCT>TCT	p.680_681SS>S	SH3PXD2A_uc010qqr.1_Intron|SH3PXD2A_uc010qqs.1_In_Frame_Del_p.515_516SS>S|SH3PXD2A_uc010qqt.1_In_Frame_Del_p.557_558SS>S|SH3PXD2A_uc009xxn.1_In_Frame_Del_p.515_516SS>S|SH3PXD2A_uc010qqu.1_In_Frame_Del_p.623_624SS>S	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	708_709	Ser-rich.				cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		GGACAaggaagaggaggaggagg	0.493													7	569	---	---	---	---					
TMEM132A	54972	broad.mit.edu	37	11	60703785	60703787	+	In_Frame_Del	DEL	GGA	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:60703785_60703787delGGA	uc001nqj.2	+	11	2671_2673	c.2478_2480delGGA	c.(2476-2481)AGGGAG>AGG	p.E835del	TMEM132A_uc001nqi.2_In_Frame_Del_p.E836del|TMEM132A_uc001nqm.2_In_Frame_Del_p.E45del	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	835	Glu-rich.|Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CCGAAGCCAGggaggaggaggag	0.547													7	444	---	---	---	---					
NUMA1	4926	broad.mit.edu	37	11	71724190	71724190	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:71724190delC	uc001orl.1	-	15	4531	c.4359delG	c.(4357-4359)GGGfs	p.G1453fs	NUMA1_uc009ysw.1_Frame_Shift_Del_p.G1016fs|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Frame_Shift_Del_p.G1453fs|NUMA1_uc001orn.2_Frame_Shift_Del_p.G1016fs|NUMA1_uc009ysx.1_Frame_Shift_Del_p.G1453fs|NUMA1_uc001oro.1_Frame_Shift_Del_p.G1453fs	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1453	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						GCTCACCCAGCCCCCGGTTCT	0.622			T	RARA	APL								7	1041	---	---	---	---					
BCL9L	283149	broad.mit.edu	37	11	118770651	118770652	+	Frame_Shift_Ins	INS	-	G	G	rs139987150		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:118770651_118770652insG	uc001pug.2	-	7	4345_4346	c.3380_3381insC	c.(3379-3381)CCAfs	p.P1127fs	BCL9L_uc009zal.2_Frame_Shift_Ins_p.P1122fs	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1127	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GCGGTGGTGGTGGGGGGGGCAG	0.703													10	244	---	---	---	---					
DPAGT1	1798	broad.mit.edu	37	11	118967854	118967856	+	In_Frame_Del	DEL	GCA	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr11:118967854_118967856delGCA	uc001pvi.2	-	8	1577_1579	c.1157_1159delTGC	c.(1156-1161)CTGCAG>CAG	p.L386del	H2AFX_uc001pvg.2_5'Flank|H2AFX_uc001pvh.1_5'Flank|DPAGT1_uc001pvj.2_In_Frame_Del_p.L279del|DPAGT1_uc009zaq.2_RNA|DPAGT1_uc001pvk.2_In_Frame_Del_p.L214del|DPAGT1_uc010ryz.1_In_Frame_Del_p.L386del|DPAGT1_uc001pvm.1_3'UTR|DPAGT1_uc010rza.1_In_Frame_Del_p.L279del	NM_001382	NP_001373	Q9H3H5	GPT_HUMAN	UDP-N-acetylglucosamine-dolichyl-phosphate	386	Helical; (Potential).				dolichol biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein oligomerization	integral to endoplasmic reticulum membrane|microsome	phospho-N-acetylmuramoyl-pentapeptide-transferase activity|transferase activity, transferring glycosyl groups|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity			breast(2)|ovary(1)	3	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.55e-05)		ATCCTCACCTGCAGCAGCAGCAG	0.488													7	628	---	---	---	---					
SFRS2IP	9169	broad.mit.edu	37	12	46318575	46318577	+	In_Frame_Del	DEL	GGT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:46318575_46318577delGGT	uc001rox.2	-	12	4127_4129	c.3840_3842delACC	c.(3838-3843)CCACCC>CCC	p.1280_1281PP>P	SFRS2IP_uc001row.2_In_Frame_Del_p.965_966PP>P	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1280_1281	Pro-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		TGGGGGAGGGGGTGGTGGTGGTG	0.483													8	689	---	---	---	---					
PRPF40B	25766	broad.mit.edu	37	12	50025258	50025258	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:50025258delC	uc001rur.1	+	2	157	c.93delC	c.(91-93)ATCfs	p.I31fs	PRPF40B_uc001rup.1_Frame_Shift_Del_p.I53fs|PRPF40B_uc001ruq.1_Frame_Shift_Del_p.I25fs|PRPF40B_uc001rus.1_5'Flank	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	31	Pro-rich.				mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						CACCAGCTATCCCCCCCATGC	0.607													7	784	---	---	---	---					
OR10A7	121364	broad.mit.edu	37	12	55615114	55615116	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:55615114_55615116delCTT	uc010spf.1	+	1	306_308	c.306_308delCTT	c.(304-309)TACTTC>TAC	p.F107del		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						CCCAGATGTACTTCTTCTTCTTC	0.414													15	646	---	---	---	---					
SLC26A10	65012	broad.mit.edu	37	12	58014154	58014154	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:58014154delC	uc001spe.2	+	1	462	c.151delC	c.(151-153)CCCfs	p.P51fs	uc001spc.2_5'Flank|SLC26A10_uc001spf.2_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	51	Helical; (Potential).					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					GGCCTCCGTGCCCCCGGTGTT	0.562													7	3355	---	---	---	---					
B4GALNT1	2583	broad.mit.edu	37	12	58025102	58025103	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:58025102_58025103insC	uc001spg.1	-	3	695_696	c.263_264insG	c.(262-264)GGCfs	p.G88fs	B4GALNT1_uc010sru.1_Intron|B4GALNT1_uc010srv.1_Frame_Shift_Ins_p.G88fs|B4GALNT1_uc001sph.2_Frame_Shift_Ins_p.G88fs|B4GALNT1_uc001spi.2_Frame_Shift_Ins_p.G88fs|B4GALNT1_uc010srw.1_Frame_Shift_Ins_p.G165fs	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	88	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			GGAGGGGGAGGCCCCCCCCACT	0.589													12	624	---	---	---	---					
ZFC3H1	196441	broad.mit.edu	37	12	72057256	72057258	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:72057256_72057258delGCT	uc001swo.2	-	1	492_494	c.133_135delAGC	c.(133-135)AGCdel	p.S45del	ZFC3H1_uc010sts.1_In_Frame_Del_p.S45del|ZFC3H1_uc001swp.2_In_Frame_Del_p.S45del|THAP2_uc001swq.2_5'Flank	NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	45	Ser-rich.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						GCCCGCCGCCGCTGCTGCTGCTG	0.631											OREG0021993	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	604	---	---	---	---					
EP400	57634	broad.mit.edu	37	12	132446446	132446448	+	In_Frame_Del	DEL	GAG	-	-	rs62635809	byFrequency	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr12:132446446_132446448delGAG	uc001ujn.2	+	1	1317_1319	c.1282_1284delGAG	c.(1282-1284)GAGdel	p.E437del	EP400_uc001ujl.2_In_Frame_Del_p.E437del|EP400_uc001ujm.2_In_Frame_Del_p.E437del|EP400_uc001ujj.1_In_Frame_Del_p.E437del|EP400_uc001ujk.2_In_Frame_Del_p.E437del	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	437	Poly-Glu.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CATTgaagaagaggaggaggagg	0.286													8	216	---	---	---	---					
LRCH1	23143	broad.mit.edu	37	13	47243183	47243186	+	Frame_Shift_Del	DEL	CCTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:47243183_47243186delCCTG	uc001vbj.2	+	3	707_710	c.471_474delCCTG	c.(469-474)GCCCTGfs	p.A157fs	LRCH1_uc010acp.2_Frame_Shift_Del_p.A157fs|LRCH1_uc001vbk.2_Frame_Shift_Del_p.A157fs|LRCH1_uc001vbl.3_Frame_Shift_Del_p.A157fs	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	157_158	LRR 3.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		AGCTGTCCGCCCTGCCTGCCTGCC	0.436													14	786	---	---	---	---					
FAM155A	728215	broad.mit.edu	37	13	108518338	108518338	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr13:108518338delC	uc001vql.2	-	1	1123	c.607delG	c.(607-609)GACfs	p.D203fs		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	203						integral to membrane	binding			skin(1)	1						TCCTGCCCGTCCCCCCCGGCC	0.607													18	857	---	---	---	---					
LRP10	26020	broad.mit.edu	37	14	23341527	23341529	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:23341527_23341529delCCT	uc001whd.2	+	1	568_570	c.15_17delCCT	c.(13-18)ACCCTC>ACC	p.L11del	LRP10_uc001whe.2_5'Flank	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	11					endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		TGTTGGCCACCCTCCTCCTCCTC	0.670													24	431	---	---	---	---					
ACIN1	22985	broad.mit.edu	37	14	23528607	23528609	+	In_Frame_Del	DEL	TCT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:23528607_23528609delTCT	uc001wit.3	-	19	4102_4104	c.3774_3776delAGA	c.(3772-3777)GAAGAG>GAG	p.1258_1259EE>E	CDH24_uc001wil.2_5'Flank|CDH24_uc010akf.2_5'Flank|CDH24_uc001win.3_5'Flank|ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_In_Frame_Del_p.500_501EE>E|ACIN1_uc001wiq.3_In_Frame_Del_p.500_501EE>E|ACIN1_uc001wir.3_In_Frame_Del_p.531_532EE>E|ACIN1_uc001wis.3_In_Frame_Del_p.939_940EE>E|ACIN1_uc010akg.2_In_Frame_Del_p.1245_1246EE>E	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	1258_1259	Arg/Asp/Glu/Lys-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		ctccttttgctcttcttcttctt	0.360													8	235	---	---	---	---					
ADCY4	196883	broad.mit.edu	37	14	24791301	24791301	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:24791301delG	uc001wov.2	-	20	2563	c.2557delC	c.(2557-2559)CAGfs	p.Q853fs	ADCY4_uc001wow.2_Frame_Shift_Del_p.Q853fs|ADCY4_uc010toh.1_Frame_Shift_Del_p.Q539fs|ADCY4_uc001wox.2_Frame_Shift_Del_p.Q853fs|ADCY4_uc001woy.2_Frame_Shift_Del_p.Q853fs	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	853	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		CCAATGAACTGGGGGGCCACG	0.587													7	800	---	---	---	---					
FSCB	84075	broad.mit.edu	37	14	44975663	44975663	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:44975663delC	uc001wvn.2	-	1	837	c.528delG	c.(526-528)AAGfs	p.K176fs		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	176						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		CTTCCTTTGACTTTGTAGAAG	0.403													8	780	---	---	---	---					
FANCM	57697	broad.mit.edu	37	14	45642288	45642289	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:45642288_45642289delCT	uc001wwd.3	+	13	2290_2291	c.2191_2192delCT	c.(2191-2193)CTCfs	p.L731fs	FANCM_uc010anf.2_Frame_Shift_Del_p.L705fs|FANCM_uc001wwe.3_Frame_Shift_Del_p.L267fs|FANCM_uc010ang.2_5'Flank	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	731					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						AATTCATCAACTCTCTCTCTCT	0.347								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				11	301	---	---	---	---					
SIPA1L1	26037	broad.mit.edu	37	14	72190482	72190484	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:72190482_72190484delTCC	uc001xms.2	+	16	4738_4740	c.4390_4392delTCC	c.(4390-4392)TCCdel	p.S1468del	SIPA1L1_uc001xmt.2_In_Frame_Del_p.S1447del|SIPA1L1_uc001xmu.2_In_Frame_Del_p.S1447del|SIPA1L1_uc001xmv.2_In_Frame_Del_p.S1468del|SIPA1L1_uc010ttm.1_In_Frame_Del_p.S922del|SIPA1L1_uc001xmw.2_In_Frame_Del_p.S233del	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1468	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ctcctcctcttcctcctcctcct	0.468													13	608	---	---	---	---					
FOXN3	1112	broad.mit.edu	37	14	89629149	89629151	+	In_Frame_Del	DEL	GAG	-	-	rs139532153		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:89629149_89629151delGAG	uc001xxo.3	-	7	1217_1219	c.1080_1082delCTC	c.(1078-1083)TCCTCA>TCA	p.360_361SS>S	FOXN3_uc001xxn.3_In_Frame_Del_p.338_339SS>S|FOXN3_uc010atk.2_In_Frame_Del_p.338_339SS>S	NM_001085471	NP_001078940	O00409	FOXN3_HUMAN	checkpoint suppressor 1 isoform 1	360_361					DNA damage checkpoint|embryo development|G2 phase of mitotic cell cycle|negative regulation of transcription, DNA-dependent|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein C-terminus binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(2)|ovary(1)	3						GTCGTCGGCTGAGGAGGAGGAGG	0.650													8	175	---	---	---	---					
DDX24	57062	broad.mit.edu	37	14	94545821	94545823	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:94545821_94545823delCCT	uc001ycj.2	-	2	365_367	c.266_268delAGG	c.(265-270)GAGGGA>GGA	p.E89del	DDX24_uc010twq.1_In_Frame_Del_p.E46del|DDX24_uc010twr.1_Intron|IFI27L1_uc001ycl.2_5'Flank|IFI27L1_uc001yck.2_5'Flank	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	89	Poly-Glu.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		CTAGACTTTCCCTCCTCCTCCTC	0.443													7	411	---	---	---	---					
C14orf49	161176	broad.mit.edu	37	14	95921888	95921890	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:95921888_95921890delCTC	uc001yei.3	-	5	976_978	c.961_963delGAG	c.(961-963)GAGdel	p.E321del	C14orf49_uc010avi.2_In_Frame_Del_p.E321del|C14orf49_uc001yej.1_In_Frame_Del_p.E321del	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	321	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CCCGCAGCCGCTCCTCCTCCTCC	0.616													8	549	---	---	---	---					
TNFAIP2	7127	broad.mit.edu	37	14	103599784	103599786	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:103599784_103599786delAGC	uc001ymm.1	+	9	1762_1764	c.1631_1633delAGC	c.(1630-1635)GAGCAG>GAG	p.Q548del	TNFAIP2_uc010awo.1_Intron|TNFAIP2_uc010txz.1_In_Frame_Del_p.Q217del|TNFAIP2_uc010tya.1_In_Frame_Del_p.Q31del	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	548					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			AAGACGGCCGAGCAGCAGCAGCA	0.626													10	387	---	---	---	---					
AKT1	207	broad.mit.edu	37	14	105242073	105242075	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:105242073_105242075delCTC	uc001ypk.2	-	5	903_905	c.349_351delGAG	c.(349-351)GAGdel	p.E117del	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_In_Frame_Del_p.E117del|AKT1_uc010axa.2_In_Frame_Del_p.E117del|AKT1_uc001ypm.2_In_Frame_Del_p.E117del|AKT1_uc001ypn.2_In_Frame_Del_p.E117del|AKT1_uc010tyk.1_In_Frame_Del_p.E55del	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	117					activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	GGAAGTCCATCTCCTCCTCCTCC	0.631		1	Mis		breast|colorectal|ovarian|NSCLC								8	409	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106691799	106691801	+	RNA	DEL	ACT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:106691799_106691801delACT	uc010tyt.1	-	754		c.20562_20564delAGT								Parts of antibodies, mostly variable regions.												0						AGTATATGTAACTACTACTACTA	0.517													13	968	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106993939	106993941	+	RNA	DEL	TAC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr14:106993939_106993941delTAC	uc010tyt.1	-	187		c.8506_8508delGTA								Parts of antibodies, mostly variable regions.												0						TAGTATATGGTACTACTACTACT	0.502													12	734	---	---	---	---					
C15orf24	56851	broad.mit.edu	37	15	34393991	34393993	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:34393991_34393993delAGC	uc001zhm.2	-	1	61_63	c.48_50delGCT	c.(46-51)CTGCTA>CTA	p.16_17LL>L	C15orf24_uc001zhn.2_5'UTR|PGBD4_uc001zho.2_5'Flank	NM_020154	NP_064539	Q9NPA0	CO024_HUMAN	chromosome 15 open reading frame 24 precursor	16_17						cytoplasm|integral to membrane	carbohydrate binding|carboxypeptidase activity|purine nucleotide binding				0		all_lung(180;1.76e-08)		all cancers(64;2.02e-17)|GBM - Glioblastoma multiforme(113;2.15e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		ATCCCCCGATAGCAGCAGCAGCA	0.665													23	845	---	---	---	---					
EIF2AK4	440275	broad.mit.edu	37	15	40282508	40282508	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:40282508delT	uc001zkm.1	+	16	2611	c.2561delT	c.(2560-2562)ATTfs	p.I854fs	EIF2AK4_uc010bbj.1_Frame_Shift_Del_p.I555fs|EIF2AK4_uc001zkn.1_5'Flank	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	854	Protein kinase 2.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		CCTGTCAACATTTTTTTGGAT	0.358													11	939	---	---	---	---					
C15orf52	388115	broad.mit.edu	37	15	40631782	40631782	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:40631782delC	uc001zlh.3	-	3	310	c.294delG	c.(292-294)GGGfs	p.G98fs	C15orf52_uc001zli.1_5'UTR|C15orf52_uc010ucn.1_5'Flank	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	98										large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		TCACAGCCATCCCCCCCTGCT	0.647													8	554	---	---	---	---					
TTBK2	146057	broad.mit.edu	37	15	43038313	43038313	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:43038313delT	uc001zqo.2	-	15	3854	c.3415delA	c.(3415-3417)ACAfs	p.T1139fs	TTBK2_uc010bcy.2_Frame_Shift_Del_p.T1070fs|uc001zqn.2_5'Flank	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1139					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		TTGGGTGGTGTTTTTGGATTG	0.542													7	618	---	---	---	---					
ARID3B	10620	broad.mit.edu	37	15	74888025	74888027	+	In_Frame_Del	DEL	CAG	-	-	rs141710149		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:74888025_74888027delCAG	uc002aye.2	+	9	1797_1799	c.1596_1598delCAG	c.(1594-1599)GCCAGC>GCC	p.S538del	ARID3B_uc002ayd.2_In_Frame_Del_p.S537del|CLK3_uc002ayf.1_5'Flank	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	538	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						gcagcagcgccagcagcagcagc	0.547													9	185	---	---	---	---					
CPLX3	594855	broad.mit.edu	37	15	75122558	75122560	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:75122558_75122560delGAG	uc002ayu.1	+	3	434_436	c.340_342delGAG	c.(340-342)GAGdel	p.E118del		NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	118						cell junction|synapse	syntaxin binding				0						GGAGGACACAGAGGAGGAGGAGG	0.616													9	426	---	---	---	---					
AKAP13	11214	broad.mit.edu	37	15	86198981	86198981	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr15:86198981delA	uc002blv.1	+	11	4878	c.4708delA	c.(4708-4710)AAAfs	p.K1570fs	AKAP13_uc002blt.1_Frame_Shift_Del_p.K1570fs|AKAP13_uc002blu.1_Frame_Shift_Del_p.K1570fs|AKAP13_uc010bnf.1_Frame_Shift_Del_p.K210fs|AKAP13_uc002blw.1_Frame_Shift_Del_p.K55fs|AKAP13_uc010bne.1_Frame_Shift_Del_p.K223fs	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1570					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GGGGCCTGGGAAAAATGCAGC	0.532													8	421	---	---	---	---					
WDR90	197335	broad.mit.edu	37	16	709106	709106	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:709106delC	uc002cii.1	+	25	3086	c.3032delC	c.(3031-3033)GCCfs	p.A1011fs	WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Frame_Shift_Del_p.A538fs|WDR90_uc002cil.1_RNA|WDR90_uc002cim.1_Frame_Shift_Del_p.A185fs|WDR90_uc002cin.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	1011										ovary(1)	1		Hepatocellular(780;0.0218)				TTCCCCGGGGCCCCCCCAGCC	0.657													8	575	---	---	---	---					
EME2	197342	broad.mit.edu	37	16	1824298	1824300	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:1824298_1824300delTGC	uc002cmq.1	+	3	422_424	c.422_424delTGC	c.(421-426)TTGCTG>TTG	p.141_142LL>L	NME3_uc002cmm.2_5'Flank|NME3_uc010brv.2_5'Flank|MRPS34_uc002cmn.2_5'Flank|MRPS34_uc002cmo.2_5'Flank|MRPS34_uc002cmp.1_5'Flank|EME2_uc010brw.1_In_Frame_Del_p.141_142LL>L	NM_001010865	NP_001010865	A4GXA9	EME2_HUMAN	essential meiotic endonuclease 1 homolog 2	141_142					DNA recombination|DNA repair	nucleus	DNA binding|endonuclease activity			lung(1)|central_nervous_system(1)|pancreas(1)	3						GAACAGGAATTGCTGCTGCTGCT	0.655								Direct_reversal_of_damage|Homologous_recombination					13	593	---	---	---	---					
C16orf79	283870	broad.mit.edu	37	16	2260586	2260588	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:2260586_2260588delCAG	uc010bsh.2	-	2	292_294	c.115_117delCTG	c.(115-117)CTGdel	p.L39del	C16orf79_uc002cpi.1_In_Frame_Del_p.L39del	NM_182563	NP_872369	Q6PL45	CP079_HUMAN	hypothetical protein LOC283870	39	Poly-Leu.|Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						CGGCcagcaccagcagcagcagc	0.562													8	157	---	---	---	---					
C16orf62	57020	broad.mit.edu	37	16	19580800	19580802	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:19580800_19580802delTCC	uc002dgn.1	+	3	184_186	c.172_174delTCC	c.(172-174)TCCdel	p.S64del	C16orf62_uc002dgo.1_In_Frame_Del_p.S64del|C16orf62_uc010vas.1_5'UTR|C16orf62_uc002dgm.1_In_Frame_Del_p.S64del	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	64	Ser-rich.					integral to membrane				ovary(1)	1						TTCTTCCACGTCCTCCTCCTCCT	0.562													13	346	---	---	---	---					
C16orf88	400506	broad.mit.edu	37	16	19722724	19722724	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:19722724delT	uc002dgq.2	-	3	972	c.957delA	c.(955-957)AAAfs	p.K319fs		NM_001012991	NP_001013009	Q1ED39	CP088_HUMAN	hypothetical protein LOC400506	319	Interaction with ZFP106 (By similarity).					nucleolus					0						CCATGTTGCCTTTTTTTTCCA	0.562													10	457	---	---	---	---					
IL4R	3566	broad.mit.edu	37	16	27373787	27373789	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:27373787_27373789delGAG	uc002don.2	+	11	1356_1358	c.1114_1116delGAG	c.(1114-1116)GAGdel	p.E376del	IL4R_uc002dop.3_In_Frame_Del_p.E361del|IL4R_uc010bxy.2_In_Frame_Del_p.E376del|IL4R_uc002doo.2_In_Frame_Del_p.E216del	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	376	Poly-Glu.|Cytoplasmic (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						GGTGGAGTGTGAGGAGGAGGAGG	0.591													7	268	---	---	---	---					
NLRC5	84166	broad.mit.edu	37	16	57059906	57059909	+	Frame_Shift_Del	DEL	CTGC	-	-	rs71689645		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:57059906_57059909delCTGC	uc002ekk.1	+	6	1276_1279	c.1051_1054delCTGC	c.(1051-1056)CTGCCTfs	p.L351fs	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Frame_Shift_Del_p.L156fs|NLRC5_uc002ekl.2_Frame_Shift_Del_p.L156fs|NLRC5_uc002ekm.2_Frame_Shift_Del_p.L156fs|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	351_352	NACHT.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				TCCAGGGAAGctgcctgcctgcct	0.539													7	344	---	---	---	---					
RANBP10	57610	broad.mit.edu	37	16	67763279	67763281	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr16:67763279_67763281delGAG	uc002eud.2	-	10	1370_1372	c.1254_1256delCTC	c.(1252-1257)TCCTCG>TCG	p.418_419SS>S	RANBP10_uc010ceo.2_In_Frame_Del_p.189_190SS>S|RANBP10_uc010vju.1_In_Frame_Del_p.362_363SS>S|RANBP10_uc010vjv.1_In_Frame_Del_p.301_302SS>S|RANBP10_uc010vjw.1_In_Frame_Del_p.79_80SS>S	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	418_419	Ser-rich.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		ggaagaggacgaggaggaggagg	0.414													8	155	---	---	---	---					
C17orf85	55421	broad.mit.edu	37	17	3721809	3721811	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:3721809_3721811delTCC	uc010ckl.1	-	10	1079_1081	c.1056_1058delGGA	c.(1054-1059)GAGGAA>GAA	p.352_353EE>E	C17orf85_uc002fwr.2_In_Frame_Del_p.62_63EE>E|C17orf85_uc002fwq.2_In_Frame_Del_p.72_73EE>E	NM_001114118	NP_001107590	Q53F19	CQ085_HUMAN	ELG protein isoform a	352_353	Glu-rich.						nucleotide binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (3;0.0725)		ctcttcctcttcctcctcctcct	0.379													14	430	---	---	---	---					
ZBTB4	57659	broad.mit.edu	37	17	7366349	7366351	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:7366349_7366351delTCC	uc002ghc.3	-	4	2200_2202	c.1950_1952delGGA	c.(1948-1953)GAGGAT>GAT	p.E650del	ZBTB4_uc002ghd.3_In_Frame_Del_p.E650del	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	650	Glu-rich.|Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		Ttcctcctcatcctcctcctcct	0.399													7	142	---	---	---	---					
TP53	7157	broad.mit.edu	37	17	7577058	7577059	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:7577058_7577059delCC	uc002gim.2	-	8	1073_1074	c.879_880delGG	c.(877-882)GGGGAGfs	p.G293fs	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Frame_Shift_Del_p.G293fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.G161fs|TP53_uc010cng.1_Frame_Shift_Del_p.G161fs|TP53_uc002gii.1_Frame_Shift_Del_p.G161fs|TP53_uc010cnh.1_Frame_Shift_Del_p.G293fs|TP53_uc010cni.1_Frame_Shift_Del_p.G293fs|TP53_uc002gij.2_Frame_Shift_Del_p.G293fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	293_294	Interaction with E4F1.|Interaction with HIPK1 (By similarity).		E -> A (in a sporadic cancer; somatic mutation).|E -> Q (in sporadic cancers; somatic mutation).|E -> K (in sporadic cancers; somatic mutation).|E -> V (in sporadic cancers; somatic mutation).|E -> G (in sporadic cancers; somatic mutation).|E -> D (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.E294*(35)|p.K291fs*48(8)|p.E294fs*51(8)|p.0?(7)|p.G293G(7)|p.G293R(4)|p.G293fs*13(3)|p.E294K(3)|p.E294fs*12(3)|p.?(2)|p.E294Q(2)|p.G293W(1)|p.G293V(1)|p.L265_K305del41(1)|p.T284_G293del10(1)|p.E294>*(1)|p.G293fs*1(1)|p.R290fs*50(1)|p.R290_P295>X(1)|p.E294fs*11(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TGGTGAGGCTCCCCTTTCTTGC	0.569		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			14	298	---	---	---	---					
SUPT6H	6830	broad.mit.edu	37	17	27027202	27027204	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:27027202_27027204delAGC	uc002hby.2	+	34	4663_4665	c.4573_4575delAGC	c.(4573-4575)AGCdel	p.S1528del	SUPT6H_uc010crt.2_In_Frame_Del_p.S1528del	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1528	Poly-Ser.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CATCACCCCTAGCAGCAGCAGCA	0.537													28	1312	---	---	---	---					
WIPF2	147179	broad.mit.edu	37	17	38421174	38421176	+	In_Frame_Del	DEL	CTC	-	-	rs151273872	byFrequency	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:38421174_38421176delCTC	uc002hug.1	+	5	986_988	c.746_748delCTC	c.(745-750)GCTCCT>GCT	p.P254del	WIPF2_uc002huh.1_In_Frame_Del_p.P104del|WIPF2_uc010cww.1_In_Frame_Del_p.P104del|WIPF2_uc002hui.1_In_Frame_Del_p.P254del|WIPF2_uc010cwx.1_Intron|WIPF2_uc010cwy.1_In_Frame_Del_p.P254del	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	254	Poly-Pro.					cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						CAGTCTCTGGCTCCTCCTCCTCC	0.596										HNSCC(43;0.11)			7	962	---	---	---	---					
IMP5	162540	broad.mit.edu	37	17	43923242	43923244	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:43923242_43923244delCTG	uc010wka.1	+	1	970_972	c.970_972delCTG	c.(970-972)CTGdel	p.L327del	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	327	Helical; (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GCCGCTGCCTCTGCTGCTGCTGG	0.650													7	332	---	---	---	---					
SCRN2	90507	broad.mit.edu	37	17	45916929	45916929	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:45916929delC	uc002imd.2	-	4	563	c.437delG	c.(436-438)GGCfs	p.G146fs	SCRN2_uc002imc.2_Frame_Shift_Del_p.G154fs|SCRN2_uc002imf.2_Frame_Shift_Del_p.G146fs|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	146					proteolysis		dipeptidase activity			ovary(1)	1						CAGGCAGTTGCCCCCCTGCCC	0.617													7	1176	---	---	---	---					
BZRAP1	9256	broad.mit.edu	37	17	56387404	56387406	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:56387404_56387406delTCC	uc002ivx.3	-	21	4684_4686	c.3813_3815delGGA	c.(3811-3816)GAGGAA>GAA	p.1271_1272EE>E	BZRAP1_uc010dcs.2_In_Frame_Del_p.1211_1212EE>E|BZRAP1_uc010wnt.1_In_Frame_Del_p.1271_1272EE>E	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1271_1272	Poly-Glu.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CAGctcctcttcctcctcctcct	0.468													16	337	---	---	---	---					
BPTF	2186	broad.mit.edu	37	17	65905759	65905759	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:65905759delA	uc002jgf.2	+	10	2935	c.2874delA	c.(2872-2874)CCAfs	p.P958fs	BPTF_uc002jge.2_Frame_Shift_Del_p.P1084fs	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1084					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CACGAAGTCCAAAAAAAATAA	0.308													8	108	---	---	---	---					
CDC42EP4	23580	broad.mit.edu	37	17	71281585	71281587	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:71281585_71281587delTCC	uc002jjn.2	-	2	1200_1202	c.1053_1055delGGA	c.(1051-1056)GAGGAT>GAT	p.E351del	CDC42EP4_uc002jjo.2_In_Frame_Del_p.E351del|CDC42EP4_uc002jjp.1_In_Frame_Del_p.E281del	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	351					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			ACGGATTTCATCCTCCTCCTCCT	0.640													8	607	---	---	---	---					
GPRC5C	55890	broad.mit.edu	37	17	72436565	72436567	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:72436565_72436567delTGC	uc002jks.2	+	1	689_691	c.650_652delTGC	c.(649-654)ATGCTG>ATG	p.L221del	GPRC5C_uc002jkp.2_In_Frame_Del_p.L266del|GPRC5C_uc002jkq.2_Intron|GPRC5C_uc002jkr.2_In_Frame_Del_p.L233del|GPRC5C_uc002jkt.2_In_Frame_Del_p.L221del|GPRC5C_uc002jku.2_5'Flank	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	221	Helical; Name=5; (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						ATCTACGTCATGCTGCTGCTGCT	0.665													8	207	---	---	---	---					
KIAA0195	9772	broad.mit.edu	37	17	73482037	73482039	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr17:73482037_73482039delTGC	uc002jnz.3	+	4	505_507	c.230_232delTGC	c.(229-234)GTGCTG>GTG	p.L81del	KIAA0195_uc010wsa.1_In_Frame_Del_p.L91del	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	81	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTACTGGCCGTGCTGCTGCTGCT	0.675													9	192	---	---	---	---					
ADNP2	22850	broad.mit.edu	37	18	77894260	77894261	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr18:77894260_77894261insC	uc002lnw.2	+	4	1419_1420	c.964_965insC	c.(964-966)TCCfs	p.S322fs		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	322	Pro-rich.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CCTCACTCATTCCCCCCCTGCT	0.644													9	455	---	---	---	---					
GIPC1	10755	broad.mit.edu	37	19	14593760	14593760	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:14593760delT	uc002myt.2	-	4	299	c.29delA	c.(28-30)AAGfs	p.K10fs	GIPC1_uc002myu.2_Frame_Shift_Del_p.K10fs|GIPC1_uc002myv.2_Intron|GIPC1_uc002myw.2_Intron|GIPC1_uc002myx.2_Frame_Shift_Del_p.K10fs|GIPC1_uc002myy.2_Intron	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	10					endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						AGGGGGCGCCTTTTTCCGCCG	0.697													7	157	---	---	---	---					
HAUS8	93323	broad.mit.edu	37	19	17160706	17160707	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:17160706_17160707delGA	uc002nfe.2	-	11	1320_1321	c.1209_1210delTC	c.(1207-1212)TCTCGTfs	p.S403fs	HAUS8_uc002nff.2_Frame_Shift_Del_p.S402fs|HAUS8_uc002nfg.1_Frame_Shift_Del_p.S341fs|HAUS8_uc002nfh.1_Frame_Shift_Del_p.S402fs	NM_033417	NP_219485	Q9BT25	HAUS8_HUMAN	sarcoma antigen NY-SAR-48 isoform a	403_404					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole					0						CTCCCTGAACGAGAGAGAGAGG	0.495													15	948	---	---	---	---					
ATP4A	495	broad.mit.edu	37	19	36054349	36054351	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:36054349_36054351delCTT	uc002oal.1	-	2	120_122	c.91_93delAAG	c.(91-93)AAGdel	p.K31del		NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	31	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	CGCCACCCGCCTTCTTCTTCTTG	0.601													10	1493	---	---	---	---					
CAPNS1	826	broad.mit.edu	37	19	36631941	36631943	+	In_Frame_Del	DEL	GGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:36631941_36631943delGGC	uc002odj.2	+	2	185_187	c.28_30delGGC	c.(28-30)GGCdel	p.G20del	CAPNS1_uc002odi.1_In_Frame_Del_p.G20del|CAPNS1_uc002odk.2_In_Frame_Del_p.G20del|CAPNS1_uc002odl.2_In_Frame_Del_p.G20del	NM_001749	NP_001740	P04632	CPNS1_HUMAN	calpain, small subunit 1	20	Gly-rich (hydrophobic).|Poly-Gly.				positive regulation of cell proliferation	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GTTCTTGAAGggcggcggcggcg	0.448													8	186	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	38948159	38948160	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:38948159_38948160delTG	uc002oit.2	+	17	1944_1945	c.1814_1815delTG	c.(1813-1815)CTGfs	p.L605fs	RYR1_uc002oiu.2_Frame_Shift_Del_p.L605fs	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	605	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTATGCTCCCTGTGTGTGTGTA	0.530													9	1167	---	---	---	---					
ZFP36	7538	broad.mit.edu	37	19	39898948	39898950	+	In_Frame_Del	DEL	CAC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:39898948_39898950delCAC	uc002olh.1	+	2	648_650	c.590_592delCAC	c.(589-594)TCACCA>TCA	p.P201del	ZFP36_uc010egn.1_In_Frame_Del_p.H73del	NM_003407	NP_003398	P26651	TTP_HUMAN	zinc finger protein 36, C3H type, homolog	201	P-P-P-P-G.				positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	cytosol|nucleus	AU-rich element binding|DNA binding|mRNA binding|protein binding|single-stranded RNA binding|zinc ion binding			pancreas(1)	1	all_cancers(60;6.54e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.53e-06)|Ovarian(47;0.0512)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CGCCGGACCTCACCACCACCACC	0.685													7	1250	---	---	---	---					
PRX	57716	broad.mit.edu	37	19	40900180	40900182	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:40900180_40900182delTCC	uc002onr.2	-	7	4346_4348	c.4077_4079delGGA	c.(4075-4080)GAGGAA>GAA	p.1359_1360EE>E	PRX_uc002onq.2_In_Frame_Del_p.1220_1221EE>E|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1359_1360	Poly-Glu.				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACTGCcctcttcctcctcctcct	0.606													8	91	---	---	---	---					
SFRS16	11129	broad.mit.edu	37	19	45556129	45556129	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:45556129delC	uc002pak.2	+	4	376	c.278delC	c.(277-279)ACCfs	p.T93fs	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_Intron|SFRS16_uc002pam.2_Frame_Shift_Del_p.T93fs|SFRS16_uc002pan.1_RNA	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	93					mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCCGACTACACCCCCCCTCTG	0.612													7	524	---	---	---	---					
DHX34	9704	broad.mit.edu	37	19	47883158	47883160	+	In_Frame_Del	DEL	GGA	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:47883158_47883160delGGA	uc010xyn.1	+	14	3239_3241	c.2898_2900delGGA	c.(2896-2901)CTGGAG>CTG	p.E971del	DHX34_uc010xyo.1_In_Frame_Del_p.E100del	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	971						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		AGCAGCAGCTGGAGGAGGAGGAG	0.660													10	220	---	---	---	---					
FLT3LG	2323	broad.mit.edu	37	19	49978960	49978962	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:49978960_49978962delCTG	uc010yau.1	+	3	136_138	c.46_48delCTG	c.(46-48)CTGdel	p.L20del	FLT3LG_uc002pnv.2_5'UTR|FLT3LG_uc002pnw.2_5'UTR|FLT3LG_uc002pnu.2_In_Frame_Del_p.L20del|FLT3LG_uc002pnx.2_In_Frame_Del_p.L20del|FLT3LG_uc010yav.1_5'UTR	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	20					positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CTATCTCCTCCTGCTGCTGCTGC	0.621													16	522	---	---	---	---					
SYT3	84258	broad.mit.edu	37	19	51135694	51135696	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:51135694_51135696delCTG	uc002pst.2	-	2	1155_1157	c.521_523delCAG	c.(520-525)GCAGTG>GTG	p.A174del	SYT3_uc002psv.2_In_Frame_Del_p.A174del|SYT3_uc010ycd.1_In_Frame_Del_p.A174del	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	174	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		CCAGCGGCCACTGCTGCTGCTGC	0.655													8	208	---	---	---	---					
TMC4	147798	broad.mit.edu	37	19	54675747	54675749	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr19:54675747_54675749delTCC	uc010erf.2	-	2	333_335	c.201_203delGGA	c.(199-204)GAGGAT>GAT	p.E67del	TMC4_uc002qdo.2_In_Frame_Del_p.E61del	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	67	Poly-Glu.|Extracellular (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCTTCCTCCATCCTCCTCCTCCT	0.645													28	510	---	---	---	---					
ASXL2	55252	broad.mit.edu	37	2	26022304	26022306	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:26022304_26022306delCTG	uc002rgs.2	-	4	572_574	c.351_353delCAG	c.(349-354)AGCAGT>AGT	p.117_118SS>S		NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	117_118	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCACCATCACTGCTGCTGCTGC	0.463													20	665	---	---	---	---					
SRBD1	55133	broad.mit.edu	37	2	45826821	45826821	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:45826821delT	uc002rus.2	-	4	491	c.415delA	c.(415-417)ACCfs	p.T139fs		NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	139					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			GCTTTGCTGGTTTCTTCTTCA	0.453													26	917	---	---	---	---					
MOGS	7841	broad.mit.edu	37	2	74690035	74690035	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:74690035delG	uc010ffj.2	-	4	1044	c.881delC	c.(880-882)CCTfs	p.P294fs	MOGS_uc010ffh.2_Frame_Shift_Del_p.P19fs|MOGS_uc010yrt.1_Frame_Shift_Del_p.P175fs|MOGS_uc010ffi.2_Frame_Shift_Del_p.P188fs|MOGS_uc010yru.1_3'UTR	NM_006302	NP_006293	Q13724	MOGS_HUMAN	mannosyl-oligosaccharide glucosidase isoform 1	294	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|membrane fraction	mannosyl-oligosaccharide glucosidase activity				0						GTAGCGTTCAGGGGGGGCCCC	0.587													8	960	---	---	---	---					
WDR33	55339	broad.mit.edu	37	2	128471200	128471200	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:128471200delG	uc002tpg.1	-	18	3448	c.3265delC	c.(3265-3267)CGGfs	p.R1089fs		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	1089					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		TCGGGATCCCGGGGGAAACGT	0.617													9	1029	---	---	---	---					
DNAH7	56171	broad.mit.edu	37	2	196788374	196788374	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:196788374delT	uc002utj.3	-	23	3871	c.3770delA	c.(3769-3771)AATfs	p.N1257fs		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1257	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATCGCTAATATTTTTTTTTAC	0.418													14	275	---	---	---	---					
ALPI	248	broad.mit.edu	37	2	233320926	233320928	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:233320926_233320928delTGC	uc002vst.3	+	1	94_96	c.17_19delTGC	c.(16-21)GTGCTG>GTG	p.L10del	ALPI_uc002vsu.3_5'UTR	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	10					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GGGCCCTGGGTGCTGCTGCTGCT	0.660													8	263	---	---	---	---					
GAL3ST2	64090	broad.mit.edu	37	2	242738494	242738496	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr2:242738494_242738496delTCC	uc002wcj.1	+	2	175_177	c.44_46delTCC	c.(43-48)ATCCTC>ATC	p.L20del		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	20	Helical; Signal-anchor for type II membrane protein; (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TTCCGGGTCATCCTCCTCCTCCT	0.631													11	614	---	---	---	---					
SLC4A11	83959	broad.mit.edu	37	20	3218308	3218308	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:3218308delC	uc002wig.2	-	1	66	c.18delG	c.(16-18)GGGfs	p.G6fs	SLC4A11_uc010zqe.1_Intron|SLC4A11_uc002wih.2_Intron|SLC4A11_uc010zqf.1_Intron	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	6	Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						TGTCTCCCCGCCCCCCGACCT	0.627													7	842	---	---	---	---					
GZF1	64412	broad.mit.edu	37	20	23345921	23345923	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:23345921_23345923delGAG	uc010gdb.2	+	3	1075_1077	c.901_903delGAG	c.(901-903)GAGdel	p.E306del	GZF1_uc002wsy.2_In_Frame_Del_p.E306del|GZF1_uc010zsq.1_Intron|GZF1_uc010zsr.1_Intron|GZF1_uc002wsz.2_In_Frame_Del_p.E306del	NM_022482	NP_071927	Q9H116	GZF1_HUMAN	GDNF-inducible zinc finger protein 1	306					transcription, DNA-dependent	nucleolus|nucleoplasm	sequence-specific DNA binding|zinc ion binding			kidney(1)	1	Lung NSC(19;0.0605)|Colorectal(13;0.0993)|all_lung(19;0.135)					ggaggaggaagaggaggaggagg	0.384													19	255	---	---	---	---					
NFS1	9054	broad.mit.edu	37	20	34262999	34262999	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:34262999delC	uc002xdw.1	-	8	980	c.916delG	c.(916-918)GCTfs	p.A306fs	CPNE1_uc002xdn.1_5'Flank|CPNE1_uc002xdo.1_5'Flank|CPNE1_uc002xdp.1_5'Flank|NFS1_uc002xdt.1_Frame_Shift_Del_p.A246fs|NFS1_uc002xdu.1_Frame_Shift_Del_p.A246fs|NFS1_uc002xdv.1_Intron|NFS1_uc010zvk.1_Frame_Shift_Del_p.A104fs|NFS1_uc010zvl.1_Frame_Shift_Del_p.A255fs	NM_021100	NP_066923	Q9Y697	NFS1_HUMAN	NFS1 nitrogen fixation 1 precursor	306					cysteine metabolic process|iron incorporation into metallo-sulfur cluster|Mo-molybdopterin cofactor biosynthetic process|protein complex assembly|water-soluble vitamin metabolic process	cytosol|mitochondrial matrix|nucleus	cysteine desulfurase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.0886)		L-Alanine(DB00160)|L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	TCACACGCAGCCCCCAGCCCC	0.642													8	520	---	---	---	---					
KCNB1	3745	broad.mit.edu	37	20	47989771	47989772	+	Frame_Shift_Ins	INS	-	G	G			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr20:47989771_47989772insG	uc002xur.1	-	2	2489_2490	c.2325_2326insC	c.(2323-2328)CCCAAAfs	p.P775fs	KCNB1_uc002xus.1_Frame_Shift_Ins_p.P775fs	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	775_776	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GGGAGGCTTTTGGGGGGGCTGG	0.545													11	2020	---	---	---	---					
PTTG1IP	754	broad.mit.edu	37	21	46276194	46276196	+	In_Frame_Del	DEL	GCA	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr21:46276194_46276196delGCA	uc002zgb.1	-	4	571_573	c.361_363delTGC	c.(361-363)TGCdel	p.C121del	PTTG1IP_uc011afj.1_RNA|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330	P53801	PTTG_HUMAN	pituitary tumor-transforming gene 1	121	Poly-Cys.|Cytoplasmic (Potential).				protein import into nucleus	cytoplasm|integral to membrane|nucleus				ovary(1)	1				Colorectal(79;0.0659)		TCTTCCTCCTGCAGCAGCAGCAG	0.616													17	370	---	---	---	---					
CLASP2	23122	broad.mit.edu	37	3	33602361	33602361	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:33602361delT	uc003cfu.2	-	27	3223	c.2869delA	c.(2869-2871)ATGfs	p.M957fs	CLASP2_uc003cfs.2_Frame_Shift_Del_p.M164fs|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Frame_Shift_Del_p.M557fs	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	966										ovary(3)|central_nervous_system(1)	4						TCAGCACCCATTTTTTTTAGT	0.343													13	457	---	---	---	---					
ITIH4	3700	broad.mit.edu	37	3	52847474	52847474	+	Frame_Shift_Del	DEL	G	-	-	rs140372968	byFrequency	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:52847474delG	uc003dfz.2	-	24	2792	c.2756delC	c.(2755-2757)CCGfs	p.P919fs	uc003dfw.1_5'Flank|ITIH4_uc011bel.1_Frame_Shift_Del_p.P633fs|ITIH4_uc003dfy.2_Frame_Shift_Del_p.P714fs|ITIH4_uc011bem.1_Frame_Shift_Del_p.P924fs|ITIH4_uc011ben.1_Frame_Shift_Del_p.P889fs	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	919					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		CTCCACTCCCGGGGGCCCCTC	0.582													8	696	---	---	---	---					
FOXP1	27086	broad.mit.edu	37	3	71247357	71247359	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:71247357_71247359delTGC	uc003dol.2	-	2	497_499	c.174_176delGCA	c.(172-177)CAGCAA>CAA	p.58_59QQ>Q	FOXP1_uc003dom.2_In_Frame_Del_p.58_59QQ>Q|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_In_Frame_Del_p.58_59QQ>Q|FOXP1_uc003dop.2_In_Frame_Del_p.58_59QQ>Q|FOXP1_uc003doq.1_In_Frame_Del_p.58_59QQ>Q|FOXP1_uc003dos.2_In_Frame_Del_p.58_59QQ>Q	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	58_59	Gln-rich.	Breakpoint for translocation to form PAX5-FOXP1.			cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		CAGTACCTGTTGCTGCTGCTGCT	0.586			T	PAX5	ALL								17	549	---	---	---	---					
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:100148586_100148588delGAT	uc003dtx.3	+	2	1293_1295	c.13_15delGAT	c.(13-15)GATdel	p.D10del	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	10	Poly-Asp.										0						GGAGCACAAAGATGATGATGATG	0.507													13	1018	---	---	---	---					
RG9MTD1	54931	broad.mit.edu	37	3	101284009	101284009	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:101284009delA	uc003duz.2	+	2	532	c.384delA	c.(382-384)GCAfs	p.A128fs		NM_017819	NP_060289	Q7L0Y3	MRRP1_HUMAN	RNA (guanine-9-) methyltransferase domain	128					tRNA processing	mitochondrion	methyltransferase activity|protein binding			ovary(1)	1						CTAACACAGCaaaaaaaaaat	0.343													11	141	---	---	---	---					
IL12A	3592	broad.mit.edu	37	3	159713299	159713299	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:159713299delC	uc003fcx.2	+	7	930	c.715delC	c.(715-717)CGGfs	p.R239fs	uc003fcw.1_Intron	NM_000882	NP_000873	P29459	IL12A_HUMAN	interleukin 12A precursor	205					cell cycle arrest|cell migration|defense response to Gram-positive bacterium|immune response|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of cell adhesion|positive regulation of interferon-gamma production|positive regulation of natural killer cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of NK T cell activation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of tyrosine phosphorylation of Stat4 protein|response to lipopolysaccharide|response to UV-B|response to virus	interleukin-12 complex	cytokine activity|growth factor activity|interleukin-12 receptor binding|interleukin-27 binding|protein heterodimerization activity				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			TTTCAGAATTCGGGCAGTGAC	0.383													7	556	---	---	---	---					
FXR1	8087	broad.mit.edu	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:180666228delA	uc003fkq.2	+	5	386	c.364delA	c.(364-366)AAAfs	p.K122fs	FXR1_uc003fkp.2_Frame_Shift_Del_p.K37fs|FXR1_uc003fkr.2_Frame_Shift_Del_p.K122fs|FXR1_uc011bqj.1_Frame_Shift_Del_p.K36fs|FXR1_uc003fks.2_Frame_Shift_Del_p.K36fs|FXR1_uc011bqk.1_Frame_Shift_Del_p.K73fs|FXR1_uc011bql.1_Frame_Shift_Del_p.K109fs	NM_005087	NP_005078	P51114	FXR1_HUMAN	fragile X mental retardation-related protein 1	122					apoptosis|cell differentiation|muscle organ development	nucleolus|polysome				breast(1)	1	all_cancers(143;6.07e-14)|Ovarian(172;0.0212)		Epithelial(37;3.05e-35)|OV - Ovarian serous cystadenocarcinoma(80;2.4e-22)			TAAAACTGTCAAAAAAAATAC	0.333													12	239	---	---	---	---					
TNK2	10188	broad.mit.edu	37	3	195595229	195595229	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr3:195595229delG	uc003fvu.1	-	12	2438	c.1895delC	c.(1894-1896)CCGfs	p.P632fs	TNK2_uc003fvq.1_Frame_Shift_Del_p.P39fs|TNK2_uc003fvr.1_Frame_Shift_Del_p.P157fs|TNK2_uc003fvs.1_Frame_Shift_Del_p.P664fs|TNK2_uc003fvt.1_Frame_Shift_Del_p.P710fs|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_3'UTR	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	632	Required for interaction with SRC.|Required for interaction with NEDD4 (By similarity).|Pro-rich.			Missing (in Ref. 4; AAH08884).	positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	ATAGGCGGGCGGGGGGGGCAG	0.726													10	517	---	---	---	---					
TMEM175	84286	broad.mit.edu	37	4	946206	946207	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:946206_946207delTG	uc003gbq.2	+	7	528_529	c.430_431delTG	c.(430-432)TGTfs	p.C144fs	TMEM175_uc010ibl.1_Frame_Shift_Del_p.C144fs|TMEM175_uc003gbp.1_Frame_Shift_Del_p.C62fs|TMEM175_uc003gbr.2_Frame_Shift_Del_p.C62fs|TMEM175_uc003gbu.2_Frame_Shift_Del_p.C62fs|TMEM175_uc003gbs.2_Frame_Shift_Del_p.C27fs|TMEM175_uc003gbt.2_Frame_Shift_Del_p.C27fs|TMEM175_uc003gbv.2_Frame_Shift_Del_p.C27fs|TMEM175_uc010ibm.2_Frame_Shift_Del_p.C15fs	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	144	Helical; (Potential).					integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			CTTCTTGTTCTGTGTGTGTGTG	0.406													12	1009	---	---	---	---					
PRDM8	56978	broad.mit.edu	37	4	81123250	81123252	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:81123250_81123252delCAG	uc010ijo.2	+	8	1473_1475	c.634_636delCAG	c.(634-636)CAGdel	p.Q217del	PRDM8_uc003hmb.3_In_Frame_Del_p.Q217del|PRDM8_uc003hmc.3_In_Frame_Del_p.Q217del	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	217	Gly-rich.|Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						tggcaaagaccagcagcagcagc	0.384											OREG0016246	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	173	---	---	---	---					
MMRN1	22915	broad.mit.edu	37	4	90844391	90844393	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:90844391_90844393delAGC	uc003hst.2	+	4	994_996	c.923_925delAGC	c.(922-927)GAGCAG>GAG	p.Q313del	MMRN1_uc010iku.2_In_Frame_Del_p.Q279del|MMRN1_uc011cds.1_In_Frame_Del_p.Q55del	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	313	Poly-Gln.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GGAGTAGCTGAGCAGCAGCAGCA	0.448													10	1452	---	---	---	---					
ADAD1	132612	broad.mit.edu	37	4	123302211	123302211	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:123302211delA	uc003ieo.2	+	4	469	c.237delA	c.(235-237)CCAfs	p.P79fs	ADAD1_uc003iep.2_Frame_Shift_Del_p.P79fs|ADAD1_uc003ieq.2_Frame_Shift_Del_p.P61fs	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	79					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TCCTTCCTCCAAAAAAAATAC	0.358													9	206	---	---	---	---					
HMGB2	3148	broad.mit.edu	37	4	174253277	174253279	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr4:174253277_174253279delTCC	uc011ckc.1	-	4	702_704	c.582_584delGGA	c.(580-585)GAGGAA>GAA	p.194_195EE>E	HMGB2_uc003ita.3_In_Frame_Del_p.194_195EE>E|HMGB2_uc003itb.2_In_Frame_Del_p.194_195EE>E|HMGB2_uc003itc.2_3'UTR	NM_001130689	NP_001124161	P26583	HMGB2_HUMAN	high-mobility group box 2	194_195	Asp/Glu-rich (acidic).				base-excision repair, DNA ligation|cell chemotaxis|cellular response to lipopolysaccharide|DNA fragmentation involved in apoptotic nuclear change|DNA topological change|negative regulation of transcription, DNA-dependent|nucleosome assembly|phosphatidylinositol-mediated signaling|positive regulation of DNA binding|positive regulation of endothelial cell proliferation|positive regulation of erythrocyte differentiation|positive regulation of megakaryocyte differentiation|positive regulation of nuclease activity|positive regulation of transcription from RNA polymerase II promoter|V(D)J recombination	condensed chromosome|extracellular space|nucleolus|nucleoplasm|perinuclear region of cytoplasm|protein complex	chemoattractant activity|damaged DNA binding|DNA bending activity|double-stranded DNA binding|RAGE receptor binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding|transcription regulatory region DNA binding				0		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;9.58e-18)|Epithelial(43;3.75e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.24e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		atcttcttcttcctcctcctcct	0.286													9	277	---	---	---	---					
PAPD7	11044	broad.mit.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:6755013_6755014delAC	uc003jdx.1	+	13	1713_1714	c.1584_1585delAC	c.(1582-1587)AAACACfs	p.K528fs	PAPD7_uc011cmn.1_Frame_Shift_Del_p.K518fs|PAPD7_uc010itl.1_Frame_Shift_Del_p.K348fs	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	528_529					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						GGAGGAAAAAACACACACACAC	0.653													8	256	---	---	---	---					
DNAH5	1767	broad.mit.edu	37	5	13871038	13871038	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:13871038delT	uc003jfd.2	-	24	3714	c.3672delA	c.(3670-3672)AAAfs	p.K1224fs		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1224	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CACTCCGGTATTTTTTGTTAC	0.398									Kartagener_syndrome				7	401	---	---	---	---					
ZFR	51663	broad.mit.edu	37	5	32404161	32404161	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:32404161delT	uc003jhr.1	-	7	1154	c.1074delA	c.(1072-1074)AAAfs	p.K358fs		NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	358					multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		ATGCAGCTTCTTTTTTTTTAT	0.348													9	351	---	---	---	---					
SLC12A2	6558	broad.mit.edu	37	5	127420207	127420209	+	In_Frame_Del	DEL	CGG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:127420207_127420209delCGG	uc003kus.2	+	1	725_727	c.561_563delCGG	c.(559-564)TCCGGC>TCC	p.G192del	FLJ33630_uc003kun.2_5'Flank|FLJ33630_uc003kuo.2_5'Flank|FLJ33630_uc003kup.1_5'Flank|FLJ33630_uc003kuq.1_5'Flank|FLJ33630_uc003kur.2_5'Flank|SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_In_Frame_Del_p.G192del	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	192	Poly-Gly.|Cytoplasmic (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GCCTGCACTCCGGCGGCGGCGGC	0.650													9	176	---	---	---	---					
PCDHB2	56133	broad.mit.edu	37	5	140474590	140474590	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:140474590delA	uc003lil.2	+	1	354	c.216delA	c.(214-216)GGAfs	p.G72fs	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	72	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTTCCAAAGGAAAAAAAATGC	0.522													7	372	---	---	---	---					
HAVCR2	84868	broad.mit.edu	37	5	156535948	156535950	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:156535948_156535950delAGC	uc003lwk.1	-	1	189_191	c.45_47delGCT	c.(43-48)CTGCTA>CTA	p.15_16LL>L	HAVCR2_uc003lwl.2_In_Frame_Del_p.15_16LL>L	NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	15_16						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGTAAGTAGTAGCAGCAGCAGCA	0.291													7	259	---	---	---	---					
TRIM52	84851	broad.mit.edu	37	5	180687612	180687614	+	In_Frame_Del	DEL	TCC	-	-	rs146030758		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr5:180687612_180687614delTCC	uc003mnp.2	-	1	506_508	c.201_203delGGA	c.(199-204)GAGGAC>GAC	p.E67del	uc003mnq.2_5'Flank	NM_032765	NP_116154	Q96A61	TRI52_HUMAN	tripartite motif-containing 52	67	Glu-rich.					intracellular	zinc ion binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.0106)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0588)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.232)		CGCTtcctcgtcctcctcctcct	0.404													8	373	---	---	---	---					
HIST1H1C	3006	broad.mit.edu	37	6	26056292	26056292	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:26056292delT	uc003nfw.2	-	1	408	c.365delA	c.(364-366)AAGfs	p.K122fs		NM_005319	NP_005310	P16403	H12_HUMAN	histone cluster 1, H1c	122					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)|skin(2)	5						TCCGCCCGCCTTTTTAACCTT	0.572													7	458	---	---	---	---					
CDSN	1041	broad.mit.edu	37	6	31084620	31084622	+	In_Frame_Del	DEL	CCA	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:31084620_31084622delCCA	uc003nsm.1	-	2	797_799	c.770_772delTGG	c.(769-774)GTGGAC>GAC	p.V257del	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	257	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						CCGTGCTGGTCCACCACCACCAC	0.635													10	243	---	---	---	---					
CCHCR1	54535	broad.mit.edu	37	6	31110764	31110766	+	In_Frame_Del	DEL	CTG	-	-	rs140560656		TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:31110764_31110766delCTG	uc003nsr.3	-	17	2321_2323	c.2198_2200delCAG	c.(2197-2202)GCAGTG>GTG	p.A733del	CCHCR1_uc011dne.1_In_Frame_Del_p.A719del|CCHCR1_uc003nsq.3_In_Frame_Del_p.A786del|CCHCR1_uc003nsp.3_In_Frame_Del_p.A822del	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	733			A -> V.		cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						CTGGTGGGCACTGCTGCTGCTAC	0.532													7	1901	---	---	---	---					
DAXX	1616	broad.mit.edu	37	6	33287898	33287900	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:33287898_33287900delTCC	uc003oec.2	-	5	1557_1559	c.1353_1355delGGA	c.(1351-1356)GAGGAA>GAA	p.451_452EE>E	ZBTB22_uc003oeb.2_5'Flank|ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_In_Frame_Del_p.376_377EE>E|DAXX_uc011dre.1_In_Frame_Del_p.463_464EE>E|DAXX_uc003oed.2_In_Frame_Del_p.451_452EE>E	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	451_452	Asp/Glu-rich (acidic).|Potential.|Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						ctcttcttcttcctcctcctcct	0.251			Mis|F|N		Pancreatic neuroendocrine tumors								7	137	---	---	---	---					
TREML2	79865	broad.mit.edu	37	6	41168714	41168716	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:41168714_41168716delCAG	uc010jxm.1	-	1	210_212	c.31_33delCTG	c.(31-33)CTGdel	p.L11del		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	11					T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCTGTGGCCACAGCAGCAGCAGC	0.631													13	198	---	---	---	---					
FOXP4	116113	broad.mit.edu	37	6	41557781	41557781	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:41557781delC	uc003oql.2	+	11	1688	c.1230delC	c.(1228-1230)CACfs	p.H410fs	FOXP4_uc003oqm.2_Frame_Shift_Del_p.H408fs|FOXP4_uc003oqn.2_Frame_Shift_Del_p.H397fs	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	410					embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					GTCTCGTGCACCCCCCGACCT	0.682													7	297	---	---	---	---					
RUNX2	860	broad.mit.edu	37	6	45390467	45390469	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:45390467_45390469delCAG	uc011dvx.1	+	3	406_408	c.196_198delCAG	c.(196-198)CAGdel	p.Q71del	RUNX2_uc011dvy.1_In_Frame_Del_p.Q71del|RUNX2_uc003oxt.2_In_Frame_Del_p.Q57del	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	71	Poly-Gln.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						gcagcagcaacagcagcagcagc	0.276													7	91	---	---	---	---					
TTK	7272	broad.mit.edu	37	6	80751896	80751897	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr6:80751896_80751897insA	uc003pjc.2	+	22	2625_2626	c.2551_2552insA	c.(2551-2553)GAAfs	p.E851fs	TTK_uc003pjb.3_Frame_Shift_Ins_p.E850fs	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	851					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R838fs*4(3)		ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		CAAGACTTTTGAAAAAAAAAGG	0.302													17	228	---	---	---	---					
GLCCI1	113263	broad.mit.edu	37	7	8126097	8126099	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:8126097_8126099delCAG	uc003srk.2	+	8	2132_2134	c.1573_1575delCAG	c.(1573-1575)CAGdel	p.Q528del		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	528	Poly-Gln.										0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		GCAGCCATCCCAGCAGCAGCAGC	0.562													8	1220	---	---	---	---					
GARS	2617	broad.mit.edu	37	7	30634583	30634585	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:30634583_30634585delCTG	uc003tbm.2	+	1	403_405	c.46_48delCTG	c.(46-48)CTGdel	p.L20del	uc003tbj.2_5'Flank|uc003tbl.3_5'Flank|uc010kvv.2_5'Flank	NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	20					cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	TCGCGCCGCTCTGCTGCTGCTGC	0.749													8	123	---	---	---	---					
RSBN1L	222194	broad.mit.edu	37	7	77326220	77326222	+	In_Frame_Del	DEL	CCG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:77326220_77326222delCCG	uc010ldt.1	+	1	478_480	c.434_436delCCG	c.(433-438)CCCGCC>CCC	p.A151del	RSBN1L_uc003ugm.2_5'Flank|uc003ugj.1_RNA	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	151	Poly-Ala.					nucleus				ovary(1)	1						CTCCTCCTGCCCGCCGCCGCCGC	0.685													11	194	---	---	---	---					
PTCD1	26024	broad.mit.edu	37	7	99032605	99032607	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:99032605_99032607delCTC	uc003uqh.2	-	2	390_392	c.259_261delGAG	c.(259-261)GAGdel	p.E87del	PTCD1_uc011kiw.1_In_Frame_Del_p.E136del	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	87										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			TCCCAAAACTCTCCTCCTCCTCC	0.606													9	510	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100284335	100284337	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:100284335_100284337delCCT	uc003uwg.1	-	7	1638_1640	c.629_631delAGG	c.(628-633)GAGGGC>GGC	p.E210del		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	210	Poly-Glu.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTCCAGCTGCcctcctcctcctc	0.616													10	201	---	---	---	---					
CBLL1	79872	broad.mit.edu	37	7	107393940	107393940	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:107393940delT	uc003veq.2	+	3	596	c.266delT	c.(265-267)CTTfs	p.L89fs	CBLL1_uc011kme.1_5'UTR|CBLL1_uc011kmf.1_Frame_Shift_Del_p.L88fs	NM_024814	NP_079090	Q75N03	HAKAI_HUMAN	Cas-Br-M (murine) ecotropic retroviral	89					cell-cell adhesion|negative regulation of cell adhesion|positive regulation of cell migration|positive regulation of endocytosis		protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|skin(2)|lung(1)	5						CCTGGACACCTTTTTTGGGAC	0.254													7	247	---	---	---	---					
WASL	8976	broad.mit.edu	37	7	123332839	123332841	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:123332839_123332841delAGG	uc003vkz.2	-	9	1235_1237	c.907_909delCCT	c.(907-909)CCTdel	p.P303del		NM_003941	NP_003932	O00401	WASL_HUMAN	Wiskott-Aldrich syndrome gene-like protein	303	Pro-rich.				actin polymerization or depolymerization|axon guidance|cellular component movement|nitric oxide metabolic process|protein complex assembly|regulation of nitric-oxide synthase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|cytosol|nucleolus|plasma membrane	actin binding|small GTPase regulator activity				0						TTCCCCTagcaggaggaggagga	0.443													13	347	---	---	---	---					
ZNF777	27153	broad.mit.edu	37	7	149152825	149152825	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr7:149152825delG	uc003wfv.2	-	2	452	c.289delC	c.(289-291)CTGfs	p.L97fs		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	97					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGGGAAGCCAGGGGGCCCTGG	0.607													7	690	---	---	---	---					
ATAD2	29028	broad.mit.edu	37	8	124368685	124368685	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:124368685delA	uc003yqh.3	-	13	1698	c.1590delT	c.(1588-1590)TTTfs	p.F530fs	ATAD2_uc011lii.1_Frame_Shift_Del_p.F321fs|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Frame_Shift_Del_p.F530fs	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	530					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CAATTTCGTCAAAAAAAATAA	0.413													8	184	---	---	---	---					
ZC3H3	23144	broad.mit.edu	37	8	144522387	144522389	+	In_Frame_Del	DEL	GAG	-	-	rs2272754	byFrequency	TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr8:144522387_144522389delGAG	uc003yyd.2	-	11	2666_2668	c.2637_2639delCTC	c.(2635-2640)TCCTCA>TCA	p.879_880SS>S		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	879_880	Poly-Ser.				mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding	p.S879F(1)		skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			Gggaggggatgaggaggaggagg	0.552													8	86	---	---	---	---					
DAB2IP	153090	broad.mit.edu	37	9	124522389	124522391	+	In_Frame_Del	DEL	AAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:124522389_124522391delAAG	uc004bln.2	+	6	826_828	c.757_759delAAG	c.(757-759)AAGdel	p.K257del	DAB2IP_uc004blo.2_In_Frame_Del_p.K161del	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	285	C2.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						GGAGACCGACAAGAAGAAGAAGA	0.601													16	378	---	---	---	---					
GTF3C5	9328	broad.mit.edu	37	9	135933278	135933280	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chr9:135933278_135933280delGAG	uc004cci.3	+	11	1808_1810	c.1471_1473delGAG	c.(1471-1473)GAGdel	p.E499del	GTF3C5_uc004ccj.3_In_Frame_Del_p.E506del	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	499	Glu-rich.|Poly-Glu.					transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		cgaggaggatgaggaggaggagg	0.448													7	265	---	---	---	---					
TXLNG	55787	broad.mit.edu	37	X	16850849	16850850	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:16850849_16850850delAG	uc004cxq.1	+	6	1019_1020	c.968_969delAG	c.(967-969)CAGfs	p.Q323fs	TXLNG_uc010ney.1_Frame_Shift_Del_p.Q191fs|TXLNG_uc004cxr.1_5'Flank	NM_018360	NP_060830	Q9NUQ3	TXLNG_HUMAN	gamma-taxilin	323	Potential.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane				lung(1)	1						GAAAAACATCAGAGAGAGAGAG	0.386													7	146	---	---	---	---					
RAI2	10742	broad.mit.edu	37	X	17818550	17818550	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:17818550delA	uc004cyf.2	-	3	2151	c.1581delT	c.(1579-1581)TTTfs	p.F527fs	RAI2_uc004cyg.2_Frame_Shift_Del_p.F527fs|RAI2_uc010nfa.2_Frame_Shift_Del_p.F527fs|RAI2_uc004cyh.3_Frame_Shift_Del_p.F527fs|RAI2_uc011miy.1_Frame_Shift_Del_p.F477fs	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	527					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					ACTTTCTTGGAAAAAAGGTGG	0.333													9	780	---	---	---	---					
CNKSR2	22866	broad.mit.edu	37	X	21627678	21627680	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:21627678_21627680delGAG	uc004czx.1	+	20	2671_2673	c.2635_2637delGAG	c.(2635-2637)GAGdel	p.E886del	CNKSR2_uc004czw.2_In_Frame_Del_p.E886del|CNKSR2_uc011mjn.1_In_Frame_Del_p.E837del|CNKSR2_uc011mjo.1_In_Frame_Del_p.E856del|CNKSR2_uc004czy.2_In_Frame_Del_p.E478del	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	886	Potential.|Poly-Glu.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						ggtggaggaagaggaggaggagg	0.379													8	110	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			7	41	---	---	---	---					
HUWE1	10075	broad.mit.edu	37	X	53589091	53589093	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:53589091_53589093delTCC	uc004dsp.2	-	54	7719_7721	c.7317_7319delGGA	c.(7315-7320)GAGGAA>GAA	p.2439_2440EE>E	HUWE1_uc004dsn.2_In_Frame_Del_p.1263_1264EE>E	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2439_2440	Asp-rich.|Glu-rich.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						ttcctcatcttcctcctcctcct	0.438													8	102	---	---	---	---					
MAP7D3	79649	broad.mit.edu	37	X	135314194	135314194	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:135314194delG	uc004ezt.2	-	8	1013	c.922delC	c.(922-924)CAGfs	p.Q308fs	MAP7D3_uc004ezs.2_Frame_Shift_Del_p.Q272fs|MAP7D3_uc011mwc.1_Frame_Shift_Del_p.Q290fs|MAP7D3_uc010nsa.1_Frame_Shift_Del_p.Q266fs	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	308						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					ACATTCACCTGGGGGGGTGCA	0.532													7	710	---	---	---	---					
CD99L2	83692	broad.mit.edu	37	X	149984524	149984526	+	In_Frame_Del	DEL	GTG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:149984524_149984526delGTG	uc004fel.2	-	3	274_276	c.156_158delCAC	c.(154-159)ACCACA>ACA	p.52_53TT>T	CD99L2_uc004fek.2_5'Flank|CD99L2_uc004fem.2_Intron|CD99L2_uc004fen.2_Intron|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_In_Frame_Del_p.52_53TT>T	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	52_53	Extracellular (Potential).|Poly-Thr.				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCTATTGGTTGTGGTGGTGGTGG	0.552													11	594	---	---	---	---					
PASD1	139135	broad.mit.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:150817142_150817144delGCT	uc004fev.3	+	9	1017_1019	c.685_687delGCT	c.(685-687)GCTdel	p.A236del		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	236	Poly-Ala.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGTTGAACCCgctgctgctgctg	0.355													8	312	---	---	---	---					
MAGEA10	4109	broad.mit.edu	37	X	151303906	151303908	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:151303906_151303908delAGG	uc004ffk.2	-	5	593_595	c.185_187delCCT	c.(184-189)TCCTGC>TGC	p.S62del	MAGEA10_uc004ffl.2_In_Frame_Del_p.S62del	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	62	Poly-Ser.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGGATAGCaggaggaggagga	0.419													10	229	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8002-01A-11D-2201-08	TCGA-HZ-8002-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a094025-0de4-477e-853d-0bb1808e24b5	44e758af-a0d1-4d6f-addc-33ec19fd1be3	g.chrX:152087570_152087572delGAG	uc010ntv.1	+	7	512_514	c.475_477delGAG	c.(475-477)GAGdel	p.E165del	ZNF185_uc011myg.1_In_Frame_Del_p.E165del|ZNF185_uc011myh.1_In_Frame_Del_p.E165del|ZNF185_uc011myi.1_In_Frame_Del_p.E165del|ZNF185_uc011myj.1_In_Frame_Del_p.E165del|ZNF185_uc011myk.1_In_Frame_Del_p.E165del|ZNF185_uc004fgw.3_In_Frame_Del_p.E30del|ZNF185_uc004fgu.2_5'UTR|ZNF185_uc004fgv.2_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.522													11	80	---	---	---	---					
