Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VPS13D	55187	broad.mit.edu	37	1	12337882	12337882	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:12337882G>A	uc001atv.2	+	19	4378	c.4237G>A	c.(4237-4239)GGA>AGA	p.G1413R	VPS13D_uc001atw.2_Missense_Mutation_p.G1413R|VPS13D_uc001atx.2_Missense_Mutation_p.G601R	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1413					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TTTTGTGGCGGGAGATGATGA	0.468000													4	354					0	0	0.000248	0	0
PRDM2	7799	broad.mit.edu	37	1	14106589	14106589	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:14106589G>A	uc001avi.2	+	8	3155	c.2299G>A	c.(2299-2301)GGG>AGG	p.G767R	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.G767R|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Missense_Mutation_p.G524R|PRDM2_uc001avk.2_Missense_Mutation_p.G566R|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	767						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		GACCGATGCCGGGCTGACTTC	0.522000													6	397					0	0	0.001168	0	0
KDM1A	23028	broad.mit.edu	37	1	23376993	23376993	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:23376993C>G	uc001bgi.2	+	3	780	c.631C>G	c.(631-633)CTT>GTT	p.L211V	KDM1A_uc001bgj.2_Missense_Mutation_p.L231V	NM_015013	NP_055828	O60341	KDM1A_HUMAN	lysine-specific histone demethylase 1 isoform b	211	SWIRM.				blood coagulation|muscle cell development|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of protein binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin	androgen receptor binding|chromatin binding|enzyme binding|flavin adenine dinucleotide binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-K9 specific)|ligand-dependent nuclear receptor transcription coactivator activity|MyoD binding|oxidoreductase activity|p53 binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2						GAAGGTTTTTCTTTTCATTAG	0.308000													15	545					0	0	0.007413	0	0
ZNF436	80818	broad.mit.edu	37	1	23688908	23688908	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:23688908G>A	uc001bgt.2	-	3	1348	c.967C>T	c.(967-969)CGT>TGT	p.R323C	ZNF436_uc001bgu.2_Missense_Mutation_p.R323C	NM_030634	NP_085137	Q9C0F3	ZN436_HUMAN	zinc finger protein 436	323	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;5.97e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000977)|KIRC - Kidney renal clear cell carcinoma(1967;0.00336)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		CTGCGATGACGCACAAGGTCG	0.507000													6	575					0	0	0.001984	0	0
FAM46B	115572	broad.mit.edu	37	1	27333242	27333242	+	Silent	SNP	G	A	A	rs142664149	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:27333242G>A	uc010ofj.1	-	2	643	c.471C>T	c.(469-471)GCC>GCT	p.A157A		NM_052943	NP_443175	Q96A09	FA46B_HUMAN	hypothetical protein LOC115572	157										central_nervous_system(1)	1		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;7.71e-51)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|STAD - Stomach adenocarcinoma(196;0.00114)|READ - Rectum adenocarcinoma(331;0.0419)		GGCTCACACCGGCCGGCAGGA	0.612000													4	634					0	0	0.000602	0	0
AHDC1	27245	broad.mit.edu	37	1	27878155	27878155	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:27878155G>A	uc009vsy.2	-	6	1441	c.472C>T	c.(472-474)CCG>TCG	p.P158S	AHDC1_uc009vsz.1_Missense_Mutation_p.P158S|AHDC1_uc001boh.1_Missense_Mutation_p.P31S	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	158	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		CCGGGTGGCGGTGCAGGCGGG	0.632000													5	791					0	0	0.000602	0	0
XKR8	55113	broad.mit.edu	37	1	28293529	28293529	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:28293529G>T	uc001bph.1	+	3	1083	c.1006G>T	c.(1006-1008)GTG>TTG	p.V336L		NM_018053	NP_060523	Q9H6D3	XKR8_HUMAN	XK, Kell blood group complex subunit-related	336						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00588)|all_lung(284;0.00645)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;4.72e-24)|Colorectal(126;1.52e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00572)|READ - Rectum adenocarcinoma(331;0.0526)		TCTGCGGCTTGTGTACTACCA	0.637000													8	179					2.22609e-26	3.2967e-26	0.003610	1	0
C1orf109	54955	broad.mit.edu	37	1	38155339	38155339	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:38155339G>A	uc001cbp.2	-	2	404	c.214C>T	c.(214-216)CGG>TGG	p.R72W	C1orf109_uc010oig.1_Missense_Mutation_p.R135W|C1orf109_uc001cbo.2_Missense_Mutation_p.R134W|C1orf109_uc001cbq.1_Missense_Mutation_p.R72W|CDCA8_uc001cbr.2_5'Flank|CDCA8_uc001cbs.2_5'Flank	NM_017850	NP_060320	Q9NX04	CA109_HUMAN	hypothetical protein LOC54955	72											0		Myeloproliferative disorder(586;0.0393)				CGCCTCAGCCGCTCTTTTAAA	0.587000													5	537					0	0	0.001168	0	0
MACF1	23499	broad.mit.edu	37	1	39853866	39853866	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:39853866C>A	uc010oiu.1	+	22	10803	c.10672C>A	c.(10672-10674)CTG>ATG	p.L3558M	MACF1_uc010ois.1_Missense_Mutation_p.L3056M|MACF1_uc001cda.1_Missense_Mutation_p.L2943M|MACF1_uc001cdc.1_Missense_Mutation_p.L2122M	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	5123					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GGAAAACAAGCTGGAGGGGAT	0.507000													5	282					0.000157383	0.000202751	0.003080	1	0
KIAA0467	23334	broad.mit.edu	37	1	43913599	43913599	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:43913599G>A	uc001cjk.1	+	53	7285	c.6823G>A	c.(6823-6825)GCA>ACA	p.A2275T	KIAA0467_uc001cjl.1_Missense_Mutation_p.A263T	NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	3174						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TCACTGTGCTGCACCCTTTGA	0.587000													5	469					0	0	0.004482	0	0
RNF220	55182	broad.mit.edu	37	1	44877917	44877917	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:44877917G>A	uc001clv.1	+	2	508	c.148G>A	c.(148-150)GTA>ATA	p.V50I	RNF220_uc001clw.1_Missense_Mutation_p.V50I	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	50					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						ACCCTTTGGTGTACCTGTCTC	0.562000													6	881					0	0	0.000602	0	0
TYW3	127253	broad.mit.edu	37	1	75198865	75198865	+	Translation_Start_Site	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:75198865C>A	uc001dgn.2	+	1	26	c.-63C>A	c.(-65--61)GGCTG>GGATG		CRYZ_uc001dgk.2_5'UTR|CRYZ_uc001dgj.2_5'UTR|CRYZ_uc001dgl.2_5'UTR|CRYZ_uc001dgm.2_5'UTR|TYW3_uc010oqw.1_Translation_Start_Site|TYW3_uc010oqx.1_Translation_Start_Site|TYW3_uc010oqy.1_RNA	NM_138467	NP_612476	Q6IPR3	TYW3_HUMAN	tRNA-yW synthesizing protein 3 homolog isoform						tRNA processing		methyltransferase activity			ovary(2)	2						TTCAATATGGCTGCCCCCAGG	0.582000													8	37					0.00621372	0.00757953	0.006214	1	0
LPAR3	23566	broad.mit.edu	37	1	85279808	85279808	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:85279808G>A	uc001dkl.2	-	2	822	c.783C>T	c.(781-783)CTC>CTT	p.L261L	LPAR3_uc009wcj.1_Silent_p.L261L	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	261	Helical; Name=6; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						TCAGGCCGTCGAGGAGCAGAA	0.582000													14	369					0	0	0.003163	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144855783	144855783	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:144855783G>A	uc001elw.3	-	41	7061	c.6770C>T	c.(6769-6771)GCG>GTG	p.A2257V	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.A2151V|PDE4DIP_uc001elv.3_Missense_Mutation_p.A1264V	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2257					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGGCAGGGCCGCTCTCCAGAA	0.572000			T	PDGFRB	MPD								4	326					0	0	0.001984	0	0
NBPF10	100132406	broad.mit.edu	37	1	145328391	145328391	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:145328391A>G	uc001end.3	+	35	4499	c.4464A>G	c.(4462-4464)CAA>CAG	p.Q1488Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oym.1_Intron|NBPF10_uc010oyn.1_Intron|NBPF10_uc010oyo.1_Intron|NBPF10_uc010oyp.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	1413											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AAAAGGACCAAGAAGAGGAAG	0.468000													4	348					0	0	0.001216	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244000													8	512					0	0	0.006214	0	0
TXNIP	10628	broad.mit.edu	37	1	145440118	145440118	+	Silent	SNP	T	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:145440118T>A	uc001enn.3	+	4	893	c.552T>A	c.(550-552)ATT>ATA	p.I184I	NBPF10_uc001emp.3_Intron|TXNIP_uc001enm.1_Intron|TXNIP_uc010oys.1_Silent_p.I129I	NM_006472	NP_006463	Q9H3M7	TXNIP_HUMAN	thioredoxin interacting protein	184					cell cycle|keratinocyte differentiation|transcription, DNA-dependent		ubiquitin protein ligase binding			ovary(2)	2	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CTGCTCGAATTGACAGAAAAG	0.448000													31	720					0	0	0.007835	0	0
LIX1L	128077	broad.mit.edu	37	1	145498628	145498628	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:145498628G>A	uc001enr.2	+	6	938	c.864G>A	c.(862-864)CCG>CCA	p.P288P	NBPF10_uc001emp.3_Intron|LIX1L_uc009wiu.1_5'Flank	NM_153713	NP_714924	Q8IVB5	LIX1L_HUMAN	Lix1 homolog (mouse) like	288										ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGAGTGTGCCGGGGGCACTGT	0.582000													5	360					0	0	0.001168	0	0
TCHH	7062	broad.mit.edu	37	1	152082320	152082320	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:152082320T>C	uc001ezp.2	-	2	3373	c.3373A>G	c.(3373-3375)AGA>GGA	p.R1125G	TCHH_uc009wne.1_Missense_Mutation_p.R1125G	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1125	4-8.|10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			cgttcctctctcagcagctgc	0.224000													5	593					0	0	0.004482	0	0
RPTN	126638	broad.mit.edu	37	1	152128617	152128617	+	Missense_Mutation	SNP	T	C	C	rs12117644		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:152128617T>C	uc001ezs.1	-	3	1023	c.958A>G	c.(958-960)AGT>GGT	p.S320G		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	320	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCCGTCTGACTGTAGTGGGAA	0.507000													9	918					0	0	0.004482	0	0
FLG2	388698	broad.mit.edu	37	1	152326017	152326017	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:152326017C>A	uc001ezw.3	-	3	4318	c.4245G>T	c.(4243-4245)AGG>AGT	p.R1415S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1415							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCAGTTGTCCTGGACCCTC	0.527000													9	864					4.68919e-08	6.47006e-08	0.000673	1	0
FLG2	388698	broad.mit.edu	37	1	152327733	152327733	+	Silent	SNP	G	A	A	rs35770993		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:152327733G>A	uc001ezw.3	-	3	2602	c.2529C>T	c.(2527-2529)TCC>TCT	p.S843S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	843	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCATAGCTGGACTGATGTG	0.512000													6	907					0	0	0.003080	0	0
FLG2	388698	broad.mit.edu	37	1	152328282	152328282	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:152328282T>C	uc001ezw.3	-	3	2053	c.1980A>G	c.(1978-1980)TCA>TCG	p.S660S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	660	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCTGAGCCTGATCCATATT	0.488000													6	836					0	0	0.006214	0	0
TRIM46	80128	broad.mit.edu	37	1	155152138	155152138	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:155152138G>A	uc001fhs.1	+	8	1399	c.1316G>A	c.(1315-1317)CGC>CAC	p.R439H	RAG1AP1_uc010pey.1_Intron|TRIM46_uc009wpe.1_RNA|TRIM46_uc001fhq.2_RNA|TRIM46_uc001fhr.2_Missense_Mutation_p.R439H|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Missense_Mutation_p.R313H|TRIM46_uc001fhu.1_Missense_Mutation_p.R416H|TRIM46_uc009wpg.1_Missense_Mutation_p.R426H|TRIM46_uc001fhv.3_Missense_Mutation_p.R426H|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	439	Fibronectin type-III.					intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GACACCCAGCGCACCTTTGCC	0.637000													4	247					0	0	0.000602	0	0
KIAA0907	22889	broad.mit.edu	37	1	155887393	155887393	+	Missense_Mutation	SNP	T	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:155887393T>G	uc001fmi.1	-	11	1361	c.1337A>C	c.(1336-1338)CAG>CCG	p.Q446P	KIAA0907_uc001fmj.1_Missense_Mutation_p.Q446P|KIAA0907_uc009wrk.1_Missense_Mutation_p.Q303P|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	446	Pro-rich.										0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			gggctggggctggggctgggg	0.448000													34	296					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158631116	158631116	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:158631116G>C	uc001fst.1	-	18	2747	c.2548C>G	c.(2548-2550)CAA>GAA	p.Q850E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	850	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTTATCTCTTGAATGCGTGGT	0.443000													12	508					0	0	0.004007	0	0
TOMM40L	84134	broad.mit.edu	37	1	161197125	161197125	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:161197125G>A	uc001fzd.2	+	4	490	c.261G>A	c.(259-261)CAG>CAA	p.Q87Q	TOMM40L_uc010pkk.1_RNA|TOMM40L_uc010pkl.1_Silent_p.Q87Q|TOMM40L_uc009wue.2_Intron|TOMM40L_uc009wuf.1_RNA|TOMM40L_uc001fze.2_Silent_p.Q87Q	NM_032174	NP_115550	Q969M1	TM40L_HUMAN	translocase of outer mitochondrial membrane 40	87					protein transport	mitochondrial outer membrane|pore complex	porin activity|voltage-gated anion channel activity			large_intestine(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GGGATTGGCAGCTCAGTCCCA	0.557000											OREG0013943	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	235					0	0	0.000602	0	0
LRRC52	440699	broad.mit.edu	37	1	165513908	165513908	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:165513908C>A	uc001gde.2	+	1	431	c.375C>A	c.(373-375)AGC>AGA	p.S125R	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	125	Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					CGGTGCTCAGCAACCTGGTGC	0.493000													6	837					0.000157383	0.000202751	0.003080	1	0
F5	2153	broad.mit.edu	37	1	169510502	169510502	+	Missense_Mutation	SNP	G	T	T	rs140018525	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:169510502G>T	uc001ggg.1	-	13	3971	c.3826C>A	c.(3826-3828)CTT>ATT	p.L1276I		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1276	2-11.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGGAGAAAGGGGCATCTGA	0.502000													11	852					1.16021e-09	1.64119e-09	0.007291	1	0
F5	2153	broad.mit.edu	37	1	169510577	169510577	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:169510577A>G	uc001ggg.1	-	13	3896	c.3751T>C	c.(3751-3753)TTA>CTA	p.L1251L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1251	2-8.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CTGAGGTCTAAAGAAAGGGTT	0.522000													7	906					0	0	0.000673	0	0
C1orf112	55732	broad.mit.edu	37	1	169806217	169806217	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:169806217G>A	uc001ggp.2	+	18	1999	c.1689G>A	c.(1687-1689)CTG>CTA	p.L563L	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggq.2_Silent_p.L563L|C1orf112_uc009wvt.2_Silent_p.L240L|C1orf112_uc009wvu.1_Silent_p.L439L|C1orf112_uc001ggr.2_Silent_p.L428L|C1orf112_uc010plv.1_Silent_p.L505L	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	563											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GGAAATGGCTGAGCAGGAGTC	0.353000													5	424					0	0	0.001168	0	0
RASAL2	9462	broad.mit.edu	37	1	178412311	178412311	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:178412311G>T	uc001glr.2	+	6	1110	c.985G>T	c.(985-987)GAG>TAG	p.E329*	RASAL2_uc001glq.2_Nonsense_Mutation_p.E477*	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	329	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						GAGAAATAAAGAGGAGTTGGC	0.448000													5	329					8.12818e-05	0.000106065	0.001984	1	0
DHX9	1660	broad.mit.edu	37	1	182850691	182850691	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:182850691G>A	uc001gpr.2	+	24	2986	c.2823G>A	c.(2821-2823)GAG>GAA	p.E941E	DHX9_uc001gps.2_Silent_p.E727E|DHX9_uc001gpt.2_Silent_p.E220E|DHX9_uc009wyd.2_5'UTR	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	941					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						GTTTTTGTGAGCACAAAAGAC	0.358000													6	602					0	0	0.001984	0	0
PRG4	10216	broad.mit.edu	37	1	186276981	186276981	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:186276981A>G	uc001gru.3	+	7	2181	c.2130A>G	c.(2128-2130)AAA>AAG	p.K710K	PRG4_uc001grt.3_Silent_p.K669K|PRG4_uc009wyl.2_Silent_p.K617K|PRG4_uc009wym.2_Silent_p.K576K|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	710	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|43; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTACCCCTAAAGGGACTGCTC	0.582000													5	592					0	0	0.004482	0	0
ASPM	259266	broad.mit.edu	37	1	197062202	197062202	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:197062202C>T	uc001gtu.2	-	21	9531	c.9274G>A	c.(9274-9276)GGT>AGT	p.G3092S	ASPM_uc001gtv.2_Missense_Mutation_p.G1507S|ASPM_uc001gtw.3_Missense_Mutation_p.G940S	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	3092	IQ 37.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						ACTAGCCAACCACGCACCAGT	0.323000													8	438					0	0	0.000673	0	0
ATP2B4	493	broad.mit.edu	37	1	203668711	203668711	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:203668711G>A	uc001gzw.2	+	4	1399	c.515G>A	c.(514-516)AGC>AAC	p.S172N	ATP2B4_uc001gzv.2_Missense_Mutation_p.S172N|ATP2B4_uc009xaq.2_Missense_Mutation_p.S172N	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	172	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AATGATTGGAGCAAAGAGAAG	0.512000													6	795					0	0	0.001984	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:203821508C>G	uc001hac.2	+	20	3030	c.2414C>G	c.(2413-2415)TCA>TGA	p.S805*	ZC3H11A_uc001had.2_Nonsense_Mutation_p.S805*|ZC3H11A_uc001hae.2_Nonsense_Mutation_p.S805*|ZC3H11A_uc001haf.2_Nonsense_Mutation_p.S805*|ZC3H11A_uc010pqm.1_Nonsense_Mutation_p.S751*	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	805							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CTTGAGCTATCAGAAATGATT	0.378000													5	247					0	0	0.001168	0	0
KISS1	3814	broad.mit.edu	37	1	204159743	204159743	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:204159743C>T	uc001har.2	-	3	440	c.286G>A	c.(286-288)GCA>ACA	p.A96T		NM_002256	NP_002247	Q15726	KISS1_HUMAN	KiSS-1 metastasis-suppressor	96					cytoskeleton organization	extracellular region	protein binding			ovary(1)	1	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)	Breast(1374;9.42e-05)	KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.069)|Kidney(21;0.0934)|Epithelial(59;0.239)	Colorectal(1306;0.0129)		CCCTGGGGTGCGGGGATCTGG	0.741000													3	39					0	0	0.004672	0	0
SYT14	255928	broad.mit.edu	37	1	210187041	210187041	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:210187041T>C	uc009xcv.2	+	3	197	c.125T>C	c.(124-126)CTT>CCT	p.L42P	SYT14_uc001hhs.3_Missense_Mutation_p.L87P|SYT14_uc001hht.3_Missense_Mutation_p.L42P|SYT14_uc001hhu.3_RNA|SYT14_uc010psn.1_Missense_Mutation_p.L87P|SYT14_uc010pso.1_Missense_Mutation_p.L4P	NM_153262	NP_694994	Q8NB59	SYT14_HUMAN	synaptotagmin XIV isoform 4	42	Helical; Signal-anchor for type III membrane protein; (Potential).					integral to membrane				ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.085)		ATGCTGCTCCTTTTTCTCTAT	0.348000													4	776					0	0	0.000248	0	0
NSL1	25936	broad.mit.edu	37	1	212964986	212964986	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:212964986G>T	uc001hjn.2	-	1	154	c.120C>A	c.(118-120)TGC>TGA	p.C40*	NSL1_uc001hjm.2_Nonsense_Mutation_p.C40*|NSL1_uc010pti.1_Nonsense_Mutation_p.C40*|TATDN3_uc001hjo.2_5'Flank|TATDN3_uc010ptj.1_5'Flank|TATDN3_uc010ptk.1_5'Flank|TATDN3_uc001hjp.2_5'Flank|TATDN3_uc010ptl.1_5'Flank	NM_015471	NP_056286	Q96IY1	NSL1_HUMAN	NSL1, MIND kinetochore complex component isoform	40					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00597)|all cancers(67;0.00893)|GBM - Glioblastoma multiforme(131;0.0514)|Epithelial(68;0.102)		GCTTCGAGGTGCAGCGCACCC	0.647000													10	350					3.86212e-05	5.09235e-05	0.000673	1	0
DUSP10	11221	broad.mit.edu	37	1	221912365	221912365	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:221912365T>C	uc001hmy.1	-	2	904	c.722A>G	c.(721-723)AAT>AGT	p.N241S	DUSP10_uc001hmx.1_5'Flank|DUSP10_uc001hmz.1_Intron	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	241	Rhodanese.				inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		GCTTGGTTCATTGGTATTCTC	0.458000													4	621					0	0	0.000248	0	0
NUP133	55746	broad.mit.edu	37	1	229625826	229625826	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:229625826G>A	uc001htn.2	-	9	1162	c.1070C>T	c.(1069-1071)GCA>GTA	p.A357V		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	357					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				GTGCCATGCTGCTGCCAAAAT	0.289000													5	171					0	0	0.000602	0	0
NUP133	55746	broad.mit.edu	37	1	229635558	229635558	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:229635558G>A	uc001htn.2	-	5	613	c.521C>T	c.(520-522)GCT>GTT	p.A174V		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	174					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				AACCATGACAGCAACAGCCTC	0.443000													5	240					0	0	0.003080	0	0
FMN2	56776	broad.mit.edu	37	1	240371421	240371421	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:240371421C>T	uc010pyd.1	+	5	3534	c.3309C>T	c.(3307-3309)CCC>CCT	p.P1103P	FMN2_uc010pye.1_Silent_p.P1107P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1103	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCTCTACCCGGAGTGGGCA	0.736000													5	540					0	0	0.003080	0	0
FMN2	56776	broad.mit.edu	37	1	240371430	240371430	+	Silent	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:240371430C>A	uc010pyd.1	+	5	3543	c.3318C>A	c.(3316-3318)GGC>GGA	p.G1106G	FMN2_uc010pye.1_Silent_p.G1110G	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1106	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCGGAGTGGGCATACCTCCTC	0.731000													5	553					1.58986e-06	2.13532e-06	0.000673	1	0
PFKP	5214	broad.mit.edu	37	10	3172122	3172122	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:3172122G>A	uc001igp.2	+	17	1831	c.1795G>A	c.(1795-1797)GGA>AGA	p.G599R	PFKP_uc001igq.2_Missense_Mutation_p.G591R|PFKP_uc009xhr.2_Missense_Mutation_p.G561R|PFKP_uc009xhs.1_Missense_Mutation_p.G383R|PFKP_uc009xht.2_Missense_Mutation_p.G337R|PFKP_uc009xhu.2_Missense_Mutation_p.G105R	NM_002627	NP_002618	Q01813	K6PP_HUMAN	phosphofructokinase, platelet	599					glycolysis	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|metal ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3				GBM - Glioblastoma multiforme(1;0.000975)|all cancers(11;0.00351)|Epithelial(11;0.142)		GCTCGCGGCCGGAGCTGATGC	0.632000													4	283					0	0	0.001168	0	0
ITIH2	3698	broad.mit.edu	37	10	7747118	7747118	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:7747118A>G	uc001ijs.2	+	2	294	c.132A>G	c.(130-132)CAA>CAG	p.Q44Q		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	44					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						GCAAATTTCAATTGGTGGCAG	0.323000													4	607					0	0	0.001168	0	0
C10orf111	221060	broad.mit.edu	37	10	15138452	15138452	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:15138452G>A	uc001inw.2	-	2	646	c.372C>T	c.(370-372)TCC>TCT	p.S124S	RPP38_uc001iny.3_5'Flank|RPP38_uc009xjm.2_5'Flank|RPP38_uc001inx.3_5'Flank	NM_153244	NP_694976	Q8N326	CJ111_HUMAN	hypothetical protein LOC221060	124	Helical; (Potential).					integral to membrane					0						AAGTAAGGCCGGAAAAAGCGG	0.478000													4	262					0	0	0.000248	0	0
MTPAP	55149	broad.mit.edu	37	10	30602601	30602601	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:30602601T>C	uc001iva.3	-	9	1749	c.1686A>G	c.(1684-1686)AAA>AAG	p.K562K	MTPAP_uc001ivb.3_Silent_p.K692K	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	562					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						TTCTGTTACCTTTTAAAGATT	0.373000													5	634					0	0	0.000602	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430948	37430948	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:37430948C>G	uc001iza.1	+	7	1054	c.955C>G	c.(955-957)CCA>GCA	p.P319A		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	375						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATTTACGTGGCCAGCAAAAGG	0.423000													6	460					0	0	0.003080	0	0
BMS1	9790	broad.mit.edu	37	10	43318571	43318571	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:43318571G>A	uc001jaj.2	+	20	3496	c.3138G>A	c.(3136-3138)ATG>ATA	p.M1046I		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1046					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						TGTAGGGAATGTTTAATTCTG	0.393000													8	667					0	0	0.002299	0	0
A1CF	29974	broad.mit.edu	37	10	52569681	52569681	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:52569681C>T	uc001jjj.2	-	12	1794	c.1606G>A	c.(1606-1608)GCT>ACT	p.A536T	A1CF_uc010qhn.1_Missense_Mutation_p.A536T|A1CF_uc001jji.2_Missense_Mutation_p.A528T|A1CF_uc001jjh.2_Missense_Mutation_p.A536T|A1CF_uc010qho.1_Missense_Mutation_p.A544T|A1CF_uc009xov.2_Missense_Mutation_p.A528T	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	536					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						gcagcagcagcagtagcCATG	0.448000													6	354					0	0	0.001984	0	0
KIAA0913	23053	broad.mit.edu	37	10	75561132	75561132	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:75561132C>T	uc009xrl.2	+	26	5401	c.5369C>T	c.(5368-5370)GCG>GTG	p.A1790V	KIAA0913_uc001jve.2_Missense_Mutation_p.A1795V|KIAA0913_uc001jvf.2_Missense_Mutation_p.A1608V|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Missense_Mutation_p.A1217V|KIAA0913_uc010qkr.1_Missense_Mutation_p.A1205V|KIAA0913_uc001jvj.2_Silent_p.C1182C	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	1790							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					TTTGTGAATGCGATCCGGAGT	0.557000													4	200					0	0	0.000248	0	0
GLUD1	2746	broad.mit.edu	37	10	88854400	88854400	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:88854400G>T	uc001keh.2	-	1	224	c.127C>A	c.(127-129)CCG>ACG	p.P43T	FAM35A_uc001kei.3_5'Flank|GLUD1_uc001keg.2_5'Flank|GLUD1_uc010qmp.1_5'Flank	NM_005271	NP_005262	P00367	DHE3_HUMAN	glutamate dehydrogenase 1 precursor	43					glutamate biosynthetic process|glutamate catabolic process|positive regulation of insulin secretion	mitochondrial matrix	ADP binding|ATP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|identical protein binding|leucine binding|NAD+ binding				0					L-Glutamic Acid(DB00142)|NADH(DB00157)	GCCAGCCCCGGCTGCGGGGCG	0.756000													14	181					9.16793e-09	1.27895e-08	0.004990	1	0
PAPSS2	9060	broad.mit.edu	37	10	89473817	89473817	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:89473817G>A	uc001kex.2	+	4	661	c.398G>A	c.(397-399)CGC>CAC	p.R133H	PAPSS2_uc001kew.2_Missense_Mutation_p.R133H|PAPSS2_uc009xtg.1_RNA	NM_004670	NP_004661	O95340	PAPS2_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase 2	133	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|protein binding|sulfate adenylyltransferase (ATP) activity			central_nervous_system(1)|skin(1)	2		Melanoma(5;0.019)|Colorectal(252;0.123)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00164)|Colorectal(12;0.000323)|COAD - Colon adenocarcinoma(12;0.00124)		GAGAATGCCCGCAAAATACAT	0.363000													7	517					0	0	0.004482	0	0
HTR7	3363	broad.mit.edu	37	10	92617259	92617259	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:92617259G>T	uc001kha.2	-	1	413	c.170C>A	c.(169-171)GCG>GAG	p.A57E	HTR7_uc001kgz.2_Missense_Mutation_p.A57E|HTR7_uc001khb.2_Missense_Mutation_p.A57E	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	57	Extracellular (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	CCAGGTGGGCGCCGGGCTGGC	0.711000													12	67					2.80697e-09	3.94853e-09	0.000978	1	0
MMS19	64210	broad.mit.edu	37	10	99236660	99236660	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:99236660T>C	uc001kns.3	-	7	779	c.554A>G	c.(553-555)AAG>AGG	p.K185R	MMS19_uc009xvt.2_Missense_Mutation_p.K27R|MMS19_uc001knr.2_Missense_Mutation_p.K27R|MMS19_uc010qox.1_Intron|MMS19_uc001knt.2_Missense_Mutation_p.K185R|MMS19_uc001knu.1_RNA	NM_022362	NP_071757	Q96T76	MMS19_HUMAN	MMS19 nucleotide excision repair homolog	185					chromosome segregation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|response to hormone stimulus|transcription, DNA-dependent|two-component signal transduction system (phosphorelay)	cytoplasm|holo TFIIH complex|MMXD complex	estrogen receptor binding|protein binding, bridging|receptor signaling complex scaffold activity|transcription coactivator activity				0		Colorectal(252;0.0846)		Epithelial(162;3.33e-10)|all cancers(201;2.74e-08)		ACGGGGATCCTTTTCCCCATC	0.507000								Direct_reversal_of_damage|NER					4	302					0	0	0.000248	0	0
ZRANB1	54764	broad.mit.edu	37	10	126671819	126671819	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:126671819G>A	uc001lic.2	+	7	1995	c.1624G>A	c.(1624-1626)GTA>ATA	p.V542I	ZRANB1_uc010qug.1_Missense_Mutation_p.V568I	NM_017580	NP_060050	Q9UGI0	ZRAN1_HUMAN	zinc finger, RAN-binding domain containing 1	542	OTU.|TRAF-binding.				positive regulation of Wnt receptor signaling pathway|protein K63-linked deubiquitination|Wnt receptor signaling pathway	aggresome|centrosome|intermediate filament cytoskeleton|nucleolus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.172)		Colorectal(40;0.113)|COAD - Colon adenocarcinoma(40;0.119)		AGTTTATGGAGTAAAATATTA	0.373000													5	566					0	0	0.000602	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1628952	1628952	+	Missense_Mutation	SNP	A	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:1628952A>T	uc001ltw.1	-	1	742	c.664T>A	c.(664-666)TGC>AGC	p.C222S		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	222	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		TGGGAGGAGCAGGGCTTgcag	0.313000													6	864					0	0	0.004672	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643000	1643000	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:1643000C>T	uc009ycy.1	-	3	549	c.462G>A	c.(460-462)AAG>AAA	p.K154K		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	168	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CACAGCCCCCCTTGGAGCCCC	0.682000													6	564					0	0	0.004482	0	0
ZNF195	7748	broad.mit.edu	37	11	3380510	3380510	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:3380510T>C	uc001lxt.2	-	6	1906	c.1728A>G	c.(1726-1728)AAA>AAG	p.K576K	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Silent_p.K553K|ZNF195_uc001lxs.2_Silent_p.K504K|ZNF195_uc010qxr.1_Silent_p.K557K|ZNF195_uc009ydz.2_Silent_p.K531K|ZNF195_uc001lxu.2_Silent_p.K508K	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	576					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		ATTTGTAGGGTTTCTCTCCAG	0.393000													9	580					0	0	0.001368	0	0
NLRP14	338323	broad.mit.edu	37	11	7064302	7064302	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:7064302G>T	uc001mfb.1	+	4	1368	c.1045G>T	c.(1045-1047)GCC>TCC	p.A349S		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	349	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		TAAGAGGTGGGCCATGAAAGT	0.428000													17	547					0.00121646	0.00152814	0.001216	1	0
C11orf41	25758	broad.mit.edu	37	11	33564949	33564949	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:33564949G>A	uc001mup.3	+	1	1073	c.949G>A	c.(949-951)GCA>ACA	p.A317T	C11orf41_uc001mun.1_Missense_Mutation_p.A317T	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	317						integral to membrane				ovary(2)	2						CATCATTACAGCACCAAGGAC	0.483000											OREG0020868	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	851					0	0	0.000602	0	0
ABTB2	25841	broad.mit.edu	37	11	34219002	34219002	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:34219002G>A	uc001mvl.1	-	3	786	c.556C>T	c.(556-558)CAG>TAG	p.Q186*		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	186							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				TGTGGCGGCTGGCGGGCCTGG	0.682000													3	165					0	0	0.004672	0	0
MYBPC3	4607	broad.mit.edu	37	11	47354176	47354176	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:47354176G>A	uc001nfa.3	-	31	3623	c.3568C>T	c.(3568-3570)CGC>TGC	p.R1190C		NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	1189	Ig-like C2-type 7.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		ATGACCGAGCGGTTCACCAGG	0.612000													3	153					0	0	0.000248	0	0
AGBL2	79841	broad.mit.edu	37	11	47712041	47712041	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:47712041G>T	uc001ngg.2	-	9	1318	c.1218C>A	c.(1216-1218)TAC>TAA	p.Y406*	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Nonsense_Mutation_p.Y368*|AGBL2_uc001ngh.1_Nonsense_Mutation_p.Y350*	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	406					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						CTGACAGGAGGTAGCATTGCA	0.458000													4	423					4.096e-09	5.74578e-09	0.001168	1	0
OR5D14	219436	broad.mit.edu	37	11	55563503	55563503	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:55563503C>T	uc010rim.1	+	1	472	c.472C>T	c.(472-474)CCC>TCC	p.P158S		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				CATGTTTGGCCCCTTGGTACT	0.493000													4	645					0	0	0.000248	0	0
EML3	256364	broad.mit.edu	37	11	62376510	62376510	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:62376510G>A	uc001ntu.1	-	7	1161	c.853C>T	c.(853-855)CGG>TGG	p.R285W	EML3_uc001ntr.1_Missense_Mutation_p.R257W|EML3_uc001nts.1_Missense_Mutation_p.R257W|EML3_uc001ntt.1_Missense_Mutation_p.R169W|EML3_uc010rly.1_Missense_Mutation_p.R285W|EML3_uc009yny.1_Missense_Mutation_p.R68W	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	285						cytoplasm|microtubule	protein binding			ovary(1)	1						CCTCCAGGCCGGTACAGCACC	0.632000													5	791					0	0	0.000248	0	0
SLC22A8	9376	broad.mit.edu	37	11	62760741	62760741	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:62760741G>A	uc001nwo.2	-	11	1733	c.1597C>T	c.(1597-1599)CAG>TAG	p.Q533*	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_3'UTR|SLC22A8_uc009yom.2_Nonsense_Mutation_p.Q410*|SLC22A8_uc010rmm.1_Nonsense_Mutation_p.Q442*|SLC22A8_uc009yon.2_Nonsense_Mutation_p.Q533*	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	533	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CCGTGAGGCTGTAGAGGGATC	0.607000													5	129					0	0	0.004482	0	0
NRXN2	9379	broad.mit.edu	37	11	64374789	64374789	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:64374789C>A	uc001oap.2	-	8	2391	c.1880G>T	c.(1879-1881)AGC>ATC	p.S627I	NRXN2_uc001oar.2_Missense_Mutation_p.S1673I|NRXN2_uc001oas.2_Missense_Mutation_p.S1603I|NRXN2_uc001oao.2_Missense_Mutation_p.S313I|NRXN2_uc001oaq.2_Missense_Mutation_p.S1340I	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	627	Cytoplasmic (Potential).				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GTAGTTTCGGCTCTGGTCCAC	0.597000													8	245					0.00621372	0.00757953	0.006214	1	0
KDM2A	22992	broad.mit.edu	37	11	67018096	67018096	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:67018096G>A	uc001ojw.2	+	17	3459	c.2595G>A	c.(2593-2595)GAG>GAA	p.E865E	KDM2A_uc001ojx.2_Intron|KDM2A_uc001ojy.2_Silent_p.E559E|KDM2A_uc010rpn.1_Silent_p.E426E|KDM2A_uc001ojz.1_Silent_p.E323E|KDM2A_uc001oka.2_5'Flank	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	865					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						aggaggaggaggaagaTGACA	0.483000													5	100					0	0	0.000602	0	0
TCIRG1	10312	broad.mit.edu	37	11	67818008	67818008	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:67818008G>A	uc001one.2	+	19	2399	c.2291G>A	c.(2290-2292)CGG>CAG	p.R764Q	TCIRG1_uc001ong.2_Missense_Mutation_p.R548Q|TCIRG1_uc001onh.2_Missense_Mutation_p.R466Q|TCIRG1_uc001oni.2_Missense_Mutation_p.R268Q|TCIRG1_uc009ysd.2_Intron	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	764	Lumenal (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						GGCCTGGGCCGGGAGGTGGGC	0.647000													5	698					0	0	0.001168	0	0
NOX4	50507	broad.mit.edu	37	11	89106611	89106611	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:89106611C>T	uc001pct.2	-	12	1363	c.1124G>A	c.(1123-1125)GGA>GAA	p.G375E	NOX4_uc009yvr.2_Missense_Mutation_p.G350E|NOX4_uc001pcu.2_Missense_Mutation_p.G301E|NOX4_uc001pcw.2_Missense_Mutation_p.G68E|NOX4_uc001pcx.2_Missense_Mutation_p.G68E|NOX4_uc001pcv.2_Missense_Mutation_p.G375E|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_Missense_Mutation_p.G209E|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Missense_Mutation_p.G351E|NOX4_uc009yvq.2_Missense_Mutation_p.G351E	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	375	FAD-binding FR-type.|Extracellular (Potential).|Mediates interaction with TLR4.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				TGTCCAGTCTCCTACTATTTT	0.279000													9	798					0	0	0.000978	0	0
FOLH1B	219595	broad.mit.edu	37	11	89395322	89395322	+	Translation_Start_Site	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:89395322C>T	uc001pda.2	+	2	433	c.-93C>T	c.(-95--91)TACGC>TATGC			NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B						proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TTTCAGAATACGCTTATAGGC	0.328000													7	238					0	0	0.000673	0	0
VPS11	55823	broad.mit.edu	37	11	118942420	118942420	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:118942420G>A	uc010ryx.1	+	6	793	c.751G>A	c.(751-753)GGG>AGG	p.G251R	VPS11_uc010ryy.1_Missense_Mutation_p.G97R	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	251					protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		CATTGTGGCCGGGGATGAGTG	0.557000													5	181					0	0	0.001984	0	0
OR10G4	390264	broad.mit.edu	37	11	123886737	123886737	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:123886737T>C	uc010sac.1	+	1	456	c.456T>C	c.(454-456)TCT>TCC	p.S152S		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TCAGTGGCTCTCTGCACTCTG	0.562000													16	531					0	0	0.003954	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418000													9	538					0	0	0.001368	0	0
CCDC15	80071	broad.mit.edu	37	11	124857562	124857562	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:124857562A>G	uc001qbm.3	+	8	1699	c.1440A>G	c.(1438-1440)TTA>TTG	p.L480L		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	480						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		AGAATTTTTTATCTAGAGACC	0.408000													6	695					0	0	0.001855	0	0
DCP1B	196513	broad.mit.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:2062350C>G	uc001qjx.1	-	7	836	c.756G>C	c.(754-756)CAG>CAC	p.Q252H	DCP1B_uc010sdy.1_Missense_Mutation_p.Q150H	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	252	Poly-Gln.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			gctgctgctgctgGTGGAGAG	0.458000													5	213					0	0	0.001168	0	0
CD27	939	broad.mit.edu	37	12	6554600	6554600	+	Silent	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:6554600C>A	uc001qod.2	+	2	358	c.147C>A	c.(145-147)CTC>CTA	p.L49L	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_Intron|LOC678655_uc009zel.1_Intron|CD27_uc001qoe.2_5'UTR	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,	49	Extracellular (Potential).|TNFR-Cys 1.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						GAACATTCCTCGTGAAGGACT	0.582000													5	732					0.00198382	0.00248593	0.001984	1	0
ETV6	2120	broad.mit.edu	37	12	12037452	12037452	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:12037452G>A	uc001qzz.2	+	6	1357	c.1083G>A	c.(1081-1083)GAG>GAA	p.E361E	ETV6_uc001raa.1_Intron	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	361	ETS.					cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				TCCGATGGGAGGACAAAGAAT	0.463000			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								4	682					0	0	0.000602	0	0
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	G	G	rs121913530		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:25398285C>G	uc001rgp.1	-	2	215	c.34G>C	c.(34-36)GGT>CGT	p.G12R	KRAS_uc001rgq.1_Missense_Mutation_p.G12R|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12G(6)|p.G12N(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CCTACGCCACCAGCTCCAACT	0.348000	G12C(UMUC3_URINARY_TRACT)|G12R(CAL62_THYROID)|G12C(CALU1_LUNG)|G12C(NCIH2030_LUNG)|G12C(LU99_LUNG)|G12C(NCIH1792_LUNG)|G12R(KP2_PANCREAS)|G12C(KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(NCIH2122_LUNG)|G12C(NCIH358_LUNG)|G12R(PSN1_PANCREAS)|G12C(KYSE410_OESOPHAGUS)|G12S(A549_LUNG)|G12R(HUPT3_PANCREAS)|G12R(TCCPAN2_PANCREAS)|G12C(HCC44_LUNG)|G12S(KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(SW1463_LARGE_INTESTINE)|G12C(NCIH23_LUNG)|G12C(LU65_LUNG)|G12C(NCIH1373_LUNG)|G12C(MIAPACA2_PANCREAS)|G12R(HS274T_BREAST)|G12S(LS123_LARGE_INTESTINE)|G12C(SW1573_LUNG)|G12C(SW837_LARGE_INTESTINE)|G12C(OV56_OVARY)|G12C(IALM_LUNG)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			5	154					0	0	0.001984	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42854058	42854058	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:42854058G>A	uc010skv.1	-	8	2336	c.2049C>T	c.(2047-2049)TCC>TCT	p.S683S	PRICKLE1_uc001rnl.2_Silent_p.S683S|PRICKLE1_uc010skw.1_Silent_p.S683S|PRICKLE1_uc001rnm.2_Silent_p.S683S|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	683					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		GGGCATTGTCGGAGCGGGACT	0.483000													4	373					0	0	0.000248	0	0
TROAP	10024	broad.mit.edu	37	12	49724313	49724313	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:49724313G>T	uc001rtx.3	+	13	1852	c.1685G>T	c.(1684-1686)AGT>ATT	p.S562I	TROAP_uc009zlh.2_Missense_Mutation_p.S562I|TROAP_uc001rty.2_Missense_Mutation_p.S270I	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	562	4 X 33 AA approximate tandem repeats.|Cys-rich.|2.				cell adhesion	cytoplasm				ovary(1)	1						TGCTGTAGGAGTGAGCCTGAG	0.592000													5	275					3.59834e-05	4.76945e-05	0.001168	1	0
C12orf44	60673	broad.mit.edu	37	12	52470686	52470686	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:52470686G>A	uc001rzu.3	+	4	844	c.369G>A	c.(367-369)ACG>ACA	p.T123T	C12orf44_uc009zmd.2_Silent_p.T123T|uc009zme.1_5'Flank	NM_021934	NP_068753	Q9BSB4	ATGA1_HUMAN	Atg13-interacting protein	123					autophagic vacuole assembly	pre-autophagosomal structure	identical protein binding|protein complex binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0978)		AAGTGTGGACGGTCAAGGTGC	0.582000													4	269					0	0	0.000602	0	0
LRP1	4035	broad.mit.edu	37	12	57605751	57605751	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:57605751C>G	uc001snd.2	+	87	13766	c.13300C>G	c.(13300-13302)CTG>GTG	p.L4434V		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4434	Helical; (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCTGCTGCTGCTGGTTCTGGT	0.547000													5	680					0	0	0.001168	0	0
UBE2N	7334	broad.mit.edu	37	12	93804623	93804623	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:93804623C>T	uc001tcp.2	-	3	671	c.305G>A	c.(304-306)CGC>CAC	p.R102H		NM_003348	NP_003339	P61088	UBE2N_HUMAN	ubiquitin-conjugating enzyme E2N	102					DNA double-strand break processing|double-strand break repair via homologous recombination|histone ubiquitination|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of DNA repair|positive regulation of histone modification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity|postreplication repair|protein K63-linked ubiquitination|proteolysis|regulation of histone ubiquitination|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-MMS2 complex|UBC13-UEV1A complex|ubiquitin ligase complex	ATP binding|ubiquitin binding|ubiquitin-protein ligase activity				0						CAGAACTGTGCGGATCTGCAG	0.498000								Direct_reversal_of_damage|Rad6_pathway					6	503					0	0	0.001984	0	0
RPH3A	22895	broad.mit.edu	37	12	113303278	113303278	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:113303278G>A	uc010syl.1	+	6	652	c.290G>A	c.(289-291)CGC>CAC	p.R97H	RPH3A_uc001ttz.2_Missense_Mutation_p.R97H|RPH3A_uc001tty.2_Missense_Mutation_p.R93H|RPH3A_uc009zwe.1_Missense_Mutation_p.R93H|RPH3A_uc010sym.1_Missense_Mutation_p.R48H|RPH3A_uc001tua.2_5'Flank	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	97	RabBD.|FYVE-type.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		GGGGTGAACCGCTGCATACTG	0.522000													24	387					0	0	0.002299	0	0
NCOR2	9612	broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:124887093C>T	uc010tba.1	-	14	1614	c.1497G>A	c.(1495-1497)CAG>CAA	p.Q499Q	NCOR2_uc010tay.1_Silent_p.Q499Q|NCOR2_uc010taz.1_Silent_p.Q499Q|NCOR2_uc010tbb.1_Silent_p.Q499Q|NCOR2_uc010tbc.1_Silent_p.Q498Q|NCOR2_uc001ugj.1_Silent_p.Q499Q	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	499	Poly-Gln.				cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		gctgctgctgctgttgttgct	0.328000													3	19					0	0	0.004672	0	0
SCARB1	949	broad.mit.edu	37	12	125270966	125270966	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:125270966G>A	uc001ugo.3	-	11	1591	c.1338C>T	c.(1336-1338)TAC>TAT	p.Y446Y	SCARB1_uc001ugn.3_Silent_p.Y446Y|SCARB1_uc001ugm.3_Silent_p.Y446Y|SCARB1_uc010tbd.1_Intron|SCARB1_uc010tbe.1_Silent_p.Y405Y|SCARB1_uc001ugp.3_Silent_p.Y446Y	NM_005505	NP_005496	Q8WTV0	SCRB1_HUMAN	scavenger receptor class B, member 1 isoform 1	446	Helical; (Potential).				adhesion to symbiont|cell adhesion|cholesterol efflux|cholesterol homeostasis|cholesterol import|detection of lipopolysaccharide|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|lipopolysaccharide transport|lipoprotein metabolic process|positive regulation of cholesterol storage|positive regulation of endothelial cell migration|positive regulation of nitric-oxide synthase activity|recognition of apoptotic cell|reverse cholesterol transport|triglyceride homeostasis|wound healing	caveola	1-phosphatidylinositol binding|apolipoprotein A-I binding|high-density lipoprotein particle receptor activity|lipopolysaccharide receptor activity|low-density lipoprotein particle binding|phosphatidylserine binding|transporter activity			kidney(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000116)|Epithelial(86;0.000415)|all cancers(50;0.00395)	Phosphatidylserine(DB00144)	CCAGGAGGACGTACTGGGCAT	0.612000													5	486					0	0	0.001168	0	0
ATP12A	479	broad.mit.edu	37	13	25281479	25281479	+	Missense_Mutation	SNP	G	A	A	rs7328155		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:25281479G>A	uc001upp.2	+	17	2588	c.2401G>A	c.(2401-2403)GAG>AAG	p.E801K	ATP12A_uc010aaa.2_Missense_Mutation_p.E807K	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	801	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GAACATTGCCGAGCTGTGCCC	0.483000													5	839					0	0	0.001168	0	0
KBTBD6	89890	broad.mit.edu	37	13	41706520	41706520	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:41706520G>A	uc001uxu.1	-	1	417	c.128C>T	c.(127-129)ACG>ATG	p.T43M	KBTBD6_uc010ace.1_Intron|KBTBD6_uc010tfe.1_Missense_Mutation_p.T43M|uc001uxv.1_5'Flank	NM_152903	NP_690867	Q86V97	KBTB6_HUMAN	kelch repeat and BTB (POZ) domain-containing 6	43							protein binding			ovary(1)|skin(1)	2		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;4.08e-09)|Epithelial(112;4.74e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000131)|GBM - Glioblastoma multiforme(144;0.000876)|BRCA - Breast invasive adenocarcinoma(63;0.0673)		AGAATGGGCCGTGTCCTTTAA	0.602000													7	717					0	0	0.004482	0	0
HNRNPC	3183	broad.mit.edu	37	14	21680019	21680019	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:21680019G>T	uc001vzy.2	-	7	870	c.626C>A	c.(625-627)TCT>TAT	p.S209Y	HNRNPC_uc001vzw.2_Missense_Mutation_p.S196Y|HNRNPC_uc001wad.2_Missense_Mutation_p.S129Y|HNRNPC_uc001vzx.2_Intron|HNRNPC_uc001vzz.2_Missense_Mutation_p.S196Y|HNRNPC_uc001waa.2_Missense_Mutation_p.S209Y|HNRNPC_uc010ail.2_Missense_Mutation_p.S209Y|HNRNPC_uc010tlq.1_RNA|HNRNPC_uc001wab.2_Missense_Mutation_p.S196Y|HNRNPC_uc001wac.2_Missense_Mutation_p.S153Y|HNRNPC_uc010tlr.1_Missense_Mutation_p.S74Y|HNRNPC_uc001waf.2_Missense_Mutation_p.S196Y|HNRNPC_uc001wae.2_Missense_Mutation_p.S196Y	NM_031314	NP_112604	P07910	HNRPC_HUMAN	heterogeneous nuclear ribonucleoprotein C	209	Asp/Glu-rich (acidic).					catalytic step 2 spliceosome|nucleoplasm	identical protein binding|nucleotide binding|RNA binding				0	all_cancers(95;0.00176)		Epithelial(56;1.08e-06)|all cancers(55;8.95e-06)	GBM - Glioblastoma multiforme(265;0.00783)		TTCCAGGAGAGAATCCACTTT	0.363000													17	770					5.03518e-11	7.20331e-11	0.007413	1	0
LRRC16B	90668	broad.mit.edu	37	14	24524519	24524519	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:24524519G>A	uc001wlj.2	+	8	762	c.605G>A	c.(604-606)CGA>CAA	p.R202Q		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	202										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		TTGGAGAGCCGGTAAGCAGAT	0.552000													5	516					0	0	0.001984	0	0
SYNE2	23224	broad.mit.edu	37	14	64580216	64580216	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:64580216A>G	uc001xgm.2	+	66	12997	c.12767A>G	c.(12766-12768)AAC>AGC	p.N4256S	SYNE2_uc001xgl.2_Missense_Mutation_p.N4256S|SYNE2_uc010apy.2_Missense_Mutation_p.N641S|SYNE2_uc010apz.1_Missense_Mutation_p.N148S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4256	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CAACAAGCCAACGTGGCAGTT	0.577000													5	132					0	0	0.001168	0	0
KCNK10	54207	broad.mit.edu	37	14	88707080	88707080	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:88707080A>G	uc001xwo.2	-	3	929	c.472T>C	c.(472-474)TTT>CTT	p.F158L	KCNK10_uc001xwm.2_Missense_Mutation_p.F163L|KCNK10_uc001xwn.2_Missense_Mutation_p.F163L	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	158					signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GCAAAGAAAAAGGCACTGCCG	0.483000													5	600					0	0	0.003080	0	0
MIR329-1	574408	broad.mit.edu	37	14	101493161	101493161	+	RNA	SNP	A	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:101493161A>T	hsa-mir-329-1|MI0001725	+			c.40A>T			MIR329-2_hsa-mir-329-2|MI0001726_5'Flank|MIR494_hsa-mir-494|MI0003134_5'Flank|uc010txm.1_5'Flank																	0						TGTTTCTTTAATGAGGACGAA	0.468000													6	636					0	0	0.004482	0	0
TRAF3	7187	broad.mit.edu	37	14	103371698	103371698	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:103371698G>A	uc001ymc.1	+	12	1637	c.1284G>A	c.(1282-1284)CGG>CGA	p.R428R	TRAF3_uc001yme.1_Silent_p.R403R|TRAF3_uc001ymd.1_Silent_p.R428R|TRAF3_uc010txy.1_Silent_p.R345R	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	428	MATH.				apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		ACAAGCGGCGGAAGCAGGAGG	0.567000													4	301					0	0	0.001984	0	0
ADSSL1	122622	broad.mit.edu	37	14	105201424	105201424	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:105201424G>C	uc001ypd.2	+	2	334	c.260G>C	c.(259-261)AGC>ACC	p.S87T	INF2_uc010tyi.1_Intron|ADSSL1_uc001ype.2_Missense_Mutation_p.S130T|ADSSL1_uc001ypf.2_RNA	NM_152328	NP_689541	Q8N142	PURA1_HUMAN	adenylosuccinate synthase like 1 isoform 2	87					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(1)|central_nervous_system(1)	2		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.18)	L-Aspartic Acid(DB00128)	CTGCTGCCCAGCGGCATCATC	0.627000													3	137					0	0	0.004672	0	0
GPR132	29933	broad.mit.edu	37	14	105518072	105518072	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:105518072G>A	uc001yqd.2	-	4	1301	c.402C>T	c.(400-402)TGC>TGT	p.C134C	GPR132_uc001yqc.2_5'UTR|GPR132_uc001yqe.2_Silent_p.C125C	NM_013345	NP_037477	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	134	Helical; Name=3; (Potential).				response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		AGGAGATGCAGCACAGGAAGA	0.632000													5	619					0	0	0.000602	0	0
CYP19A1	1588	broad.mit.edu	37	15	51504611	51504611	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:51504611T>C	uc001zyz.3	-	10	1420	c.1169A>G	c.(1168-1170)AAG>AGG	p.K390R	CYP19A1_uc001zza.3_Missense_Mutation_p.K390R|CYP19A1_uc001zzb.2_Missense_Mutation_p.K390R	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	390					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	GTTTGTCCCCTTTTTCACTGG	0.413000													5	729					0	0	0.001984	0	0
VPS13C	54832	broad.mit.edu	37	15	62283898	62283898	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:62283898T>C	uc002agz.2	-	17	1531	c.1457A>G	c.(1456-1458)AAG>AGG	p.K486R	VPS13C_uc002aha.2_Missense_Mutation_p.K443R|VPS13C_uc002ahb.1_Missense_Mutation_p.K486R|VPS13C_uc002ahc.1_Missense_Mutation_p.K443R	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	486					protein localization					ovary(2)	2						TTCTTCGTCCTTTTTCTTAGA	0.373000													6	810					0	0	0.001984	0	0
ZNF592	9640	broad.mit.edu	37	15	85345270	85345270	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:85345270C>A	uc002bld.2	+	11	3786	c.3450C>A	c.(3448-3450)AGC>AGA	p.S1150R	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	1150					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGGTGGACAGCTCCACAGCCC	0.527000													4	257					8.12818e-05	0.000106065	0.001984	1	0
FURIN	5045	broad.mit.edu	37	15	91422999	91422999	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:91422999G>A	uc002bpu.1	+	11	1469	c.1253G>A	c.(1252-1254)CGG>CAG	p.R418Q		NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	418					cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GGTGTGGGCCGGAAAGGTGAG	0.602000													7	400					0	0	0.003080	0	0
SV2B	9899	broad.mit.edu	37	15	91769810	91769810	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:91769810G>A	uc002bqv.2	+	1	708	c.317G>A	c.(316-318)CGC>CAC	p.R106H	SV2B_uc002bqt.2_Missense_Mutation_p.R106H|SV2B_uc010uqv.1_Intron|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	106	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GGCCATGGCCGCTTCCAGTGG	0.582000													4	231					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	15	102292811	102292811	+	Silent	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:102292811C>A	uc010usj.1	+	4	458	c.399C>A	c.(397-399)CGC>CGA	p.R133R	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CCTGCACTCGCGTGGGAACGA	0.607000													4	124					0.00116845	0.00147148	0.001168	1	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652000													15	82					0	0	0.001216	0	0
WDR90	197335	broad.mit.edu	37	16	716059	716059	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:716059C>T	uc002cii.1	+	36	4598	c.4544C>T	c.(4543-4545)ACG>ATG	p.T1515M	WDR90_uc002cij.1_Intron|WDR90_uc002cil.1_RNA|WDR90_uc002cin.1_Missense_Mutation_p.T130M|WDR90_uc010uul.1_Missense_Mutation_p.T114M|WDR90_uc002cio.1_Missense_Mutation_p.T114M|WDR90_uc010bqx.1_Missense_Mutation_p.T114M|RHOT2_uc010uum.1_5'Flank|RHOT2_uc002cip.2_5'Flank|RHOT2_uc002ciq.2_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	1515	WD 18.									ovary(1)	1		Hepatocellular(780;0.0218)				GTCTCCCGCACGGCCATGGAG	0.677000													8	411					0	0	0.006214	0	0
MLST8	64223	broad.mit.edu	37	16	2256104	2256104	+	Silent	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:2256104C>A	uc002coz.2	+	2	137	c.18C>A	c.(16-18)GGC>GGA	p.G6G	MLST8_uc002coy.2_Silent_p.G6G|MLST8_uc002cpa.2_5'UTR|MLST8_uc002cpb.2_Silent_p.G6G|MLST8_uc010uvx.1_5'UTR|MLST8_uc002cpc.2_Silent_p.G6G|MLST8_uc002cpd.2_5'UTR|MLST8_uc002cpe.2_Silent_p.G6G|MLST8_uc010uvy.1_Silent_p.G6G|MLST8_uc002cpg.2_Silent_p.G25G|MLST8_uc002cph.2_RNA|MLST8_uc002cpf.2_Silent_p.G6G	NM_022372	NP_071767	Q9BVC4	LST8_HUMAN	G protein beta subunit-like	6	WD 1.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|T cell costimulation	cytosol	protein binding				0						CCTCCCCAGGCACGGTGGGCA	0.632000													28	550					8.58068e-18	1.25966e-17	0.007291	1	0
AMDHD2	51005	broad.mit.edu	37	16	2579550	2579550	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:2579550G>A	uc002cqq.2	+	11	1313	c.1216G>A	c.(1216-1218)GCA>ACA	p.A406T	AMDHD2_uc002cqp.2_Missense_Mutation_p.A436T|AMDHD2_uc010uwc.1_Intron|AMDHD2_uc010uwd.1_Intron	NM_015944	NP_057028	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 1	406					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						GCAGGCGGACGCAGCTAGGCA	0.647000													5	419					0	0	0.000602	0	0
HCFC1R1	54985	broad.mit.edu	37	16	3073244	3073244	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:3073244G>A	uc002csx.1	-	4	404	c.271C>T	c.(271-273)CCC>TCC	p.P91S	HCFC1R1_uc002csy.1_Missense_Mutation_p.P91S|HCFC1R1_uc002csz.1_Missense_Mutation_p.P72S|THOC6_uc002ctb.2_5'Flank|THOC6_uc002ctd.2_5'Flank|THOC6_uc002ctc.2_5'Flank|THOC6_uc002cta.2_5'Flank	NM_001002018	NP_001002018	Q9NWW0	HPIP_HUMAN	host cell factor C1 regulator 1 (XPO1 dependant)	91						cytoplasm|nucleus					0						CTGAGTGGGGGCAGGGCTGGG	0.597000													5	287					0	0	0.001168	0	0
TAOK2	9344	broad.mit.edu	37	16	29997791	29997791	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:29997791C>T	uc002dva.1	+	16	2981	c.2198C>T	c.(2197-2199)GCG>GTG	p.A733V	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Missense_Mutation_p.A733V|TAOK2_uc002dvc.1_Missense_Mutation_p.A733V|TAOK2_uc010bzm.1_Missense_Mutation_p.A740V|TAOK2_uc002dvd.1_Missense_Mutation_p.A560V	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	733					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						CAGAAGCATGCGGCCCAGGTT	0.677000													5	527					0	0	0.006214	0	0
SRCAP	10847	broad.mit.edu	37	16	30723229	30723229	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:30723229A>G	uc002dze.1	+	12	1951	c.1566A>G	c.(1564-1566)GCA>GCG	p.A522A	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.A379A|SRCAP_uc010bzz.1_Silent_p.A92A	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	522	Glu-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GAAGTTCAGCATCAGAGGAAT	0.483000													9	289					0	0	0.006214	0	0
ZNF267	10308	broad.mit.edu	37	16	31927534	31927534	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:31927534C>G	uc002ecs.3	+	4	2173	c.1964C>G	c.(1963-1965)ACT>AGT	p.T655S		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	655					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						AGAAGTCATACTGGAGAGAGA	0.453000													7	449					0	0	0.003080	0	0
ZNF267	10308	broad.mit.edu	37	16	31927577	31927577	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:31927577C>T	uc002ecs.3	+	4	2216	c.2007C>T	c.(2005-2007)TTC>TTT	p.F669F		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	669	C2H2-type 13.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						GCAAAGCCTTCAACTCTAGGT	0.438000													8	448					0	0	0.001855	0	0
E2F4	1874	broad.mit.edu	37	16	67229832	67229832	+	Missense_Mutation	SNP	G	A	A	rs3830472		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:67229832G>A	uc002erz.2	+	7	1019	c.956G>A	c.(955-957)AGC>AAC	p.S319N		NM_001950	NP_001941	Q16254	E2F4_HUMAN	E2F transcription factor 4	319	Poly-Ser.		S -> SSSS.		G1 phase of mitotic cell cycle	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000697)|Epithelial(162;0.00303)|all cancers(182;0.0325)		agcagcagcagcaacagtaac	0.453000													8	395					0	0	0.000978	0	0
NUTF2	10204	broad.mit.edu	37	16	67899046	67899046	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:67899046C>A	uc002eup.2	+	2	112	c.13C>A	c.(13-15)CCA>ACA	p.P5T	NUTF2_uc010vkf.1_Missense_Mutation_p.P5T	NM_005796	NP_005787	P61970	NTF2_HUMAN	nuclear transport factor 2	5					protein transport	cytosol|nuclear pore	protein binding|transporter activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00443)|Epithelial(162;0.0199)|all cancers(182;0.129)		GGGAGACAAGCCAATTTGGGA	0.488000													11	223					3.07112e-06	4.10295e-06	0.000978	1	0
COG8	84342	broad.mit.edu	37	16	69373120	69373120	+	Silent	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:69373120G>T	uc002ewy.2	-	1	407	c.336C>A	c.(334-336)GGC>GGA	p.G112G	COG8_uc002ewz.3_Silent_p.G112G|NIP7_uc002exa.2_5'Flank|NIP7_uc002exb.2_5'Flank	NM_032382	NP_115758	Q96MW5	COG8_HUMAN	component of oligomeric golgi complex 8	112					protein transport	Golgi membrane|Golgi transport complex				ovary(1)	1						CGAGCAGGCGGCCGAGCGACG	0.617000													12	219					7.03913e-09	9.84698e-09	0.001368	1	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333000													3	36					0	0	0.004672	0	0
LOC283922	283922	broad.mit.edu	37	16	74372765	74372765	+	Missense_Mutation	SNP	T	C	C	rs2549261	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:74372765T>C	uc002fcr.2	-	9	1540	c.194A>G	c.(193-195)CAC>CGC	p.H65R	LOC283922_uc010vms.1_RNA					Homo sapiens cDNA FLJ39449 fis, clone PROST2008360, highly similar to Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit (PDPR), mRNA.												0						GAAGTCCCAGTGGGGAACCTT	0.502000													5	205					0	0	0.001168	0	0
BCAR1	9564	broad.mit.edu	37	16	75276756	75276756	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:75276756G>A	uc002fdv.2	-	2	368	c.245C>T	c.(244-246)CCG>CTG	p.P82L	BCAR1_uc010cgu.2_Missense_Mutation_p.P53L|BCAR1_uc010vna.1_Missense_Mutation_p.P80L|BCAR1_uc010vnb.1_Missense_Mutation_p.P128L|BCAR1_uc002fdw.2_Missense_Mutation_p.P82L|BCAR1_uc010vnc.1_Intron|BCAR1_uc010vnd.1_Missense_Mutation_p.P100L|BCAR1_uc002fdx.2_Missense_Mutation_p.P100L	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	82	Pro-rich.				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGGCTGGGCCGGGGTGGCGGG	0.687000													4	189					0	0	0.000602	0	0
CA5A	763	broad.mit.edu	37	16	87938413	87938413	+	Silent	SNP	G	A	A	rs143279008	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:87938413G>A	uc002fkn.1	-	3	494	c.438C>T	c.(436-438)GAC>GAT	p.D146D		NM_001739	NP_001730	P35218	CAH5A_HUMAN	carbonic anhydrase VA, mitochondrial precursor	146					one-carbon metabolic process	mitochondrial matrix	carbonate dehydratase activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0513)		ACGCGTGGCCGTCCACTGTGT	0.557000													8	608					0	0	0.006214	0	0
SPG7	6687	broad.mit.edu	37	16	89597166	89597166	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:89597166G>A	uc002fnj.2	+	7	958	c.937G>A	c.(937-939)GGA>AGA	p.G313R	SPG7_uc002fni.2_Missense_Mutation_p.G313R	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	313	Mitochondrial matrix (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		AGACGTGGCAGGAATGCACGA	0.532000													4	460					0	0	0.000248	0	0
PRDM7	11105	broad.mit.edu	37	16	90126823	90126823	+	Missense_Mutation	SNP	T	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:90126823T>G	uc010cje.2	-	9	1179	c.1159A>C	c.(1159-1161)ATG>CTG	p.M387L	PRDM7_uc002fqo.2_Intron|PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjg.1_Missense_Mutation_p.M181L	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	387						chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		CTCATCCCCATACCAGACCAG	0.522000													8	453					0	0	0.000673	0	0
PRDM7	11105	broad.mit.edu	37	16	90126912	90126912	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:90126912G>T	uc010cje.2	-	9	1090	c.1070C>A	c.(1069-1071)TCT>TAT	p.S357Y	PRDM7_uc002fqo.2_Intron|PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjg.1_Missense_Mutation_p.S151Y	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	357	SET.			S -> Y (in Ref. 2; AAF78084).		chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		CTCATCCCCAGACCAGACCAG	0.532000													7	406					0.00307968	0.00383064	0.003080	1	0
SARM1	23098	broad.mit.edu	37	17	26684698	26684698	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:26684698C>A	uc010wah.1	+	1	12	c.5C>A	c.(4-6)GCG>GAG	p.A2E	POLDIP2_uc002haz.2_5'Flank|POLDIP2_uc010wag.1_5'Flank|TMEM199_uc002hba.2_Missense_Mutation_p.A2E	NM_152464	NP_689677	Q6SZW1	SARM1_HUMAN	transmembrane protein 199	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CTAGATATGGCGTCCTCTTTG	0.677000													22	443					6.33239e-15	9.24236e-15	0.001523	1	0
SGK494	124923	broad.mit.edu	37	17	26938643	26938643	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:26938643G>A	uc002hbr.1	-	9	785	c.753C>T	c.(751-753)TCC>TCT	p.S251S	SGK494_uc010waq.1_Intron|SGK494_uc010war.1_Intron|uc010crq.1_5'Flank|uc002hbs.1_5'Flank	NM_144610	NP_653211			uncharacterized serine/threonine-protein kinase												0						GCACGTGGCGGGACAGACCAA	0.512000													5	617					0	0	0.001168	0	0
ATAD5	79915	broad.mit.edu	37	17	29161380	29161380	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:29161380G>A	uc002hfs.1	+	2	627	c.281G>A	c.(280-282)AGC>AAC	p.S94N	ATAD5_uc002hft.1_5'UTR	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	94					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				CCTGTTGACAGCAACAAAGAC	0.328000													5	438					0	0	0.000602	0	0
DHX58	79132	broad.mit.edu	37	17	40262918	40262918	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:40262918G>A	uc002hyw.3	-	5	607	c.384C>T	c.(382-384)ATC>ATT	p.I128I	DHX58_uc002hyv.3_Intron|DHX58_uc010wgf.1_Silent_p.I121I	NM_024119	NP_077024	Q96C10	DHX58_HUMAN	RNA helicase LGP2	128	Helicase ATP-binding.				innate immune response	cytoplasm	ATP binding|DNA binding|helicase activity|protein binding|RNA binding|zinc ion binding				0		all_cancers(22;9.73e-07)|all_epithelial(22;3.58e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CATCCACCACGATCAGGGAGA	0.542000													17	533					0	0	0.001523	0	0
HOXB4	3214	broad.mit.edu	37	17	46654279	46654279	+	Silent	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:46654279C>A	uc002inp.2	-	2	623	c.561G>T	c.(559-561)CTG>CTT	p.L187L	HOXB3_uc010wlm.1_Intron|HOXB3_uc010dbf.2_Intron|HOXB3_uc010dbg.2_Intron|HOXB3_uc002ino.2_5'Flank|HOXB3_uc010wlk.1_5'Flank|HOXB3_uc010wll.1_Intron	NM_024015	NP_076920	P17483	HXB4_HUMAN	homeobox B4	187	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCGCCGTGTCAGGTAGCGGT	0.622000													5	644					0.00448238	0.00553448	0.004482	1	0
CCDC40	55036	broad.mit.edu	37	17	78039379	78039379	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:78039379G>A	uc010dht.2	+	10	1563	c.1536G>A	c.(1534-1536)GCG>GCA	p.A512A	CCDC40_uc010wub.1_Intron|CCDC40_uc002jxm.3_Silent_p.A295A	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	512					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GCGACGAGGCGCACAGGGCGG	0.692000													5	371					0	0	0.000602	0	0
NPLOC4	55666	broad.mit.edu	37	17	79556050	79556050	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:79556050G>A	uc002kat.3	-	12	1383	c.1201C>T	c.(1201-1203)CTG>TTG	p.L401L	NPLOC4_uc002kau.3_Silent_p.L401L|NPLOC4_uc010wur.1_Silent_p.L240L	NM_017921	NP_060391	Q8TAT6	NPL4_HUMAN	nuclear protein localization 4	401					cellular membrane fusion|ER-associated protein catabolic process|Golgi organization	cytosol|endoplasmic reticulum|nuclear outer membrane-endoplasmic reticulum membrane network|nucleus	zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			TTGCATGGCAGCAAACACTCA	0.498000													5	349					0	0	0.000602	0	0
LAMA1	284217	broad.mit.edu	37	18	7080453	7080453	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr18:7080453A>G	uc002knm.2	-	2	159	c.65T>C	c.(64-66)CTG>CCG	p.L22P	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	22	Laminin N-terminal.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGCAGGAAACAGGCCTGAAAG	0.473000													3	149					0	0	0.000248	0	0
NDUFV2	4729	broad.mit.edu	37	18	9122540	9122540	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr18:9122540G>A	uc002knu.2	+	5	397	c.330G>A	c.(328-330)ATG>ATA	p.M110I		NM_021074	NP_066552	P19404	NDUV2_HUMAN	NADH dehydrogenase ubiquinone flavoprotein 2	110					cardiac muscle tissue development|mitochondrial electron transport, NADH to ubiquinone|nervous system development|transport	mitochondrial respiratory chain complex I	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity			ovary(1)	1					NADH(DB00157)	TACCTCCAATGAGAGTATATG	0.328000													8	693					0	0	0.006122	0	0
POTEC	388468	broad.mit.edu	37	18	14513734	14513734	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr18:14513734C>T	uc010dln.2	-	10	1914	c.1460G>A	c.(1459-1461)GGA>GAA	p.G487E	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	487										skin(3)	3						TTGTGATATTCCAGTGTTCTG	0.323000													7	302					0	0	0.001368	0	0
GALNT1	2589	broad.mit.edu	37	18	33269160	33269160	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr18:33269160T>C	uc010dmu.2	+	7	937	c.884T>C	c.(883-885)CTT>CCT	p.L295P	GALNT1_uc002kyz.3_Missense_Mutation_p.L235P|GALNT1_uc002kzb.2_Missense_Mutation_p.L295P	NM_020474	NP_065207	Q10472	GALT1_HUMAN	polypeptide N-acetylgalactosaminyltransferase 1	295	Lumenal (Potential).|Catalytic subdomain B.				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GCAGGAGGCCTTTTTTCAATA	0.338000													4	521					0	0	0.000602	0	0
C19orf34	255193	broad.mit.edu	37	19	1953899	1953899	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:1953899C>A	uc002lum.2	-	2	593	c.136G>T	c.(136-138)GCC>TCC	p.A46S	CSNK1G2_uc002lul.3_Intron	NM_152771	NP_689984			chromosome 19 open reading frame 34												0		Ovarian(11;0.000137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTCTCAGAGGCCGGCTGTCCT	0.637000													13	279					1.05317e-09	1.49396e-09	0.002450	1	0
AP3D1	8943	broad.mit.edu	37	19	2110781	2110781	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:2110781G>A	uc002luz.2	-	25	3137	c.2914C>T	c.(2914-2916)CTC>TTC	p.L972F	AP3D1_uc010dsv.2_Missense_Mutation_p.L62F|AP3D1_uc002luy.2_Missense_Mutation_p.L931F|AP3D1_uc002lva.2_Missense_Mutation_p.L1034F	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	972					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGCATTGAGTGAGTCCAGC	0.667000													8	195					0	0	0.003080	0	0
ZNF57	126295	broad.mit.edu	37	19	2917873	2917873	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:2917873G>A	uc002lwr.2	+	4	1402	c.1254G>A	c.(1252-1254)AAG>AAA	p.K418K	ZNF57_uc010xha.1_Silent_p.K386K	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	418					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGAGAGAAGCCTTATGAGT	0.438000													7	413					0	0	0.006214	0	0
ZNF57	126295	broad.mit.edu	37	19	2917961	2917961	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:2917961C>T	uc002lwr.2	+	4	1490	c.1342C>T	c.(1342-1344)CAT>TAT	p.H448Y	ZNF57_uc010xha.1_Missense_Mutation_p.H416Y	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	448	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAGCAGCTCCATAAATGTGA	0.443000													7	466					0	0	0.006214	0	0
ZNF57	126295	broad.mit.edu	37	19	2917975	2917975	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:2917975C>A	uc002lwr.2	+	4	1504	c.1356C>A	c.(1354-1356)CAC>CAA	p.H452Q	ZNF57_uc010xha.1_Missense_Mutation_p.H420Q	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	452	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AATGTGAACACTGTGGGAAGG	0.428000													7	479					5.68852e-11	8.11499e-11	0.004482	1	0
TUBB4	10382	broad.mit.edu	37	19	6495394	6495394	+	Silent	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:6495394C>A	uc002mfg.1	-	4	1223	c.1116G>T	c.(1114-1116)ACG>ACT	p.T372T	TUBB4_uc002mff.1_Silent_p.T300T|MIR220B_hsa-mir-220b|MI0005529_5'Flank	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	372					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		CCTGGATGGCCGTGCTGTTGC	0.632000													6	841					8.12818e-05	0.000106065	0.001984	1	0
C3	718	broad.mit.edu	37	19	6677992	6677992	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:6677992C>A	uc002mfm.2	-	41	4955	c.4893G>T	c.(4891-4893)TGG>TGT	p.W1631C	C3_uc002mfl.2_Missense_Mutation_p.W367C	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1631	NTR.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CCTCCTCGGGCCAGTGCTCCA	0.612000													17	484					3.45872e-05	4.59645e-05	0.004007	1	0
CD209	30835	broad.mit.edu	37	19	7810492	7810492	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:7810492G>A	uc002mht.2	-	4	727	c.660C>T	c.(658-660)ACC>ACT	p.T220T	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.T196T|CD209_uc002mhr.2_Silent_p.T196T|CD209_uc002mhs.2_Intron|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Silent_p.T220T|CD209_uc002mhq.2_Silent_p.T220T|CD209_uc002mhv.2_Silent_p.T196T|CD209_uc002mhx.2_Silent_p.T176T|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	220	Extracellular (Probable).|6.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTTCAGCCGGGTCAGCTCCT	0.567000													6	411					0	0	0.006214	0	0
CD209	30835	broad.mit.edu	37	19	7810768	7810768	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:7810768G>A	uc002mht.2	-	4	451	c.384C>T	c.(382-384)ACC>ACT	p.T128T	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.T104T|CD209_uc002mhr.2_Silent_p.T104T|CD209_uc002mhs.2_Silent_p.T104T|CD209_uc002mhu.2_Silent_p.T128T|CD209_uc010dvq.2_Silent_p.T128T|CD209_uc002mhq.2_Silent_p.T128T|CD209_uc002mhv.2_Silent_p.T104T|CD209_uc002mhx.2_Silent_p.T84T|CD209_uc002mhw.2_Silent_p.T84T|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	128	Extracellular (Probable).|2.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTTCAGCCGGGTCAGCTCCT	0.572000													6	815					0	0	0.002450	0	0
CD209	30835	broad.mit.edu	37	19	7810835	7810835	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:7810835T>C	uc002mht.2	-	4	384	c.317A>G	c.(316-318)CAG>CGG	p.Q106R	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.Q82R|CD209_uc002mhr.2_Missense_Mutation_p.Q82R|CD209_uc002mhs.2_Missense_Mutation_p.Q82R|CD209_uc002mhu.2_Missense_Mutation_p.Q106R|CD209_uc010dvq.2_Missense_Mutation_p.Q106R|CD209_uc002mhq.2_Missense_Mutation_p.Q106R|CD209_uc002mhv.2_Missense_Mutation_p.Q82R|CD209_uc002mhx.2_Missense_Mutation_p.Q62R|CD209_uc002mhw.2_Missense_Mutation_p.Q62R|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	106	1.|Extracellular (Probable).|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						AGCCTTCAGCTGGGTCAGCTC	0.562000													7	761					0	0	0.002450	0	0
FBN3	84467	broad.mit.edu	37	19	8201300	8201300	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:8201300G>A	uc002mjf.2	-	10	1338	c.1317C>T	c.(1315-1317)TAC>TAT	p.Y439Y		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	439	EGF-like 3.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGTCCTGGGTGTAGCCCACGT	0.647000													7	428					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9048764	9048764	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:9048764A>G	uc002mkp.2	-	5	33071	c.32867T>C	c.(32866-32868)CTT>CCT	p.L10956P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10958	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTTCACCAAGAGAAAAAGT	0.498000													8	485					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9048771	9048771	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:9048771A>G	uc002mkp.2	-	5	33064	c.32860T>C	c.(32860-32862)TTT>CTT	p.F10954L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10956	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAAGAGAAAAAGTCAGAATT	0.483000													7	484					0	0	0.004482	0	0
MUC16	94025	broad.mit.edu	37	19	9090831	9090831	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:9090831A>G	uc002mkp.2	-	1	1188	c.984T>C	c.(982-984)CCT>CCC	p.P328P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	328	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATGGAAAAAGGGATAGCTG	0.522000													7	370					0	0	0.001984	0	0
KEAP1	9817	broad.mit.edu	37	19	10597416	10597416	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:10597416C>A	uc002moq.1	-	6	1943	c.1787G>T	c.(1786-1788)CGA>CTA	p.R596L	KEAP1_uc002mop.1_Missense_Mutation_p.R255L|KEAP1_uc002mor.1_Missense_Mutation_p.R596L	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	596	Kelch 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			CGATGTCATTCGGGTCACCTC	0.572000													8	537					0.00621372	0.00757953	0.006214	1	0
CCDC159	126075	broad.mit.edu	37	19	11464523	11464523	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:11464523G>T	uc010xlw.1	+	10	1073	c.994G>T	c.(994-996)GCC>TCC	p.A332S	CCDC159_uc010xlt.1_Missense_Mutation_p.A249S|LPPR2_uc002mre.1_5'Flank|LPPR2_uc002mrf.1_5'Flank	NM_001080503	NP_001073972	P0C7I6	CC159_HUMAN	coiled-coil domain-containing-like	364										ovary(1)	1						GTGCTCGGGGGCCTGTCCCAA	0.587000													6	37					0.00307968	0.00383064	0.003080	1	0
ELAVL3	1995	broad.mit.edu	37	19	11565684	11565684	+	Missense_Mutation	SNP	G	A	A	rs143463189		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:11565684G>A	uc002mry.1	-	7	1141	c.761C>T	c.(760-762)TCG>TTG	p.S254L	ELAVL3_uc002mrx.1_Intron	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	254					cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						GGCGATGAGCGACAGGGGACT	0.562000													11	858					0	0	0.004007	0	0
ZNF878	729747	broad.mit.edu	37	19	12155673	12155673	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:12155673A>C	uc002mta.1	-	5	684	c.684T>G	c.(682-684)AGT>AGG	p.S228R		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	181	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AACTGGGAAAACTGAATGCTT	0.403000													7	878					0	0	0.000673	0	0
ZNF844	284391	broad.mit.edu	37	19	12187475	12187475	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:12187475C>G	uc002mtb.2	+	4	1683	c.1540C>G	c.(1540-1542)CAT>GAT	p.H514D	ZNF844_uc010dym.1_Missense_Mutation_p.H357D	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCACATCTGCCTCA	0.408000													6	301					0	0	0.004482	0	0
ZNF563	147837	broad.mit.edu	37	19	12429722	12429722	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:12429722T>C	uc002mtp.2	-	4	1355	c.1117A>G	c.(1117-1119)ACG>GCG	p.T373A		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGATAACGTTTTCCCACAC	0.413000													12	823					0	0	0.002780	0	0
ZNF442	79973	broad.mit.edu	37	19	12462842	12462842	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:12462842T>C	uc002mtr.1	-	5	859	c.248A>G	c.(247-249)AAT>AGT	p.N83S	ZNF442_uc010xmk.1_Missense_Mutation_p.N14S	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	83	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						CCTCCTGGGATTTCTGTGCTG	0.358000													12	456					0	0	0.004007	0	0
ZNF709	163051	broad.mit.edu	37	19	12575380	12575380	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:12575380C>T	uc002mtv.3	-	4	1517	c.1356G>A	c.(1354-1356)CAG>CAA	p.Q452Q	ZNF709_uc002mtw.3_Silent_p.Q420Q|ZNF709_uc002mtx.3_Silent_p.Q452Q	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	452	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTTACCACACTGTTTACATT	0.403000													11	814					0	0	0.004656	0	0
ZNF564	163050	broad.mit.edu	37	19	12637723	12637723	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:12637723C>T	uc002mty.2	-	4	1409	c.1199G>A	c.(1198-1200)AGA>AAA	p.R400K	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	400	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GTCAAAGGCTCTACCACATAC	0.433000													10	830					0	0	0.007413	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13941595	13941595	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:13941595G>T	uc002mxh.1	+	13	2890	c.2701G>T	c.(2701-2703)GCC>TCC	p.A901S	ZSWIM4_uc010xng.1_Missense_Mutation_p.A824S	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	901							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			GGCACGCCGGGCCGCCAAGCC	0.687000													10	123					1.22574e-08	1.70523e-08	0.002299	1	0
TECR	9524	broad.mit.edu	37	19	14674822	14674822	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:14674822T>C	uc002mza.2	+	6	423	c.296T>C	c.(295-297)CTT>CCT	p.L99P	TECR_uc002mzb.2_Missense_Mutation_p.L114P|TECR_uc010xns.1_5'UTR|TECR_uc002mzc.2_5'UTR|TECR_uc002mzd.2_Missense_Mutation_p.L99P|TECR_uc002mze.2_5'Flank|TECR_uc002mzf.1_5'Flank	NM_138501	NP_612510	Q9NZ01	TECR_HUMAN	glycoprotein, synaptic 2	99	Helical; (Potential).				fatty acid elongation|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	trans-2-enoyl-CoA reductase (NADPH) activity|very long-chain-acyl-CoA dehydrogenase activity				0						GCGGGGCCCCTTTTCATCTAC	0.552000													5	842					0	0	0.001168	0	0
CYP4F11	57834	broad.mit.edu	37	19	16024638	16024638	+	Silent	SNP	C	T	T	rs143714626	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:16024638C>T	uc002nbu.2	-	13	1515	c.1479G>A	c.(1477-1479)CCG>CCA	p.P493P	CYP4F11_uc010eab.1_3'UTR|CYP4F11_uc002nbt.2_Silent_p.P493P	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	493					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CAGTGTGGGTCGGCAGGATGC	0.627000													5	175					0	0	0.001984	0	0
RAB3A	5864	broad.mit.edu	37	19	18313542	18313542	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:18313542G>A	uc002nie.2	-	2	178	c.9C>T	c.(7-9)TCC>TCT	p.S3S		NM_002866	NP_002857	P20336	RAB3A_HUMAN	RAB3A, member RAS oncogene family	3					glutamate secretion|protein transport|small GTPase mediated signal transduction	clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|plasma membrane|synaptic vesicle	GTP binding|GTPase activity				0						AGTCTGTGGCGGATGCCATCT	0.577000											OREG0025360	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	445					0	0	0.000602	0	0
ZNF626	199777	broad.mit.edu	37	19	20808090	20808090	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:20808090C>T	uc002npb.1	-	4	743	c.593G>A	c.(592-594)GGG>GAG	p.G198E	ZNF626_uc002npc.1_Missense_Mutation_p.G122E	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	198					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GTAGGGTTTCCCTCCAGTATG	0.363000													7	342					0	0	0.004482	0	0
ZNF429	353088	broad.mit.edu	37	19	21720664	21720664	+	Silent	SNP	T	C	C	rs112717187		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:21720664T>C	uc002nqd.1	+	4	1946	c.1809T>C	c.(1807-1809)AAT>AAC	p.N603N	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	603	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AAGCTTTTAATCGGTCCTCAA	0.373000													8	434					0	0	0.007413	0	0
ZNF208	7757	broad.mit.edu	37	19	22155282	22155282	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:22155282T>C	uc002nqp.2	-	5	2403	c.2254A>G	c.(2254-2256)AAG>GAG	p.K752E	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAATTACCTTATGTTTAGTA	0.373000													6	445					0	0	0.006214	0	0
ZNF98	148198	broad.mit.edu	37	19	22574657	22574657	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:22574657T>C	uc002nqt.2	-	4	1502	c.1380A>G	c.(1378-1380)AAA>AAG	p.K460K		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	460					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				ATTTGTAGGGTTTCTCTCCAG	0.373000													4	156					0	0	0.001168	0	0
ZNF99	7652	broad.mit.edu	37	19	22941129	22941129	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:22941129T>C	uc010xrh.1	-	5	1309	c.1309A>G	c.(1309-1311)AAG>GAG	p.K437E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGAATTATCTTATGTTTTCTA	0.333000													4	402					0	0	0.000248	0	0
ZNF91	7644	broad.mit.edu	37	19	23544808	23544808	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:23544808C>T	uc002nre.2	-	4	1086	c.973G>A	c.(973-975)GAA>AAA	p.E325K	ZNF91_uc010xrj.1_Missense_Mutation_p.E293K	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	325	C2H2-type 7.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CCACATTCTTCACATTTGTAG	0.388000													5	741					0	0	0.001168	0	0
ZNF91	7644	broad.mit.edu	37	19	23544867	23544867	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:23544867T>C	uc002nre.2	-	4	1027	c.914A>G	c.(913-915)CAT>CGT	p.H305R	ZNF91_uc010xrj.1_Missense_Mutation_p.H273R	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	305	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAATGGCTAAAAGC	0.413000													18	756					0	0	0.002299	0	0
ZNF681	148213	broad.mit.edu	37	19	23926839	23926839	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:23926839A>G	uc002nrk.3	-	4	1655	c.1513T>C	c.(1513-1515)TCC>CCC	p.S505P	ZNF681_uc002nrl.3_Missense_Mutation_p.S436P|ZNF681_uc002nrj.3_Missense_Mutation_p.S436P	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	505					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CATTTGTAGGATTTCTCTCCA	0.373000													10	511					0	0	0.002450	0	0
ZNF681	148213	broad.mit.edu	37	19	23926861	23926861	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:23926861C>T	uc002nrk.3	-	4	1633	c.1491G>A	c.(1489-1491)AAG>AAA	p.K497K	ZNF681_uc002nrl.3_Silent_p.K428K|ZNF681_uc002nrj.3_Silent_p.K428K	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	497	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TATGAATTCTCTTATGTGTAG	0.358000													8	565					0	0	0.000673	0	0
CAPN12	147968	broad.mit.edu	37	19	39228954	39228954	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:39228954G>A	uc002ojd.1	-	8	1233	c.924C>T	c.(922-924)TGC>TGT	p.C308C	CAPN12_uc010egd.1_5'Flank|CAPN12_uc002ojc.1_5'Flank	NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	308	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			GGGCATCGCGGCACTCGGTGG	0.662000													4	245					0	0	0.003080	0	0
AKT2	208	broad.mit.edu	37	19	40741937	40741937	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:40741937G>A	uc002onf.2	-	11	1297	c.1035C>T	c.(1033-1035)TGC>TGT	p.C345C	AKT2_uc010egs.2_Silent_p.C302C|AKT2_uc010egt.2_Silent_p.C283C|AKT2_uc010xvj.1_Silent_p.C283C|AKT2_uc010egu.1_Silent_p.C283C|AKT2_uc002one.2_Silent_p.C241C	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	345	Protein kinase.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			GCAGGCGGCCGCACATCATCT	0.622000			A		ovarian|pancreatic 								4	381					0	0	0.000602	0	0
PRX	57716	broad.mit.edu	37	19	40902612	40902612	+	Silent	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:40902612C>G	uc002onr.2	-	7	1916	c.1647G>C	c.(1645-1647)CCG>CCC	p.P549P	PRX_uc002onq.2_Silent_p.P410P|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	549	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].|18.				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding	p.P549P(1)		ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGACACTTTCGGCAGCTGTA	0.577000													8	836					0	0	0.004482	0	0
PRX	57716	broad.mit.edu	37	19	40902620	40902620	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:40902620G>C	uc002onr.2	-	7	1908	c.1639C>G	c.(1639-1641)CAG>GAG	p.Q547E	PRX_uc002onq.2_Missense_Mutation_p.Q408E|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	547	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].|18.				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TTCGGCAGCTGTACCTCTGGA	0.587000													9	834					0	0	0.000673	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:41119074G>T	uc002ooh.1	+	19	2604	c.2604G>T	c.(2602-2604)GCG>GCT	p.A868A	LTBP4_uc002oog.1_Silent_p.A831A|LTBP4_uc002ooi.1_Silent_p.A801A|LTBP4_uc002ooj.1_5'UTR|LTBP4_uc010xvo.1_Silent_p.A156A|LTBP4_uc010ehb.1_Silent_p.A88A|LTBP4_uc002ook.1_Silent_p.A88A|LTBP4_uc002ool.1_5'Flank|LTBP4_uc002oom.1_5'Flank|LTBP4_uc010xvp.1_5'Flank	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	868	EGF-like 9; calcium-binding (Potential).|Cys-rich.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GCTACCGGGCGCCGTCGGGTC	0.692000													8	17					3.09899e-07	4.20696e-07	0.004482	1	0
IRF2BP1	26145	broad.mit.edu	37	19	46387657	46387657	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:46387657G>A	uc002pds.1	-	1	1720	c.1376C>T	c.(1375-1377)ACG>ATG	p.T459M		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	459					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		CGGCTGGGCCGTGGAGGAGGC	0.721000													3	63					0	0	0.000248	0	0
DHX34	9704	broad.mit.edu	37	19	47856601	47856601	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:47856601G>A	uc010xyn.1	+	2	655	c.314G>A	c.(313-315)CGC>CAC	p.R105H	DHX34_uc010elc.1_Missense_Mutation_p.R105H	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	105						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		CCACGTTACCGCATCAACCTC	0.627000													6	708					0	0	0.004482	0	0
FLT3LG	2323	broad.mit.edu	37	19	49983619	49983619	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:49983619G>A	uc010yau.1	+	7	636	c.546G>A	c.(544-546)CCG>CCA	p.P182P	FLT3LG_uc002pnv.2_Silent_p.P100P|FLT3LG_uc002pnw.2_Silent_p.P100P|FLT3LG_uc002pnu.2_Silent_p.P182P|FLT3LG_uc002pnx.2_Silent_p.P182P|FLT3LG_uc010yav.1_Silent_p.P100P	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	182	Extracellular (Potential).				positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CGACAGCCCCGCAGCCCCCTC	0.642000													4	138					0	0	0.000602	0	0
IRF3	3661	broad.mit.edu	37	19	50162998	50162998	+	Silent	SNP	G	A	A	rs147048613		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:50162998G>A	uc010end.1	-	8	1573	c.1191C>T	c.(1189-1191)AAC>AAT	p.N397N	IRF3_uc002pos.1_RNA|IRF3_uc002pot.1_Silent_p.N270N|IRF3_uc002pox.1_Nonsense_Mutation_p.Q359*|IRF3_uc002poy.1_Silent_p.N397N|IRF3_uc002pou.2_Silent_p.N397N|IRF3_uc002pov.2_Silent_p.N251N|IRF3_uc002pow.2_Nonsense_Mutation_p.Q403*	NM_001571	NP_001562	Q14653	IRF3_HUMAN	interferon regulatory factor 3	397				SNSHPLSLTS->DNDHPLDLDD: Acts as a constitutively activated IRF3.|SNS->ANA: Complete loss of viral infection induced phosphorylation.|SNSHPLSLTS->ANAHPLALAA: Complete loss of viral infection induced phosphorylation.	interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.02)		GTGGGTGGCTGTTGGAAATGT	0.627000													5	462					0	0	0.001168	0	0
ZNF836	162962	broad.mit.edu	37	19	52659056	52659056	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:52659056T>A	uc010ydi.1	-	5	2254	c.1880A>T	c.(1879-1881)AAT>ATT	p.N627I	ZNF836_uc010ydj.1_Missense_Mutation_p.N627I	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	627	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCTTATGATTTGAAAGGTT	0.408000													8	758					0	0	0.002780	0	0
ZNF836	162962	broad.mit.edu	37	19	52659075	52659075	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:52659075C>A	uc010ydi.1	-	5	2235	c.1861G>T	c.(1861-1863)GAC>TAC	p.D621Y	ZNF836_uc010ydj.1_Missense_Mutation_p.D621Y	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	621	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTCCACTGTCATTGAAGACC	0.423000													9	771					0.000229342	0.000294701	0.001882	1	0
ZNF578	147660	broad.mit.edu	37	19	53014565	53014565	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:53014565G>A	uc002pzp.3	+	6	1175	c.931G>A	c.(931-933)GGT>AGT	p.G311S		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	86					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		ATGTCACACTGGTGAGAAACC	0.418000													7	504					0	0	0.006214	0	0
ZNF816A	125893	broad.mit.edu	37	19	53454058	53454058	+	Missense_Mutation	SNP	C	G	G	rs141188407		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:53454058C>G	uc002qal.1	-	5	1271	c.970G>C	c.(970-972)GAG>CAG	p.E324Q	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.E308Q	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	324	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GATGACTTCTCACTGAAGGTC	0.443000													6	883					0	0	0.006122	0	0
ZNF845	91664	broad.mit.edu	37	19	53855197	53855197	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:53855197G>A	uc010ydv.1	+	4	1386	c.1269G>A	c.(1267-1269)ATG>ATA	p.M423I	ZNF845_uc010ydw.1_Missense_Mutation_p.M423I	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	423	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCAGTCAGATGTCATCCCTTG	0.413000													12	774					0	0	0.003163	0	0
ZNF761	388561	broad.mit.edu	37	19	53958983	53958983	+	Missense_Mutation	SNP	A	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:53958983A>C	uc010eqp.2	+	7	1680	c.1222A>C	c.(1222-1224)AAA>CAA	p.K408Q	ZNF761_uc010ydy.1_Missense_Mutation_p.K354Q|ZNF761_uc002qbt.1_Missense_Mutation_p.K354Q	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	408					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TACTGGAGAGAAACCTTACAA	0.368000													6	742					0	0	0.003080	0	0
ZNF761	388561	broad.mit.edu	37	19	53959151	53959151	+	Missense_Mutation	SNP	C	A	A	rs146851069		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:53959151C>A	uc010eqp.2	+	7	1848	c.1390C>A	c.(1390-1392)CAA>AAA	p.Q464K	ZNF761_uc010ydy.1_Missense_Mutation_p.Q410K|ZNF761_uc002qbt.1_Missense_Mutation_p.Q410K	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	464					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TACTGGAGAGCAACCTTACAA	0.393000													8	539					1.36491e-13	1.98069e-13	0.001855	1	0
NLRP12	91662	broad.mit.edu	37	19	54313383	54313383	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:54313383G>A	uc002qch.3	-	3	1750	c.1530C>T	c.(1528-1530)TAC>TAT	p.Y510Y	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.Y510Y|NLRP12_uc002qcj.3_Silent_p.Y510Y|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.Y510Y	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	510	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GGATGAAGCTGTAGTACCTCT	0.557000													6	701					0	0	0.001984	0	0
ZNF749	388567	broad.mit.edu	37	19	57955884	57955885	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:57955884_57955885CC>TG	uc002qoq.2	+	3	1622_1623	c.1368_1369CC>TG	c.(1366-1371)CACCAG>CATGAG	p.Q457E	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	457	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		TAGTTCAGCACCAGAAAATCCA	0.421000													5	379					0	0	0.004672	0	0
ZNF134	7693	broad.mit.edu	37	19	58131705	58131705	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:58131705A>G	uc002qpn.2	+	3	317	c.218A>G	c.(217-219)CAT>CGT	p.H73R	ZNF134_uc002qpo.2_5'UTR|ZNF211_uc010yhb.1_5'Flank	NM_003435	NP_003426	P52741	ZN134_HUMAN	zinc finger protein 134	73						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0265)		GGTACACACCATGGACTGAAA	0.488000													6	547					0	0	0.001168	0	0
ZNF551	90233	broad.mit.edu	37	19	58199410	58199410	+	Silent	SNP	T	C	C	rs143357923		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:58199410T>C	uc002qpw.3	+	3	1942	c.1719T>C	c.(1717-1719)TGT>TGC	p.C573C	ZNF551_uc002qpv.3_Silent_p.C516C|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	589	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTTATGAATGTAGTGAATGTG	0.443000													7	639					0	0	0.004990	0	0
ZNF776	284309	broad.mit.edu	37	19	58265885	58265885	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:58265885G>A	uc002qpx.2	+	3	1610	c.1387G>A	c.(1387-1389)GGA>AGA	p.G463R	ZNF587_uc002qqb.2_Intron|ZNF776_uc002qqa.2_Missense_Mutation_p.G463R	NM_173632	NP_775903	Q68DI1	ZN776_HUMAN	zinc finger protein 776	463	C2H2-type 10; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0256)		ACATGAGTGTGGAGAATGTGG	0.448000													5	504					0	0	0.001984	0	0
ZNF776	284309	broad.mit.edu	37	19	58265928	58265928	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:58265928G>A	uc002qpx.2	+	3	1653	c.1430G>A	c.(1429-1431)CGA>CAA	p.R477Q	ZNF587_uc002qqb.2_Intron|ZNF776_uc002qqa.2_Missense_Mutation_p.R477Q	NM_173632	NP_775903	Q68DI1	ZN776_HUMAN	zinc finger protein 776	477	C2H2-type 10; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0256)		AGTCTCATTCGACATCAGCAG	0.448000													8	466					0	0	0.000978	0	0
ZNF776	284309	broad.mit.edu	37	19	58265941	58265941	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:58265941T>C	uc002qpx.2	+	3	1666	c.1443T>C	c.(1441-1443)ATT>ATC	p.I481I	ZNF587_uc002qqb.2_Intron|ZNF776_uc002qqa.2_Silent_p.I481I	NM_173632	NP_775903	Q68DI1	ZN776_HUMAN	zinc finger protein 776	481	C2H2-type 10; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0256)		ATCAGCAGATTCACTCTGGAG	0.448000													6	466					0	0	0.000978	0	0
OTOF	9381	broad.mit.edu	37	2	26697431	26697431	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:26697431G>A	uc002rhk.2	-	26	3365	c.3238C>T	c.(3238-3240)CGT>TGT	p.R1080C	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Missense_Mutation_p.R333C|OTOF_uc002rhi.2_Missense_Mutation_p.R390C|OTOF_uc002rhj.2_Missense_Mutation_p.R333C	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1080	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCGTTGCCACGGTAGATCTGG	0.532000													3	157					0	0	0.000602	0	0
ABHD1	84696	broad.mit.edu	37	2	27351332	27351332	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:27351332G>A	uc002rit.2	+	2	298	c.138G>A	c.(136-138)CCG>CCA	p.P46P	ABHD1_uc002riu.2_RNA|ABHD1_uc002riv.2_Intron	NM_032604	NP_115993	Q96SE0	ABHD1_HUMAN	abhydrolase domain-containing protein 1	46						integral to membrane	carboxylesterase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGCTGGGCCGCAGTTTCTGG	0.567000													5	462					0	0	0.001984	0	0
FAM179A	165186	broad.mit.edu	37	2	29274886	29274886	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:29274886G>A	uc010ezl.2	+	20	3338	c.2987G>A	c.(2986-2988)CGC>CAC	p.R996H	FAM179A_uc010ymm.1_Missense_Mutation_p.R941H|FAM179A_uc002rmr.3_Missense_Mutation_p.R523H	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	996							binding			ovary(3)|skin(1)	4						GGAGGCAGCCGCAAGGCCACT	0.557000													4	150					0	0	0.000602	0	0
EPAS1	2034	broad.mit.edu	37	2	46607645	46607645	+	Missense_Mutation	SNP	G	A	A	rs142445582		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:46607645G>A	uc002ruv.2	+	12	2322	c.1834G>A	c.(1834-1836)GGA>AGA	p.G612R	EPAS1_uc002ruw.2_Missense_Mutation_p.G78R	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	612					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			CTTTGATGCCGGAAGCAAAGC	0.607000													5	634					0	0	0.001168	0	0
RPS27A	6233	broad.mit.edu	37	2	55462084	55462084	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:55462084C>A	uc010yow.1	+	5	504	c.307C>A	c.(307-309)CTG>ATG	p.L103M	C2orf63_uc002ryh.2_5'Flank|C2orf63_uc002ryi.2_5'Flank|C2orf63_uc002ryj.2_5'Flank|RPS27A_uc002ryk.2_Missense_Mutation_p.L103M|RPS27A_uc002ryl.2_RNA|RPS27A_uc002rym.2_RNA	NM_001135592	NP_001129064	P62979	RS27A_HUMAN	ubiquitin and ribosomal protein S27a precursor	103					activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endocrine pancreas development|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	metal ion binding|structural constituent of ribosome			ovary(1)	1						GCTGGCTGTCCTGAAATATTA	0.383000													4	125					0.00116845	0.00147148	0.001168	1	0
SLC4A5	57835	broad.mit.edu	37	2	74474203	74474203	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:74474203G>A	uc002sko.1	-	14	2021	c.2019C>T	c.(2017-2019)TTC>TTT	p.F673F	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.F673F|SLC4A5_uc010ffc.1_Silent_p.F673F|SLC4A5_uc002skp.1_Silent_p.F609F|SLC4A5_uc002sks.1_Silent_p.F673F	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	673	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						AGGTAGTGATGAAGTTTGGCT	0.532000													32	841					0	0	0.002445	0	0
C2orf51	200523	broad.mit.edu	37	2	88828733	88828733	+	Missense_Mutation	SNP	C	A	A	rs142818036	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:88828733C>A	uc002stb.1	+	4	426	c.284C>A	c.(283-285)ACG>AAG	p.T95K		NM_152670	NP_689883	Q96LM6	TSC21_HUMAN	chromosome 2 open reading frame 51	95						nucleus				skin(1)	1						CATGAGGCCACGAGGGAGGAC	0.582000													4	587					0.000157383	0.000202751	0.003080	1	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612000													6	63					0	0	0.006214	0	0
DPP10	57628	broad.mit.edu	37	2	116572542	116572542	+	Missense_Mutation	SNP	A	G	G	rs142359009	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:116572542A>G	uc002tla.1	+	20	2331	c.1874A>G	c.(1873-1875)AAG>AGG	p.K625R	DPP10_uc002tlb.1_Missense_Mutation_p.K575R|DPP10_uc002tlc.1_Missense_Mutation_p.K621R|DPP10_uc002tle.2_Missense_Mutation_p.K629R|DPP10_uc002tlf.1_Missense_Mutation_p.K618R	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	625	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GTAGAAGTAAAGGACCAAATA	0.363000													4	689					0	0	0.001168	0	0
GPD2	2820	broad.mit.edu	37	2	157427730	157427730	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:157427730G>A	uc002tzf.3	+	13	2053	c.1693G>A	c.(1693-1695)GCA>ACA	p.A565T	GPD2_uc010zch.1_Missense_Mutation_p.A338T|GPD2_uc002tzd.3_Missense_Mutation_p.A565T|GPD2_uc002tze.1_RNA	NM_001083112	NP_001076581	P43304	GPDM_HUMAN	glycerol-3-phosphate dehydrogenase 2,	565					cellular lipid metabolic process	glycerol-3-phosphate dehydrogenase complex|mitochondrial inner membrane	calcium ion binding|sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity			ovary(1)	1						AAATGTCCAGGCAGCAGAGGA	0.428000													5	617					0	0	0.000602	0	0
PKP4	8502	broad.mit.edu	37	2	159477804	159477804	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:159477804G>A	uc002tzv.2	+	6	734	c.474G>A	c.(472-474)CAG>CAA	p.Q158Q	PKP4_uc002tzt.1_Silent_p.Q10Q|PKP4_uc002tzu.2_Silent_p.Q158Q|PKP4_uc002tzw.2_Silent_p.Q158Q|PKP4_uc002tzx.2_5'UTR|PKP4_uc002tzy.1_5'UTR|PKP4_uc002tzz.1_Silent_p.Q156Q|PKP4_uc002uaa.2_Silent_p.Q10Q	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	158					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						GTGGATACCAGGAAGCAGGGA	0.403000										HNSCC(62;0.18)			4	487					0	0	0.000602	0	0
SP3	6670	broad.mit.edu	37	2	174820773	174820773	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:174820773G>A	uc002uig.2	-	4	631	c.467C>T	c.(466-468)CCA>CTA	p.P156L	SP3_uc002uie.2_Missense_Mutation_p.P88L|SP3_uc002uif.2_Missense_Mutation_p.P103L|SP3_uc010zel.1_Missense_Mutation_p.P153L	NM_003111	NP_003102	Q02447	SP3_HUMAN	Sp3 transcription factor isoform 1	156	Transactivation domain (Gln-rich).				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	protein binding|zinc ion binding		EWSR1/SP3(3)	soft_tissue(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.185)			ATCTGATCCTGGTGCAACGGA	0.428000													6	912					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179614657	179614657	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:179614657G>C	uc002unb.2	-	46	12694	c.12470C>G	c.(12469-12471)CCA>CGA	p.P4157R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATTTTTGGTGGTTCATTAGT	0.388000													6	296					0	0	0.003080	0	0
GTF3C3	9330	broad.mit.edu	37	2	197657782	197657782	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:197657782C>T	uc002uts.2	-	3	399	c.309G>A	c.(307-309)GAG>GAA	p.E103E	GTF3C3_uc010zgu.1_Silent_p.E103E|GTF3C3_uc002utu.2_Silent_p.E103E	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	103	Glu-rich.					transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						cctcctcctcctcttcttcct	0.343000													5	228					0	0	0.001168	0	0
ABI2	10152	broad.mit.edu	37	2	204281695	204281695	+	Silent	SNP	T	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:204281695T>A	uc002vaa.2	+	10	1492	c.1257T>A	c.(1255-1257)CCT>CCA	p.P419P	ABI2_uc002uzz.2_Silent_p.P381P|ABI2_uc010zih.1_Silent_p.P67P|ABI2_uc010zii.1_Silent_p.P413P|ABI2_uc010zij.1_Silent_p.P296P|ABI2_uc002vab.2_Silent_p.P307P|ABI2_uc010zik.1_Silent_p.P144P|ABI2_uc010zil.1_Silent_p.P283P|ABI2_uc010zim.1_Silent_p.P232P|ABI2_uc002vac.2_Silent_p.P205P|ABI2_uc010zin.1_Silent_p.P96P	NM_005759	NP_005750	Q9NYB9	ABI2_HUMAN	abl interactor 2	419	Pro-rich.				actin polymerization or depolymerization|cell migration|peptidyl-tyrosine phosphorylation	cytoskeleton|cytosol|filopodium|lamellipodium	cytoskeletal adaptor activity|DNA binding|kinase binding|proline-rich region binding|SH3 domain binding|ubiquitin protein ligase binding				0						CTCCCCCACCTCCTCCTCCTC	0.498000													5	442					0	0	0.001168	0	0
SLC19A3	80704	broad.mit.edu	37	2	228564224	228564224	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:228564224A>G	uc002vpi.2	-	3	296	c.207T>C	c.(205-207)CCT>CCC	p.P69P	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Silent_p.P65P	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	69	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	GGACAAACACAGGCAGCAGCA	0.478000													6	848					0	0	0.001168	0	0
DIS3L2	129563	broad.mit.edu	37	2	233001406	233001406	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:233001406G>A	uc010fxz.2	+	8	1203	c.927G>A	c.(925-927)AAG>AAA	p.K309K	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	309							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		TGGACTGGAAGGAGGACTGCA	0.478000													5	578					0	0	0.001168	0	0
LRRFIP1	9208	broad.mit.edu	37	2	238672661	238672661	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:238672661C>A	uc002vxe.2	+	11	2597	c.2305C>A	c.(2305-2307)CTA>ATA	p.L769I	LRRFIP1_uc002vxc.2_Intron|LRRFIP1_uc010znm.1_Intron|LRRFIP1_uc002vxd.2_Missense_Mutation_p.L745I|LRRFIP1_uc002vxf.2_Missense_Mutation_p.L713I	NM_001137552	NP_001131024	Q32MZ4	LRRF1_HUMAN	leucine rich repeat (in FLII) interacting	769					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|cytoskeleton|nucleus	DNA binding|double-stranded RNA binding|protein binding			breast(3)	3		Breast(86;0.00257)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;9.75e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.01e-10)|Kidney(56;4.85e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.31e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000151)|Lung(119;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0325)|COAD - Colon adenocarcinoma(134;0.228)		CAGCAATAGCCTAGAGAACGA	0.483000													4	353					0.000602214	0.000764116	0.000602	1	0
SIGLEC1	6614	broad.mit.edu	37	20	3675509	3675509	+	Silent	SNP	G	A	A	rs147210074	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:3675509G>A	uc002wja.2	-	11	2745	c.2745C>T	c.(2743-2745)AGC>AGT	p.S915S	SIGLEC1_uc002wjb.1_5'Flank|SIGLEC1_uc002wiz.3_Silent_p.S915S	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	915	Ig-like C2-type 9.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GTACCTGGCAGCTCAGGACCA	0.632000													4	167					0	0	0.001984	0	0
NINL	22981	broad.mit.edu	37	20	25439044	25439044	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:25439044G>T	uc002wux.1	-	22	3892	c.3818C>A	c.(3817-3819)GCC>GAC	p.A1273D	NINL_uc010gdn.1_Missense_Mutation_p.A924D|NINL_uc002wuw.1_Missense_Mutation_p.A64D	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	1273	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						GCGCCTCCTGGCCTGCTCTCC	0.677000													11	339					4.3838e-07	5.93517e-07	0.001855	1	0
POFUT1	23509	broad.mit.edu	37	20	30797965	30797965	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:30797965G>A	uc002wxp.2	+	2	265	c.216G>A	c.(214-216)GAG>GAA	p.E72E	POFUT1_uc002wxo.2_Silent_p.E72E|POFUT1_uc010ztt.1_Intron|POFUT1_uc010ztu.1_Intron|PLAGL2_uc002wxn.2_5'Flank	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	72					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CTTGGATTGAGTACCAGCATC	0.522000													5	821					0	0	0.000602	0	0
SEMG1	6406	broad.mit.edu	37	20	43837052	43837052	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:43837052C>A	uc002xni.2	+	2	1171	c.1114C>A	c.(1114-1116)CGC>AGC	p.R372S	SEMG1_uc002xnj.2_Missense_Mutation_p.R312S|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Intron	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	372	58 AA repeat 2.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				TGTATCCCAACGCAGTATTTA	0.418000													5	258					0.000602214	0.000764116	0.000602	1	0
ZNF831	128611	broad.mit.edu	37	20	57768617	57768617	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:57768617C>T	uc002yan.2	+	1	2543	c.2543C>T	c.(2542-2544)ACG>ATG	p.T848M		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	848						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGTGGGCCCACGCAGCCTGCC	0.637000													5	308					0	0	0.001168	0	0
C20orf135	140701	broad.mit.edu	37	20	62493290	62493290	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:62493290C>A	uc002ygx.1	+	1	725	c.397C>A	c.(397-399)CGC>AGC	p.R133S		NM_080622	NP_542189	Q9H3Z7	ABHGB_HUMAN	hypothetical protein LOC140701	133							hydrolase activity				0	all_cancers(38;1.77e-12)|all_epithelial(29;3.12e-14)|Lung NSC(23;5.92e-10)|all_lung(23;2.08e-09)					GGGCCAAGAGCGCCTCGTGGA	0.711000													18	87					2.35188e-11	3.37415e-11	0.006122	1	0
GCFC1	94104	broad.mit.edu	37	21	34117199	34117199	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:34117199A>G	uc002yqn.2	-	13	2284	c.2094T>C	c.(2092-2094)CCT>CCC	p.P698P	GCFC1_uc002yql.2_Silent_p.P207P|GCFC1_uc002yqm.2_Silent_p.P192P|GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Silent_p.P698P	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	698				Missing (in Ref. 5; AAD34617).		cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TTGTAGAAAAAGGGTCCCACA	0.328000													4	456					0	0	0.000602	0	0
SON	6651	broad.mit.edu	37	21	34922713	34922713	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:34922713G>A	uc002yse.1	+	3	1225	c.1176G>A	c.(1174-1176)CCG>CCA	p.P392P	SON_uc002ysb.1_Silent_p.P392P|SON_uc002ysc.2_Silent_p.P392P|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	392					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						CCTCCATGCCGGAGTTGCAGG	0.662000													5	197					0	0	0.001168	0	0
SON	6651	broad.mit.edu	37	21	34923961	34923961	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:34923961C>T	uc002yse.1	+	3	2473	c.2424C>T	c.(2422-2424)ACC>ACT	p.T808T	SON_uc002ysb.1_Silent_p.T808T|SON_uc002ysc.2_Silent_p.T808T|SON_uc002ysd.2_Intron|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	808	17 X 10 AA tandem repeats of L-A-[ST]- [NSG]-[TS]-MDSQM.				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						TGTTAGCAACCAGCTCCATGG	0.512000													7	758					0	0	0.001368	0	0
SON	6651	broad.mit.edu	37	21	34923991	34923991	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:34923991C>T	uc002yse.1	+	3	2503	c.2454C>T	c.(2452-2454)ACC>ACT	p.T818T	SON_uc002ysb.1_Silent_p.T818T|SON_uc002ysc.2_Silent_p.T818T|SON_uc002ysd.2_Intron|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	818	17 X 10 AA tandem repeats of L-A-[ST]- [NSG]-[TS]-MDSQM.				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						TGTTAGCAACCAGCTCCATGG	0.507000													6	729					0	0	0.004990	0	0
TRPM2	7226	broad.mit.edu	37	21	45795897	45795897	+	Splice_Site	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:45795897G>A	uc002zet.1	+	7	1165	c.952_splice	c.e7+1	p.G318_splice	TRPM2_uc002zeu.1_Splice_Site_p.G318_splice|TRPM2_uc002zew.1_Splice_Site_p.G318_splice|TRPM2_uc010gpt.1_Splice_Site_p.G318_splice|TRPM2_uc002zex.1_Splice_Site_p.G104_splice	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,							integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GAAAGAGGAGGTAGGGGAGCT	0.592000													4	225					0	0	0.001168	0	0
LRRC3	81543	broad.mit.edu	37	21	45877295	45877295	+	Silent	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:45877295G>T	uc002zfa.2	+	2	1061	c.768G>T	c.(766-768)GGG>GGT	p.G256G		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	256						integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		TCGGCCCGGGGCCCTAGCGCC	0.637000													14	129					6.49762e-13	9.402e-13	0.006122	1	0
POTEH	23784	broad.mit.edu	37	22	16287673	16287673	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:16287673C>G	uc010gqp.2	-	1	265	c.213G>C	c.(211-213)TGG>TGC	p.W71C	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	71										skin(1)	1						TCCCCCTGCACCAGGGGAAGC	0.582000													7	667					0	0	0.000978	0	0
DGCR2	9993	broad.mit.edu	37	22	19036089	19036089	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:19036089G>A	uc002zoq.1	-	7	1118	c.870C>T	c.(868-870)GAC>GAT	p.D290D	DGCR2_uc002zor.1_Silent_p.D66D|DGCR2_uc011agr.1_Silent_p.D246D|DGCR11_uc002zos.2_5'Flank	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	290	Extracellular (Potential).|VWFC.				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					GGCATGGGTCGTCCCCCTTAG	0.547000													6	862					0	0	0.000248	0	0
CHEK2	11200	broad.mit.edu	37	22	29121266	29121266	+	Silent	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:29121266G>T	uc003adu.1	-	3	481	c.409C>A	c.(409-411)CGA>AGA	p.R137R	CHEK2_uc003ads.1_5'UTR|CHEK2_uc010gvh.1_Intron|CHEK2_uc010gvi.1_Silent_p.R137R|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Silent_p.R180R|CHEK2_uc003adv.1_Silent_p.R137R|CHEK2_uc003adw.1_Silent_p.R137R|CHEK2_uc003adx.1_5'UTR|CHEK2_uc003ady.1_Silent_p.R137R|CHEK2_uc003adz.1_5'UTR	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	137	FHA.		R -> Q (might influence susceptibility to breast cancer; does not cause protein abrogation in familial colorectal cancer).		cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						CTGTATGTTCGGTATTTATCT	0.363000			F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				8	572					0.000157383	0.000202751	0.003080	1	0
CACNA1I	8911	broad.mit.edu	37	22	40075752	40075752	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:40075752C>G	uc003ayc.2	+	33	5420	c.5420C>G	c.(5419-5421)TCT>TGT	p.S1807C	CACNA1I_uc003ayd.2_Missense_Mutation_p.S1772C|CACNA1I_uc003aye.2_Missense_Mutation_p.S1722C|CACNA1I_uc003ayf.2_Missense_Mutation_p.S1687C	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1807	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GACAGCGTCTCTTTAATCATC	0.632000													3	90					0	0	0.000248	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50659212	50659212	+	Silent	SNP	A	G	G	rs141527317		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:50659212A>G	uc003bkb.1	-	16	4088	c.3576T>C	c.(3574-3576)TCT>TCC	p.S1192S	TUBGCP6_uc003bka.1_Silent_p.S279S|TUBGCP6_uc010har.1_Silent_p.S1184S|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1192	7.|9 X 27 AA tandem repeats.				G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TGCTGGCATCAGACACGTGTC	0.617000													8	325					0	0	0.002450	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50659293	50659293	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:50659293G>A	uc003bkb.1	-	16	4007	c.3495C>T	c.(3493-3495)TCC>TCT	p.S1165S	TUBGCP6_uc003bka.1_Silent_p.S252S|TUBGCP6_uc010har.1_Silent_p.S1157S|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1165	9 X 27 AA tandem repeats.|6.				G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TGCTGGCATCGGACACGTGTC	0.637000													6	422					0	0	0.001984	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50664531	50664531	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:50664531T>C	uc003bkb.1	-	9	2293	c.1781A>G	c.(1780-1782)GAC>GGC	p.D594G	TUBGCP6_uc010har.1_Missense_Mutation_p.D594G|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'Flank|TUBGCP6_uc003bkd.1_5'UTR	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	594					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GACGTATATGTCGTGGGCAAT	0.557000													19	834					0	0	0.007413	0	0
TOP2B	7155	broad.mit.edu	37	3	25675377	25675377	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:25675377T>C	uc011awn.1	-	8	1024	c.981A>G	c.(979-981)AAA>AAG	p.K327K	TOP2B_uc003cdj.2_Silent_p.K322K	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	327					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GCTGGAATCCTTTTTCACTCA	0.348000													5	708					0	0	0.001984	0	0
ZNF860	344787	broad.mit.edu	37	3	32032046	32032046	+	Missense_Mutation	SNP	G	A	A	rs143925165	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:32032046G>A	uc011axg.1	+	2	2024	c.1475G>A	c.(1474-1476)CGT>CAT	p.R492H		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	492	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGACCTTCCGTCACAATTCA	0.403000													7	740					0	0	0.006214	0	0
STAC	6769	broad.mit.edu	37	3	36524567	36524567	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:36524567C>T	uc003cgh.1	+	3	511	c.472C>T	c.(472-474)CGG>TGG	p.R158W	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Intron	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	158	Phorbol-ester/DAG-type.				intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						GGCACCCCAGCGGTGCATGGG	0.572000													5	265					0	0	0.001984	0	0
MAP4	4134	broad.mit.edu	37	3	47958144	47958144	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:47958144A>G	uc003csb.2	-	7	1699	c.1173T>C	c.(1171-1173)GCT>GCC	p.A391A	MAP4_uc003csc.3_Silent_p.A391A|MAP4_uc011bbf.1_Silent_p.A368A|MAP4_uc003csf.3_Silent_p.A408A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	391	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGAGCCAAGTCCA	0.443000													9	816					0	0	0.000978	0	0
MAP4	4134	broad.mit.edu	37	3	47958147	47958147	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:47958147C>T	uc003csb.2	-	7	1696	c.1170G>A	c.(1168-1170)TTG>TTA	p.L390L	MAP4_uc003csc.3_Silent_p.L390L|MAP4_uc011bbf.1_Silent_p.L367L|MAP4_uc003csf.3_Silent_p.L407L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	390	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGAGCCAAGTCCATTT	0.448000													9	802					0	0	0.000978	0	0
MAP4	4134	broad.mit.edu	37	3	47958222	47958222	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:47958222G>A	uc003csb.2	-	7	1621	c.1095C>T	c.(1093-1095)GCC>GCT	p.A365A	MAP4_uc003csc.3_Silent_p.A365A|MAP4_uc011bbf.1_Silent_p.A342A|MAP4_uc003csf.3_Silent_p.A382A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	365	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGGGCTAAGTCCA	0.478000													9	865					0	0	0.006214	0	0
QRICH1	54870	broad.mit.edu	37	3	49114393	49114393	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:49114393G>A	uc010hkq.2	-	3	354	c.58C>T	c.(58-60)CGG>TGG	p.R20W	QRICH1_uc003cvu.2_Missense_Mutation_p.R20W|QRICH1_uc003cvv.2_Missense_Mutation_p.R20W	NM_198880	NP_942581	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	20	CARD.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		GGGACAGACCGTGCCTTTACT	0.478000													5	668					0	0	0.001168	0	0
RPL29	6159	broad.mit.edu	37	3	52027797	52027797	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:52027797G>C	uc003dcs.2	-	4	542	c.448C>G	c.(448-450)CGT>GGT	p.R150G		NM_000992	NP_000983	P47914	RL29_HUMAN	ribosomal protein L29	150					embryo implantation|endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	heparin binding|protein binding|RNA binding|structural constituent of ribosome				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GCCTGGGTACGTTTGGGAGCC	0.507000													4	439					0	0	0.001168	0	0
DNAH1	25981	broad.mit.edu	37	3	52402841	52402841	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:52402841G>A	uc011bef.1	+	37	6111	c.5850G>A	c.(5848-5850)CCG>CCA	p.P1950P		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1950	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TCGATGGGCCGGTGGATGCCA	0.572000													5	641					0	0	0.004482	0	0
DNAH1	25981	broad.mit.edu	37	3	52402874	52402874	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:52402874G>A	uc011bef.1	+	37	6144	c.5883G>A	c.(5881-5883)ACG>ACA	p.T1961T		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1961	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ACATGAACACGGTGCTGGATG	0.572000													5	576					0	0	0.001984	0	0
NT5DC2	64943	broad.mit.edu	37	3	52568572	52568572	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:52568572G>A	uc003deo.2	-	1	522	c.98C>T	c.(97-99)GCG>GTG	p.A33V	NT5DC2_uc003den.2_5'Flank|NT5DC2_uc010hmi.2_5'Flank|NT5DC2_uc010hmj.2_5'UTR|LOC440957_uc003dep.2_5'Flank	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	33							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		GTTTCCCGGCGCACGCCCCTC	0.622000													5	503					0	0	0.001984	0	0
FEZF2	55079	broad.mit.edu	37	3	62355801	62355801	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:62355801G>A	uc003dlh.2	-	4	1544	c.1337C>T	c.(1336-1338)GCT>GTT	p.A446V	FEZF2_uc003dli.2_Missense_Mutation_p.A446V	NM_018008	NP_060478	Q8TBJ5	FEZF2_HUMAN	FEZ family zinc finger 2	446					transcription, DNA-dependent	nucleus	zinc ion binding			lung(1)	1		Lung SC(41;0.0262)		BRCA - Breast invasive adenocarcinoma(55;0.000221)|KIRC - Kidney renal clear cell carcinoma(15;0.00834)|Kidney(15;0.00957)		GGAGGGGGCAGCAGGGCCCAC	0.542000													4	266					0	0	0.000248	0	0
TOMM70A	9868	broad.mit.edu	37	3	100092471	100092471	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:100092471G>C	uc003dtw.2	-	8	1678	c.1246C>G	c.(1246-1248)CAA>GAA	p.Q416E		NM_014820	NP_055635	O94826	TOM70_HUMAN	translocase of outer mitochondrial membrane 70	416	Cytoplasmic (Potential).|TPR 6.				protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane translocase complex	protein binding|protein transmembrane transporter activity			ovary(1)	1						TCTTCAACTTGATCAAGGAGT	0.358000													8	444					0	0	0.003080	0	0
PLCXD2	257068	broad.mit.edu	37	3	111432939	111432939	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:111432939G>T	uc003dya.2	+	3	1416	c.830G>T	c.(829-831)GGC>GTC	p.G277V	PLCXD2_uc003dyb.2_Missense_Mutation_p.G277V|PLCXD2_uc003dxz.2_Missense_Mutation_p.G277V	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	277					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						ATTGCCCGGGGCTTGGTTGGG	0.502000													11	213					9.70103e-10	1.38001e-09	0.000673	1	0
ADCY5	111	broad.mit.edu	37	3	123014982	123014982	+	Silent	SNP	G	A	A	rs142086014	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:123014982G>A	uc003egh.1	-	17	3012	c.3012C>T	c.(3010-3012)CAC>CAT	p.H1004H	ADCY5_uc003egg.1_Silent_p.H662H	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1004	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CCTGCTGGGCGTGCAGGTACA	0.632000													4	335					0	0	0.000248	0	0
SLC12A8	84561	broad.mit.edu	37	3	124826478	124826478	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:124826478C>T	uc003ehv.3	-	10	1663	c.1552G>A	c.(1552-1554)GAG>AAG	p.E518K	SLC12A8_uc003ehw.3_Missense_Mutation_p.E547K|SLC12A8_uc003eht.3_Missense_Mutation_p.E319K|SLC12A8_uc003ehu.3_Missense_Mutation_p.E271K|SLC12A8_uc010hry.2_Missense_Mutation_p.E271K	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	518					potassium ion transport	integral to membrane	symporter activity				0						TCAGAGATCTCGACAGGGAAA	0.552000													11	435					0	0	0.001368	0	0
IFT122	55764	broad.mit.edu	37	3	129214429	129214429	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:129214429C>T	uc003emm.2	+	18	2393	c.2187C>T	c.(2185-2187)CTC>CTT	p.L729L	IFT122_uc003eml.2_Silent_p.L780L|IFT122_uc003emn.2_Silent_p.L670L|IFT122_uc003emo.2_Silent_p.L618L|IFT122_uc003emp.2_Silent_p.L579L|IFT122_uc010htc.2_Silent_p.L721L|IFT122_uc011bky.1_Silent_p.L520L|IFT122_uc003emq.2_Silent_p.L569L|IFT122_uc003emr.2_Silent_p.L481L|IFT122_uc011bla.1_Silent_p.L502L|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Silent_p.L110L|IFT122_uc011bkx.1_Silent_p.L569L|IFT122_uc010htd.1_Silent_p.L208L	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	729					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						ACACCGACCTCTGCATGTTTG	0.527000													12	320					0	0	0.002450	0	0
TRH	7200	broad.mit.edu	37	3	129695840	129695840	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:129695840G>A	uc003enc.2	+	3	1071	c.510G>A	c.(508-510)GAG>GAA	p.E170E		NM_007117	NP_009048	P20396	TRH_HUMAN	thyrotropin-releasing hormone	170					cell-cell signaling|hormone-mediated signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|thyrotropin-releasing hormone activity			ovary(1)	1						Gggaagaagaggaggaggagg	0.547000													4	201					0	0	0.001168	0	0
MAGEF1	64110	broad.mit.edu	37	3	184429428	184429428	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:184429428G>T	uc003fpa.2	-	1	409	c.182C>A	c.(181-183)GCC>GAC	p.A61D		NM_022149	NP_071432	Q9HAY2	MAGF1_HUMAN	melanoma antigen family F, 1	61										ovary(1)	1	all_cancers(143;4.61e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;5.64e-35)|OV - Ovarian serous cystadenocarcinoma(80;2.56e-22)			GGCCGCCAAGGCCCTCGCGCC	0.706000													16	222					2.27731e-05	3.0344e-05	0.001882	1	0
MUC4	4585	broad.mit.edu	37	3	195505772	195505772	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:195505772C>G	uc011bto.1	-	3	12755	c.12295G>C	c.(12295-12297)GTC>CTC	p.V4099L	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	984	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGGCTGGTGACAGGAAGAGGG	0.582000													4	72					0	0	0.000602	0	0
ZNF721	170960	broad.mit.edu	37	4	435737	435737	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:435737T>C	uc003gag.2	-	3	3210	c.2519A>G	c.(2518-2520)GAA>GGA	p.E840G	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.E872G|ZNF721_uc010ibe.2_Missense_Mutation_p.E828G	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	840						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCCACATTCTTCACATGTGTA	0.393000													5	517					0	0	0.003080	0	0
MUC7	4589	broad.mit.edu	37	4	71347185	71347185	+	Missense_Mutation	SNP	T	C	C	rs79807294	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:71347185T>C	uc011cat.1	+	4	1012	c.724T>C	c.(724-726)TCT>CCT	p.S242P	MUC7_uc011cau.1_Missense_Mutation_p.S242P|MUC7_uc003hfj.2_Missense_Mutation_p.S242P|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	242	Thr-rich.|4.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCCACACCTTCTGCAACTAC	0.592000													10	806					0	0	0.003163	0	0
FGF5	2250	broad.mit.edu	37	4	81188003	81188003	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:81188003C>T	uc003hmd.2	+	1	262	c.25C>T	c.(25-27)CTC>TTC	p.L9F	FGF5_uc003hme.2_Missense_Mutation_p.L9F	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	9					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						CCTCCTCCTCCTCTTCTTCAG	0.627000													4	411					0	0	0.000602	0	0
HELQ	113510	broad.mit.edu	37	4	84342751	84342751	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:84342751C>T	uc003hom.2	-	15	3093	c.2914G>A	c.(2914-2916)GCC>ACC	p.A972T	HELQ_uc010ikb.2_Missense_Mutation_p.A905T|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	972							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						GAGAATGAGGCAGTTCCAGTG	0.323000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					5	216					0	0	0.003080	0	0
AFF1	4299	broad.mit.edu	37	4	88035546	88035546	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:88035546C>A	uc003hqj.3	+	11	1947	c.1540C>A	c.(1540-1542)CAG>AAG	p.Q514K	AFF1_uc011ccz.1_Missense_Mutation_p.Q521K|AFF1_uc003hqk.3_Missense_Mutation_p.Q514K|AFF1_uc011cda.1_Missense_Mutation_p.Q152K	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	514						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		AAACAAATGGCAGCTGGACAA	0.512000													10	81					1.33987e-11	1.92773e-11	0.000673	1	0
FAM13A	10144	broad.mit.edu	37	4	89950680	89950680	+	Missense_Mutation	SNP	G	A	A	rs114435452	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:89950680G>A	uc003hse.1	-	2	356	c.148C>T	c.(148-150)CGG>TGG	p.R50W	FAM13A_uc003hsf.1_Translation_Start_Site|FAM13A_uc003hsh.1_Translation_Start_Site|FAM13A_uc003hsi.2_Missense_Mutation_p.R50W|FAM13A_uc003hsj.2_Missense_Mutation_p.R50W	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	50	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						AGCCCCTGCCGTTCAAGTTCT	0.418000													19	780					0	0	0.001523	0	0
ALPK1	80216	broad.mit.edu	37	4	113359713	113359713	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:113359713G>A	uc003iap.3	+	13	3541	c.3262G>A	c.(3262-3264)GCA>ACA	p.A1088T	ALPK1_uc003ian.3_Missense_Mutation_p.A1088T|ALPK1_uc011cfx.1_Missense_Mutation_p.A1010T|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_Missense_Mutation_p.A916T	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	1088	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		ACAGATGACCGCACAGCACTA	0.428000													5	643					0	0	0.001168	0	0
KIAA1109	84162	broad.mit.edu	37	4	123260370	123260370	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:123260370G>A	uc003ieh.2	+	70	12204	c.12159G>A	c.(12157-12159)CAG>CAA	p.Q4053Q	KIAA1109_uc003iem.2_Silent_p.Q409Q|KIAA1109_uc003ien.2_5'UTR	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4053					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AGCCCTCACAGATCAAATTTA	0.338000													4	424					0	0	0.001984	0	0
PHF17	79960	broad.mit.edu	37	4	129767634	129767634	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:129767634G>A	uc003igk.2	+	4	523	c.243G>A	c.(241-243)GAG>GAA	p.E81E	PHF17_uc003igj.2_Silent_p.E81E|PHF17_uc003igl.2_Silent_p.E81E|PHF17_uc011cgy.1_Silent_p.E81E|PHF17_uc003igm.2_Silent_p.E81E	NM_199320	NP_955352	Q6IE81	JADE1_HUMAN	PHD finger protein 17 long isoform	81					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding				0						AGGAATGGGAGAAAGGGGTCC	0.567000													6	498					0	0	0.001168	0	0
HHIP	64399	broad.mit.edu	37	4	145628318	145628318	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:145628318G>A	uc003ijs.1	+	6	1718	c.1063G>A	c.(1063-1065)GGA>AGA	p.G355R		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	355						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		GCATCTGGGAGGACAACTGCT	0.418000													5	327					0	0	0.000602	0	0
OTUD4	54726	broad.mit.edu	37	4	146058966	146058966	+	Silent	SNP	G	A	A	rs146975610	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:146058966G>A	uc003ika.3	-	21	2904	c.2766C>T	c.(2764-2766)AGC>AGT	p.S922S	OTUD4_uc003ijz.3_Silent_p.S921S	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	986							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					TTTCTTTCAGGCTTTGAATGG	0.453000													8	845					0	0	0.006214	0	0
OTUD4	54726	broad.mit.edu	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:146059006G>A	uc003ika.3	-	21	2864	c.2726C>T	c.(2725-2727)ACT>ATT	p.T909I	OTUD4_uc003ijz.3_Missense_Mutation_p.T908I	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	973							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AACAGGCACAGTTTCTCTCTC	0.463000													17	807					0	0	0.004990	0	0
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:146059041A>G	uc003ika.3	-	21	2829	c.2691T>C	c.(2689-2691)CAT>CAC	p.H897H	OTUD4_uc003ijz.3_Silent_p.H896H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	961							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GAGTGGGAGGATGAGCCTTTC	0.478000													11	756					0	0	0.002450	0	0
POU4F2	5458	broad.mit.edu	37	4	147560212	147560212	+	Translation_Start_Site	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:147560212C>A	uc003ikv.2	+	1	168	c.-80C>A	c.(-82--78)GGCTG>GGATG			NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor						estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					CCAGCCCCGGCTGGCCCGGCA	0.692000													9	32					0.00621372	0.00757953	0.006214	1	0
LRBA	987	broad.mit.edu	37	4	151749398	151749398	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:151749398G>A	uc010ipj.2	-	30	5579	c.5105C>T	c.(5104-5106)CCA>CTA	p.P1702L	LRBA_uc003ilt.3_Missense_Mutation_p.P361L|LRBA_uc003ilu.3_Missense_Mutation_p.P1702L	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1702						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AAGGCAGGCTGGTGGCAGAAG	0.448000													4	664					0	0	0.000248	0	0
FGB	2244	broad.mit.edu	37	4	155490846	155490846	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:155490846G>A	uc003ioa.3	+	7	1178	c.1139G>A	c.(1138-1140)GGT>GAT	p.G380D	FGB_uc003iob.3_Intron|FGB_uc010ipv.2_Missense_Mutation_p.G318D|FGB_uc010ipw.2_Intron|FGB_uc003ioc.3_Missense_Mutation_p.G161D	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	380	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	GGAACAGCCGGTAATGCCCTC	0.458000													5	350					0	0	0.000602	0	0
PRDM9	56979	broad.mit.edu	37	5	23527693	23527693	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:23527693T>C	uc003jgo.2	+	11	2678	c.2496T>C	c.(2494-2496)TAT>TAC	p.Y832Y		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	832	C2H2-type 13.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGAAGCCCTATGTCTGCAGGG	0.587000										HNSCC(3;0.000094)			6	683					0	0	0.001984	0	0
SLC45A2	51151	broad.mit.edu	37	5	33947401	33947401	+	Missense_Mutation	SNP	G	A	A	rs149980670		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:33947401G>A	uc003jid.2	-	6	1327	c.1235C>T	c.(1234-1236)ACG>ATG	p.T412M	SLC45A2_uc003jie.2_Missense_Mutation_p.T412M	NM_016180	NP_057264	Q9UMX9	S45A2_HUMAN	membrane-associated transporter protein isoform	412	Helical; Name=9; (Potential).				melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane		p.T412M(1)		ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						AATAAATCCCGTCCCCAGGCC	0.488000													29	624					0	0	0.002096	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64569170	64569170	+	Silent	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:64569170T>C	uc003jtp.2	-	12	2431	c.1617A>G	c.(1615-1617)AAA>AAG	p.K539K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Silent_p.K160K	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	539	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		AGCTTACCCCTTTTTCAATAT	0.408000													7	828					0	0	0.004482	0	0
MAST4	375449	broad.mit.edu	37	5	66461895	66461895	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:66461895G>A	uc003jut.1	+	28	6389	c.6321G>A	c.(6319-6321)GAG>GAA	p.E2107E	MAST4_uc003juw.2_Silent_p.E2035E|MAST4_uc003jux.2_Intron	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	2299						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		GGCCCCTGGAGGTGCTGGAGA	0.627000											OREG0016638	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	66					0	0	0.004672	0	0
SPZ1	84654	broad.mit.edu	37	5	79616461	79616461	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:79616461G>C	uc003kgn.2	+	1	672	c.427G>C	c.(427-429)GAG>CAG	p.E143Q	uc011ctk.1_Intron	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		AAAGAAACAGGAGATGATATT	0.358000													5	588					0	0	0.001168	0	0
SLC12A2	6558	broad.mit.edu	37	5	127420309	127420309	+	Silent	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:127420309G>T	uc003kus.2	+	1	827	c.663G>T	c.(661-663)GTG>GTT	p.V221V	FLJ33630_uc003kun.2_5'Flank|FLJ33630_uc003kuo.2_5'Flank|FLJ33630_uc003kup.1_5'Flank|FLJ33630_uc003kuq.1_5'Flank|FLJ33630_uc003kur.2_5'Flank|SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Silent_p.V221V	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	221	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	TGGACGCTGTGCCCAGGATCG	0.637000													9	111					3.86212e-05	5.09235e-05	0.000673	1	0
PCDHB4	56131	broad.mit.edu	37	5	140502496	140502496	+	Missense_Mutation	SNP	T	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:140502496T>A	uc003lip.1	+	1	916	c.916T>A	c.(916-918)TTG>ATG	p.L306M		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	306	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAAAAAAAAATTGGATTTCGA	0.373000													6	782					0	0	0.001984	0	0
PCDHB15	56121	broad.mit.edu	37	5	140627003	140627003	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:140627003G>A	uc003lje.2	+	1	1857	c.1857G>A	c.(1855-1857)GCG>GCA	p.A619A		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	619	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGTGTGGGCGCACAATGGCG	0.687000													16	293					0	0	0.001523	0	0
CDX1	1044	broad.mit.edu	37	5	149562392	149562392	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:149562392G>A	uc003lrq.2	+	2	603	c.507G>A	c.(505-507)CTG>CTA	p.L169L		NM_001804	NP_001795	P47902	CDX1_HUMAN	caudal type homeobox 1	169	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCCTGGAGCTGGAGAAGGAGT	0.557000													5	694					0	0	0.001984	0	0
SFXN1	94081	broad.mit.edu	37	5	174953665	174953665	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:174953665G>T	uc003mda.2	+	11	1035	c.897G>T	c.(895-897)GAG>GAT	p.E299D		NM_022754	NP_073591	Q9H9B4	SFXN1_HUMAN	sideroflexin 1	299					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity|protein binding			ovary(1)	1	all_cancers(89;0.00922)|Renal(175;0.000269)|Lung NSC(126;0.00515)|all_lung(126;0.00873)	Medulloblastoma(196;0.0399)|all_neural(177;0.0663)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CAAGCTTGGAGGCCGAGTTGC	0.488000													5	674					0.00448238	0.00553448	0.004482	1	0
MGAT1	4245	broad.mit.edu	37	5	180219529	180219529	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:180219529G>A	uc003mmg.3	-	2	938	c.443C>T	c.(442-444)ACG>ATG	p.T148M	MGAT1_uc010jlf.2_Missense_Mutation_p.T148M|MGAT1_uc010jlg.2_Missense_Mutation_p.T148M|MGAT1_uc003mmh.3_Missense_Mutation_p.T148M|MGAT1_uc010jlh.2_Missense_Mutation_p.T148M|MGAT1_uc003mmi.3_Missense_Mutation_p.T148M	NM_002406	NP_002397	P26572	MGAT1_HUMAN	mannosyl (alpha-1,3-)-glycoprotein	148	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(1)	1	all_cancers(89;1.11e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00356)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCTGGGCCGTCTCCTCGTG	0.677000													5	271					0	0	0.000602	0	0
FAM50B	26240	broad.mit.edu	37	6	3850337	3850337	+	Silent	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:3850337C>A	uc003mvu.2	+	2	404	c.292C>A	c.(292-294)CGG>AGG	p.R98R		NM_012135	NP_036267	Q9Y247	FA50B_HUMAN	family with sequence similarity 50, member B	98						nucleus				pancreas(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				GGAGGagcagcggctgcagca	0.517000													3	45					0.00024832	0.000318278	0.000248	1	0
DSP	1832	broad.mit.edu	37	6	7581745	7581745	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:7581745G>C	uc003mxp.1	+	23	5601	c.5322G>C	c.(5320-5322)CAG>CAC	p.Q1774H	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1774	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATGATTTACAGAGAGAGAGGG	0.423000													5	552					0	0	0.000602	0	0
NHLRC1	378884	broad.mit.edu	37	6	18122658	18122658	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:18122658G>A	uc003ncl.1	-	1	194	c.180C>T	c.(178-180)CAC>CAT	p.H60H		NM_198586	NP_940988	Q6VVB1	NHLC1_HUMAN	NHL repeat containing 1	60	RING-type.				proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	endoplasmic reticulum|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0	Ovarian(93;0.016)|Breast(50;0.0245)	all_hematologic(90;0.165)	all cancers(50;0.0451)|Epithelial(50;0.0493)			GAGTGCGCGGGTGCGCCAGGG	0.701000													3	41					0	0	0.004672	0	0
BTN2A3	54718	broad.mit.edu	37	6	26422353	26422353	+	Missense_Mutation	SNP	C	T	T	rs141013110		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:26422353C>T	uc011dkl.1	+	1	37	c.7C>T	c.(7-9)CCA>TCA	p.P3S	BTN2A3_uc011dkm.1_RNA					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						GCTCATGGAACCAGCTGCTGC	0.622000													36	709					0	0	0.003214	0	0
MUC21	394263	broad.mit.edu	37	6	30954947	30954947	+	Missense_Mutation	SNP	A	C	C	rs144550410		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:30954947A>C	uc003nsh.2	+	2	1246	c.995A>C	c.(994-996)AAC>ACC	p.N332T	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	332	Ser-rich.|28 X 15 AA approximate tandem repeats.|21.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						ACAGCCACCAACTCTGAGTCC	0.622000													12	862					0	0	0.004007	0	0
TAP2	6891	broad.mit.edu	37	6	32800563	32800563	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:32800563C>T	uc003occ.2	-	5	1015	c.984G>A	c.(982-984)GCG>GCA	p.A328A	TAP2_uc011dqf.1_Silent_p.A328A|TAP2_uc003ocb.1_Silent_p.A328A|TAP2_uc003ocd.2_Silent_p.A328A	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	328	Involved in peptide-binding site.|ABC transmembrane type-1.|Cytoplasmic (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						CCACCTGCCCCGCCCTGGCCA	0.592000													5	349					0	0	0.001168	0	0
ZNF76	7629	broad.mit.edu	37	6	35258084	35258084	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:35258084G>A	uc003oki.1	+	6	679	c.474G>A	c.(472-474)CAG>CAA	p.Q158Q	ZNF76_uc011dsy.1_Silent_p.Q158Q|ZNF76_uc011dsz.1_Silent_p.Q158Q|ZNF76_uc003okj.1_Silent_p.Q158Q	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	158					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAAAGGGCAGCAAGTTGGAG	0.527000													5	888					0	0	0.001168	0	0
MAPK14	1432	broad.mit.edu	37	6	36043714	36043714	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:36043714G>A	uc003olp.2	+	7	1066	c.585G>A	c.(583-585)CTG>CTA	p.L195L	MAPK14_uc011dth.1_Silent_p.L195L|MAPK14_uc003olo.2_Silent_p.L195L|MAPK14_uc003olq.2_Silent_p.L195L|MAPK14_uc003olr.2_Silent_p.L195L|MAPK14_uc011dti.1_Silent_p.L118L	NM_001315	NP_001306	Q16539	MK14_HUMAN	mitogen-activated protein kinase 14 isoform 1	195	Protein kinase.				activation of MAPK activity|cellular component movement|cellular response to ionizing radiation|chemotaxis|innate immune response|mRNA metabolic process|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of muscle cell differentiation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|signal transduction in response to DNA damage|stress-activated MAPK cascade|stress-induced premature senescence|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|MAP kinase kinase activity|protein binding			ovary(2)|stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	6						AGATCATGCTGAACTGGATGC	0.458000													4	272					0	0	0.001168	0	0
STK38	11329	broad.mit.edu	37	6	36467733	36467733	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:36467733G>A	uc003omg.2	-	9	1457	c.869C>T	c.(868-870)GCT>GTT	p.A290V	STK38_uc003omh.2_Missense_Mutation_p.A290V|STK38_uc003omi.2_Missense_Mutation_p.A290V	NM_007271	NP_009202	Q15208	STK38_HUMAN	serine/threonine kinase 38	290	Protein kinase.				intracellular protein kinase cascade|negative regulation of MAP kinase activity	cytoplasm|MLL5-L complex	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6						CACCTCAGGAGCAATGTAGTC	0.532000													5	614					0	0	0.000602	0	0
BTBD9	114781	broad.mit.edu	37	6	38548016	38548016	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:38548016G>A	uc003ooa.3	-	6	1588	c.1012C>T	c.(1012-1014)CTC>TTC	p.L338F	BTBD9_uc003ony.3_Missense_Mutation_p.L270F|BTBD9_uc010jwv.2_Missense_Mutation_p.L270F|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Missense_Mutation_p.L338F	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	338					cell adhesion						0						TCCCACAAGAGTATCCGTATG	0.418000													4	265					0	0	0.000248	0	0
MDN1	23195	broad.mit.edu	37	6	90448153	90448153	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:90448153G>A	uc003pnn.1	-	33	4731	c.4615C>T	c.(4615-4617)CGG>TGG	p.R1539W		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1539					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TCTGTAAACCGGTTTCTTAAG	0.378000													9	398					0	0	0.002450	0	0
SEC63	11231	broad.mit.edu	37	6	108214765	108214765	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:108214765A>T	uc003psc.3	-	16	1864	c.1595T>A	c.(1594-1596)TTA>TAA	p.L532*	SEC63_uc003psb.3_Nonsense_Mutation_p.L392*	NM_007214	NP_009145	Q9UGP8	SEC63_HUMAN	SEC63-like protein	532	SEC63 1.|Cytoplasmic (Potential).				protein folding|protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|receptor activity|unfolded protein binding			ovary(1)|skin(1)	2		all_cancers(87;5.35e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00225)|Colorectal(196;0.0294)		BRCA - Breast invasive adenocarcinoma(108;0.0079)|Epithelial(106;0.0356)|all cancers(137;0.0525)|OV - Ovarian serous cystadenocarcinoma(136;0.054)		TTTTTTTTTTAAAGGTTTCTT	0.358000													6	427					0	0	0.001984	0	0
FIG4	9896	broad.mit.edu	37	6	110048438	110048438	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:110048438C>A	uc003ptt.2	+	4	631	c.416C>A	c.(415-417)TCT>TAT	p.S139Y	FIG4_uc011eau.1_Intron	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	139					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		CCCAATGATTCTGTACGGGTT	0.284000													6	771					0.00448238	0.00553448	0.004482	1	0
LAMA4	3910	broad.mit.edu	37	6	112486440	112486440	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:112486440C>T	uc003pvu.2	-	13	1899	c.1590G>A	c.(1588-1590)GTG>GTA	p.V530V	LAMA4_uc003pvv.2_Silent_p.V523V|LAMA4_uc003pvt.2_Silent_p.V523V	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	530	Domain II and I.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		GAGACATGTTCACCACTTCCA	0.453000													9	428					0	0	0.004482	0	0
TULP4	56995	broad.mit.edu	37	6	158924700	158924700	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:158924700G>C	uc003qrf.2	+	13	5362	c.4005G>C	c.(4003-4005)AAG>AAC	p.K1335N	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	1335					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		AATTTGGAAAGAAGAACCGGA	0.537000													7	242					0	0	0.003080	0	0
EZR	7430	broad.mit.edu	37	6	159197482	159197482	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:159197482A>G	uc003qrt.3	-	7	968	c.753T>C	c.(751-753)AAT>AAC	p.N251N	EZR_uc011efs.1_Silent_p.N219N|EZR_uc003qru.3_Silent_p.N251N	NM_003379	NP_003370	P15311	EZRI_HUMAN	ezrin	251	Interaction with SCYL3.|FERM.				actin filament bundle assembly|axon guidance|cytoskeletal anchoring at plasma membrane|leukocyte cell-cell adhesion|membrane to membrane docking|regulation of cell shape	actin filament|apical plasma membrane|basolateral plasma membrane|cortical cytoskeleton|cytosol|extrinsic to membrane|filopodium|microvillus membrane|nucleolus|ruffle membrane	actin filament binding|cell adhesion molecule binding			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-17)|BRCA - Breast invasive adenocarcinoma(81;6.58e-06)		ACTTTTTGTCATTGAAAGAGA	0.378000													16	474					0	0	0.001523	0	0
PLG	5340	broad.mit.edu	37	6	161139765	161139765	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:161139765A>G	uc003qtm.3	+	9	1054	c.991A>G	c.(991-993)AGG>GGG	p.R331G		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	331	Kringle 3.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TGACGGAAAAAGGGCCCCATG	0.473000													5	227					0	0	0.001168	0	0
MLLT4	4301	broad.mit.edu	37	6	168352080	168352080	+	Missense_Mutation	SNP	G	A	A	rs138608115		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:168352080G>A	uc003qwd.2	+	29	4164	c.4022G>A	c.(4021-4023)CGT>CAT	p.R1341H	MLLT4_uc003qwb.1_Missense_Mutation_p.R1326H|MLLT4_uc003qwc.1_Missense_Mutation_p.R1342H|MLLT4_uc003qwg.1_Missense_Mutation_p.R651H	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1342					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GGCCCTGGCCGTTGGAAAACA	0.607000			T	MLL	AL								5	584					0	0	0.001984	0	0
SCRN1	9805	broad.mit.edu	37	7	29966124	29966124	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:29966124G>A	uc010kvp.2	-	6	1234	c.1030C>T	c.(1030-1032)CGG>TGG	p.R344W	SCRN1_uc011jzy.1_Missense_Mutation_p.R276W|SCRN1_uc003tak.2_Missense_Mutation_p.R344W|SCRN1_uc011jzz.1_Missense_Mutation_p.R344W|SCRN1_uc011kaa.1_Missense_Mutation_p.R364W|SCRN1_uc011jzw.1_Missense_Mutation_p.R211W|SCRN1_uc011jzx.1_Missense_Mutation_p.R167W	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	344					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						AGCTCATGCCGGCGGTCTGGT	0.582000													4	594					0	0	0.000248	0	0
C7orf10	79783	broad.mit.edu	37	7	40899974	40899974	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:40899974G>A	uc003thn.1	+	14	1258	c.1213G>A	c.(1213-1215)GGG>AGG	p.G405R	C7orf10_uc003thm.1_Missense_Mutation_p.G401R|C7orf10_uc003tho.1_Missense_Mutation_p.G357R|C7orf10_uc003thp.1_RNA	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	412							transferase activity			ovary(2)	2						CCCGCTGCTCGGGCAGCACAC	0.567000													16	720					0	0	0.003330	0	0
CAMK2B	816	broad.mit.edu	37	7	44302642	44302642	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:44302642T>C	uc003tkq.2	-	3	392	c.182A>G	c.(181-183)GAG>GGG	p.E61G	CAMK2B_uc003tkp.2_Missense_Mutation_p.E61G|CAMK2B_uc003tkx.2_Missense_Mutation_p.E61G|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Missense_Mutation_p.E61G|CAMK2B_uc003tks.2_Missense_Mutation_p.E61G|CAMK2B_uc003tku.2_Missense_Mutation_p.E61G|CAMK2B_uc003tkv.2_Missense_Mutation_p.E61G|CAMK2B_uc003tkt.2_Missense_Mutation_p.E61G|CAMK2B_uc003tkw.2_Missense_Mutation_p.E61G|CAMK2B_uc010kyc.2_Missense_Mutation_p.E61G	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	61	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						GATCCGAGCCTCTCTCTCCAG	0.622000													4	409					0	0	0.000248	0	0
SEPT14	346288	broad.mit.edu	37	7	55863666	55863666	+	Silent	SNP	G	A	A	rs144569846	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:55863666G>A	uc003tqz.2	-	10	1356	c.1239C>T	c.(1237-1239)TCC>TCT	p.S413S		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	413					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GCAGTGCTTCGGAGGCAGCTT	0.373000													6	407					0	0	0.001984	0	0
ZNF479	90827	broad.mit.edu	37	7	57187725	57187725	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:57187725G>T	uc010kzo.2	-	5	1668	c.1397C>A	c.(1396-1398)ACA>AAA	p.T466K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	466	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATGTGTAGGGTCT	0.428000													6	701					0.000673444	0.000852354	0.000673	1	0
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:57187809T>G	uc010kzo.2	-	5	1584	c.1313A>C	c.(1312-1314)AAA>ACA	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	438	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453000													11	346					0	0	0.000978	0	0
ZNF92	168374	broad.mit.edu	37	7	64863705	64863705	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:64863705A>G	uc003ttz.2	+	4	821	c.678A>G	c.(676-678)GAA>GAG	p.E226E	ZNF92_uc003tua.2_Silent_p.E157E|ZNF92_uc010kzu.2_Silent_p.E194E|ZNF92_uc003tub.2_Silent_p.E150E	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	226						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				ATACTGGAGAAAAACCCTACA	0.338000													4	461					0	0	0.001855	0	0
LAT2	7462	broad.mit.edu	37	7	73634080	73634080	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:73634080G>A	uc003uag.2	+	5	691	c.141G>A	c.(139-141)GAG>GAA	p.E47E	RFC2_uc011kfa.1_Intron|LAT2_uc003uah.2_Silent_p.E47E|LAT2_uc003uai.2_Silent_p.E47E|LAT2_uc010lbo.2_RNA	NM_032464	NP_115853	Q9GZY6	NTAL_HUMAN	linker for activation of T cells family member	47	Cytoplasmic (Potential).				B cell activation|B cell receptor signaling pathway|calcium-mediated signaling|mast cell degranulation	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding				0						CCAGGCGTGAGGACCAACAGA	0.617000													5	796					0	0	0.003080	0	0
MTERF	7978	broad.mit.edu	37	7	91503609	91503609	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:91503609A>G	uc003ulb.1	-	2	543	c.499T>C	c.(499-501)TTT>CTT	p.F167L	MTERF_uc010let.1_Intron|MTERF_uc003ulc.1_Missense_Mutation_p.F167L|MTERF_uc011khm.1_Missense_Mutation_p.F147L|MTERF_uc010leu.1_Missense_Mutation_p.F147L	NM_006980	NP_008911	Q99551	MTERF_HUMAN	mitochondrial transcription termination factor	167					DNA geometric change|regulation of transcription, DNA-dependent|termination of mitochondrial transcription	mitochondrial nucleoid	double-stranded DNA binding				0	all_cancers(62;2.28e-09)|all_epithelial(64;1.07e-07)|Breast(17;0.00371)|all_hematologic(106;0.091)|all_lung(186;0.178)|Lung NSC(181;0.235)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.0993)|Kidney(17;0.118)|Epithelial(20;0.136)|LUSC - Lung squamous cell carcinoma(200;0.176)			GACCGAAAAAAGGATTCAGGA	0.388000													4	430					0	0	0.000248	0	0
ASB4	51666	broad.mit.edu	37	7	95157367	95157367	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:95157367G>A	uc011kij.1	+	3	730	c.730G>A	c.(730-732)GAA>AAA	p.E244K	ASB4_uc003unx.2_Missense_Mutation_p.E244K	NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	244	ANK 5.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			CTACAAAGCCGAAGTCAATGC	0.597000											OREG0018172	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	264					0	0	0.000602	0	0
ZAN	7455	broad.mit.edu	37	7	100349878	100349878	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:100349878C>T	uc003uwj.2	+	14	2315	c.2150C>T	c.(2149-2151)CCC>CTC	p.P717L	ZAN_uc003uwk.2_Missense_Mutation_p.P717L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	717	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCAGAAAAACCCACCATCCCC	0.507000													5	331					0	0	0.003080	0	0
MUC17	140453	broad.mit.edu	37	7	100681203	100681203	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:100681203G>A	uc003uxp.1	+	3	6559	c.6506G>A	c.(6505-6507)AGC>AAC	p.S2169N	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2169	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|34.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATGCCTGTCAGCACCACAGTG	0.468000													5	822					0	0	0.004672	0	0
MUC17	140453	broad.mit.edu	37	7	100682158	100682158	+	Missense_Mutation	SNP	G	C	C	rs147944556		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:100682158G>C	uc003uxp.1	+	3	7514	c.7461G>C	c.(7459-7461)ATG>ATC	p.M2487I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2487	Extracellular (Potential).|40.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCACACCTATGACCACTTCTA	0.493000													7	880					0	0	0.004007	0	0
DPY19L2P2	349152	broad.mit.edu	37	7	102898150	102898150	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:102898150G>A	uc003vbh.3	-	8	2231	c.40C>T	c.(40-42)CGC>TGC	p.R14C	DPY19L2P2_uc003vbg.3_RNA|DPY19L2P2_uc010lit.2_RNA	NR_003561				RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						ATGAATGTGCGATACCAGGAG	0.303000													6	651					0	0	0.006214	0	0
FOXP2	93986	broad.mit.edu	37	7	114270000	114270000	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:114270000G>A	uc003vhb.2	+	5	911	c.537G>A	c.(535-537)CAG>CAA	p.Q179Q	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.Q204Q|FOXP2_uc003vha.2_Silent_p.Q87Q|FOXP2_uc011kmu.1_Silent_p.Q196Q|FOXP2_uc011kmv.1_Silent_p.Q179Q|FOXP2_uc010ljz.1_Silent_p.Q87Q|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_Silent_p.Q179Q|FOXP2_uc003vgx.2_Silent_p.Q179Q|FOXP2_uc003vhd.2_Silent_p.Q179Q|FOXP2_uc003vhc.2_Silent_p.Q204Q	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	179	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						agcaacaacagcagcagcagc	0.159000													5	176					0	0	0.001168	0	0
NUP205	23165	broad.mit.edu	37	7	135310033	135310033	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:135310033G>A	uc003vsw.2	+	32	4632	c.4601G>A	c.(4600-4602)CGT>CAT	p.R1534H	NUP205_uc003vsx.2_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1534					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						GAAGATGACCGTACTTTGCAG	0.413000													6	696					0	0	0.001984	0	0
NEFM	4741	broad.mit.edu	37	8	24775261	24775261	+	Silent	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:24775261C>G	uc003xed.3	+	3	1926	c.1893C>G	c.(1891-1893)CCC>CCG	p.P631P	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.P255P	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	631	6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|2.|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTCCTGTGCCCAAGTCACCAG	0.522000													7	471					0	0	0.001368	0	0
NEFM	4741	broad.mit.edu	37	8	24775264	24775264	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:24775264G>A	uc003xed.3	+	3	1929	c.1896G>A	c.(1894-1896)AAG>AAA	p.K632K	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.K256K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	632	6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|2.|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTGTGCCCAAGTCACCAGTGG	0.522000													7	479					0	0	0.003163	0	0
IMPAD1	54928	broad.mit.edu	37	8	57905955	57905955	+	Missense_Mutation	SNP	G	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:57905955G>C	uc003xte.3	-	1	473	c.190C>G	c.(190-192)CGC>GGC	p.R64G		NM_017813	NP_060283	Q9NX62	IMPA3_HUMAN	inositol monophosphatase domain containing 1	64						Golgi apparatus|integral to membrane	inositol-1(or 4)-monophosphatase activity|metal ion binding			ovary(1)	1		all_cancers(86;0.175)|all_lung(136;0.0321)|Lung NSC(129;0.0417)|all_epithelial(80;0.0448)				AGCATCTCGCGCAAGTCCACG	0.572000													5	117					0	0	0.001168	0	0
COPS5	10987	broad.mit.edu	37	8	67970435	67970435	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:67970435A>G	uc003xxe.2	-	3	721	c.390T>C	c.(388-390)CTT>CTC	p.L130L	COPS5_uc003xxd.2_Silent_p.L66L|COPS5_uc003xxf.2_Silent_p.L175L|COPS5_uc010lyu.1_5'Flank|COPS5_uc010lyv.1_Silent_p.L130L	NM_006837	NP_006828	Q92905	CSN5_HUMAN	COP9 signalosome subunit 5	130	MPN.				cullin deneddylation|transcription from RNA polymerase II promoter	eukaryotic translation initiation factor 3 complex|signalosome	metal ion binding|metallopeptidase activity|protein binding|transcription coactivator activity|translation initiation factor activity			ovary(1)|skin(1)	2	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00389)|OV - Ovarian serous cystadenocarcinoma(28;0.00691)|all cancers(69;0.0205)|BRCA - Breast invasive adenocarcinoma(89;0.153)			TTGCATTTTCAAGGCGGCCAA	0.438000													3	231					0	0	0.004672	0	0
TRPA1	8989	broad.mit.edu	37	8	72969219	72969219	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:72969219C>T	uc003xza.2	-	10	1302	c.1127G>A	c.(1126-1128)CGT>CAT	p.R376H		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	376	Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	CAGAAAATTACGTCCAAAATT	0.299000													6	224					0	0	0.004482	0	0
UBR5	51366	broad.mit.edu	37	8	103357749	103357749	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:103357749G>A	uc003ykr.1	-	8	794	c.761C>T	c.(760-762)GCC>GTC	p.A254V	UBR5_uc003yks.1_Missense_Mutation_p.A254V	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	254					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			ATGAATGTCGGCATCAAGGAG	0.398000													4	271					0	0	0.001168	0	0
TRPS1	7227	broad.mit.edu	37	8	116430660	116430660	+	Silent	SNP	A	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:116430660A>T	uc003ynz.2	-	5	3141	c.2682T>A	c.(2680-2682)GTT>GTA	p.V894V	TRPS1_uc011lhy.1_Silent_p.V898V|TRPS1_uc003yny.2_Silent_p.V907V|TRPS1_uc010mcy.2_Silent_p.V894V	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	894			V -> D (in TRPS3; in heterozygous status has a milder effect causing TRPS1).		negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			TGGCACAAAAAACACCGGAGC	0.488000									Langer-Giedion_syndrome				18	547					0	0	0.001882	0	0
TOP1MT	116447	broad.mit.edu	37	8	144406778	144406778	+	Silent	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:144406778C>T	uc003yxz.2	-	6	712	c.693G>A	c.(691-693)CCG>CCA	p.P231P	TOP1MT_uc011lkd.1_Silent_p.P133P|TOP1MT_uc011lke.1_Silent_p.P133P|TOP1MT_uc010mfb.2_Silent_p.P133P|TOP1MT_uc011lkf.1_Silent_p.P26P|TOP1MT_uc010mfd.1_Silent_p.P26P	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	231					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	GCCCCGCCGGCGGCTCGGGGA	0.562000													5	612					0	0	0.001168	0	0
PLEC	5339	broad.mit.edu	37	8	144993947	144993947	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:144993947G>A	uc003zaf.1	-	32	10623	c.10453C>T	c.(10453-10455)CGG>TGG	p.R3485W	PLEC_uc003zab.1_Missense_Mutation_p.R3348W|PLEC_uc003zac.1_Missense_Mutation_p.R3352W|PLEC_uc003zad.2_Missense_Mutation_p.R3348W|PLEC_uc003zae.1_Missense_Mutation_p.R3316W|PLEC_uc003zag.1_Missense_Mutation_p.R3326W|PLEC_uc003zah.2_Missense_Mutation_p.R3334W|PLEC_uc003zaj.2_Missense_Mutation_p.R3375W	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3485	Plectin 12.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						AGCAGCGTCCGCACGGAGCCC	0.657000													4	214					0	0	0.001168	0	0
KIAA1045	23349	broad.mit.edu	37	9	34971579	34971579	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:34971579G>A	uc003zvq.2	+	2	462	c.284G>A	c.(283-285)AGG>AAG	p.R95K	KIAA1045_uc003zvr.2_Missense_Mutation_p.R95K	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	95							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			GAGTTTGACAGGACAAGTCGA	0.627000													5	840					0	0	0.003080	0	0
GNE	10020	broad.mit.edu	37	9	36222930	36222930	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:36222930G>T	uc010mlh.2	-	9	1692	c.1477C>A	c.(1477-1479)CAA>AAA	p.Q493K	CLTA_uc003zzf.1_Intron|GNE_uc010mlg.2_Intron|GNE_uc011lpl.1_Missense_Mutation_p.Q383K|GNE_uc010mli.2_Missense_Mutation_p.Q524K|GNE_uc010mlj.2_Missense_Mutation_p.Q488K	NM_005476	NP_005467	Q9Y223	GLCNE_HUMAN	UDP-N-acetylglucosamine-2-epimerase/N-	493	UDP-N-acetylglucosamine 2-epimerase.|N-acetylmannosamine kinase.				cell adhesion|lipopolysaccharide biosynthetic process|N-acetylneuraminate metabolic process|UDP-N-acetylglucosamine metabolic process		ATP binding|N-acylmannosamine kinase activity|UDP-N-acetylglucosamine 2-epimerase activity				0			STAD - Stomach adenocarcinoma(86;0.228)			TTCCACTCTTGGATCAGTTTG	0.517000													5	658					2.0095e-06	2.69177e-06	0.001984	1	0
FLJ46321	389763	broad.mit.edu	37	9	84606758	84606758	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:84606758T>C	uc004amn.2	+	4	1420	c.1373T>C	c.(1372-1374)ATT>ACT	p.I458T		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	458						integral to membrane					0						TTAACCTCAATTGCTGTTAAG	0.423000													7	310					0	0	0.006214	0	0
ALDOB	229	broad.mit.edu	37	9	104192059	104192059	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:104192059T>C	uc004bbk.2	-	3	384	c.302A>G	c.(301-303)AAG>AGG	p.K101R		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	101					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CACGATCCCCTTTTCCTTGAG	0.522000													5	852					0	0	0.004672	0	0
TRIM32	22954	broad.mit.edu	37	9	119461247	119461247	+	Missense_Mutation	SNP	G	A	A	rs145828717		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:119461247G>A	uc004bjx.2	+	2	1384	c.1226G>A	c.(1225-1227)CGC>CAC	p.R409H	ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjs.1_Intron|ASTN2_uc004bjt.1_Intron|TRIM32_uc004bjw.2_Missense_Mutation_p.R409H	NM_001099679	NP_001093149	Q13049	TRI32_HUMAN	tripartite motif-containing 32	409					fat cell differentiation|innate immune response|negative regulation of apoptosis|negative regulation of fibroblast proliferation|positive regulation of cell cycle|positive regulation of cell growth|positive regulation of cell migration|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein catabolic process|positive regulation of proteolysis|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to tumor necrosis factor|response to UV	nucleus	myosin binding|protein self-association|RNA binding|Tat protein binding|transcription coactivator activity|translation initiation factor binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(2)|kidney(1)	3						GAAATCCGCCGCAGCCCCAGT	0.507000									Bardet-Biedl_syndrome				7	755					0	0	0.003080	0	0
PHF19	26147	broad.mit.edu	37	9	123636324	123636324	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:123636324C>G	uc004bks.1	-	3	454	c.201G>C	c.(199-201)AAG>AAC	p.K67N	PHF19_uc004bkt.2_Missense_Mutation_p.K67N|PHF19_uc010mvk.2_Missense_Mutation_p.K67N	NM_015651	NP_056466	Q5T6S3	PHF19_HUMAN	PHD finger protein 19 isoform a	67					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|breast(1)	2						GGCAGCTTTGCTTAGAGCTGC	0.488000													5	491					0	0	0.001984	0	0
GOLGA1	2800	broad.mit.edu	37	9	127651752	127651752	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:127651752G>A	uc004bpc.2	-	17	1903	c.1561C>T	c.(1561-1563)CTT>TTT	p.L521F	GOLGA1_uc010mws.2_RNA	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	521	Potential.|Gln-rich.					Golgi cisterna membrane				ovary(1)	1						TTCTGGAGAAGCACTTCGGTT	0.522000													5	776					0	0	0.001168	0	0
SH2D3C	10044	broad.mit.edu	37	9	130511758	130511758	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:130511758C>A	uc004bsc.2	-	5	1013	c.871G>T	c.(871-873)GAC>TAC	p.D291Y	SH2D3C_uc010mxo.2_Missense_Mutation_p.D131Y|SH2D3C_uc004bry.2_Missense_Mutation_p.D133Y|SH2D3C_uc004brz.3_5'UTR|SH2D3C_uc011mak.1_5'UTR|SH2D3C_uc004bsa.2_Missense_Mutation_p.D134Y|SH2D3C_uc004bsb.2_Missense_Mutation_p.D223Y	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	291	SH2.				JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						GGCACGTGGTCAAAGCTCTCC	0.592000													4	182					1.024e-07	1.40141e-07	0.000602	1	0
WDR34	89891	broad.mit.edu	37	9	131403176	131403176	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:131403176C>T	uc004bvq.1	-	2	353	c.229G>A	c.(229-231)GCC>ACC	p.A77T	WDR34_uc004bvs.1_Missense_Mutation_p.A77T|WDR34_uc004bvr.1_Missense_Mutation_p.A77T|WDR34_uc011mbi.1_5'UTR	NM_052844	NP_443076	Q96EX3	WDR34_HUMAN	WD repeat domain 34	77						cytoplasm				central_nervous_system(2)|skin(1)	3						CTGGCCTGGGCGGATGCACTG	0.652000													8	298					0	0	0.004482	0	0
TTF1	7270	broad.mit.edu	37	9	135277170	135277170	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:135277170C>A	uc004cbl.2	-	2	1091	c.1039G>T	c.(1039-1041)GTG>TTG	p.V347L	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	347					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		GGCATGGCCACTGCCTCAAAT	0.483000													5	687					5.9392e-07	8.01951e-07	0.001168	1	0
BARHL1	56751	broad.mit.edu	37	9	135464783	135464783	+	Silent	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:135464783G>T	uc004cbp.1	+	3	1050	c.858G>T	c.(856-858)CCG>CCT	p.P286P		NM_020064	NP_064448	Q9BZE3	BARH1_HUMAN	BarH-like homeobox 1	286						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;1.79e-06)|Epithelial(140;3.12e-05)		CCAGCGCGCCGCCGCCTGCTC	0.721000													15	253					1.67942e-08	2.32996e-08	0.006122	1	0
GPM6B	2824	broad.mit.edu	37	X	13798034	13798034	+	Missense_Mutation	SNP	C	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:13798034C>A	uc004cvz.2	-	4	771	c.480G>T	c.(478-480)ATG>ATT	p.M160I	GPM6B_uc004cvx.2_Missense_Mutation_p.M141I|GPM6B_uc011min.1_Missense_Mutation_p.M74I|GPM6B_uc004cwa.2_Missense_Mutation_p.M141I|GPM6B_uc004cvw.2_Missense_Mutation_p.M200I|GPM6B_uc011mim.1_Missense_Mutation_p.M174I|GPM6B_uc004cvy.2_Missense_Mutation_p.M200I	NM_005278	NP_005269	Q13491	GPM6B_HUMAN	glycoprotein M6B isoform 3	160					cell differentiation|nervous system development	integral to membrane					0						TGTTGTAGAACATAAACACGG	0.502000													8	781					0.00621372	0.00757953	0.006214	1	0
FAM47C	442444	broad.mit.edu	37	X	37027156	37027156	+	Missense_Mutation	SNP	C	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:37027156C>G	uc004ddl.1	+	1	687	c.673C>G	c.(673-675)CAG>GAG	p.Q225E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	225										ovary(3)	3						TCTCCGCCCACAGCCTCCCAA	0.647000													4	409					0	0	0.001168	0	0
FAM47C	442444	broad.mit.edu	37	X	37027200	37027200	+	Silent	SNP	A	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:37027200A>C	uc004ddl.1	+	1	731	c.717A>C	c.(715-717)CCA>CCC	p.P239P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	239										ovary(3)	3						TGGAGCCTCCAGAGACTGGAG	0.637000													5	410					0	0	0.001168	0	0
MED12	9968	broad.mit.edu	37	X	70360666	70360666	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:70360666C>T	uc004dyy.2	+	42	6425	c.6226C>T	c.(6226-6228)CAG>TAG	p.Q2076*	MED12_uc004dyz.2_Nonsense_Mutation_p.Q2075*|MED12_uc004dza.2_Nonsense_Mutation_p.Q1926*|MED12_uc010nla.2_Nonsense_Mutation_p.Q705*	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	2076	Gln-rich.				androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					gcagcagcagcagtaccacat	0.264000													6	170					0	0	0.001168	0	0
ERCC6L	54821	broad.mit.edu	37	X	71426005	71426005	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:71426005T>C	uc004eaq.1	-	2	2709	c.2612A>G	c.(2611-2613)AAA>AGA	p.K871R	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Missense_Mutation_p.K748R	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	871					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					TTTGGTTGATTTGCTAAGTAC	0.368000													3	187					0	0	0.004672	0	0
ATRX	546	broad.mit.edu	37	X	76855029	76855029	+	Missense_Mutation	SNP	T	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:76855029T>C	uc004ecp.3	-	25	6039	c.5807A>G	c.(5806-5808)AAG>AGG	p.K1936R	ATRX_uc004ecq.3_Missense_Mutation_p.K1898R|ATRX_uc004eco.3_Missense_Mutation_p.K1721R	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1936	Poly-Lys.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTTTTTCCCCTTTTTCCCTTT	0.318000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						4	880					0	0	0.003080	0	0
TEX13A	56157	broad.mit.edu	37	X	104463955	104463955	+	Silent	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:104463955A>G	uc004ema.2	-	5	1033	c.921T>C	c.(919-921)CCT>CCC	p.P307P	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.L308P	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	307						intracellular	zinc ion binding			ovary(2)	2						AGGAGGAAAAAGGGCTTGAGT	0.522000													4	245					0	0	0.000602	0	0
CXorf41	139212	broad.mit.edu	37	X	106466037	106466037	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:106466037A>G	uc004enc.2	+	5	457	c.395A>G	c.(394-396)AAG>AGG	p.K132R	CXorf41_uc004end.2_Missense_Mutation_p.K132R	NM_173494	NP_775765	Q9NQM4	CX041_HUMAN	hypothetical protein LOC139212	132											0						TTGTCAAAAAAGGACTCCTCA	0.363000													5	651					0	0	0.003080	0	0
THOC2	57187	broad.mit.edu	37	X	122802158	122802158	+	Missense_Mutation	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:122802158G>A	uc004etu.2	-	10	901	c.869C>T	c.(868-870)CCG>CTG	p.P290L	THOC2_uc011muh.1_Missense_Mutation_p.P211L|THOC2_uc011mui.1_Missense_Mutation_p.P175L	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	290					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						ATTATCAGCCGGAAGAAGCTA	0.299000													4	491					0	0	0.000602	0	0
BCORL1	63035	broad.mit.edu	37	X	129148067	129148067	+	Missense_Mutation	SNP	G	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:129148067G>T	uc004evb.1	+	4	1433	c.1319G>T	c.(1318-1320)GGG>GTG	p.G440V	BCORL1_uc010nrd.1_Missense_Mutation_p.G342V	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	440	Pro-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						TTTCAGCCAGGGACAGTGCTG	0.507000													5	354					0.000602214	0.000764116	0.000602	1	0
GPC4	2239	broad.mit.edu	37	X	132458560	132458560	+	Silent	SNP	G	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:132458560G>A	uc004exc.1	-	3	536	c.324C>T	c.(322-324)TTC>TTT	p.F108F	GPC4_uc011mvg.1_Silent_p.F38F	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	108					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GTTCTTTGAAGAATTCTGAAA	0.284000													19	484					0	0	0.003330	0	0
MAP7D3	79649	broad.mit.edu	37	X	135313711	135313711	+	Missense_Mutation	SNP	C	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:135313711C>T	uc004ezt.2	-	8	1496	c.1405G>A	c.(1405-1407)GCT>ACT	p.A469T	MAP7D3_uc004ezs.2_Missense_Mutation_p.A433T|MAP7D3_uc011mwc.1_Missense_Mutation_p.A451T|MAP7D3_uc010nsa.1_Missense_Mutation_p.A427T	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	469						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					ACCTTTGGAGCGTCTCTCGCT	0.428000													18	772					0	0	0.007413	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993410	140993410	+	Missense_Mutation	SNP	A	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:140993410A>G	uc004fbt.2	+	4	506	c.220A>G	c.(220-222)AAG>GAG	p.K74E	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	74							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGAGGGGAAGGACTCCCA	0.582000										HNSCC(15;0.026)			4	698					0	0	0.003080	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6536011	6536013	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:6536011_6536013delCTC	uc001ano.1	-	4	396_398	c.295_297delGAG	c.(295-297)GAGdel	p.E99del	PLEKHG5_uc001ann.1_In_Frame_Del_p.E80del|PLEKHG5_uc001anq.1_In_Frame_Del_p.E120del|PLEKHG5_uc001anp.1_In_Frame_Del_p.E120del|PLEKHG5_uc009vma.1_5'UTR|PLEKHG5_uc010nzr.1_In_Frame_Del_p.E112del|PLEKHG5_uc001ank.1_In_Frame_Del_p.E43del|PLEKHG5_uc009vmb.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anl.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anm.1_In_Frame_Del_p.E43del	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	99	Poly-Glu.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CCACAGAGCTCTCCTCCTCCTCC	0.631											OREG0013041	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	655	---	---	---	---					
CLSTN1	22883	broad.mit.edu	37	1	9790640	9790642	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:9790640_9790642delCCT	uc001aqh.2	-	19	3629_3631	c.2870_2872delAGG	c.(2869-2874)GAGGGG>GGG	p.E957del	CLSTN1_uc001aqi.2_In_Frame_Del_p.E947del|CLSTN1_uc010oag.1_In_Frame_Del_p.E938del|CLSTN1_uc001aqf.2_In_Frame_Del_p.E221del	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	957	Glu-rich (highly acidic).|Cytoplasmic (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		CCCTGCTCCCCCTCCTCCTCCTC	0.557													8	502	---	---	---	---					
AADACL3	126767	broad.mit.edu	37	1	12785494	12785494	+	Frame_Shift_Del	DEL	G	-	-	rs7513079	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:12785494delG	uc009vnn.1	+	4	817	c.584delG	c.(583-585)TGTfs	p.C195fs	AADACL3_uc001aug.1_Frame_Shift_Del_p.C125fs	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	195							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		ATCTGCTACTGTTTTTTTCAA	0.458													15	1043	---	---	---	---					
EPHA8	2046	broad.mit.edu	37	1	22927799	22927800	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:22927799_22927800insC	uc001bfx.1	+	16	2861_2862	c.2736_2737insC	c.(2734-2739)CCACCCfs	p.P912fs		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	912_913	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TCAGGTGCCCACCCCCTGCCTT	0.698													7	555	---	---	---	---					
SNIP1	79753	broad.mit.edu	37	1	38003368	38003370	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:38003368_38003370delTCC	uc001cbi.2	-	4	1243_1245	c.1170_1172delGGA	c.(1168-1173)GAGGAA>GAA	p.390_391EE>E	SNIP1_uc010oid.1_RNA	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	390_391	Poly-Glu.				production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				AGACACTTCTTCCTCCTCCTCCT	0.448													10	771	---	---	---	---					
RSPO1	284654	broad.mit.edu	37	1	38078467	38078469	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:38078467_38078469delTGC	uc001cbl.1	-	8	1538_1540	c.750_752delGCA	c.(748-753)CAGCAA>CAA	p.250_251QQ>Q	RSPO1_uc001cbm.1_In_Frame_Del_p.250_251QQ>Q|RSPO1_uc009vvf.1_In_Frame_Del_p.223_224QQ>Q|RSPO1_uc009vvg.1_In_Frame_Del_p.187_188QQ>Q	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	250_251					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CACTGTCCCTTGCTGCTGCTGCT	0.621													9	855	---	---	---	---					
ZMPSTE24	10269	broad.mit.edu	37	1	40756542	40756543	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:40756542_40756543insT	uc001cfg.2	+	9	1287_1288	c.1076_1077insT	c.(1075-1077)TGTfs	p.C359fs		NM_005857	NP_005848	O75844	FACE1_HUMAN	zinc metallopeptidase STE24	359	Helical; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane	metal ion binding|metalloexopeptidase activity				0	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			TCTTTCCTGTGTTTTTTTTTAT	0.332													15	408	---	---	---	---					
MAST2	23139	broad.mit.edu	37	1	46494559	46494559	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:46494559delT	uc001cov.2	+	18	2455	c.2172delT	c.(2170-2172)CCTfs	p.P724fs	MAST2_uc001cow.2_Frame_Shift_Del_p.P724fs|MAST2_uc001coy.1_Frame_Shift_Del_p.P398fs|MAST2_uc001coz.1_Frame_Shift_Del_p.P609fs|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	724	Protein kinase.				regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					GCTGCGTCCCTTTTTTTGGAG	0.552													9	1476	---	---	---	---					
USP24	23358	broad.mit.edu	37	1	55603222	55603224	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:55603222_55603224delCTG	uc001cyg.3	-	25	2685_2687	c.2685_2687delCAG	c.(2683-2688)AGCAGT>AGT	p.895_896SS>S		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1055_1056	Ser-rich.				ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						AAAAACCCCACTGCTGCTGCTGC	0.448													7	207	---	---	---	---					
LPAR3	23566	broad.mit.edu	37	1	85331664	85331665	+	Frame_Shift_Ins	INS	-	A	A	rs76299065		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:85331664_85331665insA	uc001dkl.2	-	1	178_179	c.139_140insT	c.(139-141)TCTfs	p.S47fs	LPAR3_uc009wcj.1_Frame_Shift_Ins_p.S47fs	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	47	Helical; Name=1; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						CAGAGAATTAGAAAAAAAAATA	0.401													19	669	---	---	---	---					
COL24A1	255631	broad.mit.edu	37	1	86283753	86283753	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:86283753delT	uc001dlj.2	-	46	3849	c.3807delA	c.(3805-3807)AAAfs	p.K1269fs	COL24A1_uc001dli.2_Frame_Shift_Del_p.K405fs|COL24A1_uc010osd.1_Frame_Shift_Del_p.K569fs|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1269	Collagen-like 14.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CAGGAGCTCCTTTTTTCCCCT	0.383													7	654	---	---	---	---					
ZNF326	284695	broad.mit.edu	37	1	90470782	90470784	+	In_Frame_Del	DEL	GTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:90470782_90470784delGTG	uc001dnq.2	+	4	327_329	c.188_190delGTG	c.(187-192)AGTGGT>AGT	p.G68del	ZNF326_uc001dnp.3_In_Frame_Del_p.G68del|ZNF326_uc009wda.1_In_Frame_Del_p.G68del|ZNF326_uc001dnr.2_Intron	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1	68	Mediates transcriptional activation (By similarity).|Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		GACAATCACAGTGGTGGTGGTGG	0.409													7	801	---	---	---	---					
BRDT	676	broad.mit.edu	37	1	92447228	92447230	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:92447228_92447230delAGC	uc001dok.3	+	12	2267_2269	c.1918_1920delAGC	c.(1918-1920)AGCdel	p.S648del	BRDT_uc001dol.3_In_Frame_Del_p.S648del|BRDT_uc010osz.1_In_Frame_Del_p.S652del|BRDT_uc009wdf.2_In_Frame_Del_p.S575del|BRDT_uc010ota.1_In_Frame_Del_p.S602del|BRDT_uc010otb.1_In_Frame_Del_p.S602del|BRDT_uc001dom.3_In_Frame_Del_p.S648del	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	648	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		ACTGAGTGAGagcagcagcagca	0.350													12	547	---	---	---	---					
HIAT1	64645	broad.mit.edu	37	1	100534122	100534122	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:100534122delT	uc001dst.2	+	7	799	c.799delT	c.(799-801)TTTfs	p.F267fs		NM_033055	NP_149044	Q96MC6	HIAT1_HUMAN	hippocampus abundant transcript 1	267	Cytoplasmic (Potential).				transmembrane transport	integral to membrane|plasma membrane	transporter activity				0		all_epithelial(167;2.96e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0832)|all cancers(265;0.136)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.195)		ATATTCCAGCTTTTTTTTATA	0.388													10	763	---	---	---	---					
COL11A1	1301	broad.mit.edu	37	1	103355065	103355065	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:103355065delT	uc001dul.2	-	59	4728	c.4410delA	c.(4408-4410)AAAfs	p.K1470fs	COL11A1_uc001duk.2_Frame_Shift_Del_p.K666fs|COL11A1_uc001dum.2_Frame_Shift_Del_p.K1482fs|COL11A1_uc001dun.2_Frame_Shift_Del_p.K1431fs|COL11A1_uc009weh.2_Frame_Shift_Del_p.K1354fs	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1470	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CTCGGTCACCTTTTTCCCCTT	0.403													8	679	---	---	---	---					
SLC25A24	29957	broad.mit.edu	37	1	108700183	108700183	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:108700183delT	uc001dvn.3	-	5	784	c.570delA	c.(568-570)AAAfs	p.K190fs	SLC25A24_uc001dvm.2_Frame_Shift_Del_p.K171fs	NM_013386	NP_037518	Q6NUK1	SCMC1_HUMAN	solute carrier family 25 member 24 isoform 1	190	Mitochondrial intermembrane (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)	1		all_epithelial(167;3.72e-05)|all_lung(203;0.000567)|Lung NSC(277;0.0011)|Melanoma(281;0.211)		Colorectal(144;0.0345)|Lung(183;0.0971)|COAD - Colon adenocarcinoma(174;0.127)|Epithelial(280;0.134)		ATTGTCCGGATTTTTTTTCGT	0.453													8	690	---	---	---	---					
C1orf194	127003	broad.mit.edu	37	1	109649189	109649189	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:109649189delT	uc009wev.2	-	4	475	c.407delA	c.(406-408)AAGfs	p.K136fs	C1orf194_uc001dwp.3_RNA|C1orf194_uc009wew.2_Frame_Shift_Del_p.K124fs	NM_001122961	NP_001116433	Q5T5A4	CA194_HUMAN	hypothetical protein LOC127003	136										ovary(1)	1						GATGGACTCCTTTTTAGGGTT	0.483													7	1455	---	---	---	---					
SYCP1	6847	broad.mit.edu	37	1	115537600	115537601	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:115537600_115537601insA	uc001efr.2	+	32	3100_3101	c.2891_2892insA	c.(2890-2892)AGAfs	p.R964fs	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Frame_Shift_Ins_p.R964fs|SYCP1_uc009wgw.2_Frame_Shift_Ins_p.R939fs	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	964	Arg/Lys-rich (basic).				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAATGGATAGAAAAAAAAAAC	0.356													34	365	---	---	---	---					
SPAG17	200162	broad.mit.edu	37	1	118539321	118539322	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:118539321_118539322insT	uc001ehk.2	-	33	4889_4890	c.4821_4822insA	c.(4819-4824)AAATTGfs	p.K1607fs		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1607_1608						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TCATCTTCCAATTTTTTTTCAG	0.351													8	437	---	---	---	---					
HFE2	148738	broad.mit.edu	37	1	145415369	145415371	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:145415369_145415371delGAG	uc001eni.2	+	3	513_515	c.188_190delGAG	c.(187-192)CGAGGA>CGA	p.G69del	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_5'UTR|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	69	Poly-Gly.			G -> GG (in Ref. 3; ABC40718).	axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGAGCACTTCGAGGAGGAGGAGG	0.626													8	492	---	---	---	---					
TCHH	7062	broad.mit.edu	37	1	152082957	152082959	+	In_Frame_Del	DEL	CTC	-	-	rs143222885	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:152082957_152082959delCTC	uc001ezp.2	-	2	2734_2736	c.2734_2736delGAG	c.(2734-2736)GAGdel	p.E912del	TCHH_uc009wne.1_In_Frame_Del_p.E912del	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	912	4-1.|10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCTCTGTAGCTCCTCCTCCTCC	0.586													29	1048	---	---	---	---					
TCHH	7062	broad.mit.edu	37	1	152083818	152083820	+	In_Frame_Del	DEL	CGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:152083818_152083820delCGG	uc001ezp.2	-	2	1873_1875	c.1873_1875delCCG	c.(1873-1875)CCGdel	p.P625del	TCHH_uc009wne.1_In_Frame_Del_p.P625del	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	625	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCTTCCTCCGGCTCCTCGCGC	0.680													8	518	---	---	---	---					
FLAD1	80308	broad.mit.edu	37	1	154962050	154962050	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:154962050delA	uc001fgf.1	+	3	1486	c.1132delA	c.(1132-1134)AAAfs	p.K378fs	FLAD1_uc001fgd.1_Frame_Shift_Del_p.K378fs|FLAD1_uc001fge.1_Frame_Shift_Del_p.K281fs|FLAD1_uc001fgg.1_Frame_Shift_Del_p.K281fs|FLAD1_uc001fgh.1_Intron	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	378					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TTCTTTGGGGAAAAAGGTGGC	0.488													10	775	---	---	---	---					
NES	10763	broad.mit.edu	37	1	156642804	156642804	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:156642804delG	uc001fpq.2	-	4	1309	c.1176delC	c.(1174-1176)CCCfs	p.P392fs		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	392	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCTGAGGTGTGGGGGGGATGG	0.597													11	1316	---	---	---	---					
PRCC	5546	broad.mit.edu	37	1	156761535	156761536	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:156761535_156761536insC	uc001fqa.2	+	4	1420_1421	c.1130_1131insC	c.(1129-1131)GTCfs	p.V377fs	PRCC_uc001fqb.2_Intron	NM_005973	NP_005964	Q92733	PRCC_HUMAN	papillary renal cell carcinoma	377					cell cycle|mitotic cell cycle checkpoint	nucleus	protein binding		PRCC/TFE3(25)	kidney(25)|central_nervous_system(2)	27	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCGGCCCTGGTCCCCCCCCAGG	0.530			T	TFE3	papillary renal 								17	664	---	---	---	---					
OR10Z1	128368	broad.mit.edu	37	1	158576487	158576487	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:158576487delG	uc010pio.1	+	1	259	c.259delG	c.(259-261)GGGfs	p.G87fs		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					TGGCCTGGCTGGGGGGGACCA	0.552													8	1639	---	---	---	---					
PCP4L1	654790	broad.mit.edu	37	1	161254154	161254156	+	In_Frame_Del	DEL	GGA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:161254154_161254156delGGA	uc001gad.2	+	3	338_340	c.90_92delGGA	c.(88-93)GCGGAG>GCG	p.E35del		NM_001102566	NP_001096036	A6NKN8	PC4L1_HUMAN	Purkinje cell protein 4 like 1	35											0	all_cancers(52;4.16e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TCAAGAAGGCGGAGGAGGAGGAG	0.488													9	673	---	---	---	---					
NOS1AP	9722	broad.mit.edu	37	1	162326888	162326890	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:162326888_162326890delCAG	uc001gbv.2	+	8	1288_1290	c.901_903delCAG	c.(901-903)CAGdel	p.Q306del	NOS1AP_uc010pkr.1_In_Frame_Del_p.Q301del|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_In_Frame_Del_p.Q301del	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	306	Poly-Gln.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			gcagctcctccagcagcAGCAGC	0.512													10	283	---	---	---	---					
PAPPA2	60676	broad.mit.edu	37	1	176762724	176762724	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:176762724delC	uc001gkz.2	+	20	6213	c.5049delC	c.(5047-5049)ATCfs	p.I1683fs	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1683	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGTGTGTAATCCCCCCCAGTG	0.468													14	782	---	---	---	---					
GPR25	2848	broad.mit.edu	37	1	200842776	200842778	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:200842776_200842778delTGC	uc001gvn.1	+	1	611_613	c.611_613delTGC	c.(610-615)TTGCTG>TTG	p.204_205LL>L		NM_005298	NP_005289	O00155	GPR25_HUMAN	G protein-coupled receptor 25	204_205	Helical; Name=5; (Potential).|Poly-Leu.					integral to plasma membrane				ovary(1)	1						GGCCTCAGCTTGCTGCTGCTGCT	0.724													12	145	---	---	---	---					
CACNA1S	779	broad.mit.edu	37	1	201029886	201029886	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:201029886delT	uc001gvv.2	-	26	3541	c.3314delA	c.(3313-3315)AACfs	p.N1105fs		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1105	Cytoplasmic (Potential).|IV.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CTGGTATGGGTTTTTGGGAAT	0.532													7	1699	---	---	---	---					
IPO9	55705	broad.mit.edu	37	1	201843998	201844000	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:201843998_201844000delGAG	uc001gwz.2	+	22	2922_2924	c.2872_2874delGAG	c.(2872-2874)GAGdel	p.E962del		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	962					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						ggaggaggaagaggaggaggagg	0.330													19	558	---	---	---	---					
PPP1R15B	84919	broad.mit.edu	37	1	204380466	204380466	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:204380466delA	uc001hav.3	-	1	479	c.74delT	c.(73-75)TTCfs	p.F25fs		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	25					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			TCGCCGAGGGAAAAAGGGTGG	0.622													8	589	---	---	---	---					
CR2	1380	broad.mit.edu	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:207642044delC	uc001hfw.2	+	3	712	c.618delC	c.(616-618)GTCfs	p.V206fs	CR2_uc001hfv.2_Frame_Shift_Del_p.V206fs|CR2_uc009xch.2_Frame_Shift_Del_p.V206fs|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	206	Sushi 3.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GGAGTGCTGTCCCCCCCACAT	0.398													7	1060	---	---	---	---					
CR1L	1379	broad.mit.edu	37	1	207867814	207867814	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:207867814delA	uc001hga.3	+	5	701	c.580delA	c.(580-582)AAAfs	p.K194fs	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	194	Sushi 3.					cytoplasm|extracellular region|membrane					0						AAGCAGAGGGAAAAAGGTGTT	0.507													7	1146	---	---	---	---					
INTS7	25896	broad.mit.edu	37	1	212115191	212115193	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:212115191_212115193delTGC	uc001hiw.1	-	20	2967_2969	c.2862_2864delGCA	c.(2860-2865)CAGCAA>CAA	p.954_955QQ>Q	INTS7_uc009xdb.1_In_Frame_Del_p.934_935QQ>Q|INTS7_uc001hix.1_In_Frame_Del_p.830_831QQ>Q|INTS7_uc001hiy.1_In_Frame_Del_p.940_941QQ>Q|INTS7_uc010pta.1_In_Frame_Del_p.905_906QQ>Q	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	954_955	Gln-rich.				snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		GGCATTGCGTTGCTGCTGCTGCT	0.443													9	1034	---	---	---	---					
PTPN14	5784	broad.mit.edu	37	1	214557049	214557051	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:214557049_214557051delCCT	uc001hkk.1	-	13	2418_2420	c.2147_2149delAGG	c.(2146-2151)GAGGCT>GCT	p.E716del	PTPN14_uc010pty.1_In_Frame_Del_p.E617del	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	716	Poly-Glu.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GATTCTGGAGCCTCCTCCTCCTC	0.626													23	370	---	---	---	---					
PTPN14	5784	broad.mit.edu	37	1	214588042	214588042	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr1:214588042delT	uc001hkk.1	-	4	643	c.372delA	c.(370-372)AAAfs	p.K124fs	PTPN14_uc010pty.1_Frame_Shift_Del_p.K25fs	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	124	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CAAGCACATCTTTTTTGACTT	0.423													7	1072	---	---	---	---					
SFMBT2	57713	broad.mit.edu	37	10	7212995	7212997	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:7212995_7212997delCTC	uc009xio.1	-	20	2528_2530	c.2437_2439delGAG	c.(2437-2439)GAGdel	p.E813del	SFMBT2_uc001ijn.1_In_Frame_Del_p.E813del|SFMBT2_uc010qay.1_In_Frame_Del_p.E648del	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	813					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GAACCAGTCTCTCCTCCTCCTCC	0.596													12	1014	---	---	---	---					
C10orf68	79741	broad.mit.edu	37	10	33018277	33018277	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:33018277delA	uc001iwn.3	+	10	1191	c.718delA	c.(718-720)AAAfs	p.K240fs	C10orf68_uc001iwl.1_Frame_Shift_Del_p.K248fs|C10orf68_uc001iwm.1_Frame_Shift_Del_p.K216fs|C10orf68_uc010qei.1_Frame_Shift_Del_p.K152fs|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	240										skin(2)|ovary(1)	3						TTTAGAAATCAAAAAAAAGGA	0.323													11	491	---	---	---	---					
ERCC6	2074	broad.mit.edu	37	10	50732139	50732141	+	In_Frame_Del	DEL	CCT	-	-	rs4253047	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:50732139_50732141delCCT	uc001jhs.3	-	5	1489_1491	c.1335_1337delAGG	c.(1333-1338)GGAGGT>GGT	p.445_446GG>G	PGBD3_uc001jht.2_5'UTR|PGBD3_uc009xoe.2_In_Frame_Del_p.445_446GG>G|PGBD3_uc001jhu.2_In_Frame_Del_p.445_446GG>G	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	445_446	Gly-rich.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						CACTTTCCGACCTCCTCCTCCTC	0.458								Direct_reversal_of_damage|NER					17	962	---	---	---	---					
A1CF	29974	broad.mit.edu	37	10	52569667	52569669	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:52569667_52569669delAGC	uc001jjj.2	-	12	1806_1808	c.1618_1620delGCT	c.(1618-1620)GCTdel	p.A540del	A1CF_uc010qhn.1_In_Frame_Del_p.A540del|A1CF_uc001jji.2_In_Frame_Del_p.A532del|A1CF_uc001jjh.2_In_Frame_Del_p.A540del|A1CF_uc010qho.1_In_Frame_Del_p.A548del|A1CF_uc009xov.2_In_Frame_Del_p.A532del	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	540					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GGAAagcagtagcagcagcagca	0.433													11	431	---	---	---	---					
PCDH15	65217	broad.mit.edu	37	10	56077158	56077160	+	In_Frame_Del	DEL	GTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:56077158_56077160delGTG	uc001jju.1	-	8	1142_1144	c.747_749delCAC	c.(745-750)ACCACT>ACT	p.249_250TT>T	PCDH15_uc010qhq.1_In_Frame_Del_p.254_255TT>T|PCDH15_uc010qhr.1_In_Frame_Del_p.249_250TT>T|PCDH15_uc010qhs.1_In_Frame_Del_p.254_255TT>T|PCDH15_uc010qht.1_In_Frame_Del_p.249_250TT>T|PCDH15_uc010qhu.1_In_Frame_Del_p.249_250TT>T|PCDH15_uc001jjv.1_In_Frame_Del_p.227_228TT>T|PCDH15_uc010qhv.1_In_Frame_Del_p.249_250TT>T|PCDH15_uc010qhw.1_In_Frame_Del_p.212_213TT>T|PCDH15_uc010qhx.1_In_Frame_Del_p.249_250TT>T|PCDH15_uc010qhy.1_In_Frame_Del_p.254_255TT>T|PCDH15_uc010qhz.1_In_Frame_Del_p.249_250TT>T|PCDH15_uc010qia.1_In_Frame_Del_p.227_228TT>T|PCDH15_uc010qib.1_In_Frame_Del_p.227_228TT>T|PCDH15_uc001jjw.2_In_Frame_Del_p.249_250TT>T	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	249_250	Extracellular (Potential).|Cadherin 2.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding	p.T250N(1)		pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CACTGTGAGAGTGGTGGTGGTGG	0.438										HNSCC(58;0.16)			9	991	---	---	---	---					
ANK3	288	broad.mit.edu	37	10	61828745	61828747	+	In_Frame_Del	DEL	GTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:61828745_61828747delGTG	uc001jky.2	-	37	12084_12086	c.11892_11894delCAC	c.(11890-11895)ACCACT>ACT	p.3964_3965TT>T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3964_3965	Thr-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ggtggtggcagtggtggtggtgg	0.320													8	513	---	---	---	---					
MYST4	23522	broad.mit.edu	37	10	76735895	76735897	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:76735895_76735897delCTC	uc001jwn.1	+	8	2293_2295	c.1800_1802delCTC	c.(1798-1803)CACTCC>CAC	p.S605del	MYST4_uc001jwm.1_Intron|MYST4_uc001jwo.1_Intron|MYST4_uc001jwp.1_Intron	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	605	Poly-Ser.|Negatively regulates HAT activity.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TTATTTCTCACTCCTCCTCCTCT	0.424			T	CREBBP	AML								8	503	---	---	---	---					
ZMIZ1	57178	broad.mit.edu	37	10	81072446	81072446	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:81072446delC	uc001kaf.2	+	25	3716	c.3144delC	c.(3142-3144)GACfs	p.D1048fs	ZMIZ1_uc001kag.2_Frame_Shift_Del_p.D924fs|ZMIZ1_uc010qlq.1_Frame_Shift_Del_p.D114fs	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	1048					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CTTATCTGGACCCCCCCGACC	0.557													8	1309	---	---	---	---					
KIF20B	9585	broad.mit.edu	37	10	91498335	91498337	+	In_Frame_Del	DEL	AAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:91498335_91498337delAAG	uc001kgs.1	+	20	3809_3811	c.3737_3739delAAG	c.(3736-3741)AAAGAA>AAA	p.E1251del	KIF20B_uc001kgr.1_In_Frame_Del_p.E1211del|KIF20B_uc001kgt.1_In_Frame_Del_p.E462del|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1251	Poly-Glu.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						CTTCAATTAAAAGAAGAAGAAGA	0.276													7	379	---	---	---	---					
HELLS	3070	broad.mit.edu	37	10	96331163	96331163	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:96331163delA	uc001kjt.2	+	7	559	c.454delA	c.(454-456)AAAfs	p.K152fs	HELLS_uc001kjs.2_Frame_Shift_Del_p.K136fs|HELLS_uc009xul.2_Frame_Shift_Del_p.K152fs|HELLS_uc009xum.2_Frame_Shift_Del_p.K152fs|HELLS_uc009xun.2_Frame_Shift_Del_p.K28fs|HELLS_uc009xuo.2_Frame_Shift_Del_p.K152fs|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Frame_Shift_Del_p.K14fs|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	152					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		GTCTGTGGCTAAAAAAAATAA	0.214													7	421	---	---	---	---					
FAM178A	55719	broad.mit.edu	37	10	102690753	102690753	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:102690753delT	uc001krt.3	+	9	2896	c.2354delT	c.(2353-2355)ATTfs	p.I785fs	FAM178A_uc001krs.2_Frame_Shift_Del_p.I785fs	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	785											0						ACAGATCAGATTTTTTTGACA	0.378													10	730	---	---	---	---					
NOLC1	9221	broad.mit.edu	37	10	103919000	103919002	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:103919000_103919002delAGC	uc001kuo.2	+	6	893_895	c.658_660delAGC	c.(658-660)AGCdel	p.S227del	NOLC1_uc001kup.2_In_Frame_Del_p.S227del|NOLC1_uc001kuq.2_In_Frame_Del_p.S228del|NOLC1_uc009xxb.1_5'UTR|NOLC1_uc001kur.2_5'UTR	NM_004741	NP_004732	Q14978	NOLC1_HUMAN	nucleolar and coiled-body phosphoprotein 1	227	11 X 12 AA approximate repeats of an acidic serine cluster.|Acidic serine cluster 4.|Interacts with RPA194.				mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		tagcagcagtagcagcagcagca	0.394													8	738	---	---	---	---					
CPXM2	119587	broad.mit.edu	37	10	125528165	125528167	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr10:125528165_125528167delCAG	uc001lhk.1	-	9	1499_1501	c.1174_1176delCTG	c.(1174-1176)CTGdel	p.L392del	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	392	Poly-Leu.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CGAACTGCACCAGCAGCAGCAGC	0.626													11	1093	---	---	---	---					
NLRP6	171389	broad.mit.edu	37	11	281553	281555	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:281553_281555delGAG	uc010qvs.1	+	4	1819_1821	c.1819_1821delGAG	c.(1819-1821)GAGdel	p.E611del	NLRP6_uc010qvt.1_In_Frame_Del_p.E611del	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	611	Poly-Glu.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGAAGAGCCAGAGGAGGAGGAGG	0.670													24	671	---	---	---	---					
PHRF1	57661	broad.mit.edu	37	11	592586	592588	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:592586_592588delGAG	uc001lqe.2	+	6	663_665	c.532_534delGAG	c.(532-534)GAGdel	p.E181del	PHRF1_uc010qwc.1_In_Frame_Del_p.E181del|PHRF1_uc010qwd.1_In_Frame_Del_p.E180del|PHRF1_uc010qwe.1_In_Frame_Del_p.E177del|PHRF1_uc009ybz.1_5'UTR	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	181	Poly-Glu.						RNA polymerase binding|zinc ion binding				0						CAAAGCGAGCGAGGAGGAGGAGG	0.616													8	916	---	---	---	---					
AP2A2	161	broad.mit.edu	37	11	970195	970195	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:970195delA	uc001lss.2	+	3	344	c.163delA	c.(163-165)AAAfs	p.K55fs	AP2A2_uc001lst.1_Frame_Shift_Del_p.K55fs|AP2A2_uc009yco.1_RNA|AP2A2_uc001lsu.1_5'Flank	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	55	Lipid-binding.				axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGGCTATAGTAAAAAAAAGTA	0.488													8	733	---	---	---	---					
NAP1L4	4676	broad.mit.edu	37	11	2991166	2991167	+	Splice_Site	INS	-	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:2991166_2991167insA	uc001lxc.2	-	7	544	c.403_splice	c.e7-1	p.G135_splice	NAP1L4_uc010qxm.1_Splice_Site_p.G135_splice|NAP1L4_uc010qxn.1_Splice_Site_p.G135_splice	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4						nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		CATGTCTCCCTAAAAAAAAGAT	0.416													10	261	---	---	---	---					
APBB1	322	broad.mit.edu	37	11	6432090	6432092	+	In_Frame_Del	DEL	TCC	-	-	rs145320037		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:6432090_6432092delTCC	uc001mdb.1	-	2	586_588	c.486_488delGGA	c.(484-489)GAGGAT>GAT	p.E162del	APBB1_uc001mdc.1_In_Frame_Del_p.E162del|APBB1_uc010rah.1_Intron	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	162	Glu-rich.				apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding	p.E162K(1)		breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		atcatcatcatcctcctcctcct	0.404													9	139	---	---	---	---					
RRP8	23378	broad.mit.edu	37	11	6623336	6623338	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:6623336_6623338delTCC	uc001med.2	-	2	286_288	c.207_209delGGA	c.(205-210)GAGGAA>GAA	p.69_70EE>E	ILK_uc001mee.2_5'Flank|ILK_uc001mef.2_5'Flank|ILK_uc010rap.1_5'Flank|ILK_uc010raq.1_5'Flank|ILK_uc001meg.2_5'Flank|ILK_uc001meh.2_5'Flank	NM_015324	NP_056139	O43159	RRP8_HUMAN	ribosomal RNA processing 8, methyltransferase,	69_70	Poly-Glu.				chromatin modification|chromatin silencing at rDNA|rRNA processing|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	methylated histone residue binding|S-adenosylmethionine-dependent methyltransferase activity				0						CTTCTTCCTTTCCTCCTCCTCCT	0.532													10	382	---	---	---	---					
OR10A5	144124	broad.mit.edu	37	11	6867223	6867225	+	In_Frame_Del	DEL	TTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:6867223_6867225delTTC	uc001met.1	+	1	310_312	c.310_312delTTC	c.(310-312)TTCdel	p.F108del		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCAGATGTATTTCTTCTTCTTCT	0.517													19	666	---	---	---	---					
PSMA1	5682	broad.mit.edu	37	11	14529252	14529254	+	In_Frame_Del	DEL	CAT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:14529252_14529254delCAT	uc001mlk.2	-	9	829_831	c.683_685delATG	c.(682-687)GATGTG>GTG	p.D228del	PSMA1_uc001mll.2_In_Frame_Del_p.D234del|PSMA1_uc010rcp.1_RNA|PSMA1_uc001mlj.2_In_Frame_Del_p.D203del	NM_002786	NP_002777	P25786	PSA1_HUMAN	proteasome alpha 1 subunit isoform 2	228					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|polysome|proteasome core complex, alpha-subunit complex	protein binding|RNA binding|threonine-type endopeptidase activity			upper_aerodigestive_tract(1)|skin(1)	2						AATGGAGACACATCATCATCATC	0.360													9	707	---	---	---	---					
KCNA4	3739	broad.mit.edu	37	11	30034029	30034031	+	In_Frame_Del	DEL	TGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:30034029_30034031delTGG	uc001msk.2	-	2	1347_1349	c.195_197delCCA	c.(193-198)CACCAG>CAG	p.H65del		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	65	Poly-His.					voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCCGCGTGACTGGTGGTGGTGGT	0.660													8	372	---	---	---	---					
APIP	51074	broad.mit.edu	37	11	34910341	34910341	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:34910341delT	uc001mvs.2	-	4	391	c.283delA	c.(283-285)AGCfs	p.S95fs	APIP_uc010reo.1_Frame_Shift_Del_p.S112fs	NM_015957	NP_057041	Q96GX9	MTNB_HUMAN	APAF1 interacting protein	95					apoptosis|L-methionine salvage	cytoplasm	identical protein binding|metal ion binding|methylthioribulose 1-phosphate dehydratase activity				0	all_epithelial(35;0.161)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.000425)			GTACACTGGCTTTTTTTTAGC	0.343													11	439	---	---	---	---					
PAMR1	25891	broad.mit.edu	37	11	35513670	35513670	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:35513670delC	uc001mwg.2	-	3	345	c.302delG	c.(301-303)GGTfs	p.G101fs	PAMR1_uc001mwf.2_Frame_Shift_Del_p.G101fs|PAMR1_uc010rew.1_Frame_Shift_Del_p.G101fs|PAMR1_uc010rex.1_Frame_Shift_Del_p.G61fs	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	101					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						ATCCAAGGTACCCCCCCATGA	0.517													10	1399	---	---	---	---					
ARHGAP1	392	broad.mit.edu	37	11	46702224	46702224	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:46702224delG	uc001ndd.2	-	8	778	c.709delC	c.(709-711)CTGfs	p.L237fs		NM_004308	NP_004299	Q07960	RHG01_HUMAN	Rho GTPase activating protein 1	237	SH3-binding.				Rho protein signal transduction	cytosol|intracellular membrane-bounded organelle	SH3 domain binding|SH3/SH2 adaptor activity			skin(1)	1		Lung NSC(402;1.76e-12)|all_lung(304;1.3e-11)		GBM - Glioblastoma multiforme(35;5.17e-06)|BRCA - Breast invasive adenocarcinoma(625;0.00112)|Lung(87;0.153)		TGGTTGGGCAGGGGGGGCCGT	0.642													7	617	---	---	---	---					
OR8I2	120586	broad.mit.edu	37	11	55861308	55861308	+	Frame_Shift_Del	DEL	T	-	-	rs112181516		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:55861308delT	uc010rix.1	+	1	525	c.525delT	c.(523-525)CATfs	p.H175fs		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					GCATCAATCATTTTTTTTGTG	0.443													9	1056	---	---	---	---					
CPSF7	79869	broad.mit.edu	37	11	61183765	61183767	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:61183765_61183767delAGG	uc001nrq.2	-	6	909_911	c.775_777delCCT	c.(775-777)CCTdel	p.P259del	CPSF7_uc001nro.2_In_Frame_Del_p.P250del|CPSF7_uc001nrp.2_In_Frame_Del_p.P302del|CPSF7_uc001nrr.2_In_Frame_Del_p.P250del|CPSF7_uc001nrs.1_In_Frame_Del_p.P160del	NM_001136040	NP_001129512	Q8N684	CPSF7_HUMAN	pre-mRNA cleavage factor I, 59 kDa subunit	259	Pro-rich.				mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	mRNA cleavage factor complex	nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						AGTGGATACCAGGAGGAGGAGGA	0.611													9	298	---	---	---	---					
FADS2	9415	broad.mit.edu	37	11	61607885	61607887	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:61607885_61607887delTCC	uc001nsl.1	+	3	548_550	c.398_400delTCC	c.(397-402)TTCCTC>TTC	p.L137del	FADS2_uc001nsj.2_In_Frame_Del_p.L115del|FADS2_uc010rlo.1_In_Frame_Del_p.L106del|FADS2_uc001nsk.2_In_Frame_Del_p.L137del	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	137	Helical; (Potential).			LLLL -> RTRG (in Ref. 8; CAB43280).	electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	CACGTGTTCTTCCTCCTCCTCCT	0.537													11	1110	---	---	---	---					
MRPL48	51642	broad.mit.edu	37	11	73555855	73555857	+	In_Frame_Del	DEL	AAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:73555855_73555857delAAG	uc001ouh.3	+	5	305_307	c.205_207delAAG	c.(205-207)AAGdel	p.K72del	MRPL48_uc009ytt.2_5'UTR|MRPL48_uc010rri.1_In_Frame_Del_p.K54del|MRPL48_uc009ytu.2_5'UTR	NM_016055	NP_057139	Q96GC5	RM48_HUMAN	mitochondrial ribosomal protein L48 precursor	72	Poly-Lys.				translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						TCTTCAGCCCAAGAAGAAGAAGG	0.305													7	394	---	---	---	---					
MRE11A	4361	broad.mit.edu	37	11	94153333	94153335	+	In_Frame_Del	DEL	ATC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:94153333_94153335delATC	uc001peu.2	-	20	2272_2274	c.2083_2085delGAT	c.(2083-2085)GATdel	p.D695del	MRE11A_uc001pev.2_In_Frame_Del_p.D667del|MRE11A_uc009ywj.2_In_Frame_Del_p.D698del	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	695					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				TCATAAAAGGATCATCATCATCA	0.325								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				7	521	---	---	---	---					
DDX10	1662	broad.mit.edu	37	11	108559769	108559769	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:108559769delT	uc001pkm.2	+	7	1020	c.955delT	c.(955-957)TTTfs	p.F319fs	DDX10_uc001pkl.1_Frame_Shift_Del_p.F319fs	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	319	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		GAGCATTGTATTTTTTTCCAG	0.353			T	NUP98	AML*								10	1782	---	---	---	---					
CD3G	917	broad.mit.edu	37	11	118220583	118220583	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:118220583delA	uc001psu.2	+	3	285	c.205delA	c.(205-207)AAAfs	p.K69fs	CD3G_uc009zaa.1_Frame_Shift_Del_p.K9fs	NM_000073	NP_000064	P09693	CD3G_HUMAN	CD3G antigen, gamma polypeptide precursor	69	Extracellular (Potential).|Ig-like.				establishment or maintenance of cell polarity|protein complex assembly|protein transport|regulation of apoptosis|T cell activation|T cell costimulation|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	protein heterodimerization activity|receptor signaling complex scaffold activity|T cell receptor binding|transmembrane receptor activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		AACTGAAGATAAAAAAAAATG	0.403													16	461	---	---	---	---					
CBL	867	broad.mit.edu	37	11	119149356	119149358	+	In_Frame_Del	DEL	ATG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:119149356_119149358delATG	uc001pwe.2	+	9	1502_1504	c.1364_1366delATG	c.(1363-1368)TATGAT>TAT	p.D460del		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	460	Asp/Glu-rich (acidic).				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding	p.D460del(1)|p.E366_K477del(1)		haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		TCCCCAAATTATGATGATGATGA	0.473									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				7	366	---	---	---	---					
PVRL1	5818	broad.mit.edu	37	11	119535678	119535680	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr11:119535678_119535680delCCT	uc001pwv.2	-	6	1503_1505	c.1331_1333delAGG	c.(1330-1335)GAGGGC>GGC	p.E444del	PVRL1_uc001pwu.1_Intron	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	444	Poly-Glu.|Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		CCTCCACCGCcctcctcctcctc	0.576													9	130	---	---	---	---					
WNT5B	81029	broad.mit.edu	37	12	1740530	1740532	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:1740530_1740532delCTG	uc009zdq.2	+	2	252_254	c.10_12delCTG	c.(10-12)CTGdel	p.L7del	WNT5B_uc001qjj.2_In_Frame_Del_p.L7del|WNT5B_uc001qjk.2_In_Frame_Del_p.L7del|WNT5B_uc001qjl.2_In_Frame_Del_p.L7del	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	7					angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			CATGCCCAGCCTGCTGCTGCTGT	0.601													9	992	---	---	---	---					
C1S	716	broad.mit.edu	37	12	7173239	7173239	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:7173239delA	uc001qsj.2	+	10	1555	c.836delA	c.(835-837)CAAfs	p.Q279fs	C1S_uc001qsk.2_Frame_Shift_Del_p.Q279fs|C1S_uc001qsl.2_Frame_Shift_Del_p.Q279fs|C1S_uc009zfr.2_Frame_Shift_Del_p.Q112fs|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	279	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	CTAACAGGGCAAAAAAAGGGC	0.423													7	527	---	---	---	---					
PLEKHA5	54477	broad.mit.edu	37	12	19514517	19514518	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:19514517_19514518insA	uc001reb.2	+	23	3073_3074	c.2987_2988insA	c.(2986-2988)TTAfs	p.L996fs	PLEKHA5_uc010sie.1_Frame_Shift_Ins_p.L1157fs|PLEKHA5_uc001rea.2_Frame_Shift_Ins_p.L1054fs|PLEKHA5_uc009zin.2_Frame_Shift_Ins_p.L754fs|PLEKHA5_uc010sif.1_Frame_Shift_Ins_p.L985fs|PLEKHA5_uc010sig.1_Frame_Shift_Ins_p.L978fs|PLEKHA5_uc010sih.1_Frame_Shift_Ins_p.L951fs|PLEKHA5_uc001rec.1_Frame_Shift_Ins_p.L805fs|PLEKHA5_uc009zio.2_Frame_Shift_Ins_p.L262fs	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	996							1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					ATTCTACAGTTAAAAAAAACTG	0.248													7	236	---	---	---	---					
PRICKLE1	144165	broad.mit.edu	37	12	42853801	42853803	+	In_Frame_Del	DEL	GAG	-	-	rs35854729	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:42853801_42853803delGAG	uc010skv.1	-	8	2591_2593	c.2304_2306delCTC	c.(2302-2307)TCCTCT>TCT	p.768_769SS>S	PRICKLE1_uc001rnl.2_In_Frame_Del_p.768_769SS>S|PRICKLE1_uc010skw.1_In_Frame_Del_p.768_769SS>S|PRICKLE1_uc001rnm.2_In_Frame_Del_p.768_769SS>S|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	768_769	Ser-rich.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		CGAGTCGGAAGAGGAGGAGGAGG	0.507													7	867	---	---	---	---					
CCNT1	904	broad.mit.edu	37	12	49087434	49087436	+	In_Frame_Del	DEL	ATG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:49087434_49087436delATG	uc001rse.1	-	9	1884_1886	c.1561_1563delCAT	c.(1561-1563)CATdel	p.H521del	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_In_Frame_Del_p.H236del	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	521	His-rich.				cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						AGTGGTGATTATGATGATGATGA	0.443													61	2213	---	---	---	---					
LIMA1	51474	broad.mit.edu	37	12	50594561	50594561	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:50594561delT	uc001rwj.3	-	7	1145	c.971delA	c.(970-972)AAGfs	p.K324fs	LIMA1_uc001rwg.3_Frame_Shift_Del_p.K22fs|LIMA1_uc001rwh.3_Frame_Shift_Del_p.K164fs|LIMA1_uc001rwi.3_Frame_Shift_Del_p.K164fs|LIMA1_uc001rwk.3_Frame_Shift_Del_p.K324fs|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	324					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						TCAACCTACCTTTTCCCCTTC	0.443													7	2110	---	---	---	---					
OR10A7	121364	broad.mit.edu	37	12	55615114	55615116	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:55615114_55615116delCTT	uc010spf.1	+	1	306_308	c.306_308delCTT	c.(304-309)TACTTC>TAC	p.F107del		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						CCCAGATGTACTTCTTCTTCTTC	0.414													18	1073	---	---	---	---					
SYCP3	50511	broad.mit.edu	37	12	102122901	102122901	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:102122901delT	uc001tiq.2	-	8	775	c.643delA	c.(643-645)ATTfs	p.I215fs	CHPT1_uc001tip.1_3'UTR|SYCP3_uc001tir.2_Frame_Shift_Del_p.I215fs|SYCP3_uc001tis.2_Frame_Shift_Del_p.I215fs	NM_153694	NP_710161	Q8IZU3	SYCP3_HUMAN	synaptonemal complex protein 3	215	Potential.|Gln-rich.				cell division|male meiosis I|spermatogenesis, exchange of chromosomal proteins	nucleus	DNA binding				0						TCCATCATAATTTTTTTTTGC	0.259													9	225	---	---	---	---					
POP5	51367	broad.mit.edu	37	12	121017154	121017156	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:121017154_121017156delCTC	uc001tys.2	-	5	489_491	c.457_459delGAG	c.(457-459)GAGdel	p.E153del	POP5_uc001tyt.2_In_Frame_Del_p.E103del	NM_015918	NP_057002	Q969H6	POP5_HUMAN	processing of precursor 5 isoform a	153					tRNA processing		protein binding|ribonuclease P activity				0	all_neural(191;0.077)|Medulloblastoma(191;0.0922)					CCTCACCTGACTCCTCCTCCTCC	0.517													9	817	---	---	---	---					
MPHOSPH9	10198	broad.mit.edu	37	12	123706321	123706322	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:123706321_123706322insA	uc001uel.2	-	1	120_121	c.13_14insT	c.(13-15)TCTfs	p.S5fs	MPHOSPH9_uc010tal.1_5'UTR|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_5'UTR	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	5					M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		ACTGCTTAGAGAAAAAAAACCC	0.371													8	459	---	---	---	---					
TMEM132B	114795	broad.mit.edu	37	12	125834096	125834096	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr12:125834096delT	uc001uhe.1	+	2	159	c.151delT	c.(151-153)TTTfs	p.F51fs		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	51	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGAGGAGTCCTTTTTCCTTAA	0.527													9	1020	---	---	---	---					
TPTE2	93492	broad.mit.edu	37	13	20041394	20041394	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:20041394delA	uc001umd.2	-	8	694	c.483delT	c.(481-483)TTTfs	p.F161fs	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Intron|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	161	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ACTTAATGTCAAAAAAAATGT	0.303													23	512	---	---	---	---					
GSX1	219409	broad.mit.edu	37	13	28367927	28367929	+	In_Frame_Del	DEL	GGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:28367927_28367929delGGC	uc001urr.1	+	2	685_687	c.637_639delGGC	c.(637-639)GGCdel	p.G218del		NM_145657	NP_663632	Q9H4S2	GSX1_HUMAN	GS homeobox 1	218	Poly-Gly.				positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung SC(185;0.0161)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0402)|all cancers(112;0.0404)|OV - Ovarian serous cystadenocarcinoma(117;0.197)		CAACCATCgtggcggcggcggcg	0.463													10	311	---	---	---	---					
B3GALTL	145173	broad.mit.edu	37	13	31803392	31803392	+	Frame_Shift_Del	DEL	A	-	-	rs141154947		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:31803392delA	uc010aaz.2	+	4	341	c.231delA	c.(229-231)TTAfs	p.L77fs		NM_194318	NP_919299	Q6Y288	B3GLT_HUMAN	beta 1,3-galactosyltransferase-like	77	Lumenal (Potential).				fucose metabolic process	endoplasmic reticulum membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2		Lung SC(185;0.0257)		all cancers(112;0.00436)|Epithelial(112;0.0285)|OV - Ovarian serous cystadenocarcinoma(117;0.0512)|GBM - Glioblastoma multiforme(144;0.184)		CAGAGCAGTTAAAAAAAAGCA	0.373													7	414	---	---	---	---					
EEF1DP3	196549	broad.mit.edu	37	13	32527507	32527508	+	RNA	DEL	GT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:32527507_32527508delGT	uc001utu.2	+	4		c.1265_1266delGT			EEF1DP3_uc010tdv.1_Intron|uc001utv.2_RNA					Homo sapiens similar to hypothetical protein FLJ20897, mRNA (cDNA clone IMAGE:5267252).												0						TCTGGCCTGAGTGTGTGTGTGT	0.460													11	299	---	---	---	---					
ZC3H13	23091	broad.mit.edu	37	13	46542016	46542017	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:46542016_46542017delCT	uc010tfw.1	-	14	3949_3950	c.3943_3944delAG	c.(3943-3945)AGGfs	p.R1315fs	ZC3H13_uc001vaq.2_5'UTR|ZC3H13_uc001vas.1_Frame_Shift_Del_p.R1315fs	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	1315	Potential.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		cgtatctctcctctctctctcg	0.178													12	430	---	---	---	---					
SLAIN1	122060	broad.mit.edu	37	13	78320722	78320722	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:78320722delA	uc010thy.1	+	4	541	c.498delA	c.(496-498)GGAfs	p.G166fs	SLAIN1_uc001vkk.1_Frame_Shift_Del_p.G89fs|SLAIN1_uc001vkl.1_Frame_Shift_Del_p.G45fs|SLAIN1_uc010thz.1_Frame_Shift_Del_p.G44fs|SLAIN1_uc010aex.1_Intron|SLAIN1_uc010aey.1_Intron|SLAIN1_uc001vkm.2_Frame_Shift_Del_p.G45fs	NM_144595	NP_653196	Q8ND83	SLAI1_HUMAN	SLAIN motif family, member 1 B	308										ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0853)		TGAGTTCAGGAAAAAAAGGGA	0.388													9	637	---	---	---	---					
ABCC4	10257	broad.mit.edu	37	13	95696016	95696016	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr13:95696016delT	uc001vmd.3	-	29	3774	c.3655delA	c.(3655-3657)ATCfs	p.I1219fs	ABCC4_uc010afj.2_Intron|ABCC4_uc010afk.2_Frame_Shift_Del_p.I1172fs	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1219	ABC transporter 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TTCTCCCGGATTTTTTTTTGT	0.378													10	623	---	---	---	---					
OR4L1	122742	broad.mit.edu	37	14	20528881	20528881	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:20528881delA	uc001vwn.1	+	1	678	c.678delA	c.(676-678)CCAfs	p.P226fs		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TCAGTGTACCAAAAAAATCAT	0.438													8	830	---	---	---	---					
RNASE7	84659	broad.mit.edu	37	14	21511566	21511566	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:21511566delA	uc001vzk.3	+	2	672	c.415delA	c.(415-417)AAAfs	p.K139fs	NDRG2_uc010tll.1_Intron|RNASE7_uc001vzl.2_RNA	NM_032572	NP_115961	Q9H1E1	RNAS7_HUMAN	ribonuclease, RNase A family, 7 precursor	139					defense response to bacterium|innate immune response	extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(1)	1	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;3.42e-11)|Epithelial(56;5.57e-09)|all cancers(55;2.36e-08)	GBM - Glioblastoma multiforme(265;0.0191)		GCCTCCCCAGAAAAAGGACTC	0.502													8	750	---	---	---	---					
SALL2	6297	broad.mit.edu	37	14	21991334	21991336	+	In_Frame_Del	DEL	GGT	-	-	rs113881459		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:21991334_21991336delGGT	uc001wbe.2	-	2	2808_2810	c.2526_2528delACC	c.(2524-2529)CCACCT>CCT	p.842_843PP>P	SALL2_uc010tly.1_In_Frame_Del_p.840_841PP>P|SALL2_uc010tlz.1_In_Frame_Del_p.705_706PP>P|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_In_Frame_Del_p.707_708PP>P|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	842_843	Poly-Pro.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		CAGGCTGTCAGGTGGTGGTGGTG	0.571													8	413	---	---	---	---					
LRP10	26020	broad.mit.edu	37	14	23341527	23341529	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:23341527_23341529delCCT	uc001whd.2	+	1	568_570	c.15_17delCCT	c.(13-18)ACCCTC>ACC	p.L11del	LRP10_uc001whe.2_5'Flank	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	11					endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		TGTTGGCCACCCTCCTCCTCCTC	0.670													30	566	---	---	---	---					
REC8	9985	broad.mit.edu	37	14	24646921	24646921	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:24646921delC	uc001wmr.2	+	13	1248	c.821delC	c.(820-822)ACCfs	p.T274fs	REC8_uc001wms.2_Frame_Shift_Del_p.T274fs	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	274	Pro-rich.|Glu-rich.				mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		GCAGAGGTGACCCCCCCGGAG	0.612													7	497	---	---	---	---					
ADCY4	196883	broad.mit.edu	37	14	24803757	24803759	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:24803757_24803759delCAG	uc001wov.2	-	1	106_108	c.100_102delCTG	c.(100-102)CTGdel	p.L34del	ADCY4_uc001wow.2_In_Frame_Del_p.L34del|ADCY4_uc010toh.1_5'UTR|ADCY4_uc001wox.2_In_Frame_Del_p.L34del|ADCY4_uc001woy.2_In_Frame_Del_p.L34del|ADCY4_uc001woz.3_In_Frame_Del_p.L34del	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	34	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		GCACGATCCCCAGCAGCAGCAGC	0.700													7	49	---	---	---	---					
FANCM	57697	broad.mit.edu	37	14	45642288	45642289	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:45642288_45642289delCT	uc001wwd.3	+	13	2290_2291	c.2191_2192delCT	c.(2191-2193)CTCfs	p.L731fs	FANCM_uc010anf.2_Frame_Shift_Del_p.L705fs|FANCM_uc001wwe.3_Frame_Shift_Del_p.L267fs|FANCM_uc010ang.2_5'Flank	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	731					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						AATTCATCAACTCTCTCTCTCT	0.347								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				13	553	---	---	---	---					
FANCM	57697	broad.mit.edu	37	14	45645955	45645955	+	Frame_Shift_Del	DEL	A	-	-	rs143681767		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:45645955delA	uc001wwd.3	+	14	4097	c.3998delA	c.(3997-3999)CAAfs	p.Q1333fs	FANCM_uc010anf.2_Frame_Shift_Del_p.Q1307fs|FANCM_uc001wwe.3_Frame_Shift_Del_p.Q869fs|FANCM_uc010ang.2_Frame_Shift_Del_p.Q547fs	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1333					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TTACCAGTGCAAAAAAAAGTT	0.328								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				8	339	---	---	---	---					
OTX2	5015	broad.mit.edu	37	14	57271049	57271049	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:57271049delG	uc001xcp.2	-	2	277	c.106delC	c.(106-108)CGGfs	p.R36fs	OTX2_uc010aou.2_Frame_Shift_Del_p.R36fs|OTX2_uc001xcq.2_Frame_Shift_Del_p.R44fs	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	36					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					CGCTGTTTCCGGGGGGTGGCT	0.632													7	319	---	---	---	---					
C14orf39	317761	broad.mit.edu	37	14	60903565	60903565	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:60903565delA	uc001xez.3	-	18	1872	c.1762delT	c.(1762-1764)TGAfs	p.*588fs	C14orf39_uc010apo.2_Frame_Shift_Del_p.*299fs	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	588										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TGACTAGCTCAAAAAAAAGTA	0.289													8	695	---	---	---	---					
SYNE2	23224	broad.mit.edu	37	14	64488704	64488704	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:64488704delA	uc001xgm.2	+	37	5712	c.5482delA	c.(5482-5484)AAAfs	p.K1828fs	SYNE2_uc001xgl.2_Frame_Shift_Del_p.K1828fs	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1828	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ATTTAATACCAAAAAAAGTGT	0.318													7	776	---	---	---	---					
SIPA1L1	26037	broad.mit.edu	37	14	72190482	72190484	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:72190482_72190484delTCC	uc001xms.2	+	16	4738_4740	c.4390_4392delTCC	c.(4390-4392)TCCdel	p.S1468del	SIPA1L1_uc001xmt.2_In_Frame_Del_p.S1447del|SIPA1L1_uc001xmu.2_In_Frame_Del_p.S1447del|SIPA1L1_uc001xmv.2_In_Frame_Del_p.S1468del|SIPA1L1_uc010ttm.1_In_Frame_Del_p.S922del|SIPA1L1_uc001xmw.2_In_Frame_Del_p.S233del	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1468	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ctcctcctcttcctcctcctcct	0.468													20	839	---	---	---	---					
MLH3	27030	broad.mit.edu	37	14	75514338	75514338	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:75514338delT	uc001xrd.1	-	2	2237	c.2021delA	c.(2020-2022)AATfs	p.N674fs	MLH3_uc001xre.1_Frame_Shift_Del_p.N674fs|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	674					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		CGTTCTGCAATTTTTTTTGTT	0.348								MMR					8	521	---	---	---	---					
FLVCR2	55640	broad.mit.edu	37	14	76112753	76112755	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:76112753_76112755delGAG	uc001xrs.2	+	10	1895_1897	c.1519_1521delGAG	c.(1519-1521)GAGdel	p.E511del	FLVCR2_uc010tvd.1_In_Frame_Del_p.E306del	NM_017791	NP_060261	Q9UPI3	FLVC2_HUMAN	feline leukemia virus subgroup C cellular	511	Poly-Glu.				transmembrane transport	integral to membrane|plasma membrane	heme binding|heme transporter activity				0				BRCA - Breast invasive adenocarcinoma(234;0.029)		GAAACTCCAAGAGGAGGAGGAGG	0.542													10	418	---	---	---	---					
BTBD7	55727	broad.mit.edu	37	14	93761193	93761193	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:93761193delT	uc001ybo.2	-	3	499	c.173delA	c.(172-174)AAGfs	p.K58fs	BTBD7_uc010aur.2_5'UTR|BTBD7_uc010two.1_5'UTR|BTBD7_uc001ybp.2_Intron|BTBD7_uc001ybq.3_5'UTR|BTBD7_uc001ybr.2_Frame_Shift_Del_p.K58fs	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	58										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		AGAGGTTCTCTTTTTTTTGTC	0.438													13	863	---	---	---	---					
DDX24	57062	broad.mit.edu	37	14	94517596	94517598	+	In_Frame_Del	DEL	TCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:94517596_94517598delTCT	uc001ycj.2	-	9	2618_2620	c.2519_2521delAGA	c.(2518-2523)AAGACA>ACA	p.K840del	DDX24_uc010twq.1_In_Frame_Del_p.K797del|DDX24_uc010twr.1_In_Frame_Del_p.K590del	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	840	Poly-Lys.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		GGCTTCTTTGTCTTCTTCTTCTT	0.512											OREG0022891	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	490	---	---	---	---					
CCNK	8812	broad.mit.edu	37	14	99969244	99969246	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:99969244_99969246delCAG	uc001ygi.3	+	8	1064_1066	c.934_936delCAG	c.(934-936)CAGdel	p.Q315del	CCNK_uc001ygg.3_Intron	NM_001099402	NP_001092872	O75909	CCNK_HUMAN	cyclin K isoform 1	315	Poly-Gln.				cell division|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein kinase binding				0		all_cancers(154;0.224)|all_epithelial(191;0.0643)|Melanoma(154;0.0866)				GCAACCAGCCCAGCAGCAGCAGC	0.621													7	669	---	---	---	---					
BEGAIN	57596	broad.mit.edu	37	14	101005271	101005273	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr14:101005271_101005273delCCT	uc010txa.1	-	6	961_963	c.815_817delAGG	c.(814-819)GAGGCC>GCC	p.E272del	BEGAIN_uc001yhp.2_In_Frame_Del_p.E208del|BEGAIN_uc001yhq.2_In_Frame_Del_p.E272del	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	272						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				GCCGCCTCGGCCTCCTCCTCCTC	0.724													9	130	---	---	---	---					
UBE3A	7337	broad.mit.edu	37	15	25601871	25601871	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:25601871delT	uc001zaq.2	-	6	1935	c.1935delA	c.(1933-1935)AAAfs	p.K645fs	uc001zae.2_Intron|UBE3A_uc001zar.2_Frame_Shift_Del_p.K622fs|UBE3A_uc001zas.2_Frame_Shift_Del_p.K642fs|UBE3A_uc001zat.2_Frame_Shift_Del_p.K622fs	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	645					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		GAAAAGTTCCTTTTTTCCCCA	0.338													8	1414	---	---	---	---					
OCA2	4948	broad.mit.edu	37	15	28200305	28200305	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:28200305delT	uc001zbh.3	-	17	1951	c.1841delA	c.(1840-1842)AAGfs	p.K614fs	OCA2_uc010ayv.2_Frame_Shift_Del_p.K590fs	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	614	Cytoplasmic (Potential).		K -> N (in OCA2).|K -> E (in OCA2).		eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GCTGGGTACCTTTTTTTGGAG	0.443									Oculocutaneous_Albinism				11	816	---	---	---	---					
MTMR15	22909	broad.mit.edu	37	15	31196894	31196894	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:31196894delA	uc001zff.2	+	2	319	c.28delA	c.(28-30)AAAfs	p.K10fs	MTMR15_uc001zfc.3_Frame_Shift_Del_p.K10fs|MTMR15_uc010azw.2_Frame_Shift_Del_p.K10fs|MTMR15_uc001zfd.3_Frame_Shift_Del_p.K10fs|MTMR15_uc001zfe.2_5'UTR	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	10					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		ACCTCCTGACAAAAAAAGGCC	0.353								Direct_reversal_of_damage|Editing_and_processing_nucleases					7	725	---	---	---	---					
EIF2AK4	440275	broad.mit.edu	37	15	40282508	40282508	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:40282508delT	uc001zkm.1	+	16	2611	c.2561delT	c.(2560-2562)ATTfs	p.I854fs	EIF2AK4_uc010bbj.1_Frame_Shift_Del_p.I555fs|EIF2AK4_uc001zkn.1_5'Flank	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	854	Protein kinase 2.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		CCTGTCAACATTTTTTTGGAT	0.358													8	1635	---	---	---	---					
ADAL	161823	broad.mit.edu	37	15	43641115	43641115	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:43641115delA	uc010udo.1	+	10	1137	c.563delA	c.(562-564)CAAfs	p.Q188fs	ADAL_uc001zrh.2_Frame_Shift_Del_p.Q215fs|ADAL_uc001zri.1_Frame_Shift_Del_p.Q100fs	NM_001159280	NP_001152752	Q6DHV7	ADAL_HUMAN	adenosine deaminase-like isoform 1	215					adenosine catabolic process|inosine biosynthetic process|purine ribonucleoside monophosphate biosynthetic process		adenosine deaminase activity|metal ion binding				0		all_cancers(109;7.96e-11)|all_epithelial(112;2.96e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;9.31e-07)		ATTCCAAACCAAAAAAAAGAA	0.453													8	457	---	---	---	---					
CTDSPL2	51496	broad.mit.edu	37	15	44778873	44778874	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:44778873_44778874insT	uc001ztr.2	+	4	866_867	c.450_451insT	c.(448-453)AACTTTfs	p.N150fs	CTDSPL2_uc001zts.2_Frame_Shift_Ins_p.N150fs|CTDSPL2_uc001ztt.2_Frame_Shift_Ins_p.N150fs|CTDSPL2_uc010bdv.2_Frame_Shift_Ins_p.N150fs	NM_016396	NP_057480	Q05D32	CTSL2_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	150_151							phosphoprotein phosphatase activity				0		all_cancers(109;4.36e-14)|all_epithelial(112;9.8e-12)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.0122)		all cancers(107;1.02e-20)|GBM - Glioblastoma multiforme(94;1.49e-06)|COAD - Colon adenocarcinoma(120;0.0857)|Colorectal(105;0.0905)		CTGTCTTCAACTTTTTTTCACC	0.297													7	916	---	---	---	---					
CCPG1	9236	broad.mit.edu	37	15	55651780	55651781	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:55651780_55651781delTA	uc002acv.1	-	8	2355_2356	c.2190_2191delTA	c.(2188-2193)TATAGAfs	p.Y730fs	CCPG1_uc002acy.2_Frame_Shift_Del_p.Y730fs|CCPG1_uc002acu.1_Frame_Shift_Del_p.Y586fs|CCPG1_uc002acw.1_Frame_Shift_Del_p.Y455fs|CCPG1_uc002acx.2_Frame_Shift_Del_p.Y347fs|CCPG1_uc010bfk.1_Frame_Shift_Del_p.Y730fs|CCPG1_uc002acz.1_Frame_Shift_Del_p.Y730fs	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	730_731	Lumenal (Potential).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		AAGAAGTGTCTATATATATATT	0.332													9	247	---	---	---	---					
VPS13C	54832	broad.mit.edu	37	15	62244050	62244050	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:62244050delT	uc002agz.2	-	39	4503	c.4429delA	c.(4429-4431)ATTfs	p.I1477fs	VPS13C_uc002aha.2_Frame_Shift_Del_p.I1434fs|VPS13C_uc002ahb.1_Frame_Shift_Del_p.I1477fs|VPS13C_uc002ahc.1_Frame_Shift_Del_p.I1434fs	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1477					protein localization					ovary(2)	2						TGCATACTAATTTTTTTTAGA	0.333													9	327	---	---	---	---					
SLC24A1	9187	broad.mit.edu	37	15	65943128	65943130	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:65943128_65943130delGAG	uc010ujf.1	+	7	2928_2930	c.2641_2643delGAG	c.(2641-2643)GAGdel	p.E890del	SLC24A1_uc010ujd.1_In_Frame_Del_p.E872del|SLC24A1_uc010uje.1_In_Frame_Del_p.E872del|SLC24A1_uc010ujg.1_In_Frame_Del_p.E890del|SLC24A1_uc010ujh.1_In_Frame_Del_p.E872del|SLC24A1_uc010uji.1_In_Frame_Del_p.E217del	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	890	Cytoplasmic (Potential).|Poly-Glu.				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						gcaggaggaagaggaggaggagg	0.281													11	154	---	---	---	---					
SNAPC5	10302	broad.mit.edu	37	15	66786799	66786801	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:66786799_66786801delTCC	uc002apu.1	-	3	347_349	c.270_272delGGA	c.(268-273)GAGGAA>GAA	p.90_91EE>E	SNAPC5_uc002apt.1_5'Flank	NM_006049	NP_006040	O75971	SNPC5_HUMAN	small nuclear RNA activating complex,	90_91	Poly-Glu.				transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase III promoter	nucleoplasm	sequence-specific DNA binding transcription factor activity				0						ttcttcctcttcctcctcctcct	0.384													7	631	---	---	---	---					
ADPGK	83440	broad.mit.edu	37	15	73044826	73044827	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:73044826_73044827insT	uc002avg.3	-	7	1443_1444	c.1349_1350insA	c.(1348-1350)AAGfs	p.K450fs	ADPGK_uc002ave.3_Frame_Shift_Ins_p.K175fs|ADPGK_uc010ukw.1_Frame_Shift_Ins_p.K392fs|ADPGK_uc002avf.3_Frame_Shift_Ins_p.K449fs|ADPGK_uc002avi.3_Frame_Shift_Ins_p.K327fs|ADPGK_uc002avh.3_Frame_Shift_Ins_p.K211fs	NM_031284	NP_112574	Q9BRR6	ADPGK_HUMAN	ADP-dependent glucokinase	450	ADPK.				glycolysis	extracellular region	ADP-specific glucokinase activity|metal ion binding				0						CTACTACTGGCTTGTTTGGGTT	0.490													8	906	---	---	---	---					
CPLX3	594855	broad.mit.edu	37	15	75122558	75122560	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:75122558_75122560delGAG	uc002ayu.1	+	3	434_436	c.340_342delGAG	c.(340-342)GAGdel	p.E118del		NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	118						cell junction|synapse	syntaxin binding				0						GGAGGACACAGAGGAGGAGGAGG	0.616													13	527	---	---	---	---					
MFGE8	4240	broad.mit.edu	37	15	89453139	89453139	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:89453139delT	uc002bng.3	-	2	202	c.89delA	c.(88-90)AACfs	p.N30fs	MFGE8_uc002bnf.3_5'UTR|MFGE8_uc002bnh.3_Frame_Shift_Del_p.N30fs|MFGE8_uc010bnn.2_Frame_Shift_Del_p.N22fs|MFGE8_uc010upq.1_Intron|MFGE8_uc010upr.1_Frame_Shift_Del_p.N30fs|MFGE8_uc010bno.2_Intron	NM_005928	NP_005919	Q08431	MFGM_HUMAN	milk fat globule-EGF factor 8 protein isoform a	30	EGF-like.				angiogenesis|cell adhesion|interspecies interaction between organisms|single fertilization					ovary(1)	1	Lung NSC(78;0.0392)|all_lung(78;0.077)					GTGGCAGGGGTTTTTGGAACA	0.547													7	782	---	---	---	---					
IQGAP1	8826	broad.mit.edu	37	15	91019925	91019925	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:91019925delA	uc002bpl.1	+	24	2916	c.2815delA	c.(2815-2817)AAAfs	p.K939fs		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	939					energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			AAAACTTACCAAAAAAAATAA	0.363													8	741	---	---	---	---					
MAN2A2	4122	broad.mit.edu	37	15	91462881	91462881	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:91462881delT	uc010bnz.2	+	23	3432	c.3317delT	c.(3316-3318)CTTfs	p.L1106fs	MAN2A2_uc002bqc.2_Frame_Shift_Del_p.L1106fs|MAN2A2_uc010uql.1_Frame_Shift_Del_p.L768fs|MAN2A2_uc010uqm.1_Frame_Shift_Del_p.L685fs|MAN2A2_uc010uqn.1_RNA	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	1106					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CTGGGCAGCCTTTTCCATGGC	0.547													7	1728	---	---	---	---					
C15orf51	196968	broad.mit.edu	37	15	100340032	100340034	+	RNA	DEL	AGA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr15:100340032_100340034delAGA	uc010urx.1	-	4		c.893_895delTCT			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_RNA|uc002bvq.2_RNA|uc002bvt.1_5'Flank	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						AGCAGCTCTGAGAAGATGAACTC	0.606													7	131	---	---	---	---					
C16orf71	146562	broad.mit.edu	37	16	4796953	4796955	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:4796953_4796955delGAG	uc002cxn.2	+	8	1669_1671	c.1207_1209delGAG	c.(1207-1209)GAGdel	p.E409del		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	409										central_nervous_system(1)	1						CTCTGACAGTGAGGAGGAGGAGG	0.611													7	96	---	---	---	---					
RSL1D1	26156	broad.mit.edu	37	16	11931770	11931770	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:11931770delT	uc002dbp.1	-	9	1420	c.1347delA	c.(1345-1347)AAAfs	p.K449fs	RSL1D1_uc010buv.1_Frame_Shift_Del_p.K448fs|RSL1D1_uc010uyw.1_Frame_Shift_Del_p.K229fs	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	449					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						gtctcgcatcttttttcccca	0.164													8	1906	---	---	---	---					
C16orf62	57020	broad.mit.edu	37	16	19580800	19580802	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:19580800_19580802delTCC	uc002dgn.1	+	3	184_186	c.172_174delTCC	c.(172-174)TCCdel	p.S64del	C16orf62_uc002dgo.1_In_Frame_Del_p.S64del|C16orf62_uc010vas.1_5'UTR|C16orf62_uc002dgm.1_In_Frame_Del_p.S64del	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	64	Ser-rich.					integral to membrane				ovary(1)	1						TTCTTCCACGTCCTCCTCCTCCT	0.562													15	456	---	---	---	---					
RBBP6	5930	broad.mit.edu	37	16	24583566	24583568	+	In_Frame_Del	DEL	AAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:24583566_24583568delAAG	uc002dmh.2	+	18	6219_6221	c.5179_5181delAAG	c.(5179-5181)AAGdel	p.K1733del	RBBP6_uc002dmi.2_In_Frame_Del_p.K1699del|RBBP6_uc010bxr.2_In_Frame_Del_p.K893del|RBBP6_uc002dmk.2_In_Frame_Del_p.K1566del	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1733					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		tcaggacagcaagaagaagaaga	0.241													8	198	---	---	---	---					
RABEP2	79874	broad.mit.edu	37	16	28931200	28931202	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:28931200_28931202delCTG	uc002drq.2	-	3	385_387	c.337_339delCAG	c.(337-339)CAGdel	p.Q113del	uc010vct.1_Intron|RABEP2_uc010vdf.1_In_Frame_Del_p.Q42del|RABEP2_uc010byn.2_In_Frame_Del_p.Q113del|RABEP2_uc002drr.2_In_Frame_Del_p.Q113del	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	113	Poly-Gln.|Potential.				endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						CCTCACAGTCCTGCTGCTGCTGC	0.527													9	363	---	---	---	---					
CD2BP2	10421	broad.mit.edu	37	16	30365550	30365552	+	In_Frame_Del	DEL	CAT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:30365550_30365552delCAT	uc002dxr.2	-	2	423_425	c.170_172delATG	c.(169-174)GATGGG>GGG	p.D57del	CD2BP2_uc002dxs.2_In_Frame_Del_p.D57del	NM_006110	NP_006101	O95400	CD2B2_HUMAN	CD2 antigen (cytoplasmic tail) binding protein	57					assembly of spliceosomal tri-snRNP	cytoplasm|nucleoplasm|U5 snRNP	protein binding|ribonucleoprotein binding			ovary(1)	1						CTGGACCCCCCATCATCATCATC	0.532													8	1769	---	---	---	---					
CHD9	80205	broad.mit.edu	37	16	53358038	53358040	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:53358038_53358040delCAG	uc002ehb.2	+	38	8089_8091	c.7925_7927delCAG	c.(7924-7929)ACAGCA>ACA	p.A2648del	CHD9_uc002egy.2_In_Frame_Del_p.A2632del|CHD9_uc002ehc.2_In_Frame_Del_p.A2633del|CHD9_uc002ehf.2_In_Frame_Del_p.A1746del|CHD9_uc010cbw.2_In_Frame_Del_p.A714del	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2648	Poly-Ala.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				GCAAAGGCCACAGCAGCAGCAGC	0.512													7	855	---	---	---	---					
CCDC135	84229	broad.mit.edu	37	16	57731885	57731887	+	In_Frame_Del	DEL	GGA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:57731885_57731887delGGA	uc002emi.2	+	2	113_115	c.24_26delGGA	c.(22-27)GTGGAG>GTG	p.E13del	CCDC135_uc002emj.2_In_Frame_Del_p.E13del|CCDC135_uc002emk.2_In_Frame_Del_p.E13del	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	13	Potential.					cytoplasm				central_nervous_system(1)	1						Gggagaaggtggaggaggaggag	0.448													17	485	---	---	---	---					
CMTM1	113540	broad.mit.edu	37	16	66603929	66603930	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:66603929_66603930insT	uc002epi.3	+	2	295_296	c.172_173insT	c.(172-174)GTTfs	p.V58fs	CMTM1_uc002epb.3_RNA|CMTM1_uc002epc.3_RNA|CMTM1_uc002epd.3_Intron|CMTM1_uc002epe.3_Intron|CMTM1_uc002epf.3_Intron|CMTM1_uc002epg.3_Intron|CMTM1_uc002eph.3_Frame_Shift_Ins_p.V58fs|CMTM1_uc002epl.3_Intron|CMTM1_uc002epj.3_Intron|CMTM1_uc002epk.3_Intron|CMTM1_uc002epa.3_Intron|CMTM1_uc002epn.3_Frame_Shift_Ins_p.V175fs|CMTM1_uc002epo.3_RNA|CMTM1_uc002epp.3_RNA|CMTM1_uc002epq.3_RNA|CMTM1_uc010cds.2_RNA|CMTM1_uc002epr.3_Frame_Shift_Ins_p.V175fs|CMTM1_uc002epm.3_RNA|CMTM1_uc002eps.2_RNA	NM_181269	NP_851786	Q8IZ96	CKLF1_HUMAN	chemokine-like factor superfamily 1 isoform 1	58	MARVEL.|Helical; (Potential).				chemotaxis	extracellular space|integral to membrane	cytokine activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0702)|Epithelial(162;0.222)		CTGCATTGTCGTTTTTTTTATT	0.347													8	886	---	---	---	---					
RANBP10	57610	broad.mit.edu	37	16	67763279	67763281	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:67763279_67763281delGAG	uc002eud.2	-	10	1370_1372	c.1254_1256delCTC	c.(1252-1257)TCCTCG>TCG	p.418_419SS>S	RANBP10_uc010ceo.2_In_Frame_Del_p.189_190SS>S|RANBP10_uc010vju.1_In_Frame_Del_p.362_363SS>S|RANBP10_uc010vjv.1_In_Frame_Del_p.301_302SS>S|RANBP10_uc010vjw.1_In_Frame_Del_p.79_80SS>S	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	418_419	Ser-rich.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		ggaagaggacgaggaggaggagg	0.414													9	238	---	---	---	---					
NOB1	28987	broad.mit.edu	37	16	69782978	69782980	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:69782978_69782980delTCC	uc002exs.2	-	6	583_585	c.567_569delGGA	c.(565-570)GAGGAA>GAA	p.189_190EE>E		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	189_190	Poly-Glu.					nucleus	metal ion binding|protein binding				0						CCCGTTTTCTTCCTCCTCCTCCT	0.522													23	586	---	---	---	---					
ADAMTS18	170692	broad.mit.edu	37	16	77356311	77356311	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:77356311delA	uc002ffc.3	-	14	2504	c.2085delT	c.(2083-2085)TTTfs	p.F695fs	ADAMTS18_uc010chc.1_Frame_Shift_Del_p.F283fs|ADAMTS18_uc002ffe.1_Frame_Shift_Del_p.F391fs	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	695	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.A696fs*18(2)		large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CGGACATTGCAAAAAAAAATT	0.403													16	640	---	---	---	---					
C16orf46	123775	broad.mit.edu	37	16	81095682	81095682	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:81095682delT	uc002fgc.3	-	4	531	c.272delA	c.(271-273)AAGfs	p.K91fs	C16orf46_uc010chf.2_Frame_Shift_Del_p.K91fs|C16orf46_uc010vno.1_5'UTR	NM_152337	NP_689550	Q6P387	CP046_HUMAN	chromosome 16 open reading frame 46 isoform 2	91											0						TACCCTCGCCTTTTTTGGTAT	0.592													7	996	---	---	---	---					
TAF1C	9013	broad.mit.edu	37	16	84213650	84213651	+	Frame_Shift_Ins	INS	-	G	G			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr16:84213650_84213651insG	uc002fhn.2	-	13	1828_1829	c.1600_1601insC	c.(1600-1602)CAGfs	p.Q534fs	TAF1C_uc002fhm.2_Frame_Shift_Ins_p.Q440fs|TAF1C_uc010vnx.1_Frame_Shift_Ins_p.Q508fs|TAF1C_uc010vny.1_Frame_Shift_Ins_p.Q125fs|TAF1C_uc010vnz.1_Frame_Shift_Ins_p.Q202fs|TAF1C_uc002fho.2_Frame_Shift_Ins_p.Q57fs|TAF1C_uc010voa.1_Frame_Shift_Ins_p.Q202fs|TAF1C_uc002fhp.1_Intron	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	534					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						AGGAAGAGACTGGGGGGGGCCT	0.663													10	291	---	---	---	---					
C17orf85	55421	broad.mit.edu	37	17	3721809	3721811	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:3721809_3721811delTCC	uc010ckl.1	-	10	1079_1081	c.1056_1058delGGA	c.(1054-1059)GAGGAA>GAA	p.352_353EE>E	C17orf85_uc002fwr.2_In_Frame_Del_p.62_63EE>E|C17orf85_uc002fwq.2_In_Frame_Del_p.72_73EE>E	NM_001114118	NP_001107590	Q53F19	CQ085_HUMAN	ELG protein isoform a	352_353	Glu-rich.						nucleotide binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (3;0.0725)		ctcttcctcttcctcctcctcct	0.379													18	536	---	---	---	---					
FXR2	9513	broad.mit.edu	37	17	7495872	7495874	+	In_Frame_Del	DEL	CGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:7495872_7495874delCGG	uc002gia.1	-	15	2000_2002	c.1773_1775delCCG	c.(1771-1776)CGCCGT>CGT	p.591_592RR>R	MPDU1_uc010vuc.1_3'UTR|SOX15_uc002ghy.1_5'Flank|SOX15_uc002ghz.1_5'Flank	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	591_592	Poly-Arg.					cytosolic large ribosomal subunit	protein binding|RNA binding				0				READ - Rectum adenocarcinoma(115;0.17)		ACCACGGTTACGGCGGCGGCGGC	0.547													11	1543	---	---	---	---					
CHD3	1107	broad.mit.edu	37	17	7798765	7798765	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:7798765delC	uc002gje.2	+	10	1762	c.1612delC	c.(1612-1614)CCCfs	p.P538fs	CHD3_uc002gjd.2_Frame_Shift_Del_p.P597fs|CHD3_uc002gjf.2_Frame_Shift_Del_p.P538fs|CHD3_uc002gjg.1_Frame_Shift_Del_p.P366fs	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	538	Chromo 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				AGATGTCCCACCCCCCCGTCC	0.577													8	755	---	---	---	---					
CNTROB	116840	broad.mit.edu	37	17	7843518	7843519	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:7843518_7843519delGA	uc002gjq.2	+	10	2188_2189	c.1269_1270delGA	c.(1267-1272)CGGAGAfs	p.R423fs	CNTROB_uc002gjp.2_Frame_Shift_Del_p.R423fs|CNTROB_uc002gjr.2_Frame_Shift_Del_p.R325fs|CNTROB_uc010vum.1_Frame_Shift_Del_p.R135fs	NM_053051	NP_444279	Q8N137	CNTRB_HUMAN	centrobin, centrosomal BRCA2 interacting protein	423_424	Potential.|Required for centrosome localization.				centriole replication|centrosome separation|cytokinesis	centriole	protein domain specific binding			breast(1)|central_nervous_system(1)	2		Prostate(122;0.173)				ATACAGCTCGGAGAGAGAGAGA	0.579													9	687	---	---	---	---					
MYH10	4628	broad.mit.edu	37	17	8397095	8397097	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:8397095_8397097delCCT	uc002gll.2	-	30	4166_4168	c.4070_4072delAGG	c.(4069-4074)GAGGCC>GCC	p.E1357del	MYH10_uc002glm.2_In_Frame_Del_p.E1388del|MYH10_uc010cnx.2_In_Frame_Del_p.E1366del	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1357	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TTCTTCCTGGCCTCCTCCTCCTC	0.596													17	332	---	---	---	---					
SUPT6H	6830	broad.mit.edu	37	17	27001303	27001305	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:27001303_27001305delGAG	uc002hby.2	+	3	202_204	c.112_114delGAG	c.(112-114)GAGdel	p.E43del	SUPT6H_uc010crt.2_In_Frame_Del_p.E43del	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	43	Asp/Glu-rich.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					TCTTCCAGATGAGGAGGAGGAGG	0.453													14	309	---	---	---	---					
ACCN1	40	broad.mit.edu	37	17	31439005	31439005	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:31439005delC	uc002hhu.2	-	2	910	c.636delG	c.(634-636)GGGfs	p.G212fs	ACCN1_uc002hht.2_Frame_Shift_Del_p.G263fs	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	212	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CGTTGCCTGTCCCCCCCTTGA	0.552													7	579	---	---	---	---					
KLHL11	55175	broad.mit.edu	37	17	40011270	40011271	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:40011270_40011271delTC	uc002hyf.1	-	2	854_855	c.848_849delGA	c.(847-849)AGAfs	p.R283fs		NM_018143	NP_060613	Q9NVR0	KLH11_HUMAN	kelch-like 11 precursor	283	BACK.					extracellular region					0		Breast(137;0.00156)				CTTCAAAGTATCTCTCTCTCTC	0.401													13	348	---	---	---	---					
HOXB2	3212	broad.mit.edu	37	17	46622130	46622132	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:46622130_46622132delAGG	uc002inm.2	-	1	262_264	c.142_144delCCT	c.(142-144)CCTdel	p.P48del		NM_002145	NP_002136	P14652	HXB2_HUMAN	homeobox B2	48					blood circulation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TTTGCTCGAAAGGAGGAGGAGGA	0.542													15	590	---	---	---	---					
BPTF	2186	broad.mit.edu	37	17	65822267	65822269	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:65822267_65822269delGAG	uc002jgf.2	+	1	488_490	c.427_429delGAG	c.(427-429)GAGdel	p.E148del	BPTF_uc002jge.2_In_Frame_Del_p.E148del|BPTF_uc010wqm.1_In_Frame_Del_p.E148del	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	148	Glu-rich.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			catggtctccgaggaggaggagg	0.473													7	106	---	---	---	---					
BPTF	2186	broad.mit.edu	37	17	65940454	65940456	+	In_Frame_Del	DEL	CAC	-	-	rs143937013		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:65940454_65940456delCAC	uc002jgf.2	+	20	6727_6729	c.6666_6668delCAC	c.(6664-6669)AGCACC>AGC	p.T2227del	BPTF_uc002jge.2_In_Frame_Del_p.T2353del|BPTF_uc002jgg.2_In_Frame_Del_p.T27del	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	2353	Thr-rich.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CCACAGCCAGCACCACCACCACC	0.542													7	709	---	---	---	---					
LOC651250	651250	broad.mit.edu	37	17	66124428	66124428	+	RNA	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:66124428delA	uc002jgq.2	+	6		c.3551delA			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						TTCACCTGTCAAAAAAAAGAG	0.448													8	299	---	---	---	---					
CDC42EP4	23580	broad.mit.edu	37	17	71281585	71281587	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:71281585_71281587delTCC	uc002jjn.2	-	2	1200_1202	c.1053_1055delGGA	c.(1051-1056)GAGGAT>GAT	p.E351del	CDC42EP4_uc002jjo.2_In_Frame_Del_p.E351del|CDC42EP4_uc002jjp.1_In_Frame_Del_p.E281del	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	351					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			ACGGATTTCATCCTCCTCCTCCT	0.640													7	699	---	---	---	---					
SLC26A11	284129	broad.mit.edu	37	17	78201649	78201651	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr17:78201649_78201651delTGC	uc002jyb.1	+	7	895_897	c.626_628delTGC	c.(625-630)ATGCTG>ATG	p.L213del	SLC26A11_uc002jyc.1_In_Frame_Del_p.L213del|SLC26A11_uc002jyd.1_In_Frame_Del_p.L213del|SLC26A11_uc010dhv.1_In_Frame_Del_p.L213del	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	213	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CTGGTCTGCATGCTGCTGCTGCT	0.675													10	802	---	---	---	---					
OSBPL1A	114876	broad.mit.edu	37	18	21750331	21750331	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr18:21750331delT	uc002kve.2	-	24	2552	c.2378delA	c.(2377-2379)AATfs	p.N793fs	OSBPL1A_uc002kvd.2_Frame_Shift_Del_p.N280fs|OSBPL1A_uc010xbc.1_Frame_Shift_Del_p.N411fs	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	793					cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					TTTCTTATCATTTTTTTTGTA	0.393													14	658	---	---	---	---					
HAUS1	115106	broad.mit.edu	37	18	43685174	43685174	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr18:43685174delA	uc002lbu.2	+	2	125	c.45delA	c.(43-45)TTAfs	p.L15fs	ATP5A1_uc002lbt.1_5'Flank|HAUS1_uc002lbv.2_5'UTR	NM_138443	NP_612452	Q96CS2	HAUS1_HUMAN	coiled-coil domain containing 5	15					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole				ovary(1)	1						CTGCGTGGTTAAAAAAAATAT	0.393													15	229	---	---	---	---					
SERPINB12	89777	broad.mit.edu	37	18	61234240	61234241	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr18:61234240_61234241insT	uc010xen.1	+	7	1214_1215	c.1214_1215insT	c.(1213-1215)CCTfs	p.P405fs	SERPINB12_uc010xeo.1_Frame_Shift_Ins_p.P425fs	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	405					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						GTCTGCTCTCCTTAAAAGGGGA	0.411													9	393	---	---	---	---					
CNN2	1265	broad.mit.edu	37	19	1037646	1037646	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:1037646delC	uc002lqu.2	+	7	1040	c.677delC	c.(676-678)ACCfs	p.T226fs	ABCA7_uc002lqw.3_5'Flank|CNN2_uc002lqv.2_Frame_Shift_Del_p.T187fs|CNN2_uc010xgb.1_Frame_Shift_Del_p.T215fs|CNN2_uc010xgc.1_Frame_Shift_Del_p.T247fs|ABCA7_uc010dsa.2_5'Flank	NM_004368	NP_004359	Q99439	CNN2_HUMAN	calponin 2 isoform a	226	Calponin-like 2.				actomyosin structure organization|cellular response to mechanical stimulus|regulation of actin filament-based process	cell-cell junction|stress fiber	actin binding|calmodulin binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCCCGGGACCCGGCGGCAC	0.552													11	1034	---	---	---	---					
UBXN6	80700	broad.mit.edu	37	19	4454085	4454085	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:4454085delT	uc002man.1	-	2	185	c.89delA	c.(88-90)AAGfs	p.K30fs	UBXN6_uc010dty.1_5'UTR|UBXN6_uc002mam.1_5'UTR	NM_025241	NP_079517	Q9BZV1	UBXN6_HUMAN	UBX domain protein 6	30						microtubule organizing center|nucleus	protein binding				0						TTTGTGGGCCTTTTCCCTGGG	0.667													7	1024	---	---	---	---					
MLLT1	4298	broad.mit.edu	37	19	6222272	6222274	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:6222272_6222274delAGG	uc002mek.2	-	6	1132_1134	c.968_970delCCT	c.(967-972)TCCTTC>TTC	p.S323del		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	323	Poly-Ser.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						TTGTCCGAGAAGGAGGAGGAGGA	0.650			T	MLL	AL								7	313	---	---	---	---					
DENND1C	79958	broad.mit.edu	37	19	6477251	6477251	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:6477251delG	uc002mfe.2	-	8	583	c.491delC	c.(490-492)CCTfs	p.P164fs	DENND1C_uc002mfb.2_5'Flank|DENND1C_uc002mfc.2_5'Flank|DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Frame_Shift_Del_p.P120fs	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	164	DENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						CCCCCGGGTAGGGGGGGGGAT	0.672													8	250	---	---	---	---					
CYP4F3	4051	broad.mit.edu	37	19	15769322	15769322	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:15769322delT	uc002nbj.2	+	11	1321	c.1271delT	c.(1270-1272)GTTfs	p.V424fs	CYP4F3_uc010xok.1_Frame_Shift_Del_p.V424fs|CYP4F3_uc010xol.1_Frame_Shift_Del_p.V424fs|CYP4F3_uc010xom.1_Frame_Shift_Del_p.V275fs|CYP4F3_uc002nbk.2_Frame_Shift_Del_p.V424fs|CYP4F3_uc010xon.1_Frame_Shift_Del_p.V134fs	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	424					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						CTCATCAGTGTTTTTGGAACC	0.622													13	1723	---	---	---	---					
ZNF43	7594	broad.mit.edu	37	19	21992087	21992087	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:21992087delT	uc002nqj.2	-	4	882	c.752delA	c.(751-753)AATfs	p.N251fs	ZNF43_uc010ecv.2_Frame_Shift_Del_p.N245fs|ZNF43_uc002nql.2_Frame_Shift_Del_p.N245fs|ZNF43_uc002nqm.2_Frame_Shift_Del_p.N245fs|ZNF43_uc002nqk.2_Frame_Shift_Del_p.N181fs	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	251	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TCTAGTATAATTTTTTTTATG	0.348													7	453	---	---	---	---					
ATP4A	495	broad.mit.edu	37	19	36054349	36054351	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:36054349_36054351delCTT	uc002oal.1	-	2	120_122	c.91_93delAAG	c.(91-93)AAGdel	p.K31del		NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	31	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	CGCCACCCGCCTTCTTCTTCTTG	0.601													14	1849	---	---	---	---					
ZFP36	7538	broad.mit.edu	37	19	39898948	39898950	+	In_Frame_Del	DEL	CAC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:39898948_39898950delCAC	uc002olh.1	+	2	648_650	c.590_592delCAC	c.(589-594)TCACCA>TCA	p.P201del	ZFP36_uc010egn.1_In_Frame_Del_p.H73del	NM_003407	NP_003398	P26651	TTP_HUMAN	zinc finger protein 36, C3H type, homolog	201	P-P-P-P-G.				positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	cytosol|nucleus	AU-rich element binding|DNA binding|mRNA binding|protein binding|single-stranded RNA binding|zinc ion binding			pancreas(1)	1	all_cancers(60;6.54e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.53e-06)|Ovarian(47;0.0512)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CGCCGGACCTCACCACCACCACC	0.685													8	1466	---	---	---	---					
ZC3H4	23211	broad.mit.edu	37	19	47572401	47572403	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:47572401_47572403delCTC	uc002pga.3	-	14	2382_2384	c.2344_2346delGAG	c.(2344-2346)GAGdel	p.E782del	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	782	Potential.						nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		TCCTCGCTCTCTCCTCCTCCTCC	0.700													7	682	---	---	---	---					
NUCB1	4924	broad.mit.edu	37	19	49425109	49425111	+	In_Frame_Del	DEL	AGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:49425109_49425111delAGC	uc002plb.3	+	12	1271_1273	c.1199_1201delAGC	c.(1198-1203)AAGCAG>AAG	p.Q407del	NUCB1_uc002plc.2_In_Frame_Del_p.Q407del|NUCB1_uc002pld.2_In_Frame_Del_p.Q70del	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	407	Potential.|Poly-Gln.					ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		Gagcagcggaagcagcagcagca	0.522													7	271	---	---	---	---					
FUZ	80199	broad.mit.edu	37	19	50310483	50310485	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:50310483_50310485delCAG	uc002ppq.1	-	11	1285_1287	c.1180_1182delCTG	c.(1180-1182)CTGdel	p.L394del	FUZ_uc002ppr.1_In_Frame_Del_p.L294del|FUZ_uc002pps.1_RNA|FUZ_uc002ppt.1_RNA|FUZ_uc002ppu.1_In_Frame_Del_p.L358del|FUZ_uc002ppv.1_In_Frame_Del_p.L344del	NM_025129	NP_079405	Q9BT04	FUZZY_HUMAN	fuzzy homolog	394	Leu-rich.				cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		TCTGGGGAGACAGCAGCAGCAGC	0.635													8	325	---	---	---	---					
ZNF816A	125893	broad.mit.edu	37	19	53454261	53454262	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:53454261_53454262delTC	uc002qal.1	-	5	1067_1068	c.766_767delGA	c.(766-768)GAAfs	p.E256fs	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Frame_Shift_Del_p.E240fs	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	256					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		ACATTTATATTCTCTCTCTCTT	0.361													7	669	---	---	---	---					
LILRB1	10859	broad.mit.edu	37	19	55146148	55146150	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:55146148_55146150delCTC	uc002qgj.2	+	11	1757_1759	c.1417_1419delCTC	c.(1417-1419)CTCdel	p.L479del	LILRB1_uc010erp.1_In_Frame_Del_p.L94del|LILRB1_uc002qgl.2_In_Frame_Del_p.L479del|LILRB1_uc002qgk.2_In_Frame_Del_p.L480del|LILRB1_uc002qgm.2_In_Frame_Del_p.L480del|LILRB1_uc010erq.2_In_Frame_Del_p.L463del|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	479	Helical; (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity	p.L479del(1)		large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CAtcctactgctcctcctcctcc	0.458										HNSCC(37;0.09)			15	274	---	---	---	---					
ZNF416	55659	broad.mit.edu	37	19	58084554	58084554	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr19:58084554delT	uc002qpf.2	-	4	889	c.718delA	c.(718-720)AGGfs	p.R240fs	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	240					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		TCATAAAGCCTTTTTCCAGTG	0.473													8	1117	---	---	---	---					
MYCN	4613	broad.mit.edu	37	2	16086094	16086094	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:16086094delA	uc002rci.2	+	3	1570	c.1270delA	c.(1270-1272)AAAfs	p.K424fs	MYCN_uc010yjr.1_Frame_Shift_Del_p.K416fs	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	424	Helix-loop-helix motif.				regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			GGTCATTTTGAAAAAGGCCAC	0.547			A		neuroblastoma								7	1022	---	---	---	---					
SMC6	79677	broad.mit.edu	37	2	17898126	17898126	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:17898126delT	uc002rco.2	-	14	1524	c.1228delA	c.(1228-1230)ATAfs	p.I410fs	SMC6_uc010exo.2_Frame_Shift_Del_p.I410fs|SMC6_uc002rcn.2_Frame_Shift_Del_p.I410fs|SMC6_uc002rcp.1_Frame_Shift_Del_p.I436fs|SMC6_uc002rcq.2_Frame_Shift_Del_p.I436fs|SMC6_uc002rcr.1_Frame_Shift_Del_p.I410fs	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	410	Potential.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					AACCAAGATATTTTTTTTTGT	0.343													9	251	---	---	---	---					
DHX57	90957	broad.mit.edu	37	2	39095411	39095413	+	In_Frame_Del	DEL	CCA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:39095411_39095413delCCA	uc002rrf.2	-	2	234_236	c.135_137delTGG	c.(133-138)GGTGGA>GGA	p.45_46GG>G	DHX57_uc002rre.2_5'Flank|DHX57_uc002rrg.2_In_Frame_Del_p.45_46GG>G	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	45_46	Gly-rich.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				Gccgccacctccaccaccaccac	0.384													12	401	---	---	---	---					
USP34	9736	broad.mit.edu	37	2	61575023	61575025	+	In_Frame_Del	DEL	TGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:61575023_61575025delTGG	uc002sbe.2	-	15	2287_2289	c.2265_2267delCCA	c.(2263-2268)CACCAT>CAT	p.755_756HH>H		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	755_756					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			gtggtggtgatggtggtggtggt	0.281													13	430	---	---	---	---					
ATP6V1B1	525	broad.mit.edu	37	2	71191572	71191573	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:71191572_71191573insC	uc002shj.2	+	12	1235_1236	c.1148_1149insC	c.(1147-1149)TACfs	p.Y383fs	ATP6V1B1_uc010fdv.2_Frame_Shift_Ins_p.Y366fs|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Frame_Shift_Ins_p.Y341fs	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	383					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						CCTCAGATCTACCCCCCCATCA	0.545											OREG0014686	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	569	---	---	---	---					
RAB11FIP5	26056	broad.mit.edu	37	2	73315337	73315339	+	In_Frame_Del	DEL	TGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:73315337_73315339delTGG	uc002siu.3	-	3	1648_1650	c.1407_1409delCCA	c.(1405-1410)CACCAA>CAA	p.H469del	RAB11FIP5_uc002sit.3_In_Frame_Del_p.H391del	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	469					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						ACTTAGGCCTTGGTGGTGGTGGT	0.635													7	939	---	---	---	---					
SLC4A5	57835	broad.mit.edu	37	2	74451994	74451994	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:74451994delT	uc002sko.1	-	24	3269	c.3267delA	c.(3265-3267)AAAfs	p.K1089fs	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Frame_Shift_Del_p.K1073fs|SLC4A5_uc010ffc.1_Frame_Shift_Del_p.K992fs|SLC4A5_uc002skp.1_Frame_Shift_Del_p.K971fs|SLC4A5_uc002sks.1_Frame_Shift_Del_p.K981fs	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	1089	Extracellular (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						CGTGGGCCCCTTTTTTTCTCT	0.517													9	958	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	90458648	90458648	+	RNA	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:90458648delT	uc010fhm.2	+	31		c.4267delT								Parts of antibodies, mostly variable regions.																		CTTATTACTGTCAACAGAGTG	0.512													11	4143	---	---	---	---					
ZNF514	84874	broad.mit.edu	37	2	95815034	95815035	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:95815034_95815035insT	uc002sue.1	-	5	1569_1570	c.1195_1196insA	c.(1195-1197)ACCfs	p.T399fs	ZNF514_uc002sud.1_Frame_Shift_Ins_p.T472fs	NM_032788	NP_116177	Q96K75	ZN514_HUMAN	zinc finger protein 514	399					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATTTATAGGGTTTTTTTTCCA	0.396													9	866	---	---	---	---					
TMEM131	23505	broad.mit.edu	37	2	98427639	98427639	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:98427639delT	uc002syh.3	-	18	2149	c.1920delA	c.(1918-1920)AAAfs	p.K640fs		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	640						integral to membrane				ovary(4)|central_nervous_system(2)	6						TCCCCTCTAATTTTTTTGCAG	0.393													12	1670	---	---	---	---					
REV1	51455	broad.mit.edu	37	2	100055102	100055102	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:100055102delT	uc002tad.2	-	6	1386	c.1174delA	c.(1174-1176)ATGfs	p.M392fs	REV1_uc002tac.2_Frame_Shift_Del_p.M392fs|REV1_uc002tae.1_Frame_Shift_Del_p.M371fs	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	392					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						CCTGTTTTCATTTTTTTTAAC	0.348								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					11	758	---	---	---	---					
NPHP1	4867	broad.mit.edu	37	2	110922711	110922713	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:110922711_110922713delCTT	uc002tfn.3	-	7	738_740	c.644_646delAAG	c.(643-648)GAAGGC>GGC	p.E215del	NPHP1_uc002tfm.3_In_Frame_Del_p.E215del|NPHP1_uc002tfl.3_In_Frame_Del_p.E215del|NPHP1_uc002tfo.3_In_Frame_Del_p.E153del|NPHP1_uc010ywx.1_In_Frame_Del_p.E215del|NPHP1_uc010fjv.1_In_Frame_Del_p.E215del	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	215	Glu-rich.				actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						GACTCTTGGCCTTCTTCTTCTTC	0.404													7	890	---	---	---	---					
RGPD5	84220	broad.mit.edu	37	2	113181886	113181887	+	Splice_Site	INS	-	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:113181886_113181887insA	uc002ths.1	-	2	150	c.73_splice	c.e2-1	p.K25_splice	RGPD8_uc010fkk.1_Splice_Site|RGPD5_uc002tht.1_5'Flank|RGPD5_uc010yxm.1_Splice_Site_p.K25_splice	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform						intracellular transport	cytoplasm	binding				0						CATTGACTTCTAAAAAAAAATT	0.252													8	329	---	---	---	---					
SLC20A1	6574	broad.mit.edu	37	2	113416607	113416608	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:113416607_113416608delAG	uc002tib.2	+	7	1430_1431	c.984_985delAG	c.(982-987)CCAGAGfs	p.P328fs	SLC20A1_uc002tic.1_Frame_Shift_Del_p.P140fs	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	328_329	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						AGGAAGCTCCAGAGAGAGAGAG	0.515													10	434	---	---	---	---					
ERMN	57471	broad.mit.edu	37	2	158178062	158178064	+	In_Frame_Del	DEL	ATC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:158178062_158178064delATC	uc002tzh.2	-	3	836_838	c.574_576delGAT	c.(574-576)GATdel	p.D192del	ERMN_uc010zcj.1_In_Frame_Del_p.D86del|ERMN_uc010zck.1_In_Frame_Del_p.D172del|ERMN_uc002tzi.2_In_Frame_Del_p.D205del	NM_020711	NP_065762	Q8TAM6	ERMIN_HUMAN	ermin, ERM-like protein isoform b	192	Poly-Asp.					cytoplasm|cytoskeleton				ovary(1)|skin(1)	2						tattgcaattatcatcatcatca	0.305													7	612	---	---	---	---					
SSB	6741	broad.mit.edu	37	2	170665008	170665008	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:170665008delA	uc002ufk.2	+	7	678	c.571delA	c.(571-573)AAAfs	p.K191fs	SSB_uc002ufl.2_Frame_Shift_Del_p.K191fs|SSB_uc002ufm.2_Frame_Shift_Del_p.K191fs	NM_003142	NP_003133	P05455	LA_HUMAN	autoantigen La	191					histone mRNA metabolic process|tRNA modification	nucleus|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding|tRNA binding			skin(3)|pancreas(1)	4						TTACTTTGCCAAAAAAAATGA	0.323													7	479	---	---	---	---					
MYO3B	140469	broad.mit.edu	37	2	171240258	171240259	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:171240258_171240259insC	uc002ufy.2	+	12	1367_1368	c.1224_1225insC	c.(1222-1227)AATCCCfs	p.N408fs	MYO3B_uc002ufv.2_Frame_Shift_Ins_p.N395fs|MYO3B_uc010fqb.1_Frame_Shift_Ins_p.N395fs|MYO3B_uc002ufz.2_Frame_Shift_Ins_p.N408fs|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	408_409	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCGCCTCCAATCCCCCCCACAT	0.465													8	571	---	---	---	---					
CYP20A1	57404	broad.mit.edu	37	2	204150380	204150380	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:204150380delA	uc002uzv.3	+	9	1518	c.896delA	c.(895-897)CAAfs	p.Q299fs	CYP20A1_uc002uzx.3_Frame_Shift_Del_p.Q197fs|CYP20A1_uc010zif.1_Frame_Shift_Del_p.Q307fs|CYP20A1_uc002uzy.3_Frame_Shift_Del_p.Q197fs|CYP20A1_uc002uzw.3_RNA|CYP20A1_uc010ftw.2_Frame_Shift_Del_p.Q29fs	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,	299						integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						GAAGAAGTTCAAAAAAAATTA	0.348													7	569	---	---	---	---					
ZDBF2	57683	broad.mit.edu	37	2	207174869	207174869	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:207174869delA	uc002vbp.2	+	5	5867	c.5617delA	c.(5617-5619)AAAfs	p.K1873fs		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1873							nucleic acid binding|zinc ion binding			ovary(3)	3						TTCGAAGGGGAAAAAAAAGGT	0.413													7	204	---	---	---	---					
C2orf67	151050	broad.mit.edu	37	2	210887680	210887680	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:210887680delT	uc002vds.2	-	15	3165	c.2957delA	c.(2956-2958)AATfs	p.N986fs	C2orf67_uc002vdt.2_Frame_Shift_Del_p.N944fs	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	986										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		CTGTCACCTATTTTTTTTAAC	0.418													8	199	---	---	---	---					
COL4A4	1286	broad.mit.edu	37	2	227979396	227979396	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:227979396delT	uc010zlt.1	-	8	1160	c.506delA	c.(505-507)AAGfs	p.K169fs		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	169	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TTTTTCTCCCTTTTCCCCAGG	0.299													7	833	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233620985	233620987	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr2:233620985_233620987delGAG	uc002vti.3	+	8	657_659	c.320_322delGAG	c.(319-324)CGAGGA>CGA	p.G111del	GIGYF2_uc010zmj.1_In_Frame_Del_p.G111del|GIGYF2_uc002vtg.2_In_Frame_Del_p.G111del|GIGYF2_uc002vtj.3_In_Frame_Del_p.G111del|GIGYF2_uc002vtk.3_In_Frame_Del_p.G111del|GIGYF2_uc002vth.3_In_Frame_Del_p.G111del|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	111	Poly-Gly.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		TTGACAGGACGAGGAGGAGGAGG	0.394													11	493	---	---	---	---					
RASSF2	9770	broad.mit.edu	37	20	4776492	4776494	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:4776492_4776494delAGG	uc002wld.2	-	4	308_310	c.254_256delCCT	c.(253-258)TCCTGG>TGG	p.S85del	RASSF2_uc002wlc.2_5'Flank|RASSF2_uc002wle.2_RNA|RASSF2_uc002wlf.2_In_Frame_Del_p.S85del	NM_170774	NP_739580	P50749	RASF2_HUMAN	Ras association domain family 2	85					cell cycle|signal transduction	nucleus	protein binding			ovary(3)|lung(2)|large_intestine(1)	6						CCAGAGTGCCAGGAGGAGGAGGA	0.611													9	728	---	---	---	---					
CHGB	1114	broad.mit.edu	37	20	5903283	5903285	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:5903283_5903285delGAG	uc002wmg.2	+	4	799_801	c.493_495delGAG	c.(493-495)GAGdel	p.E169del	CHGB_uc010zqz.1_Translation_Start_Site	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	169	Poly-Glu.					extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GAGAGAGGATGAGGAGGAGGAGG	0.532													9	257	---	---	---	---					
GINS1	9837	broad.mit.edu	37	20	25422397	25422397	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:25422397delA	uc002wuv.1	+	6	641	c.507delA	c.(505-507)TTAfs	p.L169fs	GINS1_uc010zte.1_RNA	NM_021067	NP_066545	Q14691	PSF1_HUMAN	GINS complex subunit 1	169					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	cytoplasm|nucleoplasm				ovary(1)|central_nervous_system(1)	2						CAGTCCTATTAAAAAAAAATA	0.299													19	586	---	---	---	---					
KIF3B	9371	broad.mit.edu	37	20	30898763	30898765	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:30898763_30898765delGAG	uc002wxq.2	+	2	1350_1352	c.1183_1185delGAG	c.(1183-1185)GAGdel	p.E399del	KIF3B_uc010ztv.1_Intron|KIF3B_uc010ztw.1_Intron	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	399	Poly-Glu.|Potential.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGGTGGggaagaggaggaggagg	0.433													8	251	---	---	---	---					
NCOA6	23054	broad.mit.edu	37	20	33330968	33330970	+	In_Frame_Del	DEL	TGC	-	-	rs112895426	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:33330968_33330970delTGC	uc002xav.2	-	12	5661_5663	c.3090_3092delGCA	c.(3088-3093)CAGCAA>CAA	p.1030_1031QQ>Q	NCOA6_uc002xaw.2_In_Frame_Del_p.1030_1031QQ>Q	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1030_1031	NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CATCATTtgttgctgctgctgct	0.498													10	635	---	---	---	---					
CHD6	84181	broad.mit.edu	37	20	40033403	40033405	+	In_Frame_Del	DEL	TCT	-	-	rs146425509		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:40033403_40033405delTCT	uc002xka.1	-	37	8154_8156	c.7976_7978delAGA	c.(7975-7980)AAGACA>ACA	p.K2659del	CHD6_uc002xjz.1_In_Frame_Del_p.K196del	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2659	Poly-Lys.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TCCCCCTTTGTCTTCTTCTTCTT	0.586													11	687	---	---	---	---					
SALL4	57167	broad.mit.edu	37	20	50408346	50408348	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:50408346_50408348delGCT	uc002xwh.3	-	2	775_777	c.674_676delAGC	c.(673-678)CAGCTA>CTA	p.Q225del	SALL4_uc010gii.2_In_Frame_Del_p.Q225del|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	225					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATCTGCTGTAGCTGCTGCTGCTG	0.645													8	536	---	---	---	---					
SYCP2	10388	broad.mit.edu	37	20	58467047	58467047	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:58467047delT	uc002yaz.2	-	23	2501	c.2362delA	c.(2362-2364)ATGfs	p.M788fs		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	788					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			AAGCTCACCATTTTTTTTTGT	0.323													8	280	---	---	---	---					
SYCP2	10388	broad.mit.edu	37	20	58490593	58490593	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:58490593delT	uc002yaz.2	-	8	665	c.526delA	c.(526-528)ATGfs	p.M176fs	SYCP2_uc010gju.1_Frame_Shift_Del_p.M77fs	NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	176					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			ATAGCATTCATTTTTTTTATA	0.289													8	733	---	---	---	---					
RTEL1	51750	broad.mit.edu	37	20	62292822	62292824	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr20:62292822_62292824delGCT	uc002yfu.1	+	3	617_619	c.274_276delGCT	c.(274-276)GCTdel	p.A96del	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_In_Frame_Del_p.A96del|RTEL1_uc011abd.1_In_Frame_Del_p.A96del|RTEL1_uc002yfv.2_In_Frame_Del_p.A96del|RTEL1_uc011abe.1_5'UTR|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	96	Helicase ATP-binding.				DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			CTGGGGCAACGCTGCTGCTGCTG	0.645													8	204	---	---	---	---					
TCP10L	140290	broad.mit.edu	37	21	33949091	33949091	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:33949091delC	uc002ypw.3	-	5	757	c.641delG	c.(640-642)GGTfs	p.G214fs		NM_144659	NP_653260	Q9NV44	CU077_HUMAN	T-complex 10A-2	Error:Variant_position_missing_in_Q9NV44_after_alignment											0						TCTTCAGACACCCCCCCGTCT	0.478													8	684	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551313	42551313	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:42551313delC	uc002yyz.2	-	1	5854	c.243delG	c.(241-243)TGGfs	p.W81fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	81											0		Prostate(19;2.29e-06)				gtgagggtatccagggtgagt	0.159													8	94	---	---	---	---					
ZNF295	49854	broad.mit.edu	37	21	43412316	43412317	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:43412316_43412317delTC	uc002zab.3	-	3	2102_2103	c.1888_1889delGA	c.(1888-1890)GAAfs	p.E630fs	ZNF295_uc002yzz.3_Intron|ZNF295_uc002yzy.3_Frame_Shift_Del_p.E630fs|ZNF295_uc002zaa.3_Frame_Shift_Del_p.E630fs	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	630					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTTCTTAATTTCTCTCTCTCTC	0.455													9	457	---	---	---	---					
PTTG1IP	754	broad.mit.edu	37	21	46276194	46276196	+	In_Frame_Del	DEL	GCA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr21:46276194_46276196delGCA	uc002zgb.1	-	4	571_573	c.361_363delTGC	c.(361-363)TGCdel	p.C121del	PTTG1IP_uc011afj.1_RNA|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330	P53801	PTTG_HUMAN	pituitary tumor-transforming gene 1	121	Poly-Cys.|Cytoplasmic (Potential).				protein import into nucleus	cytoplasm|integral to membrane|nucleus				ovary(1)	1				Colorectal(79;0.0659)		TCTTCCTCCTGCAGCAGCAGCAG	0.616													19	416	---	---	---	---					
HIRA	7290	broad.mit.edu	37	22	19373136	19373138	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:19373136_19373138delGCT	uc002zpf.1	-	12	1455_1457	c.1235_1237delAGC	c.(1234-1239)CAGCTG>CTG	p.Q412del	HIRA_uc011agx.1_In_Frame_Del_p.Q278del|HIRA_uc010grn.1_In_Frame_Del_p.Q412del|HIRA_uc010gro.1_In_Frame_Del_p.Q368del|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	412	Poly-Gln.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					TTCTGGTCCAGCTGCTGCTGCTG	0.581													8	350	---	---	---	---					
SF3A1	10291	broad.mit.edu	37	22	30742328	30742330	+	In_Frame_Del	DEL	CTG	-	-	rs141985009	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:30742328_30742330delCTG	uc003ahl.2	-	3	496_498	c.364_366delCAG	c.(364-366)CAGdel	p.Q122del		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	122	Poly-Gln.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						GCTGGGTGGTCTGCTGCTGCTGC	0.596													26	718	---	---	---	---					
MYH9	4627	broad.mit.edu	37	22	36696948	36696950	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:36696948_36696950delCTC	uc003apg.2	-	22	3016_3018	c.2785_2787delGAG	c.(2785-2787)GAGdel	p.E929del	MYH9_uc003aph.1_In_Frame_Del_p.E793del	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	929	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GCTGGCAGCGCTCCTCCTCCTCC	0.665			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				16	818	---	---	---	---					
C22orf32	91689	broad.mit.edu	37	22	42478046	42478048	+	In_Frame_Del	DEL	GAT	-	-	rs141840500		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:42478046_42478048delGAT	uc003bca.2	+	2	378_380	c.304_306delGAT	c.(304-306)GATdel	p.D107del		NM_033318	NP_201575	Q9H4I9	CV032_HUMAN	hypothetical protein LOC91689 precursor	107	Asp/Glu-rich.					integral to membrane|mitochondrion				ovary(1)	1						TGTTCCAGAGGATGATGATGATG	0.478													10	678	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610573	42610575	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:42610573_42610575delAGG	uc003bcj.1	-	1	871_873	c.737_739delCCT	c.(736-741)TCCTTC>TTC	p.S246del	TCF20_uc003bck.1_In_Frame_Del_p.S246del|TCF20_uc003bnt.2_In_Frame_Del_p.S246del	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	246	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GGTGAAGGGAaggaggaggagga	0.438													17	531	---	---	---	---					
ARFGAP3	26286	broad.mit.edu	37	22	43213780	43213780	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:43213780delT	uc003bdd.2	-	10	1116	c.896delA	c.(895-897)AATfs	p.N299fs	ARFGAP3_uc010gzf.2_Frame_Shift_Del_p.N255fs|ARFGAP3_uc011apu.1_Frame_Shift_Del_p.N227fs	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	299					intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						TGAGTCAACATTTTTTTTGCC	0.224													18	1198	---	---	---	---					
SCUBE1	80274	broad.mit.edu	37	22	43619184	43619184	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr22:43619184delG	uc003bdt.1	-	11	1334	c.1246delC	c.(1246-1248)CGGfs	p.R416fs		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	416					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				AGCTGGGCCCGGGGGGAGGTC	0.647													7	1050	---	---	---	---					
SGOL1	151648	broad.mit.edu	37	3	20216050	20216050	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:20216050delT	uc003cbs.2	-	6	1160	c.973delA	c.(973-975)ATGfs	p.M325fs	SGOL1_uc003cbr.2_Intron|SGOL1_uc010hfa.2_Intron|SGOL1_uc003cbt.2_Intron|SGOL1_uc003cbu.2_Frame_Shift_Del_p.M325fs|SGOL1_uc003cbv.2_Intron|SGOL1_uc003cbw.2_Intron|SGOL1_uc003cbx.2_Intron|SGOL1_uc003cby.2_Intron|SGOL1_uc003cbz.2_Frame_Shift_Del_p.M325fs|SGOL1_uc003cca.2_Frame_Shift_Del_p.M325fs|SGOL1_uc003ccb.2_Intron|SGOL1_uc003ccc.2_Intron	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	325					attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						GATTTGTGCATTTTTTTTTGG	0.214													7	239	---	---	---	---					
CLASP2	23122	broad.mit.edu	37	3	33602361	33602361	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:33602361delT	uc003cfu.2	-	27	3223	c.2869delA	c.(2869-2871)ATGfs	p.M957fs	CLASP2_uc003cfs.2_Frame_Shift_Del_p.M164fs|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Frame_Shift_Del_p.M557fs	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	966										ovary(3)|central_nervous_system(1)	4						TCAGCACCCATTTTTTTTAGT	0.343													18	859	---	---	---	---					
PDCD6IP	10015	broad.mit.edu	37	3	33866811	33866811	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:33866811delT	uc003cfx.2	+	5	750	c.595delT	c.(595-597)TTTfs	p.F199fs	PDCD6IP_uc011axv.1_Frame_Shift_Del_p.F199fs|PDCD6IP_uc003cfy.2_Frame_Shift_Del_p.F199fs	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	programmed cell death 6 interacting protein	199	Interaction with EIAV p9.|Interaction with CHMP4A, CHMP4B and CHMP4C.|BRO1.			F->D: Abolishes interaction with CHMP4B and abolishes rescue of PTAP-type L domain-deficient HIV-1 p6.	apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			ovary(1)|skin(1)	2						TCAAGAAGTATTTTTTTTAAA	0.368													7	578	---	---	---	---					
NKTR	4820	broad.mit.edu	37	3	42680269	42680271	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:42680269_42680271delGAG	uc003clo.2	+	13	3220_3222	c.3073_3075delGAG	c.(3073-3075)GAGdel	p.E1029del	NKTR_uc003clm.1_In_Frame_Del_p.E776del|NKTR_uc003clp.2_In_Frame_Del_p.E776del|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_In_Frame_Del_p.E919del|NKTR_uc003clr.1_In_Frame_Del_p.E776del|NKTR_uc003cls.2_In_Frame_Del_p.E729del	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	1029					protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		ATTTGGTGAAGAGGAGGAGGAGG	0.355													7	553	---	---	---	---					
CCR3	1232	broad.mit.edu	37	3	46306948	46306948	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:46306948delT	uc003cpg.1	+	4	842	c.299delT	c.(298-300)GTTfs	p.V100fs	CCR3_uc003cpi.1_Frame_Shift_Del_p.V100fs|CCR3_uc003cpj.1_Frame_Shift_Del_p.V100fs|CCR3_uc003cpk.1_Frame_Shift_Del_p.V121fs|CCR3_uc010hjb.1_Frame_Shift_Del_p.V118fs|CCR3_uc003cpl.1_Frame_Shift_Del_p.V133fs	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	100	Extracellular (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CATAACTGGGTTTTTGGCCAT	0.488													8	1572	---	---	---	---					
CCR3	1232	broad.mit.edu	37	3	46307343	46307343	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:46307343delA	uc003cpg.1	+	4	1237	c.694delA	c.(694-696)AAAfs	p.K232fs	CCR3_uc003cpi.1_Frame_Shift_Del_p.K232fs|CCR3_uc003cpj.1_Frame_Shift_Del_p.K232fs|CCR3_uc003cpk.1_Frame_Shift_Del_p.K253fs|CCR3_uc010hjb.1_Frame_Shift_Del_p.K250fs|CCR3_uc003cpl.1_Frame_Shift_Del_p.K265fs	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	232	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		GTGCCCCAGTAAAAAAAAGTA	0.468													8	292	---	---	---	---					
SETD2	29072	broad.mit.edu	37	3	47103755	47103756	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:47103755_47103756delTC	uc003cqs.2	-	14	6243_6244	c.6190_6191delGA	c.(6190-6192)GACfs	p.D2064fs	SETD2_uc003cqv.2_Frame_Shift_Del_p.D2131fs|SETD2_uc003cqt.1_RNA	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	2064					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		CTTGTCTGGGTCTCTCTCTCTT	0.485			N|F|S|Mis		clear cell renal carcinoma								7	1666	---	---	---	---					
USP4	7375	broad.mit.edu	37	3	49321969	49321971	+	In_Frame_Del	DEL	TCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:49321969_49321971delTCT	uc003cwq.2	-	18	2397_2399	c.2318_2320delAGA	c.(2317-2322)AAGACC>ACC	p.K773del	USP4_uc003cwo.2_In_Frame_Del_p.K485del|USP4_uc003cwp.2_In_Frame_Del_p.K503del|USP4_uc003cwr.2_In_Frame_Del_p.K726del	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	773					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		GCCACTGTGGTCTTCTTCTTCTT	0.532													10	642	---	---	---	---					
TCTA	6988	broad.mit.edu	37	3	49449979	49449981	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:49449979_49449981delGCT	uc003cwv.3	+	1	341_343	c.120_122delGCT	c.(118-123)AAGCTG>AAG	p.L44del	RHOA_uc010hku.2_5'Flank|RHOA_uc003cwu.2_5'Flank	NM_022171	NP_071503	P57738	TCTA_HUMAN	T-cell leukemia translocation altered	44	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CCCTCTTCAAGCTGCTGCTGCTG	0.645													7	922	---	---	---	---					
DAG1	1605	broad.mit.edu	37	3	49569266	49569268	+	In_Frame_Del	DEL	CCA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:49569266_49569268delCCA	uc003cxc.3	+	3	1740_1742	c.1322_1324delCCA	c.(1321-1326)TCCACC>TCC	p.T446del		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	446	Thr-rich.|Mucin-like domain.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		TCAACTGACTCCACCACCACCAC	0.581													7	498	---	---	---	---					
TWF2	11344	broad.mit.edu	37	3	52265509	52265509	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:52265509delT	uc003ddd.2	-	4	480	c.329delA	c.(328-330)AAGfs	p.K110fs	TLR9_uc003ddb.2_5'Flank|TLR9_uc003ddc.1_5'Flank|TWF2_uc010hmc.2_Frame_Shift_Del_p.K110fs	NM_007284	NP_009215	Q6IBS0	TWF2_HUMAN	twinfilin-like protein	110	ADF-H 1.			K -> R (in Ref. 4; CAG33013).		cytoskeleton|perinuclear region of cytoplasm	actin binding|ATP binding			stomach(1)|ovary(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;2.43e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TCCAAACTCCTTTTTCACTGT	0.602											OREG0015610	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	1159	---	---	---	---					
PDE12	201626	broad.mit.edu	37	3	57542768	57542770	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:57542768_57542770delCTT	uc003diw.3	+	1	788_790	c.662_664delCTT	c.(661-666)CCTTCT>CCT	p.S224del	PDE12_uc003div.2_In_Frame_Del_p.S224del	NM_177966	NP_808881	Q6L8Q7	PDE12_HUMAN	phosphodiesterase 12	224							hydrolase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.011)|Kidney(284;0.0127)		CCCTCCTCACCTTCTTCTTCTTG	0.616													8	1034	---	---	---	---					
LRIG1	26018	broad.mit.edu	37	3	66436625	66436627	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:66436625_66436627delGCT	uc003dmx.2	-	13	1581_1583	c.1567_1569delAGC	c.(1567-1569)AGCdel	p.S524del	SLC25A26_uc011bft.1_RNA|LRIG1_uc011bfu.1_In_Frame_Del_p.S144del|LRIG1_uc003dmw.2_In_Frame_Del_p.S190del|LRIG1_uc010hnz.2_In_Frame_Del_p.S240del|LRIG1_uc010hoa.2_In_Frame_Del_p.S548del	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	524	Extracellular (Potential).|Ig-like C2-type 1.|Poly-Ser.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		TCATGGGGGAGCTGCTGCTGCTG	0.547													8	1728	---	---	---	---					
VGLL3	389136	broad.mit.edu	37	3	87027857	87027859	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:87027857_87027859delCTC	uc003dqn.2	-	2	584_586	c.220_222delGAG	c.(220-222)GAGdel	p.E74del		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	74					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GCTGGtctttctcctcctcctcc	0.394													19	226	---	---	---	---					
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:100148586_100148588delGAT	uc003dtx.3	+	2	1293_1295	c.13_15delGAT	c.(13-15)GATdel	p.D10del	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	10	Poly-Asp.										0						GGAGCACAAAGATGATGATGATG	0.507													19	1463	---	---	---	---					
DPPA4	55211	broad.mit.edu	37	3	109049606	109049606	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:109049606delT	uc003dxq.3	-	5	499	c.444delA	c.(442-444)AAAfs	p.K148fs	DPPA4_uc011bho.1_Intron|DPPA4_uc011bhp.1_Frame_Shift_Del_p.K148fs	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	148						nucleus	protein binding			upper_aerodigestive_tract(1)	1						CCACCTTTAATTTTTTTTGCA	0.413													8	664	---	---	---	---					
MIR567	693152	broad.mit.edu	37	3	111831724	111831724	+	RNA	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:111831724delA	hsa-mir-567|MI0003573	+			c.77delA			C3orf52_uc003dyq.3_Intron|C3orf52_uc011bhs.1_Intron|C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron																	0						ATGCAAAACTAAAAAAAAAAA	0.323													8	45	---	---	---	---					
CP	1356	broad.mit.edu	37	3	148903053	148903053	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:148903053delT	uc003ewy.3	-	12	2511	c.2258delA	c.(2257-2259)AAGfs	p.K753fs	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Frame_Shift_Del_p.K534fs|CP_uc003ewz.2_Frame_Shift_Del_p.K753fs	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	753	Plastocyanin-like 5.|F5/8 type A 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	ATGCAGCTCCTTTTCCCACTC	0.443													7	1753	---	---	---	---					
ATP13A3	79572	broad.mit.edu	37	3	194181471	194181473	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr3:194181471_194181473delGAG	uc003fty.3	-	3	541_543	c.139_141delCTC	c.(139-141)CTCdel	p.L47del		NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	47	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		GCATCCAATAGAGGAGGAGGAGG	0.463													7	738	---	---	---	---					
PDE6B	5158	broad.mit.edu	37	4	661763	661765	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:661763_661765delAGG	uc003gap.2	+	21	2524_2526	c.2471_2473delAGG	c.(2470-2475)AAGGAG>AAG	p.E828del	PDE6B_uc003gao.3_In_Frame_Del_p.E828del|PDE6B_uc011buy.1_In_Frame_Del_p.E549del|PDE6B_uc011buz.1_In_Frame_Del_p.E260del	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	828					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CTGGAGGAGAAGGAGGAGGAGGA	0.562													15	728	---	---	---	---					
RGS12	6002	broad.mit.edu	37	4	3430398	3430399	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:3430398_3430399insA	uc003ggw.2	+	16	4429_4430	c.3525_3526insA	c.(3523-3528)GGGAAAfs	p.G1175fs	RGS12_uc003ggv.2_Frame_Shift_Ins_p.G1175fs|RGS12_uc003ggy.1_Intron|RGS12_uc003ggz.2_Frame_Shift_Ins_p.G527fs|RGS12_uc011bvs.1_Intron|RGS12_uc003gha.2_Frame_Shift_Ins_p.G517fs|RGS12_uc010icv.2_Frame_Shift_Ins_p.G374fs	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	1175_1176						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CAAAGATTGGGAAAAAAAAATA	0.332													13	435	---	---	---	---					
LYAR	55646	broad.mit.edu	37	4	4276167	4276169	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:4276167_4276169delCTT	uc011bvy.1	-	7	900_902	c.757_759delAAG	c.(757-759)AAGdel	p.K253del	LYAR_uc011bvx.1_In_Frame_Del_p.K136del|LYAR_uc003ght.2_In_Frame_Del_p.K253del	NM_001145725	NP_001139197	Q9NX58	LYAR_HUMAN	Ly1 antibody reactive homolog	253	Lys-rich.					nucleolus	metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CCTTGCGCTGCTTCTTCTTCTTG	0.601													7	1761	---	---	---	---					
PI4K2B	55300	broad.mit.edu	37	4	25278792	25278792	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:25278792delT	uc003grk.2	+	10	1562	c.1429delT	c.(1429-1431)TTTfs	p.F477fs	PI4K2B_uc011bxs.1_Frame_Shift_Del_p.F381fs	NM_018323	NP_060793	Q8TCG2	P4K2B_HUMAN	phosphatidylinositol 4-kinase type 2 beta	477						cytoplasm|membrane	1-phosphatidylinositol 4-kinase activity|ATP binding			ovary(2)|skin(2)	4		Breast(46;0.173)				CAGGAAGCCATTTTTTTCCTC	0.393													8	576	---	---	---	---					
UGDH	7358	broad.mit.edu	37	4	39515752	39515753	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:39515752_39515753insA	uc003guk.1	-	3	530_531	c.214_215insT	c.(214-216)TCTfs	p.S72fs	UGDH_uc011byp.1_5'UTR|UGDH_uc003gul.1_Frame_Shift_Ins_p.S72fs	NM_003359	NP_003350	O60701	UGDH_HUMAN	UDP-glucose dehydrogenase	72					glycosaminoglycan biosynthetic process|UDP-glucose metabolic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	cytosol	electron carrier activity|NAD binding|UDP-glucose 6-dehydrogenase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4					NADH(DB00157)	AATATTGGTAGAAAAAAAAAGA	0.297													22	846	---	---	---	---					
GABRG1	2565	broad.mit.edu	37	4	46060358	46060358	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:46060358delA	uc003gxb.2	-	7	944	c.792delT	c.(790-792)TTTfs	p.F264fs		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	264	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TGCTCAGGTCAAAAAAAATTG	0.294													11	524	---	---	---	---					
AASDH	132949	broad.mit.edu	37	4	57220269	57220269	+	Frame_Shift_Del	DEL	A	-	-	rs148777026		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:57220269delA	uc003hbn.2	-	8	1472	c.1319delT	c.(1318-1320)TTGfs	p.L440fs	AASDH_uc010ihb.2_5'UTR|AASDH_uc011caa.1_Frame_Shift_Del_p.L287fs|AASDH_uc003hbo.2_Frame_Shift_Del_p.L340fs|AASDH_uc011cab.1_Intron|AASDH_uc010ihc.2_Frame_Shift_Del_p.L440fs|AASDH_uc003hbp.2_Frame_Shift_Del_p.L440fs	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	440					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				TTTTCGTCCCAAAAAAAAAAT	0.363													21	337	---	---	---	---					
UTP3	57050	broad.mit.edu	37	4	71554620	71554622	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:71554620_71554622delGAG	uc003hfo.2	+	1	425_427	c.226_228delGAG	c.(226-228)GAGdel	p.E81del		NM_020368	NP_065101	Q9NQZ2	SAS10_HUMAN	UTP3, small subunit processome component	81	Glu-rich.				brain development|chromatin modification|gene silencing	nucleolus					0			Lung(101;0.235)			ggaggatggcgaggaggaggagg	0.291													11	242	---	---	---	---					
SEC31A	22872	broad.mit.edu	37	4	83745800	83745800	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:83745800delT	uc003hnf.2	-	25	3483	c.3319delA	c.(3319-3321)ATTfs	p.I1107fs	SEC31A_uc003hnd.2_Frame_Shift_Del_p.I276fs|SEC31A_uc003hne.2_Frame_Shift_Del_p.I856fs|SEC31A_uc011ccl.1_Frame_Shift_Del_p.I1053fs|SEC31A_uc003hnl.2_Frame_Shift_Del_p.I954fs|SEC31A_uc003hng.2_Frame_Shift_Del_p.I1092fs|SEC31A_uc003hnh.2_Frame_Shift_Del_p.I1107fs|SEC31A_uc003hni.2_Frame_Shift_Del_p.I993fs|SEC31A_uc003hnj.2_Frame_Shift_Del_p.I1068fs|SEC31A_uc011ccm.1_Frame_Shift_Del_p.I1087fs|SEC31A_uc011ccn.1_Frame_Shift_Del_p.I1092fs|SEC31A_uc003hnk.2_Frame_Shift_Del_p.I1068fs|SEC31A_uc003hnm.2_Frame_Shift_Del_p.I1107fs	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	1107	Interaction with PDCD6.				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				TTCTTGGTAATTTTTTTTGTT	0.388													7	316	---	---	---	---					
CXXC4	80319	broad.mit.edu	37	4	105412094	105412096	+	In_Frame_Del	DEL	GAG	-	-	rs146939312		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:105412094_105412096delGAG	uc003hxg.2	-	1	372_374	c.357_359delCTC	c.(355-360)TCCTCG>TCG	p.119_120SS>S	uc003hxh.1_5'Flank|CXXC4_uc010ilo.2_Intron	NM_025212	NP_079488	Q9H2H0	CXXC4_HUMAN	CXXC finger 4	119_120	Poly-Ser.				negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway|zygotic specification of dorsal/ventral axis		DNA binding|PDZ domain binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;3.05e-08)		TGAGGAGGACGAGGAGGAGGAGG	0.606													8	448	---	---	---	---					
SEC24B	10427	broad.mit.edu	37	4	110402913	110402915	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:110402913_110402915delGAG	uc003hzk.2	+	4	1196_1198	c.1141_1143delGAG	c.(1141-1143)GAGdel	p.E384del	SEC24B_uc003hzl.2_Intron|SEC24B_uc011cfp.1_In_Frame_Del_p.E415del|SEC24B_uc011cfq.1_In_Frame_Del_p.E384del|SEC24B_uc011cfr.1_Intron	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	384	Poly-Glu.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		TGATgaggaagaggaggaggagg	0.369													7	914	---	---	---	---					
KIAA1109	84162	broad.mit.edu	37	4	123229254	123229254	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:123229254delT	uc003ieh.2	+	56	10037	c.9992delT	c.(9991-9993)CTTfs	p.L3331fs	KIAA1109_uc003iel.1_Frame_Shift_Del_p.L1266fs	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3331					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TTTGGGACTCTTTTTCTCCAG	0.423													7	1575	---	---	---	---					
ADAD1	132612	broad.mit.edu	37	4	123302211	123302211	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:123302211delA	uc003ieo.2	+	4	469	c.237delA	c.(235-237)CCAfs	p.P79fs	ADAD1_uc003iep.2_Frame_Shift_Del_p.P79fs|ADAD1_uc003ieq.2_Frame_Shift_Del_p.P61fs	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	79					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TCCTTCCTCCAAAAAAAATAC	0.358													10	460	---	---	---	---					
INTU	27152	broad.mit.edu	37	4	128564917	128564917	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:128564917delA	uc003ifk.1	+	2	458	c.388delA	c.(388-390)AAAfs	p.K130fs	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	130										ovary(1)	1						GCGCTGCAATAAAAAAAATAG	0.358													11	370	---	---	---	---					
INTU	27152	broad.mit.edu	37	4	128608872	128608872	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:128608872delT	uc003ifk.1	+	8	1369	c.1299delT	c.(1297-1299)CATfs	p.H433fs	INTU_uc011cgq.1_Intron	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	433										ovary(1)	1						GTTTGGATCATTTTTTTAACT	0.433													8	781	---	---	---	---					
PCDH10	57575	broad.mit.edu	37	4	134073569	134073571	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:134073569_134073571delCTG	uc003iha.2	+	1	3100_3102	c.2274_2276delCTG	c.(2272-2277)CTCTGC>CTC	p.C763del	PCDH10_uc003igz.2_In_Frame_Del_p.C763del	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	763	Cys-rich.|Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		ATTGCTGCCTCTGCTGCTGCTGC	0.581													11	281	---	---	---	---					
OTUD4	54726	broad.mit.edu	37	4	146077123	146077125	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:146077123_146077125delCAG	uc003ika.3	-	8	596_598	c.458_460delCTG	c.(457-462)GCTGAT>GAT	p.A153del	OTUD4_uc003ijz.3_In_Frame_Del_p.A153del	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	218							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					CCATTCACATCAGCAGCAGCAGC	0.340													20	642	---	---	---	---					
FRG1	2483	broad.mit.edu	37	4	190876218	190876219	+	Frame_Shift_Ins	INS	-	AT	AT			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:190876218_190876219insAT	uc003izs.2	+	5	535_536	c.344_345insAT	c.(343-345)AAAfs	p.K115fs		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	115					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		GGCTATGGAAAATATCTTGGTA	0.361													9	735	---	---	---	---					
FRG1	2483	broad.mit.edu	37	4	190882978	190882980	+	In_Frame_Del	DEL	AAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr4:190882978_190882980delAAG	uc003izs.2	+	8	822_824	c.631_633delAAG	c.(631-633)AAGdel	p.K212del		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	212					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		TCTTTACAGAAAGAAATTTCAGA	0.276													7	867	---	---	---	---					
IRX4	50805	broad.mit.edu	37	5	1879669	1879671	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:1879669_1879671delCCT	uc003jcz.2	-	4	802_804	c.683_685delAGG	c.(682-687)GAGGGG>GGG	p.E228del	IRX4_uc011cmf.1_In_Frame_Del_p.E89del	NM_016358	NP_057442	P78413	IRX4_HUMAN	iroquois homeobox 4	228	Poly-Glu.				heart development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(108;0.242)		tcctcgcccccctcctcctcctc	0.507													8	166	---	---	---	---					
CDH12	1010	broad.mit.edu	37	5	21817055	21817055	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:21817055delT	uc010iuc.2	-	6	1459	c.1001delA	c.(1000-1002)AAGfs	p.K334fs	CDH12_uc011cno.1_Frame_Shift_Del_p.K294fs|CDH12_uc003jgk.2_Frame_Shift_Del_p.K334fs	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	334	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TCTATATACCTTTTTCAATTT	0.284										HNSCC(59;0.17)			7	945	---	---	---	---					
C6	729	broad.mit.edu	37	5	41160299	41160300	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:41160299_41160300delAC	uc003jmk.2	-	11	1838_1839	c.1628_1629delGT	c.(1627-1629)TGTfs	p.C543fs	C6_uc003jml.1_Frame_Shift_Del_p.C543fs	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	543	EGF-like.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TGCCACTCTGACACACACACAG	0.475													7	950	---	---	---	---					
PLK2	10769	broad.mit.edu	37	5	57753012	57753012	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:57753012delA	uc003jrn.2	-	7	1131	c.1004delT	c.(1003-1005)TTGfs	p.L335fs		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	335					positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		ACCAACCTGCAAAAAAAAGTC	0.413													8	216	---	---	---	---					
RAPGEF6	51735	broad.mit.edu	37	5	130782332	130782332	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:130782332delT	uc003kvn.1	-	22	3471	c.3265delA	c.(3265-3267)AGGfs	p.R1089fs	RAPGEF6_uc003kvp.1_Frame_Shift_Del_p.R1139fs|RAPGEF6_uc003kvo.1_Frame_Shift_Del_p.R1102fs|RAPGEF6_uc010jdi.1_Frame_Shift_Del_p.R1097fs|RAPGEF6_uc010jdj.1_Frame_Shift_Del_p.R1097fs|RAPGEF6_uc003kvq.2_Frame_Shift_Del_p.R814fs|RAPGEF6_uc003kvr.2_Frame_Shift_Del_p.R1089fs|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc003kvm.1_Frame_Shift_Del_p.R12fs	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1089					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		CGGCGTGCCCTTTTTTTGTGA	0.453													8	883	---	---	---	---					
CDC25C	995	broad.mit.edu	37	5	137627690	137627690	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:137627690delT	uc003lcp.1	-	8	1002	c.731delA	c.(730-732)AAGfs	p.K244fs	CDC25C_uc003lcq.1_Frame_Shift_Del_p.K171fs|CDC25C_uc003lcr.1_Frame_Shift_Del_p.K244fs|CDC25C_uc011cyp.1_Frame_Shift_Del_p.K261fs|CDC25C_uc003lcs.1_Frame_Shift_Del_p.K322fs	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	244					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			AGAAAAATACTTTTTTTTAAC	0.388													7	615	---	---	---	---					
SPRY4	81848	broad.mit.edu	37	5	141694361	141694363	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:141694361_141694363delTGC	uc003lml.2	-	2	570_572	c.311_313delGCA	c.(310-315)AGCACA>ACA	p.S104del	SPRY4_uc010jgi.1_In_Frame_Del_p.S127del	NM_001127496	NP_001120968	Q9C004	SPY4_HUMAN	sprouty homolog 4 isoform 2	104	Poly-Ser.				multicellular organismal development	cytoplasm|ruffle membrane	protein binding			ovary(1)|lung(1)	2		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGAGGATGTGCTGCTGCTGCT	0.660									Testicular_Cancer_Familial_Clustering_of				8	632	---	---	---	---					
CANX	821	broad.mit.edu	37	5	179149920	179149920	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr5:179149920delT	uc003mkk.2	+	11	1475	c.1298delT	c.(1297-1299)ATTfs	p.I433fs	CANX_uc011dgp.1_Frame_Shift_Del_p.I468fs|CANX_uc003mkl.2_Frame_Shift_Del_p.I433fs|CANX_uc011dgq.1_Frame_Shift_Del_p.I325fs	NM_001746	NP_001737	P27824	CALX_HUMAN	calnexin precursor	433	Lumenal (Potential).			SDI -> LTF (in Ref. 9; AAA35696).	post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein secretion	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane|melanosome	calcium ion binding|sugar binding|unfolded protein binding				0	all_cancers(89;0.000129)|all_epithelial(37;5.59e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0413)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACCTCTGACATTTTTTTTGAC	0.423													11	557	---	---	---	---					
TUBB2B	347733	broad.mit.edu	37	6	3225002	3225004	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:3225002_3225004delCCT	uc003mvg.2	-	4	1510_1512	c.1319_1321delAGG	c.(1318-1323)GAGGGC>GGC	p.E440del	TUBB2B_uc010jnj.2_In_Frame_Del_p.E403del|TUBB2B_uc010jnk.2_In_Frame_Del_p.E368del|TUBB2B_uc003mvh.2_In_Frame_Del_p.E413del|uc011dhu.1_RNA	NM_178012	NP_821080	Q9BVA1	TBB2B_HUMAN	tubulin, beta 2B	440					'de novo' posttranslational protein folding|microtubule-based movement|neuron migration|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			large_intestine(1)	1	Ovarian(93;0.0386)	all_hematologic(90;0.108)				TCGTCCTCGCCCTCCTCCTCCTC	0.650													7	439	---	---	---	---					
RIOK1	83732	broad.mit.edu	37	6	7393450	7393452	+	In_Frame_Del	DEL	GAC	-	-	rs2274212	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:7393450_7393452delGAC	uc003mxn.2	+	2	364_366	c.190_192delGAC	c.(190-192)GACdel	p.D69del	RIOK1_uc003mxm.1_Translation_Start_Site	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	69							ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					ggagggttatgacgatgatgatg	0.300													28	432	---	---	---	---					
BTN2A2	10385	broad.mit.edu	37	6	26384091	26384093	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:26384091_26384093delCCT	uc003nhq.2	+	2	128_130	c.42_44delCCT	c.(40-45)TCCCTC>TCC	p.L24del	BTN2A2_uc011dkf.1_In_Frame_Del_p.L24del|BTN2A2_uc011dkg.1_In_Frame_Del_p.L24del|BTN2A2_uc003nhr.2_In_Frame_Del_p.L24del|BTN2A2_uc011dkh.1_In_Frame_Del_p.L24del|BTN2A2_uc003nhs.2_In_Frame_Del_p.L24del|BTN2A2_uc003nht.2_In_Frame_Del_p.L24del	NM_006995	NP_008926	Q8WVV5	BT2A2_HUMAN	butyrophilin, subfamily 2, member A2 isoform a	24					negative regulation of activated T cell proliferation|negative regulation of cellular metabolic process|negative regulation of cytokine secretion	integral to membrane					0						TGCCAGCCTCcctcctcctcctc	0.483													11	590	---	---	---	---					
ZNF184	7738	broad.mit.edu	37	6	27420810	27420810	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:27420810delT	uc003njj.2	-	5	1339	c.528delA	c.(526-528)AAAfs	p.K176fs	ZNF184_uc010jqv.2_Frame_Shift_Del_p.K176fs|ZNF184_uc003nji.2_Frame_Shift_Del_p.K176fs	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	176					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTACAGGGCCTTTTTCCCAAC	0.408													13	1281	---	---	---	---					
PPP1R10	5514	broad.mit.edu	37	6	30569334	30569334	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:30569334delG	uc003nqn.1	-	20	3367	c.2815delC	c.(2815-2817)CTGfs	p.L939fs	PPP1R10_uc010jsc.1_Frame_Shift_Del_p.L593fs	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	939					protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						CCCTAGGGCAGGGGGGGCCCA	0.572													8	374	---	---	---	---					
PPP1R10	5514	broad.mit.edu	37	6	30570264	30570266	+	In_Frame_Del	DEL	GGA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:30570264_30570266delGGA	uc003nqn.1	-	19	2712_2714	c.2160_2162delTCC	c.(2158-2163)CCTCCA>CCA	p.720_721PP>P	PPP1R10_uc010jsc.1_In_Frame_Del_p.374_375PP>P	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	720_721	Gly-rich.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GCCTCGGAATggaggaggaggag	0.601													7	285	---	---	---	---					
TAF11	6882	broad.mit.edu	37	6	34846381	34846381	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:34846381delT	uc003ojw.1	-	5	707	c.622delA	c.(622-624)ATCfs	p.I208fs	UHRF1BP1_uc010jvm.1_Intron|TAF11_uc011dsr.1_3'UTR	NM_005643	NP_005634	Q15544	TAF11_HUMAN	TBP-associated factor 11	208					positive regulation by host of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	transcription factor TFIID complex	protein N-terminus binding|thyroid hormone receptor binding|transcription coactivator activity|vitamin D receptor binding				0						AAGAAGATGATTTTTTTGTGC	0.423													7	679	---	---	---	---					
TREML2	79865	broad.mit.edu	37	6	41168714	41168716	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:41168714_41168716delCAG	uc010jxm.1	-	1	210_212	c.31_33delCTG	c.(31-33)CTGdel	p.L11del		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	11					T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCTGTGGCCACAGCAGCAGCAGC	0.631													19	225	---	---	---	---					
MDFI	4188	broad.mit.edu	37	6	41621169	41621171	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:41621169_41621171delCTG	uc003oqp.3	+	6	926_928	c.597_599delCTG	c.(595-600)CTCTGC>CTC	p.C204del	MDFI_uc003oqq.3_In_Frame_Del_p.C204del|MDFI_uc010jxn.2_In_Frame_Del_p.C204del	NM_005586	NP_005577	Q99750	MDFI_HUMAN	MyoD family inhibitor	204	Cys-rich.				cytoplasmic sequestering of transcription factor|dorsal/ventral axis specification|negative regulation of DNA binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of Wnt receptor signaling pathway	cytoplasm|nucleus					0	Ovarian(28;0.0327)|Colorectal(47;0.121)		Colorectal(64;0.0123)|COAD - Colon adenocarcinoma(64;0.0264)|KIRC - Kidney renal clear cell carcinoma(1;0.138)			ACTCGTGCCTCTGCTGCTGCTGC	0.655													14	611	---	---	---	---					
UBR2	23304	broad.mit.edu	37	6	42625778	42625778	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:42625778delA	uc011dur.1	+	27	2889	c.2889delA	c.(2887-2889)CCAfs	p.P963fs	UBR2_uc011dus.1_Frame_Shift_Del_p.P608fs|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	963					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			GTGAAGCGCCAAAAAATTCTC	0.383													9	1574	---	---	---	---					
KIAA0240	23506	broad.mit.edu	37	6	42823616	42823616	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:42823616delA	uc003osn.1	+	9	2220	c.2069delA	c.(2068-2070)CAAfs	p.Q690fs	KIAA0240_uc011duw.1_Frame_Shift_Del_p.Q690fs|KIAA0240_uc003osp.1_Frame_Shift_Del_p.Q690fs	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	690										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			TCGGGAGGACAAAAAAGGCCT	0.388													7	899	---	---	---	---					
RNGTT	8732	broad.mit.edu	37	6	89638988	89638988	+	Splice_Site	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:89638988delT	uc003pmr.2	-	3	395	c.175_splice	c.e3-1	p.V59_splice	RNGTT_uc003pms.2_Splice_Site_p.V59_splice|RNGTT_uc011dzu.1_Splice_Site|RNGTT_uc003pmt.2_Splice_Site_p.V59_splice	NM_003800	NP_003791	O60942	MCE1_HUMAN	RNA guanylyltransferase and 5'-phosphatase						interspecies interaction between organisms|mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	GTP binding|mRNA guanylyltransferase activity|polynucleotide 5'-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;4.07e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;6.86e-05)		BRCA - Breast invasive adenocarcinoma(108;0.151)		CATTTTAACCTAAAAAAAAAA	0.299													8	315	---	---	---	---					
KIAA1919	91749	broad.mit.edu	37	6	111587361	111587361	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:111587361delT	uc003puv.3	+	4	1018	c.596delT	c.(595-597)ATTfs	p.I199fs		NM_153369	NP_699200	Q5TF39	NAGT1_HUMAN	sodium-dependent glucose transporter 1	199	Helical; (Potential).				carbohydrate transport|sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(3)	3		all_cancers(87;2.35e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.0209)		OV - Ovarian serous cystadenocarcinoma(136;0.055)|all cancers(137;0.0871)|Epithelial(106;0.0884)		GTTTCTGTCATTTTTTTTTGT	0.368													9	241	---	---	---	---					
FYN	2534	broad.mit.edu	37	6	111983042	111983042	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:111983042delT	uc003pvj.2	-	13	1854	c.1514delA	c.(1513-1515)AAGfs	p.K505fs	FYN_uc003pvi.2_Frame_Shift_Del_p.K450fs|FYN_uc003pvk.2_Frame_Shift_Del_p.K505fs|FYN_uc003pvh.2_Frame_Shift_Del_p.K502fs	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	505	Protein kinase.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	TTCAGGGTCCTTTTTCCAGCA	0.562													9	1366	---	---	---	---					
EPB41L2	2037	broad.mit.edu	37	6	131191073	131191075	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:131191073_131191075delCTG	uc003qch.2	-	15	2417_2419	c.2235_2237delCAG	c.(2233-2238)AGCAGT>AGT	p.745_746SS>S	EPB41L2_uc003qce.1_In_Frame_Del_p.123_124SS>S|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_In_Frame_Del_p.675_676SS>S|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_In_Frame_Del_p.675_676SS>S|EPB41L2_uc003qcd.1_5'Flank|EPB41L2_uc003qcj.1_In_Frame_Del_p.142_143SS>S	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	745_746					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CTCACTCTCACTGCTGCTGCTGC	0.562													8	564	---	---	---	---					
AIG1	51390	broad.mit.edu	37	6	143457987	143457987	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:143457987delT	uc003qjh.2	+	2	197	c.157delT	c.(157-159)TTTfs	p.F53fs	AIG1_uc003qjf.2_Frame_Shift_Del_p.F43fs|AIG1_uc003qji.2_Intron|AIG1_uc011edw.1_Frame_Shift_Del_p.F53fs|AIG1_uc003qjg.2_Frame_Shift_Del_p.F53fs	NM_016108	NP_057192	Q9NVV5	AIG1_HUMAN	androgen-induced 1	53	Helical; (Potential).					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(155;2.34e-05)|GBM - Glioblastoma multiforme(68;0.0246)		CCAGGCTGTCTTTTTTGGCAT	0.507													8	1361	---	---	---	---					
GRM1	2911	broad.mit.edu	37	6	146755399	146755401	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr6:146755399_146755401delCAG	uc010khw.1	+	9	3522_3524	c.3052_3054delCAG	c.(3052-3054)CAGdel	p.Q1022del	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1022	Gln/Pro-rich.|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCCTCCTCTCCAGCAGCAGCAGC	0.660													9	984	---	---	---	---					
TWISTNB	221830	broad.mit.edu	37	7	19738111	19738113	+	In_Frame_Del	DEL	TTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:19738111_19738113delTTC	uc003sup.1	-	4	864_866	c.843_845delGAA	c.(841-846)AAGAAA>AAA	p.281_282KK>K		NM_001002926	NP_001002926	Q3B726	RPA43_HUMAN	TWIST neighbor	281_282	Lys-rich.					microtubule cytoskeleton|nucleolus	DNA-directed RNA polymerase activity			ovary(1)	1						CTGGTGCTTTTTCTTCTTCTTCT	0.433													8	2088	---	---	---	---					
MPP6	51678	broad.mit.edu	37	7	24705666	24705666	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:24705666delA	uc003swx.2	+	9	1209	c.910delA	c.(910-912)AAAfs	p.K304fs	MPP6_uc003swy.2_Frame_Shift_Del_p.K304fs|MPP6_uc010kur.2_5'UTR	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	304					protein complex assembly		protein binding				0						TATAAGTAGCAAAAAAAAGAA	0.299													7	1043	---	---	---	---					
C7orf31	136895	broad.mit.edu	37	7	25176016	25176016	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:25176016delT	uc003sxn.1	-	10	1909	c.1348delA	c.(1348-1350)ACCfs	p.T450fs	C7orf31_uc003sxm.1_Frame_Shift_Del_p.T292fs	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	450											0						GTGGGTTGGGTTTTTAGTGAC	0.373													7	2204	---	---	---	---					
HOXA11	3207	broad.mit.edu	37	7	27222461	27222462	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:27222461_27222462insT	uc003syx.2	-	2	967_968	c.895_896insA	c.(895-897)ATTfs	p.I299fs	HOXA10_uc003syw.3_5'Flank|HOXA11_uc003syy.2_RNA|HOXA11AS_uc003syz.1_5'Flank	NM_005523	NP_005514	P31270	HXA11_HUMAN	homeobox A11	299	Homeobox.				branching involved in ureteric bud morphogenesis|cartilage development involved in endochondral bone morphogenesis|developmental growth|dorsal/ventral pattern formation|mesodermal cell fate specification|positive regulation of cell development|positive regulation of chondrocyte differentiation	protein-DNA complex|transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)	2						GTCTCTGTTAATTTTTTTTTCC	0.446			T	NUP98	CML								24	648	---	---	---	---					
C7orf16	10842	broad.mit.edu	37	7	31735179	31735179	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:31735179delA	uc003tcl.2	+	3	337	c.179delA	c.(178-180)CAAfs	p.Q60fs	C7orf16_uc011kaf.1_Intron	NM_006658	NP_006649	O96001	GSUB_HUMAN	G-substrate isoform 1	60					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction				ovary(2)|central_nervous_system(1)	3			GBM - Glioblastoma multiforme(11;0.216)			GAGTCAGACCAAAAAAAACCA	0.438													8	828	---	---	---	---					
AOAH	313	broad.mit.edu	37	7	36552949	36552949	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:36552949delT	uc003tfh.3	-	21	2038	c.1637delA	c.(1636-1638)AAGfs	p.K546fs	AOAH_uc010kxf.2_Frame_Shift_Del_p.R586fs|AOAH_uc011kba.1_Frame_Shift_Del_p.K514fs	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	546					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GAGCTGCACCTTTTTCCAGAA	0.502													7	376	---	---	---	---					
INHBA	3624	broad.mit.edu	37	7	41729741	41729743	+	In_Frame_Del	DEL	TTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:41729741_41729743delTTC	uc003thq.2	-	2	1021_1023	c.786_788delGAA	c.(784-789)AAGAAA>AAA	p.262_263KK>K	INHBA_uc003thr.2_In_Frame_Del_p.262_263KK>K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	262_263					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						ctcctcttctttcttcttcttct	0.355										TSP Lung(11;0.080)			7	185	---	---	---	---					
STX1A	6804	broad.mit.edu	37	7	73123425	73123427	+	In_Frame_Del	DEL	CAT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:73123425_73123427delCAT	uc003tyx.2	-	2	83_85	c.56_58delATG	c.(55-60)GATGTC>GTC	p.D19del	STX1A_uc003tyy.2_In_Frame_Del_p.D19del|STX1A_uc010lbj.1_In_Frame_Del_p.D19del|hsa-mir-4284|MI0015893_5'Flank	NM_004603	NP_004594	Q16623	STX1A_HUMAN	syntaxin 1A isoform 1	19	Cytoplasmic (Potential).				energy reserve metabolic process|glutamate secretion|intracellular protein transport|regulation of insulin secretion	cell junction|extracellular region|integral to membrane|neuron projection|synaptic vesicle membrane|synaptosome	SNAP receptor activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				GTGACAGCGACATCATCATCATC	0.586													10	801	---	---	---	---					
RSBN1L	222194	broad.mit.edu	37	7	77326220	77326222	+	In_Frame_Del	DEL	CCG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:77326220_77326222delCCG	uc010ldt.1	+	1	478_480	c.434_436delCCG	c.(433-438)CCCGCC>CCC	p.A151del	RSBN1L_uc003ugm.2_5'Flank|uc003ugj.1_RNA	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	151	Poly-Ala.					nucleus				ovary(1)	1						CTCCTCCTGCCCGCCGCCGCCGC	0.685													8	188	---	---	---	---					
PCLO	27445	broad.mit.edu	37	7	82764452	82764453	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:82764452_82764453delCT	uc003uhx.2	-	3	2702_2703	c.2413_2414delAG	c.(2413-2415)AGTfs	p.S805fs	PCLO_uc003uhv.2_Frame_Shift_Del_p.S805fs	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	751	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGTGGAAAACTCTGTGAGGGT	0.431													9	1003	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100283635	100283637	+	In_Frame_Del	DEL	TCC	-	-	rs142340746		TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:100283635_100283637delTCC	uc003uwg.1	-	9	2023_2025	c.1014_1016delGGA	c.(1012-1017)GAGGAA>GAA	p.338_339EE>E		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	338_339	Poly-Glu.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					TTCGGAAGGTTCCTCCTCCTCCT	0.675													7	415	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100284335	100284337	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:100284335_100284337delCCT	uc003uwg.1	-	7	1638_1640	c.629_631delAGG	c.(628-633)GAGGGC>GGC	p.E210del		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	210	Poly-Glu.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTCCAGCTGCcctcctcctcctc	0.616													8	251	---	---	---	---					
SRRT	51593	broad.mit.edu	37	7	100482040	100482042	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:100482040_100482042delAGG	uc003uwy.2	+	8	1077_1079	c.809_811delAGG	c.(808-813)CAGGAG>CAG	p.E275del	SRRT_uc010lhl.1_In_Frame_Del_p.E275del|SRRT_uc003uxa.2_In_Frame_Del_p.E275del|SRRT_uc003uwz.2_In_Frame_Del_p.E275del	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	275	Glu-rich.				cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						ATCCTGGAGCAGGAGGAGGAGGA	0.596													7	99	---	---	---	---					
LAMB1	3912	broad.mit.edu	37	7	107572729	107572730	+	Frame_Shift_Ins	INS	-	C	C	rs57244800	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:107572729_107572730insC	uc003vew.2	-	28	4616_4617	c.4281_4282insG	c.(4279-4284)GGGCCTfs	p.G1427fs	LAMB1_uc003vev.2_Frame_Shift_Ins_p.G1451fs|LAMB1_uc003veu.2_5'Flank	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1427_1428	Domain alpha.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCACAGCCAGGCCCCCCACACT	0.584													9	1069	---	---	---	---					
FOXP2	93986	broad.mit.edu	37	7	114270016	114270018	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:114270016_114270018delCAG	uc003vhb.2	+	5	927_929	c.553_555delCAG	c.(553-555)CAGdel	p.Q191del	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_In_Frame_Del_p.Q216del|FOXP2_uc003vha.2_In_Frame_Del_p.Q99del|FOXP2_uc011kmu.1_In_Frame_Del_p.Q208del|FOXP2_uc011kmv.1_In_Frame_Del_p.Q191del|FOXP2_uc010ljz.1_In_Frame_Del_p.Q99del|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_In_Frame_Del_p.Q191del|FOXP2_uc003vgx.2_In_Frame_Del_p.Q191del|FOXP2_uc003vhd.2_In_Frame_Del_p.Q191del|FOXP2_uc003vhc.2_In_Frame_Del_p.Q216del	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	191	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						gcagcagcaacagcagcagcagc	0.172													8	257	---	---	---	---					
ZNF800	168850	broad.mit.edu	37	7	127015056	127015057	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:127015056_127015057insT	uc003vlx.1	-	5	596_597	c.333_334insA	c.(331-336)CAAGCCfs	p.Q111fs	ZNF800_uc003vlw.1_Frame_Shift_Ins_p.Q14fs|ZNF800_uc003vly.1_Frame_Shift_Ins_p.Q111fs|ZNF800_uc010lla.2_Frame_Shift_Ins_p.Q111fs	NM_176814	NP_789784	Q2TB10	ZN800_HUMAN	zinc finger protein 800	111_112					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCATTTATGGCTTGGCTTTGTT	0.327											OREG0003806	type=REGULATORY REGION|Gene=BC037348|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	712	---	---	---	---					
OR9A4	130075	broad.mit.edu	37	7	141619203	141619203	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:141619203delT	uc003vwu.1	+	1	528	c.528delT	c.(526-528)AATfs	p.N176fs		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TGGTGAACAATTTTTTTTGTG	0.383													10	1054	---	---	---	---					
XRCC2	7516	broad.mit.edu	37	7	152346220	152346220	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr7:152346220delA	uc003wld.2	-	3	436	c.350delT	c.(349-351)TTGfs	p.L117fs		NM_005431	NP_005422	O43543	XRCC2_HUMAN	X-ray repair cross complementing protein 2	117					meiosis	nucleus	ATP binding|DNA binding|DNA-dependent ATPase activity			breast(1)|liver(1)	2		all_hematologic(28;0.0592)|Prostate(32;0.081)	OV - Ovarian serous cystadenocarcinoma(82;0.0423)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0429)		GCAGTACACCAAAAAAAATCT	0.393								Homologous_recombination					9	566	---	---	---	---					
MCPH1	79648	broad.mit.edu	37	8	6289099	6289099	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:6289099delA	uc003wqi.2	+	4	381	c.313delA	c.(313-315)AAAfs	p.K105fs	MCPH1_uc003wqh.2_Frame_Shift_Del_p.K105fs|MCPH1_uc011kwl.1_Frame_Shift_Del_p.K105fs	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	105						microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		AAGCCTAATTAAAAAAAAAGT	0.274													19	520	---	---	---	---					
EPB49	2039	broad.mit.edu	37	8	21926552	21926552	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:21926552delC	uc011kyt.1	+	5	504	c.275delC	c.(274-276)TCCfs	p.S92fs	EPB49_uc010ltl.2_Frame_Shift_Del_p.S92fs|EPB49_uc011kys.1_Intron|EPB49_uc010ltn.2_Frame_Shift_Del_p.S67fs|EPB49_uc011kyu.1_Frame_Shift_Del_p.S92fs|EPB49_uc011kyv.1_Frame_Shift_Del_p.S92fs|EPB49_uc010ltq.2_Frame_Shift_Del_p.S92fs	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	92					actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		AAATCCACATCCCCCCCACCA	0.602													7	793	---	---	---	---					
PBK	55872	broad.mit.edu	37	8	27668477	27668479	+	In_Frame_Del	DEL	TCA	-	-	rs116080983	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:27668477_27668479delTCA	uc003xgi.2	-	7	969_971	c.768_770delTGA	c.(766-771)GATGAA>GAA	p.D256del	ESCO2_uc010luy.1_Intron|PBK_uc011lap.1_In_Frame_Del_p.D267del	NM_018492	NP_060962	Q96KB5	TOPK_HUMAN	PDZ binding kinase	256	Protein kinase.				mitosis		ATP binding|protein binding|protein serine/threonine kinase activity				0		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0213)|KIRC - Kidney renal clear cell carcinoma(542;0.101)|Kidney(114;0.121)|Colorectal(74;0.141)		ATTCATACCTTCATCATCATCAT	0.300													7	336	---	---	---	---					
C8orf80	389643	broad.mit.edu	37	8	27888776	27888776	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:27888776delT	uc003xgm.3	-	15	2035	c.1892delA	c.(1891-1893)AATfs	p.N631fs		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	631						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GATCAGGAAATTTTTTTTGCA	0.453													9	1107	---	---	---	---					
NRG1	3084	broad.mit.edu	37	8	32614021	32614021	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:32614021delC	uc003xiv.2	+	9	1421	c.904delC	c.(904-906)CCCfs	p.P302fs	NRG1_uc011lbf.1_Frame_Shift_Del_p.P299fs|NRG1_uc010lvo.2_Frame_Shift_Del_p.P299fs|NRG1_uc003xiu.2_Frame_Shift_Del_p.P307fs|NRG1_uc003xiw.2_Frame_Shift_Del_p.P299fs|NRG1_uc003xit.2_Frame_Shift_Del_p.P302fs|NRG1_uc010lvr.2_Frame_Shift_Del_p.P44fs|NRG1_uc010lvs.2_Frame_Shift_Del_p.P44fs|NRG1_uc010lvp.2_Frame_Shift_Del_p.P256fs|NRG1_uc010lvq.2_Frame_Shift_Del_p.P239fs|NRG1_uc011lbg.1_Frame_Shift_Del_p.P148fs|NRG1_uc011lbh.1_Frame_Shift_Del_p.P145fs|NRG1_uc003xja.2_Frame_Shift_Del_p.P113fs	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	302	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		TCCTAACCCACCCCCCGAGAA	0.493													7	733	---	---	---	---					
CHD7	55636	broad.mit.edu	37	8	61769038	61769040	+	In_Frame_Del	DEL	GGA	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:61769038_61769040delGGA	uc003xue.2	+	34	7676_7678	c.7199_7201delGGA	c.(7198-7203)CGGAGG>CGG	p.2400_2401RR>R		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2400_2401	Potential.|Poly-Arg.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CCTCGCCAGCGGAGGAGGAGGAG	0.512													9	163	---	---	---	---					
LRRCC1	85444	broad.mit.edu	37	8	86038947	86038948	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:86038947_86038948delAG	uc003ycw.2	+	9	1450_1451	c.1296_1297delAG	c.(1294-1299)CAAGAGfs	p.Q432fs	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_Frame_Shift_Del_p.Q133fs|LRRCC1_uc003ycx.2_Frame_Shift_Del_p.Q339fs|LRRCC1_uc003ycy.2_Frame_Shift_Del_p.Q412fs	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	432_433	Potential.				cell division|mitosis	centriole|nucleus					0						AGCTAGACCAAGAGAGAGAGAA	0.267													8	341	---	---	---	---					
TP53INP1	94241	broad.mit.edu	37	8	95952409	95952411	+	In_Frame_Del	DEL	TCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:95952409_95952411delTCT	uc003yhg.2	-	3	534_536	c.150_152delAGA	c.(148-153)GAAGAG>GAG	p.50_51EE>E	C8orf38_uc003yhe.1_Intron|C8orf38_uc003yhf.2_Intron|TP53INP1_uc003yhh.2_In_Frame_Del_p.50_51EE>E	NM_033285	NP_150601	Q96A56	T53I1_HUMAN	tumor protein p53 inducible nuclear protein 1	50_51	Glu-rich.				apoptosis	PML body					0	Breast(36;8.75e-07)					GATGTCCTCCTCTTCTTCTTCTT	0.458													19	290	---	---	---	---					
RGS22	26166	broad.mit.edu	37	8	100990177	100990178	+	Frame_Shift_Ins	INS	-	T	T	rs7841915	by1000genomes	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:100990177_100990178insT	uc003yjb.1	-	23	3681_3682	c.3486_3487insA	c.(3484-3489)AAATTGfs	p.K1162fs	RGS22_uc003yja.1_Frame_Shift_Ins_p.K981fs|RGS22_uc003yjc.1_Frame_Shift_Ins_p.K1150fs	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	1162_1163	Potential.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			AGGACTGCCAATTTTTTTTTCT	0.312													14	393	---	---	---	---					
CSMD3	114788	broad.mit.edu	37	8	113241029	113241029	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:113241029delA	uc003ynu.2	-	70	11079	c.10920delT	c.(10918-10920)TTTfs	p.F3640fs	CSMD3_uc003yns.2_Frame_Shift_Del_p.F2842fs|CSMD3_uc003ynt.2_Frame_Shift_Del_p.F3600fs|CSMD3_uc011lhx.1_Frame_Shift_Del_p.F3471fs	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3640	Helical; (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATATAAGTGCAAAAAAAGGCA	0.303										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	557	---	---	---	---					
ATAD2	29028	broad.mit.edu	37	8	124368685	124368685	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:124368685delA	uc003yqh.3	-	13	1698	c.1590delT	c.(1588-1590)TTTfs	p.F530fs	ATAD2_uc011lii.1_Frame_Shift_Del_p.F321fs|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Frame_Shift_Del_p.F530fs	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	530					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CAATTTCGTCAAAAAAAATAA	0.413													14	287	---	---	---	---					
MYC	4609	broad.mit.edu	37	8	128750605	128750607	+	In_Frame_Del	DEL	CAG	-	-	rs61752959	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:128750605_128750607delCAG	uc003ysh.1	+	3	610_612	c.97_99delCAG	c.(97-99)CAGdel	p.Q37del	MYC_uc003ysi.2_In_Frame_Del_p.Q52del	NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	37	Poly-Gln.				branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		GAACTTCTACCAGCAGCAGCAGC	0.611		3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL						OREG0018982	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	466	---	---	---	---					
EIF2C2	27161	broad.mit.edu	37	8	141554345	141554345	+	Frame_Shift_Del	DEL	G	-	-	rs148575703	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr8:141554345delG	uc003yvn.2	-	14	1846	c.1806delC	c.(1804-1806)CCCfs	p.P602fs	EIF2C2_uc010men.2_Frame_Shift_Del_p.P525fs|EIF2C2_uc010meo.2_Frame_Shift_Del_p.P602fs	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	602	Piwi.				mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CATCCCCGGCGGGGGGGTGAG	0.647													7	1086	---	---	---	---					
PTPLAD2	401494	broad.mit.edu	37	9	21007045	21007046	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:21007045_21007046insT	uc010miq.1	-	7	735_736	c.689_690insA	c.(688-690)AAGfs	p.K230fs	PTPLAD2_uc003zoj.1_Frame_Shift_Ins_p.K193fs|PTPLAD2_uc010mir.1_Frame_Shift_Ins_p.K230fs	NM_001010915	NP_001010915	Q5VWC8	HACD4_HUMAN	protein tyrosine phosphatase-like A domain	230	Cytoplasmic (Potential).|Poly-Lys.				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	lyase activity			skin(1)	1				Lung(24;6.02e-14)|LUSC - Lung squamous cell carcinoma(38;1.29e-10)		TTCACATCTTCTTTTTTTTAAT	0.371													14	551	---	---	---	---					
ACO1	48	broad.mit.edu	37	9	32420980	32420980	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:32420980delT	uc003zqw.3	+	8	1080	c.925delT	c.(925-927)TTTfs	p.F309fs	ACO1_uc010mjh.1_Frame_Shift_Del_p.F143fs|ACO1_uc003zqx.3_Frame_Shift_Del_p.F309fs|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	309					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		AACTGCTGCCTTTTTCCCAGT	0.483													7	1172	---	---	---	---					
HRCT1	646962	broad.mit.edu	37	9	35906348	35906350	+	In_Frame_Del	DEL	CTG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:35906348_35906350delCTG	uc003zyr.1	+	1	160_162	c.64_66delCTG	c.(64-66)CTGdel	p.L28del		NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	28	Helical; (Potential).					integral to membrane					0						TGTGGCGGTCctgctgctgctgc	0.601													13	117	---	---	---	---					
PALM2-AKAP2	445815	broad.mit.edu	37	9	112705448	112705448	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:112705448delA	uc004bei.2	+	7	1171	c.979delA	c.(979-981)AAAfs	p.K327fs	PALM2_uc004bef.2_Frame_Shift_Del_p.K329fs|PALM2_uc004beg.2_Frame_Shift_Del_p.K295fs|PALM2_uc004beh.3_Frame_Shift_Del_p.K327fs|PALM2-AKAP2_uc004bek.3_Intron|PALM2-AKAP2_uc004bej.3_Intron|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:Variant_position_missing_in_Q9Y2D5_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						AGAGGAGACGAAAAAGGTGCT	0.507													8	562	---	---	---	---					
CEL	1056	broad.mit.edu	37	9	135941982	135941982	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:135941982delG	uc010naa.1	+	5	629	c.613delG	c.(613-615)GGGfs	p.G205fs		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	202					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		CGCGGCCTTCGGGGGGGACCC	0.642													7	1064	---	---	---	---					
C9orf69	90120	broad.mit.edu	37	9	139008444	139008446	+	In_Frame_Del	DEL	CAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:139008444_139008446delCAG	uc004cgx.3	-	2	826_828	c.375_377delCTG	c.(373-378)TGCTGG>TGG	p.C125del	C9orf69_uc004cgy.2_RNA	NM_152833	NP_690046			hypothetical protein LOC90120												0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.58e-07)|Epithelial(140;6.42e-06)		GCCGGCGGCCCAGCAGCAGCAGC	0.685													8	148	---	---	---	---					
GRIN1	2902	broad.mit.edu	37	9	140056884	140056886	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:140056884_140056886delGAG	uc004clk.2	+	13	2110_2112	c.1780_1782delGAG	c.(1780-1782)GAGdel	p.E598del	GRIN1_uc004cli.1_In_Frame_Del_p.E273del|GRIN1_uc004clj.1_In_Frame_Del_p.E595del|GRIN1_uc004cll.2_In_Frame_Del_p.E598del|GRIN1_uc004clm.2_In_Frame_Del_p.E598del|GRIN1_uc004cln.2_In_Frame_Del_p.E616del|GRIN1_uc004clo.2_In_Frame_Del_p.E616del	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	598	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	GGTGAACAGCGAGGAGGAGGAGG	0.739													11	231	---	---	---	---					
TPRN	286262	broad.mit.edu	37	9	140087025	140087027	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chr9:140087025_140087027delTCC	uc004clt.2	-	2	1659_1661	c.1659_1661delGGA	c.(1657-1662)GAGGAA>GAA	p.553_554EE>E	TPRN_uc004clu.2_In_Frame_Del_p.553_554EE>E	NM_173691	NP_775962	Q4KMQ1	TPRN_HUMAN	hypothetical protein LOC286262 isoform 2	614_615	Glu-rich.				sensory perception of sound	stereocilium					0						ctcttcctcttcctcctcctcct	0.374													7	112	---	---	---	---					
TXLNG	55787	broad.mit.edu	37	X	16850849	16850850	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:16850849_16850850delAG	uc004cxq.1	+	6	1019_1020	c.968_969delAG	c.(967-969)CAGfs	p.Q323fs	TXLNG_uc010ney.1_Frame_Shift_Del_p.Q191fs|TXLNG_uc004cxr.1_5'Flank	NM_018360	NP_060830	Q9NUQ3	TXLNG_HUMAN	gamma-taxilin	323	Potential.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane				lung(1)	1						GAAAAACATCAGAGAGAGAGAG	0.386													13	448	---	---	---	---					
KLHL34	257240	broad.mit.edu	37	X	21674920	21674922	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:21674920_21674922delCTC	uc004czz.1	-	1	1527_1529	c.985_987delGAG	c.(985-987)GAGdel	p.E329del		NM_153270	NP_695002	Q8N239	KLH34_HUMAN	kelch-like 34	329	Kelch 1.|Glu-rich.									ovary(1)	1						TGAGCTCCCActcctcctcctcc	0.527													7	101	---	---	---	---					
DMD	1756	broad.mit.edu	37	X	32361293	32361293	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:32361293delT	uc004dda.1	-	40	5941	c.5697delA	c.(5695-5697)AAAfs	p.K1899fs	DMD_uc004dcw.2_Frame_Shift_Del_p.K555fs|DMD_uc004dcx.2_Frame_Shift_Del_p.K558fs|DMD_uc004dcz.2_Frame_Shift_Del_p.K1776fs|DMD_uc004dcy.1_Frame_Shift_Del_p.K1895fs|DMD_uc004ddb.1_Frame_Shift_Del_p.K1891fs|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1899	Spectrin 13.|Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GGCTGGCTAATTTTTTTTCAA	0.358													8	967	---	---	---	---					
NAP1L2	4674	broad.mit.edu	37	X	72433664	72433666	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:72433664_72433666delTCC	uc004ebi.2	-	1	1019_1021	c.663_665delGGA	c.(661-666)GAGGAC>GAC	p.E221del	NAP1L2_uc011mqj.1_In_Frame_Del_p.E79del	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	221	Glu-rich (acidic).				nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					CTCAATGTCGtcctcctcctcct	0.330													16	243	---	---	---	---					
TSIX	9383	broad.mit.edu	37	X	73046080	73046080	+	RNA	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:73046080delT	uc004ebn.2	+	1		c.34041delT			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						AGCCTGGCACTTTTTTTTCCC	0.423													10	859	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76778785	76778787	+	In_Frame_Del	DEL	TCT	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:76778785_76778787delTCT	uc004ecp.3	-	31	7024_7026	c.6792_6794delAGA	c.(6790-6795)GAAGAG>GAG	p.2264_2265EE>E	ATRX_uc004ecq.3_In_Frame_Del_p.2226_2227EE>E|ATRX_uc004eco.3_In_Frame_Del_p.2049_2050EE>E	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2264_2265	Poly-Glu.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTCAGTCAACTCTTCTTCTTCTT	0.369			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						17	1417	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76907782	76907784	+	In_Frame_Del	DEL	TCC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:76907782_76907784delTCC	uc004ecp.3	-	15	4609_4611	c.4377_4379delGGA	c.(4375-4380)GAGGAA>GAA	p.1459_1460EE>E	ATRX_uc004ecq.3_In_Frame_Del_p.1421_1422EE>E|ATRX_uc004eco.3_In_Frame_Del_p.1244_1245EE>E	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1459_1460	Poly-Glu.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ctcctcctcttcctcctcctcct	0.212			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						15	578	---	---	---	---					
NAP1L3	4675	broad.mit.edu	37	X	92928153	92928155	+	In_Frame_Del	DEL	TGC	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:92928153_92928155delTGC	uc004efq.2	-	1	454_456	c.149_151delGCA	c.(148-153)AGCACT>ACT	p.S50del	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	50	Ser-rich.				nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						ctgccactagtgctgctgctgct	0.217													8	121	---	---	---	---					
RPL36A	6173	broad.mit.edu	37	X	100646805	100646805	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:100646805delA	uc004ehk.2	+	3	256	c.172delA	c.(172-174)AAAfs	p.K58fs	BTK_uc010nno.2_5'Flank|RPL36A_uc004ehj.1_Frame_Shift_Del_p.K58fs	NM_021029	NP_066357	P83881	RL36A_HUMAN	ribosomal protein L36a	58					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	protein binding|structural constituent of ribosome				0						GATTTTCCGGAAAAAGGTGAG	0.418													7	904	---	---	---	---					
BCORL1	63035	broad.mit.edu	37	X	129146962	129146963	+	Frame_Shift_Ins	INS	-	G	G	rs141901231	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:129146962_129146963insG	uc004evb.1	+	4	328_329	c.214_215insG	c.(214-216)CGGfs	p.R72fs	BCORL1_uc010nrd.1_5'UTR	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	72					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						CAGCAATGCCCGGGGGGCAGAC	0.569													7	1121	---	---	---	---					
ARHGAP36	158763	broad.mit.edu	37	X	130215725	130215725	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:130215725delT	uc004evz.2	+	2	431	c.86delT	c.(85-87)ATTfs	p.I29fs	ARHGAP36_uc004ewa.2_Intron|ARHGAP36_uc004ewb.2_Intron|ARHGAP36_uc004ewc.2_5'Flank	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	29					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						TCCGCCTTCATTTTTTTAGTG	0.542													7	1389	---	---	---	---					
HTATSF1	27336	broad.mit.edu	37	X	135585048	135585050	+	In_Frame_Del	DEL	AAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:135585048_135585050delAAG	uc004ezw.2	+	6	1104_1106	c.682_684delAAG	c.(682-684)AAGdel	p.K232del	HTATSF1_uc004ezx.2_In_Frame_Del_p.K232del	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	232	Poly-Lys.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGATGCCTCAAAGAAGAAGAAGA	0.335													15	745	---	---	---	---					
MAGEC1	9947	broad.mit.edu	37	X	140994114	140994116	+	In_Frame_Del	DEL	CTC	-	-	rs138660605	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:140994114_140994116delCTC	uc004fbt.2	+	4	1210_1212	c.924_926delCTC	c.(922-927)AGCTCC>AGC	p.308_309SS>S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	308_309				SSS -> PSF (in Ref. 2; AAC24227).			protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCTGTGAGCTCCTCCTCCTCC	0.483										HNSCC(15;0.026)			13	2112	---	---	---	---					
SPANXN2	494119	broad.mit.edu	37	X	142803692	142803692	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:142803692delT	uc004fbz.2	-	1	825	c.71delA	c.(70-72)AATfs	p.N24fs		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	24										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TACCTCATCATTTTTTTTGTT	0.239													19	1101	---	---	---	---					
CD99L2	83692	broad.mit.edu	37	X	149937526	149937528	+	In_Frame_Del	DEL	GGC	-	-	rs7877654	byFrequency	TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:149937526_149937528delGGC	uc004fel.2	-	11	886_888	c.768_770delGCC	c.(766-771)CCGCCC>CCC	p.256_257PP>P	CD99L2_uc004fek.2_RNA|CD99L2_uc004fem.2_In_Frame_Del_p.207_208PP>P|CD99L2_uc004fen.2_In_Frame_Del_p.184_185PP>P|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_In_Frame_Del_p.183_184PP>P	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	256_257	Cytoplasmic (Potential).|Poly-Pro.				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGCTGGTTCGGGCGGCGGCGGCG	0.611													12	1087	---	---	---	---					
MAGEA10	4109	broad.mit.edu	37	X	151303906	151303908	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:151303906_151303908delAGG	uc004ffk.2	-	5	593_595	c.185_187delCCT	c.(184-189)TCCTGC>TGC	p.S62del	MAGEA10_uc004ffl.2_In_Frame_Del_p.S62del	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	62	Poly-Ser.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGGATAGCaggaggaggagga	0.419													17	602	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HZ-8003-01A-21D-2201-08	TCGA-HZ-8003-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	f024977e-2d5d-4205-937d-3c832da05272	7601f464-a2b6-4fda-9887-9419efd30388	g.chrX:152087570_152087572delGAG	uc010ntv.1	+	7	512_514	c.475_477delGAG	c.(475-477)GAGdel	p.E165del	ZNF185_uc011myg.1_In_Frame_Del_p.E165del|ZNF185_uc011myh.1_In_Frame_Del_p.E165del|ZNF185_uc011myi.1_In_Frame_Del_p.E165del|ZNF185_uc011myj.1_In_Frame_Del_p.E165del|ZNF185_uc011myk.1_In_Frame_Del_p.E165del|ZNF185_uc004fgw.3_In_Frame_Del_p.E30del|ZNF185_uc004fgu.2_5'UTR|ZNF185_uc004fgv.2_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.522													17	192	---	---	---	---					
