Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WASH7P	653635	broad.mit.edu	37	1	15029	15029	+	RNA	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:15029G>A	uc009vis.2	-	3		c.316C>T			WASH7P_uc009vit.2_RNA|WASH7P_uc001aae.3_RNA|WASH7P_uc009viu.2_RNA|WASH7P_uc001aab.3_RNA|WASH7P_uc001aah.3_RNA|WASH7P_uc009vir.2_RNA|WASH7P_uc009viq.2_Intron|WASH7P_uc001aac.3_RNA|WASH7P_uc009viv.2_RNA|WASH7P_uc009viw.2_RNA					Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984.												0						ACCTTGGCTCGTGGCTCTCAC	0.632000													6	20					0	0	0.010729	0	0
TTLL10	254173	broad.mit.edu	37	1	1118427	1118427	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:1118427G>A	uc001acy.2	+	11	1239	c.1088G>A	c.(1087-1089)AGG>AAG	p.R363K	TTLL10_uc010nyg.1_Missense_Mutation_p.R363K|TTLL10_uc001acz.1_Missense_Mutation_p.R290K	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	363	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GTGGTGCAGAGGTGCGGCGGC	0.721000													3	66					0	0	0.009096	0	0
ZBTB48	3104	broad.mit.edu	37	1	6649086	6649086	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:6649086G>A	uc009vmc.1	+	11	2004	c.1881G>A	c.(1879-1881)GCG>GCA	p.A627A	ZBTB48_uc001anx.2_Silent_p.A627A|ZBTB48_uc009vmd.1_Silent_p.A627A|ZBTB48_uc001any.1_Silent_p.A265A	NM_005341	NP_005332	P10074	ZBT48_HUMAN	zinc finger and BTB domain containing 48	627						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.35e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(304;0.00109)|STAD - Stomach adenocarcinoma(132;0.017)|READ - Rectum adenocarcinoma(331;0.0642)		TGGTGGTGGCGCTGCAGCCGC	0.667000													4	359					0	0	0.003080	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12885059	12885059	+	Missense_Mutation	SNP	C	G	G	rs143004725	by1000genomes	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:12885059C>G	uc001auk.2	-	4	1248	c.1052G>C	c.(1051-1053)TGC>TCC	p.C351S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	351	LRR 6.										0						GGTGGCCATGCAGATGGGATT	0.532000													5	444					0	0	0.003080	0	0
CROCC	9696	broad.mit.edu	37	1	17250968	17250968	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:17250968C>T	uc001azt.2	+	3	414	c.345C>T	c.(343-345)AGC>AGT	p.S115S	CROCC_uc009voy.1_Intron|CROCC_uc009voz.1_Intron	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	115	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		ATGCGGTCAGCGAGAGGGTGG	0.622000													6	96					0	0	0.001984	0	0
SPOCD1	90853	broad.mit.edu	37	1	32259457	32259457	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:32259457C>T	uc001bts.1	-	12	2483	c.2425G>A	c.(2425-2427)GCC>ACC	p.A809T	SPOCD1_uc001btr.1_5'Flank|SPOCD1_uc001btt.2_Missense_Mutation_p.A114T|SPOCD1_uc001btu.2_Missense_Mutation_p.A809T|SPOCD1_uc001btv.2_Missense_Mutation_p.A302T	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	809					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CAGCTCTTGGCGGCTTCGAAG	0.582000													5	597					0	0	0.014758	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370343	35370343	+	Silent	SNP	C	T	T	rs142633506		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:35370343C>T	uc001byc.2	-	1	642	c.642G>A	c.(640-642)CCG>CCA	p.P214P		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	214					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				CTCCAGAGCCCGGGCCGGGGT	0.537000													13	204					0	0	0.020292	0	0
BMP8A	353500	broad.mit.edu	37	1	39988771	39988771	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:39988771C>T	uc001cdi.2	+	6	1387	c.1041C>T	c.(1039-1041)CAC>CAT	p.H347H	PPIEL_uc001cdj.1_Intron|PPIEL_uc001cdk.2_Intron	NM_181809	NP_861525	Q7Z5Y6	BMP8A_HUMAN	bone morphogenetic protein 8A precursor	347					cartilage development|cell differentiation|growth|ossification	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(20;2.08e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;9.69e-19)|Epithelial(16;9.34e-17)|all cancers(16;1.73e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CCACCAACCACGCCATCCTGC	0.677000													16	537					0	0	0.006122	0	0
MUTYH	4595	broad.mit.edu	37	1	45795066	45795066	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:45795066T>C	uc001cnm.2	-	16	1769	c.1553A>G	c.(1552-1554)AAG>AGG	p.K518R	MUTYH_uc009vxn.2_Missense_Mutation_p.K343R|MUTYH_uc001cnf.2_Missense_Mutation_p.K493R|MUTYH_uc009vxo.2_Missense_Mutation_p.K493R|MUTYH_uc001cng.2_Missense_Mutation_p.K504R|MUTYH_uc001cnj.2_Missense_Mutation_p.K401R|MUTYH_uc001cni.2_Missense_Mutation_p.K493R|MUTYH_uc001cnh.2_Missense_Mutation_p.K494R|MUTYH_uc001cno.2_Missense_Mutation_p.K401R|MUTYH_uc001cnk.2_Missense_Mutation_p.K378R|MUTYH_uc010oll.1_Missense_Mutation_p.K202R|MUTYH_uc001cnl.2_Missense_Mutation_p.K507R|MUTYH_uc009vxp.2_Missense_Mutation_p.K521R|MUTYH_uc001cnn.2_Missense_Mutation_p.K508R	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	518					depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					CATGCGGGGCTTTTTCCGACT	0.547000			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				5	740					0	0	0.001984	0	0
SLC44A5	204962	broad.mit.edu	37	1	75685021	75685021	+	Missense_Mutation	SNP	G	A	A	rs148437935	by1000genomes	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:75685021G>A	uc001dgu.2	-	16	1331	c.1187C>T	c.(1186-1188)GCG>GTG	p.A396V	SLC44A5_uc001dgt.2_Missense_Mutation_p.A396V|SLC44A5_uc001dgs.2_Missense_Mutation_p.A354V|SLC44A5_uc001dgr.2_Missense_Mutation_p.A354V|SLC44A5_uc010oqz.1_Missense_Mutation_p.A435V|SLC44A5_uc010ora.1_Missense_Mutation_p.A390V|SLC44A5_uc010orb.1_Missense_Mutation_p.A266V	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	396	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						CCCCGATGTCGCCAAGAAACT	0.393000													8	216					0	0	0.004482	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367767	145367767	+	Missense_Mutation	SNP	G	A	A	rs77484671		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:145367767G>A	uc001end.3	+	85	10623	c.10588G>A	c.(10588-10590)GAA>AAA	p.E3530K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3455											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		atcaaagaaggaaagaagaag	0.254000													8	177					0	0	0.016723	0	0
RPTN	126638	broad.mit.edu	37	1	152128179	152128179	+	Missense_Mutation	SNP	T	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:152128179T>G	uc001ezs.1	-	3	1461	c.1396A>C	c.(1396-1398)ACA>CCA	p.T466P		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	466	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGTCTGTCTGTCTGACCATAG	0.498000													6	915					0	0	0.003163	0	0
HRNR	388697	broad.mit.edu	37	1	152192638	152192638	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:152192638G>A	uc001ezt.1	-	3	1543	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	489	5.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCCGTGGCCGGAGGAGTGAC	0.542000													5	866					0	0	0.014758	0	0
KPRP	448834	broad.mit.edu	37	1	152732688	152732688	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:152732688C>T	uc001fal.1	+	2	682	c.624C>T	c.(622-624)TTC>TTT	p.F208F		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	208	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCCCCAGTTCCAGTTGAGGC	0.562000													37	585					0	0	0.010771	0	0
NPR1	4881	broad.mit.edu	37	1	153660587	153660587	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:153660587G>A	uc001fcs.3	+	15	2728	c.2307G>A	c.(2305-2307)CTG>CTA	p.L769L	NPR1_uc010pdz.1_Silent_p.L515L|NPR1_uc010pea.1_Silent_p.L247L	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	769	Cytoplasmic (Potential).|Protein kinase.				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	CCCTGGCCCTGCAGAGTCACC	0.667000													5	339					0	0	0.014758	0	0
FCRL4	83417	broad.mit.edu	37	1	157557255	157557255	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:157557255G>A	uc001fqw.2	-	5	794	c.658C>T	c.(658-660)CGG>TGG	p.R220W	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	220	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GTGTCTGACCGCTCTGGAGGA	0.522000													6	612					0	0	0.001984	0	0
F5	2153	broad.mit.edu	37	1	169510502	169510502	+	Missense_Mutation	SNP	G	T	T	rs140018525	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:169510502G>T	uc001ggg.1	-	13	3971	c.3826C>A	c.(3826-3828)CTT>ATT	p.L1276I		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1276	2-11.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGGAGAAAGGGGCATCTGA	0.502000													10	870					9.7654e-05	0.000104098	0.007413	1	0
C1orf112	55732	broad.mit.edu	37	1	169796332	169796332	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:169796332G>A	uc001ggp.2	+	12	1299	c.989G>A	c.(988-990)AGT>AAT	p.S330N	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggq.2_Missense_Mutation_p.S330N|C1orf112_uc009wvt.2_Missense_Mutation_p.S7N|C1orf112_uc010plu.1_Missense_Mutation_p.S301N|C1orf112_uc009wvu.1_Missense_Mutation_p.S206N|C1orf112_uc001ggr.2_Missense_Mutation_p.S195N|C1orf112_uc010plv.1_Missense_Mutation_p.S272N	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	330											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTTTTGGACAGTAAATTAGGT	0.378000													5	422					0	0	0.001984	0	0
SHISA4	149345	broad.mit.edu	37	1	201858609	201858609	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:201858609G>A	uc001gxa.2	+	2	201	c.110G>A	c.(109-111)CGG>CAG	p.R37Q		NM_198149	NP_937792	Q96DD7	SHSA4_HUMAN	shisa homolog 4 precursor	37	Extracellular (Potential).					integral to membrane					0						TACCTGGACCGGAATGGCTCC	0.647000													4	302					0	0	0.014758	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:203821508C>G	uc001hac.2	+	20	3030	c.2414C>G	c.(2413-2415)TCA>TGA	p.S805*	ZC3H11A_uc001had.2_Nonsense_Mutation_p.S805*|ZC3H11A_uc001hae.2_Nonsense_Mutation_p.S805*|ZC3H11A_uc001haf.2_Nonsense_Mutation_p.S805*|ZC3H11A_uc010pqm.1_Nonsense_Mutation_p.S751*	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	805							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CTTGAGCTATCAGAAATGATT	0.378000													4	179					0	0	0.009096	0	0
CR1	1378	broad.mit.edu	37	1	207669664	207669664	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:207669664G>A	uc001hfy.2	+	1	192	c.52G>A	c.(52-54)GGT>AGT	p.G18S	CR1_uc009xcl.1_Missense_Mutation_p.G18S|CR1_uc001hfx.2_Missense_Mutation_p.G18S|CR1_uc010psg.1_Missense_Mutation_p.G18S|CR1_uc009xcj.1_Missense_Mutation_p.G18S|CR1_uc009xck.1_Missense_Mutation_p.G18S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	18					complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GCCGGCGCCCGGTCTCCCCTT	0.662000													7	94					0	0	0.003080	0	0
LAMB3	3914	broad.mit.edu	37	1	209799234	209799234	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:209799234C>T	uc001hhg.2	-	13	2125	c.1735G>A	c.(1735-1737)GTG>ATG	p.V579M	LAMB3_uc009xco.2_Missense_Mutation_p.V579M|LAMB3_uc001hhh.2_Missense_Mutation_p.V579M|LAMB3_uc010psl.1_Intron|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	579	Domain II.|Laminin EGF-like 6.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		TGGCAGGCCACGCACACCGGG	0.667000													6	65					0	0	0.001168	0	0
KCNH1	3756	broad.mit.edu	37	1	211093276	211093276	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:211093276C>T	uc001hib.2	-	7	1338	c.1168G>A	c.(1168-1170)GCA>ACA	p.A390T	KCNH1_uc001hic.2_Missense_Mutation_p.A363T	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	390	Helical; Name=Segment S5; (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		ATCCAGTGTGCAGCCAGCCCA	0.562000													6	570					0	0	0.003080	0	0
DISC1	27185	broad.mit.edu	37	1	231830019	231830019	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:231830019G>A	uc001huz.2	+	2	568	c.515G>A	c.(514-516)CGG>CAG	p.R172Q	TSNAX-DISC1_uc010pwe.1_Missense_Mutation_p.R127Q|TSNAX-DISC1_uc010pwf.1_Missense_Mutation_p.R127Q|TSNAX-DISC1_uc010pwg.1_Missense_Mutation_p.R161Q|TSNAX-DISC1_uc010pwh.1_Missense_Mutation_p.R127Q|TSNAX-DISC1_uc010pwi.1_Missense_Mutation_p.R127Q|TSNAX-DISC1_uc010pwj.1_Missense_Mutation_p.R161Q|TSNAX-DISC1_uc010pwk.1_Missense_Mutation_p.R161Q|TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pwo.1_Missense_Mutation_p.R172Q|DISC1_uc010pwp.1_Missense_Mutation_p.R172Q|DISC1_uc010pwq.1_Missense_Mutation_p.R172Q|DISC1_uc010pwr.1_Missense_Mutation_p.R172Q|DISC1_uc010pws.1_Missense_Mutation_p.R172Q|DISC1_uc010pwt.1_Missense_Mutation_p.R172Q|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_RNA|DISC1_uc010pww.1_Missense_Mutation_p.R172Q|DISC1_uc010pwx.1_RNA|DISC1_uc010pwy.1_RNA|DISC1_uc010pwz.1_RNA|DISC1_uc010pxa.1_RNA|DISC1_uc001huy.2_Missense_Mutation_p.R172Q|DISC1_uc010pxb.1_Missense_Mutation_p.R172Q|DISC1_uc010pxc.1_Missense_Mutation_p.R172Q|DISC1_uc010pxd.1_5'UTR|DISC1_uc010pxe.1_Missense_Mutation_p.R172Q|DISC1_uc009xfr.2_Missense_Mutation_p.R127Q|DISC1_uc010pxf.1_Missense_Mutation_p.R172Q|DISC1_uc010pxg.1_Missense_Mutation_p.R172Q|DISC1_uc010pxh.1_Missense_Mutation_p.R172Q|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_5'UTR|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Missense_Mutation_p.R172Q|DISC1_uc010pxn.1_5'UTR|DISC1_uc001hva.2_Missense_Mutation_p.R172Q|DISC1_uc010pwm.1_Missense_Mutation_p.R172Q|DISC1_uc001hux.1_Missense_Mutation_p.R172Q|DISC1_uc001hvc.3_Missense_Mutation_p.R172Q|DISC1_uc010pwn.1_Missense_Mutation_p.R172Q	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	172	Interaction with MAP1A.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				AGGCGTGTCCGGGCAGCAGGC	0.642000													4	269					0	0	0.014758	0	0
LYST	1130	broad.mit.edu	37	1	235972999	235972999	+	Silent	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:235972999A>G	uc001hxj.2	-	5	1294	c.1119T>C	c.(1117-1119)CCT>CCC	p.P373P	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Silent_p.P373P	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	373					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TTGGTGCAAAAGGGTCAGGCT	0.383000									Chediak-Higashi_syndrome				4	550					0	0	0.014758	0	0
OR2T10	127069	broad.mit.edu	37	1	248756293	248756293	+	Nonsense_Mutation	SNP	G	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:248756293G>C	uc010pzn.1	-	1	777	c.777C>G	c.(775-777)TAC>TAG	p.Y259*		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	259	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGGGAGCATGTAGTTGTAAA	0.438000													14	159					0	0	0.016723	0	0
LOC650623	650623	broad.mit.edu	37	10	81443821	81443821	+	RNA	SNP	C	G	G	rs150975459	by1000genomes	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:81443821C>G	uc010qlu.1	+	1		c.1091C>G				NR_027512				Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA.												0						GCAGCACCATCGCCTCAGACC	0.612000													3	88					0	0	0.014758	0	0
RPL13AP6	644511	broad.mit.edu	37	10	112696573	112696573	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:112696573T>C	uc010qrh.1	-	1	441	c.419A>G	c.(418-420)CAC>CGC	p.H140R	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GTGAGCCAGGTGCCCCAGATA	0.537000													4	43					0	0	0.001984	0	0
ZNF195	7748	broad.mit.edu	37	11	3380678	3380678	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:3380678C>T	uc001lxt.2	-	6	1738	c.1560G>A	c.(1558-1560)AAG>AAA	p.K520K	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Silent_p.K497K|ZNF195_uc001lxs.2_Silent_p.K448K|ZNF195_uc010qxr.1_Silent_p.K501K|ZNF195_uc009ydz.2_Silent_p.K475K|ZNF195_uc001lxu.2_Silent_p.K452K	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	520					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		ATTTGTAGGGCTTCTCTCCAG	0.403000													6	599					0	0	0.003080	0	0
IGSF22	283284	broad.mit.edu	37	11	18736168	18736168	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:18736168C>T	uc009yht.2	-	12	1725	c.1535G>A	c.(1534-1536)CGT>CAT	p.R512H	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	512										ovary(4)|large_intestine(2)|kidney(1)	7						TGTGGCCAGACGCTCTGGGGA	0.612000													8	151					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	11	43284450	43284450	+	RNA	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:43284450A>G	uc001mxe.1	-	2		c.486T>C								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		GCACTCTACAACTCCATAGTC	0.393000													3	63					0	0	0.009096	0	0
TRIM48	79097	broad.mit.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:55035844T>C	uc010rid.1	+	4	660	c.574T>C	c.(574-576)TAC>CAC	p.Y192H		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	176						intracellular	zinc ion binding				0						AGACATATTATACAGGTGAGT	0.338000													7	157					0	0	0.003080	0	0
DDB1	1642	broad.mit.edu	37	11	61091514	61091514	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:61091514C>T	uc001nrc.3	-	7	1084	c.858G>A	c.(856-858)GAG>GAA	p.E286E	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Silent_p.E286E|DDB1_uc010rlg.1_RNA|DDB1_uc001nrd.2_Silent_p.E286E|DDB1_uc009ynl.1_Silent_p.E173E	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	286	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						GTTCCTCCTTCTCCAAAAGCA	0.517000								NER					16	600					0	0	0.006122	0	0
DDB1	1642	broad.mit.edu	37	11	61091563	61091563	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:61091563C>G	uc001nrc.3	-	7	1035	c.809G>C	c.(808-810)AGA>ACA	p.R270T	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.R270T|DDB1_uc010rlg.1_RNA|DDB1_uc001nrd.2_Missense_Mutation_p.R270T|DDB1_uc009ynl.1_Missense_Mutation_p.R157T	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	270	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						CAGCAGGTATCTTGAGCCATT	0.493000								NER					11	549					0	0	0.013537	0	0
TBX10	347853	broad.mit.edu	37	11	67400112	67400112	+	Silent	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:67400112A>G	uc001omp.2	-	6	823	c.735T>C	c.(733-735)CCT>CCC	p.P245P	NUDT8_uc001omn.2_5'Flank|NUDT8_uc001omo.1_5'Flank	NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	245	T-box.				anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTTTGGCAAAAGGGTTGCTGG	0.587000													4	534					0	0	0.001168	0	0
NOX4	50507	broad.mit.edu	37	11	89106611	89106611	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:89106611C>T	uc001pct.2	-	12	1363	c.1124G>A	c.(1123-1125)GGA>GAA	p.G375E	NOX4_uc009yvr.2_Missense_Mutation_p.G350E|NOX4_uc001pcu.2_Missense_Mutation_p.G301E|NOX4_uc001pcw.2_Missense_Mutation_p.G68E|NOX4_uc001pcx.2_Missense_Mutation_p.G68E|NOX4_uc001pcv.2_Missense_Mutation_p.G375E|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_Missense_Mutation_p.G209E|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Missense_Mutation_p.G351E|NOX4_uc009yvq.2_Missense_Mutation_p.G351E	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	375	FAD-binding FR-type.|Extracellular (Potential).|Mediates interaction with TLR4.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				TGTCCAGTCTCCTACTATTTT	0.279000													5	647					0	0	0.001984	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418000													4	324					0	0	0.001168	0	0
NTM	50863	broad.mit.edu	37	11	132180047	132180047	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:132180047G>A	uc001qgp.2	+	5	1367	c.703G>A	c.(703-705)GTG>ATG	p.V235M	NTM_uc001qgm.2_Missense_Mutation_p.V235M|NTM_uc010sch.1_Missense_Mutation_p.V226M|NTM_uc010sci.1_Missense_Mutation_p.V235M|NTM_uc010scj.1_Missense_Mutation_p.V194M|NTM_uc001qgo.2_Missense_Mutation_p.V235M|NTM_uc001qgq.2_Missense_Mutation_p.V235M|NTM_uc001qgr.2_Translation_Start_Site	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	235	Ig-like C2-type 3.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						AGGTGTCCCCGTGGGACAAAA	0.458000													27	406					0	0	0.012213	0	0
KCNA6	3742	broad.mit.edu	37	12	4919409	4919409	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:4919409G>A	uc001qng.2	+	1	1068	c.202G>A	c.(202-204)GGA>AGA	p.G68R		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	68						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CACGCTGCTCGGAGACCCTGG	0.617000										HNSCC(72;0.22)			8	219					0	0	0.004482	0	0
PRB1	5542	broad.mit.edu	37	12	11506602	11506602	+	Silent	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:11506602T>C	uc001qzw.1	-	3	472	c.435A>G	c.(433-435)GGA>GGG	p.G145G	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	206	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|8.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGGACTTGTCTCCTTGTGGGG	0.607000													5	764					0	0	0.004482	0	0
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:25398284C>A	uc001rgp.1	-	2	216	c.35G>T	c.(34-36)GGT>GTT	p.G12V	KRAS_uc001rgq.1_Missense_Mutation_p.G12V|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12N(6)|p.G12G(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GCCTACGCCACCAGCTCCAAC	0.348000	G12D(HPAC_PANCREAS)|G12V(SW403_LARGE_INTESTINE)|G12D(HPAFII_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(NCIH441_LUNG)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(PK1_PANCREAS)|G12V(KP3_PANCREAS)|G12D(PANC0813_PANCREAS)|G12A(SW1116_LARGE_INTESTINE)|G12D(LS180_LARGE_INTESTINE)|G12V(NCIH727_LUNG)|G12V(PATU8988S_PANCREAS)|G12V(CAPAN2_PANCREAS)|G12D(KP4_PANCREAS)|G12D(LS513_LARGE_INTESTINE)|G12D(SNUC2A_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(COLO668_LUNG)|G12D(COLO678_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12D(PANC0203_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(SW900_LUNG)|G12V(LCLC97TM1_LUNG)|G12V(SW620_LARGE_INTESTINE)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(SH10TC_STOMACH)|G12V(A498_KIDNEY)|G12D(PK59_PANCREAS)|G12D(HEC1A_ENDOMETRIUM)|G12D(PANC0504_PANCREAS)|G12V(SNGM_ENDOMETRIUM)|G12A(RERFLCAD1_LUNG)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12D(ASPC1_PANCREAS)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(RCM1_LARGE_INTESTINE)|G12V(CORL23_LUNG)|G12D(SW1990_PANCREAS)|G12D(HEYA8_OVARY)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12V(HUPT4_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(HEC50B_ENDOMETRIUM)|G12V(YAPC_PANCREAS)|G12V(NCIH2444_LUNG)|G12V(HCC56_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12V(DANG_PANCREAS)|G12V(SHP77_LUNG)|G12D(AGS_STOMACH)|G12D(SKLU1_LUNG)|G12V(QGP1_PANCREAS)|G12D(L33_PANCREAS)|G12V(PANC0327_PANCREAS)|G12D(PANC1_PANCREAS)|G12V(RKN_OVARY)|G12V(PATU8902_PANCREAS)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			8	84					0.000274275	0.000290898	0.004482	1	0
KRT75	9119	broad.mit.edu	37	12	52827640	52827640	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:52827640C>T	uc001saj.2	-	1	471	c.449G>A	c.(448-450)CGC>CAC	p.R150H		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	150	Coil 1A.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GATCTGCTCGCGCTCCTCGGC	0.562000													21	497					0	0	0.014323	0	0
KRT77	374454	broad.mit.edu	37	12	53097128	53097128	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:53097128T>C	uc001saw.2	-	1	120	c.91A>G	c.(91-93)AGT>GGT	p.S31G	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	31	Head.					keratin filament	structural molecule activity			ovary(1)	1						ACTGCCGGACTCCCACCACCA	0.532000													7	196					0	0	0.001984	0	0
DYRK2	8445	broad.mit.edu	37	12	68051338	68051338	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:68051338C>T	uc001str.3	+	3	1053	c.651C>T	c.(649-651)CAC>CAT	p.H217H	DYRK2_uc001sts.3_Silent_p.H144H	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	217					apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		CCCACGATCACGTGGCTTACA	0.552000													12	154					0	0	0.013537	0	0
LRRC43	254050	broad.mit.edu	37	12	122687867	122687867	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:122687867C>T	uc009zxm.2	+	12	1874	c.1849C>T	c.(1849-1851)CCG>TCG	p.P617S	LRRC43_uc001ubw.3_Missense_Mutation_p.P432S|LRRC43_uc009zxn.2_Missense_Mutation_p.P378S|B3GNT4_uc001ubx.2_5'Flank|B3GNT4_uc001uby.2_5'Flank	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	617											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		CTCAGAAAAGCCGAAAGCCGT	0.607000													18	274					0	0	0.008871	0	0
UGGT2	55757	broad.mit.edu	37	13	96592266	96592266	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr13:96592266T>C	uc001vmt.2	-	16	1927	c.1757A>G	c.(1756-1758)CAT>CGT	p.H586R		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	586					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						AATATTAGCATGAGGAAATGT	0.249000													68	414					0	0	0.014410	0	0
MYO16	23026	broad.mit.edu	37	13	109704657	109704657	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr13:109704657A>G	uc001vqt.1	+	25	2942	c.2816A>G	c.(2815-2817)AAT>AGT	p.N939S	MYO16_uc010agk.1_Missense_Mutation_p.N961S|MYO16_uc001vqu.1_Missense_Mutation_p.N739S|MYO16_uc010tjh.1_Missense_Mutation_p.N451S	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	939	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			GCTAGTGAAAATGTCGTGATC	0.373000													34	273					0	0	0.007835	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr13:115047559C>T	uc001vup.2	+	2	308	c.271C>T	c.(271-273)CTG>TTG	p.L91L	UPF3A_uc010tkn.1_Silent_p.L91L|UPF3A_uc001vuq.2_Silent_p.L91L|UPF3A_uc001vus.2_RNA|UPF3A_uc001vur.2_RNA	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	91	Required for interaction with UPF2.				mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		GCTGCGCCCGCTGCCAGCACA	0.731000													3	25					0	0	0.004672	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216249	20216249	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:20216249C>T	uc010tkt.1	+	1	663	c.663C>T	c.(661-663)ATC>ATT	p.I221I		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTATGCTATCATCCTGATCA	0.507000													15	275					0	0	0.003163	0	0
NFKBIA	4792	broad.mit.edu	37	14	35871668	35871668	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:35871668G>A	uc001wtf.3	-	5	948	c.838C>T	c.(838-840)CTG>TTG	p.L280L	NFKBIA_uc001wte.3_Silent_p.L190L|NFKBIA_uc001wtg.3_Silent_p.L237L|NFKBIA_uc010amo.2_RNA	NM_020529	NP_065390	P25963	IKBA_HUMAN	nuclear factor of kappa light polypeptide gene	280					anti-apoptosis|apoptosis|cellular response to cold|cytoplasmic sequestering of NF-kappaB|innate immune response|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of DNA binding|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of NF-kappaB transcription factor activity|nerve growth factor receptor signaling pathway|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|I-kappaB/NF-kappaB complex|nucleus|plasma membrane	identical protein binding|NF-kappaB binding|nuclear localization sequence binding|ubiquitin protein ligase binding			breast(2)	2	Breast(36;0.0484)|Hepatocellular(127;0.158)		Lung(238;9.25e-06)|LUAD - Lung adenocarcinoma(48;1.53e-05)|Epithelial(34;0.00314)|all cancers(34;0.00891)	GBM - Glioblastoma multiforme(112;0.0222)		CTCTCTGGCAGCATCTGAAGG	0.562000													4	492					0	0	0.009096	0	0
INSM2	84684	broad.mit.edu	37	14	36004658	36004658	+	Silent	SNP	C	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:36004658C>A	uc001wth.1	+	1	1411	c.1200C>A	c.(1198-1200)GGC>GGA	p.G400G		NM_032594	NP_115983	Q96T92	INSM2_HUMAN	insulinoma-associated protein IA-6	400					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			lung(1)|skin(1)	2	Breast(36;0.122)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(9;2.16e-07)|Lung(238;2.63e-07)|Epithelial(34;0.00145)|all cancers(34;0.00452)	GBM - Glioblastoma multiforme(112;0.0223)		TGCCTCAGGGCCCCTACACGG	0.682000													8	168					3.09899e-07	3.37195e-07	0.004482	1	0
C16orf89	146556	broad.mit.edu	37	16	5112524	5112524	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:5112524G>A	uc010bud.2	-	2	462	c.374C>T	c.(373-375)CCG>CTG	p.P125L	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Missense_Mutation_p.P125L	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	87						extracellular region				ovary(1)|skin(1)	2						CAGGCTCAGCGGCTGCAGCAG	0.562000													12	286					0	0	0.020292	0	0
SLC6A2	6530	broad.mit.edu	37	16	55703580	55703580	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:55703580C>T	uc002eif.2	+	3	489	c.378C>T	c.(376-378)ACC>ACT	p.T126T	SLC6A2_uc010ccd.2_Silent_p.T126T|SLC6A2_uc002eig.2_Silent_p.T126T|SLC6A2_uc002eih.2_Silent_p.T126T|SLC6A2_uc002eii.2_5'Flank	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	126					synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	GGGCTGCCACCGTTTGGAAAA	0.537000													5	224					0	0	0.001168	0	0
AGRP	181	broad.mit.edu	37	16	67516584	67516584	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:67516584G>A	uc002etg.1	-	4	654	c.354C>T	c.(352-354)TAC>TAT	p.Y118Y	ATP6V0D1_uc002ete.1_5'Flank|ATP6V0D1_uc010vjo.1_5'Flank	NM_001138	NP_001129	O00253	AGRP_HUMAN	agouti related protein homolog isoform 1	118	Agouti.				hormone-mediated signaling pathway|neuropeptide signaling pathway|regulation of feeding behavior	extracellular space|Golgi lumen	neuropeptide hormone activity				0		Acute lymphoblastic leukemia(13;0.00263)|all_hematologic(13;0.0274)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0717)|Epithelial(162;0.16)		GCTTGCGGCAGTAGCAGAAGG	0.597000													4	336					0	0	0.009096	0	0
HSD17B2	3294	broad.mit.edu	37	16	82104639	82104639	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:82104639G>A	uc002fgv.2	+	3	743	c.571G>A	c.(571-573)GTG>ATG	p.V191M		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	191					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	ATGCATGGCCGTGAACTTCTT	0.493000													4	365					0	0	0.009096	0	0
ADAD2	161931	broad.mit.edu	37	16	84228111	84228111	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:84228111C>T	uc002fhr.2	+	2	596	c.482C>T	c.(481-483)GCG>GTG	p.A161V	ADAD2_uc002fhq.2_Missense_Mutation_p.A233V|uc002fhs.1_Silent_p.S84S	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	161	DRBM.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						GCGGGCACTGCGAATAGCAAG	0.652000													6	65					0	0	0.006214	0	0
TP53	7157	broad.mit.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:7578263G>A	uc002gim.2	-	6	780	c.586C>T	c.(586-588)CGA>TGA	p.R196*	TP53_uc002gig.1_Nonsense_Mutation_p.R196*|TP53_uc002gih.2_Nonsense_Mutation_p.R196*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.R64*|TP53_uc010cng.1_Nonsense_Mutation_p.R64*|TP53_uc002gii.1_Nonsense_Mutation_p.R64*|TP53_uc010cnh.1_Nonsense_Mutation_p.R196*|TP53_uc010cni.1_Nonsense_Mutation_p.R196*|TP53_uc002gij.2_Nonsense_Mutation_p.R196*|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Nonsense_Mutation_p.R103*|TP53_uc002gio.2_Nonsense_Mutation_p.R64*|TP53_uc010vug.1_Nonsense_Mutation_p.R157*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	196	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> S (in a sporadic cancer; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R196*(125)|p.R196P(12)|p.0?(7)|p.R196R(5)|p.R196fs*51(4)|p.A189_V197delAPPQHLIRV(4)|p.R196Q(3)|p.K164_P219del(1)|p.R196L(1)|p.I195fs*50(1)|p.P191fs*6(1)|p.I195_G199delIRVEG(1)|p.R64*(1)|p.I195fs*12(1)|p.R103*(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCTTCCACTCGGATAAGATGC	0.552000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			16	153					0	0	0.004990	0	0
CCDC42	146849	broad.mit.edu	37	17	8647479	8647479	+	Missense_Mutation	SNP	G	A	A	rs143164438		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:8647479G>A	uc002gln.2	-	2	334	c.107C>T	c.(106-108)GCG>GTG	p.A36V	CCDC42_uc002glo.2_Missense_Mutation_p.A36V	NM_144681	NP_653282	Q96M95	CCD42_HUMAN	coiled-coil domain containing 42 isoform 1	36										ovary(1)	1						GGACTCCGACGCCCCCTCAAC	0.547000													4	202					0	0	0.009096	0	0
KRT40	125115	broad.mit.edu	37	17	39137358	39137358	+	Nonsense_Mutation	SNP	C	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:39137358C>A	uc010cxh.1	-	6	894	c.733G>T	c.(733-735)GAG>TAG	p.E245*	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	245	Rod.|Linker 12.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				GTGTCCAGCTCCACACTGAGG	0.522000													49	376					7.05377e-20	8.00698e-20	0.014410	1	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261731	39261731	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:39261731G>C	uc010wfp.1	+	1	91	c.91G>C	c.(91-93)GAG>CAG	p.E31Q		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	31	2.|29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament					0						CAGCTGCTGTGAGACCACCTG	0.637000													4	211					0	0	0.008291	0	0
GHDC	84514	broad.mit.edu	37	17	40341794	40341794	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:40341794A>G	uc002hzd.2	-	9	2004	c.1520T>C	c.(1519-1521)TTC>TCC	p.F507S	GHDC_uc002hzg.1_Missense_Mutation_p.F507S|GHDC_uc010wgg.1_Missense_Mutation_p.F468S|GHDC_uc002hze.3_3'UTR|GHDC_uc002hzf.3_Missense_Mutation_p.F507S	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	507						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		CGCAGGGGGGAAGGGGGAGGA	0.716000													3	37					0	0	0.014758	0	0
GPRC5C	55890	broad.mit.edu	37	17	72443066	72443066	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:72443066C>T	uc002jks.2	+	3	1264	c.1225C>T	c.(1225-1227)CGG>TGG	p.R409W	GPRC5C_uc002jkp.2_Missense_Mutation_p.R454W|GPRC5C_uc002jkq.2_3'UTR|GPRC5C_uc002jkr.2_Missense_Mutation_p.R421W|GPRC5C_uc002jkt.2_Missense_Mutation_p.R409W|GPRC5C_uc002jku.2_Missense_Mutation_p.R164W	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	409	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						CTCGACCCTGCGGGCTGAAGA	0.612000													4	306					0	0	0.014758	0	0
ITGB4	3691	broad.mit.edu	37	17	73728266	73728266	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:73728266G>T	uc002jpg.2	+	12	1587	c.1400G>T	c.(1399-1401)CGC>CTC	p.R467L	ITGB4_uc002jph.2_Missense_Mutation_p.R467L|ITGB4_uc010dgo.2_Missense_Mutation_p.R467L|ITGB4_uc002jpi.3_Missense_Mutation_p.R467L|ITGB4_uc010dgp.1_Missense_Mutation_p.R467L|ITGB4_uc002jpj.2_Missense_Mutation_p.R467L|ITGB4_uc010wsh.1_Missense_Mutation_p.R22L	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	467	I.|Extracellular (Potential).|Cysteine-rich tandem repeats.				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CGGTCAGCTCGCTGCAGCTTC	0.637000													9	294					1.08611e-07	1.19415e-07	0.010729	1	0
DNAH17	8632	broad.mit.edu	37	17	76456045	76456045	+	Silent	SNP	C	A	A	rs111508302		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:76456045C>A	uc010dhp.1	-	5	696	c.474G>T	c.(472-474)CCG>CCT	p.P158P	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CCACAGCATCCGGCGGGGACC	0.607000													4	136					0.00909568	0.00959846	0.009096	1	0
ADCYAP1	116	broad.mit.edu	37	18	909532	909532	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr18:909532C>T	uc010dkg.2	+	5	546	c.427C>T	c.(427-429)CGC>TGC	p.R143C	ADCYAP1_uc010dkh.2_Missense_Mutation_p.R143C	NM_001099733	NP_001093203	P18509	PACA_HUMAN	adenylate cyclase activating polypeptide	143					activation of adenylate cyclase activity|cell-cell signaling|female pregnancy|nerve growth factor receptor signaling pathway|regulation of G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|peptide hormone receptor binding				0						CAGCTACAGCCGCTACCGGAA	0.577000													15	500					0	0	0.008871	0	0
FAM59A	64762	broad.mit.edu	37	18	29867104	29867104	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr18:29867104G>A	uc002kxl.2	-	4	1512	c.1456C>T	c.(1456-1458)CGA>TGA	p.R486*	FAM59A_uc002kxk.1_Nonsense_Mutation_p.R486*	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	486										ovary(1)|skin(1)	2						CATTTGGATCGGACAGAACCT	0.552000													15	403					0	0	0.006122	0	0
SLC14A2	8170	broad.mit.edu	37	18	43205790	43205790	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr18:43205790T>C	uc010dnj.2	+	4	614	c.293T>C	c.(292-294)CTC>CCC	p.L98P	SLC14A2_uc002lbb.2_Missense_Mutation_p.L98P|SLC14A2_uc002lbe.2_Missense_Mutation_p.L98P	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	98						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GTGGGCTACCTCACGGGCGAC	0.562000													3	79					0	0	0.014758	0	0
TSHZ1	10194	broad.mit.edu	37	18	72997831	72997831	+	Missense_Mutation	SNP	A	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr18:72997831A>C	uc002lly.2	+	2	897	c.334A>C	c.(334-336)ACC>CCC	p.T112P		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	157	Ser-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		ctccgcccccacccccacacc	0.244000													9	53					0	0	0.010504	0	0
ZNF57	126295	broad.mit.edu	37	19	2917807	2917807	+	Missense_Mutation	SNP	A	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:2917807A>C	uc002lwr.2	+	4	1336	c.1188A>C	c.(1186-1188)CAA>CAC	p.Q396H	ZNF57_uc010xha.1_Missense_Mutation_p.Q364H	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	396	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AATGTGAACAATGTGGGAAGG	0.428000													3	254					0	0	0.004482	0	0
GPR108	56927	broad.mit.edu	37	19	6734027	6734027	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:6734027C>T	uc002mfp.2	-	6	584	c.538G>A	c.(538-540)GCA>ACA	p.A180T	GPR108_uc010duv.2_5'Flank|GPR108_uc002mfn.2_5'UTR|GPR108_uc002mfo.3_5'UTR|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	180						integral to membrane					0						TGAATCACTGCGGGTGTTGAC	0.602000											OREG0025092	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	362					0	0	0.014758	0	0
ZNF844	284391	broad.mit.edu	37	19	12187475	12187475	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:12187475C>G	uc002mtb.2	+	4	1683	c.1540C>G	c.(1540-1542)CAT>GAT	p.H514D	ZNF844_uc010dym.1_Missense_Mutation_p.H357D	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCACATCTGCCTCA	0.408000													3	193					0	0	0.009096	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13910666	13910666	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:13910666G>T	uc002mxh.1	+	2	475	c.286G>T	c.(286-288)GCC>TCC	p.A96S		NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	96							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			CGAGCACGATGCCCGGGTGCC	0.632000													12	226					4.84862e-15	5.47424e-15	0.010729	1	0
ZNF93	81931	broad.mit.edu	37	19	20044700	20044700	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:20044700C>T	uc002non.2	+	4	1047	c.936C>T	c.(934-936)CCC>CCT	p.P312P		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	312						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						GAGAGAAGCCCTACGTTTGTG	0.368000													5	177					0	0	0.014758	0	0
ZNF493	284443	broad.mit.edu	37	19	21606712	21606712	+	Silent	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:21606712T>C	uc002npx.2	+	2	1147	c.867T>C	c.(865-867)TCT>TCC	p.S289S	ZNF493_uc002npw.2_Silent_p.S417S|ZNF493_uc002npy.2_Silent_p.S289S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	289	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATAAGGAGTCTTCACACCTTA	0.348000													3	203					0	0	0.001984	0	0
ZNF91	7644	broad.mit.edu	37	19	23544867	23544867	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:23544867T>C	uc002nre.2	-	4	1027	c.914A>G	c.(913-915)CAT>CGT	p.H305R	ZNF91_uc010xrj.1_Missense_Mutation_p.H273R	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	305	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAATGGCTAAAAGC	0.413000													5	468					0	0	0.001168	0	0
LOC100101266	100101266	broad.mit.edu	37	19	24345894	24345894	+	RNA	SNP	C	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:24345894C>A	uc010edb.1	-	1		c.356G>T				NR_003603				Homo sapiens hepatitis A virus cellular receptor 1 pseudogene (LOC100101266), non-coding RNA.												0						ATTTTCATGTCATTGAACCAC	0.453000													8	159					5.18039e-06	5.55042e-06	0.003080	1	0
ZNF780A	284323	broad.mit.edu	37	19	40580552	40580552	+	Missense_Mutation	SNP	T	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:40580552T>G	uc002omy.2	-	6	2022	c.1797A>C	c.(1795-1797)CAA>CAC	p.Q599H	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.Q599H|ZNF780A_uc010xvh.1_Missense_Mutation_p.Q600H	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	599	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GTCGAATAAGTTGCATATGAA	0.403000													5	564					0	0	0.001984	0	0
PRX	57716	broad.mit.edu	37	19	40899953	40899953	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:40899953G>A	uc002onr.2	-	7	4575	c.4306C>T	c.(4306-4308)CGG>TGG	p.R1436W	PRX_uc002onq.2_Missense_Mutation_p.R1297W|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1436					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGGGCAGCCGCACCCGCAAT	0.662000													4	206					0	0	0.009096	0	0
CEACAM3	1084	broad.mit.edu	37	19	42301744	42301744	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:42301744C>T	uc002orn.1	+	2	364	c.288C>T	c.(286-288)AGC>AGT	p.S96S	CEACAM3_uc010eia.1_Silent_p.S96S|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	96	Ig-like V-type.|Extracellular (Potential).					integral to membrane				skin(1)	1						CCGCATACAGCGGTCGAGAGA	0.463000													6	774					0	0	0.001984	0	0
GRIK5	2901	broad.mit.edu	37	19	42563599	42563599	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:42563599G>A	uc002osj.1	-	5	624	c.589C>T	c.(589-591)CGG>TGG	p.R197W	GRIK5_uc010eib.1_Missense_Mutation_p.R116W	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	197	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	GTGGGGTCCCGGCTGTCGTCC	0.602000													23	300					0	0	0.007291	0	0
PSG9	5678	broad.mit.edu	37	19	43763169	43763169	+	Silent	SNP	G	A	A	rs2355449	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:43763169G>A	uc002owd.3	-	4	927	c.828C>T	c.(826-828)AAC>AAT	p.N276N	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Silent_p.N183N|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	276	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GGCTCTGACCGTTTAGCCACC	0.473000													8	863					0	0	0.004482	0	0
C19orf41	126123	broad.mit.edu	37	19	50666024	50666024	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:50666024C>T	uc002prp.1	-	2	366	c.279G>A	c.(277-279)ACG>ACA	p.T93T		NM_152358	NP_689571	Q6UXV1	IZUM2_HUMAN	hypothetical protein LOC126123 precursor	93	Extracellular (Potential).					integral to membrane					0		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00364)|OV - Ovarian serous cystadenocarcinoma(262;0.0052)		TTAAGTGCTGCGTTTGGTTCT	0.562000													19	189					0	0	0.004656	0	0
LILRP2	79166	broad.mit.edu	37	19	55221543	55221543	+	RNA	SNP	T	G	G	rs45452596		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:55221543T>G	uc002qgs.1	+	1		c.1943T>G			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CCTGTGAGGGTCTCCCACGGG	0.662000													3	159					0	0	0.003080	0	0
U2AF2	11338	broad.mit.edu	37	19	56185404	56185404	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:56185404C>T	uc002qlu.2	+	12	2453	c.1398C>T	c.(1396-1398)CCC>CCT	p.P466P	U2AF2_uc002qlt.2_Silent_p.P462P|EPN1_uc002qlw.2_5'Flank|EPN1_uc002qlv.2_5'Flank|EPN1_uc010etd.2_5'Flank|EPN1_uc002qlx.2_5'Flank	NM_007279	NP_009210	P26368	U2AF2_HUMAN	U2 (RNU2) small nuclear RNA auxiliary factor 2	466	RRM 3.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	nucleoplasm|spliceosomal complex	enzyme binding|nucleotide binding|RNA binding			ovary(1)	1		Colorectal(82;0.00244)|Ovarian(87;0.133)	BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		ACTGTGACCCCGACTCTTATC	0.627000													4	378					0	0	0.009096	0	0
APOB	338	broad.mit.edu	37	2	21233909	21233909	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:21233909T>C	uc002red.2	-	26	5959	c.5831A>G	c.(5830-5832)CAT>CGT	p.H1944R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1944					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTGTAATCATGAGAGAAAGT	0.468000													16	485					0	0	0.004007	0	0
XDH	7498	broad.mit.edu	37	2	31621487	31621487	+	Missense_Mutation	SNP	G	A	A	rs145064943	by1000genomes	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:31621487G>A	uc002rnv.1	-	5	464	c.385C>T	c.(385-387)CGG>TGG	p.R129W		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	129					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GGCTGATTCCGGAGCAGTGTG	0.552000													4	492					0	0	0.001168	0	0
SPTBN1	6711	broad.mit.edu	37	2	54853294	54853294	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:54853294C>T	uc002rxu.2	+	12	1816	c.1567C>T	c.(1567-1569)CGG>TGG	p.R523W	SPTBN1_uc002rxv.1_Missense_Mutation_p.R523W|SPTBN1_uc002rxx.2_Missense_Mutation_p.R510W	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	523	Spectrin 3.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CCGGAGACAGCGGCTCGAGAT	0.522000													4	282					0	0	0.014758	0	0
ACTG2	72	broad.mit.edu	37	2	74136258	74136258	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:74136258G>A	uc002sjw.2	+	5	565	c.443G>A	c.(442-444)CGC>CAC	p.R148H	ACTG2_uc010fey.2_Missense_Mutation_p.R148H|ACTG2_uc010yrn.1_Missense_Mutation_p.R105H	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	148					muscle contraction	cytoskeleton|cytosol	ATP binding				0						GCCTCTGGCCGCACGACAGGT	0.478000													4	291					0	0	0.001168	0	0
REG3A	5068	broad.mit.edu	37	2	79384703	79384703	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:79384703C>T	uc002sod.1	-	4	710	c.455G>A	c.(454-456)AGC>AAC	p.S152N	REG3A_uc002soe.1_Missense_Mutation_p.S152N|REG3A_uc002sof.1_Missense_Mutation_p.S152N	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	152	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						CTTACCTGTGCTTCTCGACAG	0.512000													18	400					0	0	0.007413	0	0
TMEM131	23505	broad.mit.edu	37	2	98430514	98430515	+	Missense_Mutation	DNP	GC	TA	TA			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:98430514_98430515GC>TA	uc002syh.3	-	15	1765_1766	c.1536_1537GC>TA	c.(1534-1539)ATGCAC>ATTAAC	p.512_513MH>IN		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	512_513						integral to membrane				ovary(4)|central_nervous_system(2)	6						TTATCAATGTGCATGGATGATG	0.347000													4	38					0	0	0.004672	0	0
THSD7B	80731	broad.mit.edu	37	2	138030171	138030171	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:138030171T>A	uc002tva.1	+	10	2242	c.2242T>A	c.(2242-2244)TGC>AGC	p.C748S	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.C638S	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGGCCAGGAATGCCCAGATAC	0.393000													4	72					0	0	0.014758	0	0
LRP1B	53353	broad.mit.edu	37	2	141665535	141665535	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:141665535G>A	uc002tvj.1	-	22	4403	c.3431C>T	c.(3430-3432)GCT>GTT	p.A1144V	LRP1B_uc010fnl.1_Missense_Mutation_p.A326V	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1144	Extracellular (Potential).|LDL-receptor class A 10.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGTGTCATTAGCACAAGGATG	0.463000										TSP Lung(27;0.18)			4	329					0	0	0.014758	0	0
LRP2	4036	broad.mit.edu	37	2	170177381	170177381	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:170177381C>T	uc002ues.2	-	2	306	c.93G>A	c.(91-93)GCG>GCA	p.A31A	LRP2_uc010zdf.1_Silent_p.A31A	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	31	LDL-receptor class A 1.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGCGAAAATGCGCACTGTCAC	0.368000													9	263					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179404315	179404315	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:179404315G>A	uc010zfg.1	-	301	90997	c.90773C>T	c.(90772-90774)GCT>GTT	p.A30258V	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A23953V|TTN_uc010zfi.1_Missense_Mutation_p.A23886V|TTN_uc010zfj.1_Missense_Mutation_p.A23761V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31185							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAGATGTCAGCACCACCATC	0.522000													4	509					0	0	0.014758	0	0
TTN	7273	broad.mit.edu	37	2	179604620	179604620	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:179604620G>A	uc010zfh.1	-	46	13051	c.12827C>T	c.(12826-12828)TCG>TTG	p.S4276L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.S4209L|TTN_uc010zfj.1_Missense_Mutation_p.S4084L|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGACTTTGCCGAAGTAACAAG	0.413000													4	332					0	0	0.009096	0	0
AOX1	316	broad.mit.edu	37	2	201534367	201534367	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:201534367G>A	uc002uvx.2	+	34	3969	c.3868G>A	c.(3868-3870)GCA>ACA	p.A1290T	AOX1_uc010zhf.1_Missense_Mutation_p.A846T|AOX1_uc010fsu.2_Missense_Mutation_p.A656T	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	1290					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	AGTGAGTGCAGCACGACAGGA	0.517000													6	715					0	0	0.001168	0	0
FN1	2335	broad.mit.edu	37	2	216271856	216271856	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:216271856G>A	uc002vfa.2	-	18	2973	c.2707C>T	c.(2707-2709)CGC>TGC	p.R903C	FN1_uc002vfb.2_Missense_Mutation_p.R903C|FN1_uc002vfc.2_Missense_Mutation_p.R903C|FN1_uc002vfd.2_Missense_Mutation_p.R903C|FN1_uc002vfe.2_Missense_Mutation_p.R903C|FN1_uc002vff.2_Missense_Mutation_p.R903C|FN1_uc002vfg.2_Missense_Mutation_p.R903C|FN1_uc002vfh.2_Missense_Mutation_p.R903C|FN1_uc002vfi.2_Missense_Mutation_p.R903C|FN1_uc002vfj.2_Missense_Mutation_p.R903C	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	903					acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTACCTGAGCGTGGGGTGCCA	0.408000													16	287					0	0	0.008871	0	0
CCDC108	255101	broad.mit.edu	37	2	219890812	219890812	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:219890812C>T	uc002vjl.1	-	14	2365	c.2281G>A	c.(2281-2283)GCA>ACA	p.A761T		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	761						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGCCTCGTGCCCGCACCGTC	0.597000													7	191					0	0	0.003080	0	0
COL4A4	1286	broad.mit.edu	37	2	227979396	227979396	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:227979396T>C	uc010zlt.1	-	8	1160	c.506A>G	c.(505-507)AAG>AGG	p.K169R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	169	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TTTTTCTCCCTTTTCCCCAGG	0.299000													3	328					0	0	0.014758	0	0
FRG1B	284802	broad.mit.edu	37	20	29625971	29625971	+	Missense_Mutation	SNP	C	A	A	rs145033899		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr20:29625971C>A	uc010ztl.1	+	2	157	c.125C>A	c.(124-126)CCA>CAA	p.P42Q	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						CAATGGGAACCAGTCTTTCAA	0.328000													7	362					1.5842e-08	1.76022e-08	0.016723	1	0
C20orf4	25980	broad.mit.edu	37	20	34832731	34832731	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr20:34832731G>A	uc002xfc.1	+	3	963	c.870G>A	c.(868-870)AAG>AAA	p.K290K	C20orf4_uc002xfd.1_Silent_p.K290K|C20orf4_uc002xfe.1_Silent_p.K290K	NM_015511	NP_056326	Q9Y312	CT004_HUMAN	hypothetical protein LOC25980	290											0	Breast(12;0.0162)	Myeloproliferative disorder(115;0.0393)				CCATGATGAAGCACCACACCC	0.527000													4	297					0	0	0.014758	0	0
NCOA3	8202	broad.mit.edu	37	20	46279860	46279860	+	Silent	SNP	G	A	A	rs151060280	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr20:46279860G>A	uc002xtk.2	+	20	3991	c.3786G>A	c.(3784-3786)CAG>CAA	p.Q1262Q	NCOA3_uc010ght.1_Silent_p.Q1253Q|NCOA3_uc002xtl.2_Silent_p.Q1258Q|NCOA3_uc002xtm.2_Silent_p.Q1257Q|NCOA3_uc002xtn.2_Silent_p.Q1261Q|NCOA3_uc010zyc.1_Silent_p.Q1057Q	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1262	Poly-Gln.|Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						agcagcagcagcagcaacagc	0.308000													5	108					0	0	0.014758	0	0
UBASH3A	53347	broad.mit.edu	37	21	43838614	43838614	+	Silent	SNP	C	T	T	rs147873921		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr21:43838614C>T	uc002zbe.2	+	7	978	c.942C>T	c.(940-942)AGC>AGT	p.S314S	UBASH3A_uc002zbf.2_Silent_p.S276S|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Silent_p.S276S	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	314	SH3.					cytosol|nucleus				ovary(3)	3						ACGAAGCCAGCGAGGGCTGGG	0.592000													9	175					0	0	0.006214	0	0
PCNT	5116	broad.mit.edu	37	21	47754527	47754527	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr21:47754527A>G	uc002zji.3	+	3	591	c.484A>G	c.(484-486)AGT>GGT	p.S162G	PCNT_uc002zjj.2_Missense_Mutation_p.S44G|PCNT_uc010gqk.1_RNA	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	162					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GTTCACAGTCAGTGACCACCC	0.552000													7	304					0	0	0.003080	0	0
GGT3P	2679	broad.mit.edu	37	22	18778601	18778601	+	RNA	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr22:18778601C>T	uc011ago.1	-	2		c.219G>A			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						GCTTGGCATCCGCGGCCACGG	0.552000													4	36					0	0	0.014758	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119859	38119859	+	Silent	SNP	C	T	T	rs66505048		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr22:38119859C>T	uc003atr.2	+	7	1567	c.1296C>T	c.(1294-1296)TGC>TGT	p.C432C	TRIOBP_uc003atu.2_Silent_p.C260C|TRIOBP_uc003atq.1_Silent_p.C432C|TRIOBP_uc003ats.1_Silent_p.C260C	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	432					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAACATCCTGCGCCCAGCGGG	0.582000													5	293					0	0	0.013537	0	0
EFCAB6	64800	broad.mit.edu	37	22	44083357	44083357	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr22:44083357C>T	uc003bdy.1	-	11	1351	c.1136G>A	c.(1135-1137)AGA>AAA	p.R379K	EFCAB6_uc003bdz.1_Missense_Mutation_p.R227K|EFCAB6_uc010gzi.1_Missense_Mutation_p.R227K|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Missense_Mutation_p.R376K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ATACCTATTTCTTTTTGTCAG	0.308000													13	102					0	0	0.020292	0	0
RPL32	6161	broad.mit.edu	37	3	12881673	12881673	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:12881673G>A	uc003bxl.2	-	1	277	c.64C>T	c.(64-66)CGG>TGG	p.R22W	RPL32_uc003bxm.2_Missense_Mutation_p.R22W|RPL32_uc003bxn.2_Missense_Mutation_p.R22W	NM_001007074	NP_001007075	P62910	RL32_HUMAN	ribosomal protein L32	22					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	protein binding|structural constituent of ribosome			ovary(1)	1						GACTGGTGCCGGATGAACTTC	0.502000													5	752					0	0	0.014758	0	0
MAP4	4134	broad.mit.edu	37	3	47958144	47958144	+	Silent	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:47958144A>G	uc003csb.2	-	7	1699	c.1173T>C	c.(1171-1173)GCT>GCC	p.A391A	MAP4_uc003csc.3_Silent_p.A391A|MAP4_uc011bbf.1_Silent_p.A368A|MAP4_uc003csf.3_Silent_p.A408A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	391	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGAGCCAAGTCCA	0.443000													5	566					0	0	0.014758	0	0
MAP4	4134	broad.mit.edu	37	3	47958147	47958147	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:47958147C>T	uc003csb.2	-	7	1696	c.1170G>A	c.(1168-1170)TTG>TTA	p.L390L	MAP4_uc003csc.3_Silent_p.L390L|MAP4_uc011bbf.1_Silent_p.L367L|MAP4_uc003csf.3_Silent_p.L407L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	390	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGAGCCAAGTCCATTT	0.448000													5	569					0	0	0.014758	0	0
UBA7	7318	broad.mit.edu	37	3	49845258	49845258	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:49845258G>A	uc003cxr.2	-	21	2797	c.2626C>T	c.(2626-2628)CGG>TGG	p.R876W		NM_003335	NP_003326	P41226	UBA7_HUMAN	ubiquitin-like modifier activating enzyme 7	876					ISG15-protein conjugation|negative regulation of type I interferon production	cytosol	ATP binding|ISG15 activating enzyme activity|ligase activity			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(193;3.58e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		CTACGAGGCCGTGGCCCACTC	0.572000													4	150					0	0	0.009096	0	0
PBRM1	55193	broad.mit.edu	37	3	52649473	52649473	+	Splice_Site	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:52649473C>T	uc003des.2	-	15	1831	c.1819_splice	c.e15-1	p.V607_splice	PBRM1_uc003dex.2_Splice_Site|PBRM1_uc003deq.2_Splice_Site_p.V607_splice|PBRM1_uc003der.2_Splice_Site_p.V575_splice|PBRM1_uc003det.2_Splice_Site_p.V622_splice|PBRM1_uc003deu.2_Splice_Site_p.V622_splice|PBRM1_uc003dev.2_Splice_Site|PBRM1_uc003dew.2_Splice_Site_p.V607_splice|PBRM1_uc010hmk.1_Splice_Site_p.V607_splice|PBRM1_uc003dey.2_Splice_Site_p.V607_splice|PBRM1_uc003dez.1_Splice_Site_p.V607_splice|PBRM1_uc003dfb.1_Splice_Site_p.V520_splice|PBRM1_uc003dfc.2_Splice_Site	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4						chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		CATTATAAACCTACATTCCAA	0.333000			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								17	171					0	0	0.006122	0	0
SLC12A8	84561	broad.mit.edu	37	3	124909229	124909229	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:124909229C>T	uc003ehv.3	-	3	299	c.188G>A	c.(187-189)GGC>GAC	p.G63D	SLC12A8_uc003ehw.3_Missense_Mutation_p.G92D|SLC12A8_uc010hrz.1_5'UTR	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	63					potassium ion transport	integral to membrane	symporter activity				0						CACCAGCCAGCCAGTCCTCAG	0.562000													4	340					0	0	0.001984	0	0
MUC20	200958	broad.mit.edu	37	3	195453211	195453211	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:195453211C>T	uc010hzo.2	+	3	1350	c.1224C>T	c.(1222-1224)GCC>GCT	p.A408A	MUC20_uc010hzp.2_Silent_p.A373A|MUC20_uc011bte.1_RNA	NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	579	Involved in oligomerization.				protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		CCTCGGAAGCCGCCCTCAAGA	0.602000													7	274					0	0	0.001984	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6114531	6114531	+	Missense_Mutation	SNP	G	A	A	rs148302835	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:6114531G>A	uc003giu.3	-	2	323	c.47C>T	c.(46-48)ACG>ATG	p.T16M	JAKMIP1_uc010idb.1_Missense_Mutation_p.T16M|JAKMIP1_uc010idc.1_Missense_Mutation_p.T16M|JAKMIP1_uc010idd.1_Missense_Mutation_p.T16M|JAKMIP1_uc011bwc.1_Missense_Mutation_p.T16M|JAKMIP1_uc003giv.3_Missense_Mutation_p.T16M|JAKMIP1_uc010ide.2_Missense_Mutation_p.T16M	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	16	Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CACCGCGTCCGTCTCCATCTC	0.607000													19	220					0	0	0.006122	0	0
DCUN1D4	23142	broad.mit.edu	37	4	52777312	52777312	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:52777312T>C	uc003gze.2	+	9	825	c.692T>C	c.(691-693)CTT>CCT	p.L231P	DCUN1D4_uc003gzf.2_Intron|DCUN1D4_uc011bzn.1_Missense_Mutation_p.L171P|DCUN1D4_uc003gzg.2_RNA|DCUN1D4_uc003gzh.2_Intron|DCUN1D4_uc011bzo.1_Missense_Mutation_p.L275P	NM_001040402	NP_001035492	Q92564	DCNL4_HUMAN	DCN1, defective in cullin neddylation 1, domain	231	DCUN1.									ovary(2)	2			GBM - Glioblastoma multiforme(4;1.93e-11)|LUSC - Lung squamous cell carcinoma(32;0.00654)			ATCTGGCCCCTTTTTCCAGTT	0.383000													4	383					0	0	0.014758	0	0
UGT2B28	54490	broad.mit.edu	37	4	70152481	70152481	+	Silent	SNP	A	G	G	rs141618560		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:70152481A>G	uc003hej.2	+	3	884	c.882A>G	c.(880-882)GAA>GAG	p.E294E	UGT2B28_uc010ihr.2_Silent_p.E294E	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	294					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	AAATGGAGGAATTTGTACAGA	0.393000													5	277					0	0	0.013537	0	0
NDST3	9348	broad.mit.edu	37	4	119161830	119161830	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:119161830T>C	uc003ibx.2	+	11	2673	c.2270T>C	c.(2269-2271)GTT>GCT	p.V757A		NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	757	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						AGATGGCTTGTTTATTTCCCC	0.458000													13	193					0	0	0.003163	0	0
KIAA1109	84162	broad.mit.edu	37	4	123168391	123168391	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:123168391G>A	uc003ieh.2	+	33	5436	c.5391G>A	c.(5389-5391)AAG>AAA	p.K1797K	KIAA1109_uc003iek.2_Silent_p.K416K	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1797					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ATGCCACAAAGATGCAGCCTC	0.393000													8	249					0	0	0.004482	0	0
OTUD4	54726	broad.mit.edu	37	4	146058966	146058966	+	Silent	SNP	G	A	A	rs146975610	by1000genomes	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:146058966G>A	uc003ika.3	-	21	2904	c.2766C>T	c.(2764-2766)AGC>AGT	p.S922S	OTUD4_uc003ijz.3_Silent_p.S921S	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	986							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					TTTCTTTCAGGCTTTGAATGG	0.453000													5	561					0	0	0.004482	0	0
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:146059041A>G	uc003ika.3	-	21	2829	c.2691T>C	c.(2689-2691)CAT>CAC	p.H897H	OTUD4_uc003ijz.3_Silent_p.H896H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	961							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GAGTGGGAGGATGAGCCTTTC	0.478000													5	512					0	0	0.001984	0	0
KIAA0947	23379	broad.mit.edu	37	5	5469027	5469027	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:5469027A>G	uc003jdm.3	+	15	6370	c.6148A>G	c.(6148-6150)ATG>GTG	p.M2050V		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	2050										ovary(1)|central_nervous_system(1)	2						TAATAAAGCAATGCAGTTAGT	0.363000													17	282					0	0	0.006122	0	0
ZFR	51663	broad.mit.edu	37	5	32407029	32407029	+	Silent	SNP	A	T	T	rs139769264		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:32407029A>T	uc003jhr.1	-	6	962	c.882T>A	c.(880-882)GCT>GCA	p.A294A	ZFR_uc010iun.1_Silent_p.A294A	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	294	Ala-rich.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		cagcagcagcagctgctgctg	0.294000													3	70					0	0	0.004672	0	0
C7	730	broad.mit.edu	37	5	40947725	40947725	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:40947725G>A	uc003jmh.2	+	8	874	c.760G>A	c.(760-762)GAG>AAG	p.E254K	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	254	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GCTGGTTGTTGAGAACACTGT	0.408000													4	84					0	0	0.009096	0	0
LOC441089	441089	broad.mit.edu	37	5	79647590	79647590	+	RNA	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:79647590C>T	uc010jaj.1	-	1		c.196G>A				NR_003665				Homo sapiens CRSP8 pseudogene (LOC441089), non-coding RNA.												0						CCCGGTTGACCGAATGTAAGT	0.547000													17	323					0	0	0.018920	0	0
CDC23	8697	broad.mit.edu	37	5	137548883	137548883	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:137548883G>A	uc003lcl.2	-	1	150	c.119C>T	c.(118-120)GCG>GTG	p.A40V	CDC23_uc003lcm.1_Missense_Mutation_p.A40V	NM_004661	NP_004652	Q9UJX2	CDC23_HUMAN	cell division cycle protein 23	40					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1 phase of mitotic cell cycle|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase plate congression|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of exit from mitosis	anaphase-promoting complex|cytosol|nucleoplasm	binding|ubiquitin-protein ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GGTAAGGCCCGCAATAAGCAG	0.572000													5	467					0	0	0.001984	0	0
KDM3B	51780	broad.mit.edu	37	5	137721784	137721784	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:137721784G>A	uc003lcy.1	+	7	1054	c.854G>A	c.(853-855)CGG>CAG	p.R285Q	KDM3B_uc010jew.1_5'UTR|KDM3B_uc011cys.1_5'Flank	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	285					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						AAAGATGGCCGGAGGAGGAAA	0.438000													4	229					0	0	0.009096	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579354	140579354	+	Missense_Mutation	SNP	A	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:140579354A>T	uc003liy.2	+	1	7	c.7A>T	c.(7-9)AAC>TAC	p.N3Y	PCDHB11_uc011daj.1_5'UTR	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	3					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding	p.N3I(1)|p.N3N(1)		skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACTATGGAGAACCAAGGGAC	0.498000													4	182					0	0	0.009096	0	0
FAM114A2	10827	broad.mit.edu	37	5	153372650	153372650	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:153372650G>A	uc003lvb.2	-	14	1992	c.1404C>T	c.(1402-1404)TAC>TAT	p.Y468Y	FAM114A2_uc003lvc.2_Silent_p.Y468Y|FAM114A2_uc003lvd.2_Silent_p.Y468Y|FAM114A2_uc003lve.2_Silent_p.Y284Y|FAM114A2_uc011dda.1_Silent_p.Y398Y	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	468							purine nucleotide binding				0						CGTCCTGGATGTAGGAGGCAC	0.413000													4	181					0	0	0.014758	0	0
FBXW11	23291	broad.mit.edu	37	5	171326961	171326961	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:171326961G>A	uc003mbm.1	-	4	888	c.517C>T	c.(517-519)CGC>TGC	p.R173C	FBXW11_uc011dey.1_Missense_Mutation_p.R141C|FBXW11_uc003mbl.1_Missense_Mutation_p.R160C|FBXW11_uc003mbn.1_Missense_Mutation_p.R139C	NM_012300	NP_036432	Q9UKB1	FBW1B_HUMAN	F-box and WD repeat domain containing 11 isoform	173					cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of circadian rhythm|positive regulation of proteolysis|positive regulation of transcription, DNA-dependent|protein dephosphorylation|protein destabilization|protein polyubiquitination|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	centrosome|cytosol|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity	p.N260_I262(1)		ovary(1)|breast(1)	2	Renal(175;0.000159)|Lung NSC(126;0.00384)|all_lung(126;0.00659)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGATCAGTGCGTACCATTCGT	0.448000													5	836					0	0	0.001168	0	0
STK10	6793	broad.mit.edu	37	5	171523525	171523525	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:171523525G>A	uc003mbo.1	-	8	1210	c.910C>T	c.(910-912)CGG>TGG	p.R304W		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	304							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ACCAGCTCCCGCAGAGCCTTG	0.622000													5	486					0	0	0.014758	0	0
ATXN1	6310	broad.mit.edu	37	6	16327903	16327903	+	Missense_Mutation	SNP	C	A	A	rs3817753		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:16327903C>A	uc003nbt.2	-	8	1610	c.639G>T	c.(637-639)CAG>CAT	p.Q213H	ATXN1_uc010jpi.2_Missense_Mutation_p.Q213H|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	213	Poly-Gln.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				gctgctgctgctgctgatgct	0.378000													9	14					1.76689e-08	1.95288e-08	0.006214	1	0
ITPR3	3710	broad.mit.edu	37	6	33639927	33639927	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:33639927G>A	uc011drk.1	+	22	3069	c.2850G>A	c.(2848-2850)CCG>CCA	p.P950P		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	950	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						CTGCTGAGCCGCTGGACAGAA	0.597000													4	256					0	0	0.014758	0	0
GCM1	8521	broad.mit.edu	37	6	52993190	52993190	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:52993190G>A	uc003pbp.2	-	6	1334	c.1125C>T	c.(1123-1125)TAC>TAT	p.Y375Y		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	375						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					GAGACTGGACGTAGCTGTTAA	0.483000													5	522					0	0	0.001168	0	0
COL12A1	1303	broad.mit.edu	37	6	75887411	75887411	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:75887411G>A	uc003phs.2	-	12	2571	c.2405C>T	c.(2404-2406)ACT>ATT	p.T802I	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_Missense_Mutation_p.T460I	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	802	Fibronectin type-III 4.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AGTTAATGGAGTACCAGGTCC	0.428000													4	621					0	0	0.009096	0	0
SUN1	23353	broad.mit.edu	37	7	893090	893090	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:893090G>A	uc011jvp.1	+	11	1177	c.1098G>A	c.(1096-1098)GAG>GAA	p.E366E	GET4_uc003sjj.1_RNA|SUN1_uc003sjf.2_Silent_p.E283E|SUN1_uc011jvq.1_Silent_p.E263E|SUN1_uc003sjg.2_Silent_p.E271E|SUN1_uc011jvr.1_Silent_p.E175E|SUN1_uc003sji.2_Silent_p.E204E|SUN1_uc003sjk.2_Silent_p.E5E	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	393	Perinuclear space.|Potential.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						GTGGCGTGGAGCAGCAGGTGG	0.542000													4	356					0	0	0.014758	0	0
COL28A1	340267	broad.mit.edu	37	7	7514292	7514292	+	Silent	SNP	T	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:7514292T>C	uc003src.1	-	15	1359	c.1242A>G	c.(1240-1242)AAA>AAG	p.K414K	COL28A1_uc011jxe.1_Silent_p.K97K|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	414					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CTTCAGAACCTTTTTCACCCT	0.393000													3	338					0	0	0.014758	0	0
MRPS24	64951	broad.mit.edu	37	7	43909090	43909090	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:43909090G>A	uc003tit.1	-	1	56	c.5C>T	c.(4-6)GCG>GTG	p.A2V		NM_032014	NP_114403	Q96EL2	RT24_HUMAN	mitochondrial ribosomal protein S24 precursor	2					translation	mitochondrial large ribosomal subunit|mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						CACGGAGGCCGCCATCTTGGG	0.697000													3	19					0	0	0.004672	0	0
PKD1L1	168507	broad.mit.edu	37	7	47944116	47944116	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:47944116G>A	uc003tny.1	-	12	1790	c.1790C>T	c.(1789-1791)ACG>ATG	p.T597M		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	597	Extracellular (Potential).|PKD 2.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGAGGGGGACGTGAGCCGATT	0.542000													6	210					0	0	0.001984	0	0
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:57187809T>G	uc010kzo.2	-	5	1584	c.1313A>C	c.(1312-1314)AAA>ACA	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	438	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453000													5	354					0	0	0.001168	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130883	75130883	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:75130883G>A	uc011kfy.1	+	6	894	c.758G>A	c.(757-759)CGT>CAT	p.R253H		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	253	Arg-rich.										0						CAGTTAGGCCGTTCCATGAAC	0.592000													7	649					0	0	0.001168	0	0
SPDYE3	441272	broad.mit.edu	37	7	99913460	99913460	+	Silent	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:99913460A>G	uc003uug.1	+	2	363	c.123A>G	c.(121-123)TCA>TCG	p.S41S		NM_001004351	NP_001004351	A6NKU9	SPDE3_HUMAN	speedy homolog E3	418											0						TGAGGGTGTCAGACAAGGTAA	0.522000													6	678					0	0	0.004482	0	0
NUP205	23165	broad.mit.edu	37	7	135282863	135282863	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:135282863C>T	uc003vsw.2	+	15	2213	c.2182C>T	c.(2182-2184)CGG>TGG	p.R728W		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	728					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						TGCTGGACTGCGGCCCCCTGG	0.483000													5	882					0	0	0.001168	0	0
SVOPL	136306	broad.mit.edu	37	7	138341226	138341226	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:138341226C>T	uc011kqh.1	-	6	501	c.501G>A	c.(499-501)ACG>ACA	p.T167T	SVOPL_uc003vue.2_Silent_p.T15T	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	167						integral to membrane	transmembrane transporter activity				0						CTCGGTATTTCGTGGGCAAAA	0.333000													48	417					0	0	0.014410	0	0
TRPV6	55503	broad.mit.edu	37	7	142569526	142569526	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:142569526C>A	uc003wbx.1	-	15	2328	c.2112G>T	c.(2110-2112)AGG>AGT	p.R704S	TRPV6_uc003wbw.1_Missense_Mutation_p.R490S|TRPV6_uc010lou.1_Missense_Mutation_p.R575S	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	704	Interaction with calmodulin.|Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GCAGGTCTCTCCTCAGGGTCC	0.577000													19	299					8.34094e-07	9.02885e-07	0.008871	1	0
CA8	767	broad.mit.edu	37	8	61139438	61139438	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:61139438C>G	uc003xtz.1	-	5	818	c.570G>C	c.(568-570)CAG>CAC	p.Q190H	CA8_uc003xua.1_Missense_Mutation_p.Q190H	NM_004056	NP_004047	P35219	CAH8_HUMAN	carbonic anhydrase VIII	190					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0		all_cancers(86;0.172)|all_epithelial(80;0.0383)|all_lung(136;0.0413)|Lung NSC(129;0.0474)				TTACCTTATACTGAATATCTT	0.229000													8	145					0	0	0.004482	0	0
RIMS2	9699	broad.mit.edu	37	8	104948912	104948912	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:104948912G>A	uc003yls.2	+	11	2084	c.1843G>A	c.(1843-1845)GCT>ACT	p.A615T	RIMS2_uc003ylp.2_Missense_Mutation_p.A837T|RIMS2_uc003ylw.2_Missense_Mutation_p.A629T|RIMS2_uc003ylq.2_Missense_Mutation_p.A629T|RIMS2_uc003ylr.2_Missense_Mutation_p.A676T|RIMS2_uc003ylt.2_Missense_Mutation_p.A222T	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	899	C2 1.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TTGGGATCAAGCTCGTGTTCG	0.373000										HNSCC(12;0.0054)			7	637					0	0	0.004482	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457259	110457259	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:110457259C>A	uc003yne.2	+	38	5265	c.5161C>A	c.(5161-5163)CTT>ATT	p.L1721I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1721	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGCCCAACAGCTTGTGGATGT	0.438000										HNSCC(38;0.096)			83	585					1.43697e-34	1.64002e-34	0.014410	1	0
GSDMC	56169	broad.mit.edu	37	8	130789715	130789715	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:130789715C>T	uc003ysr.2	-	2	1001	c.119G>A	c.(118-120)CGA>CAA	p.R40Q		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	40						mitochondrion				ovary(2)|skin(1)	3						CTTCTTCTTTCGTAATATAAC	0.398000													22	390					0	0	0.014323	0	0
MLLT3	4300	broad.mit.edu	37	9	20414280	20414280	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr9:20414280G>A	uc003zoe.2	-	5	823	c.564C>T	c.(562-564)AGC>AGT	p.S188S	MLLT3_uc011lne.1_Silent_p.S156S|MLLT3_uc011lnf.1_Silent_p.S185S|MLLT3_uc003zof.2_5'UTR	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	188	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		TGGTActactgctgctgctgc	0.174000			T	MLL	ALL								9	290					0	0	0.004482	0	0
NTRK2	4915	broad.mit.edu	37	9	87635240	87635240	+	Silent	SNP	C	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr9:87635240C>A	uc004aoa.1	+	19	3182	c.2244C>A	c.(2242-2244)ACC>ACA	p.T748T	NTRK2_uc004anz.1_Silent_p.T764T	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	748	Protein kinase.|Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						AGATTTTCACCTATGGCAAAC	0.557000										TSP Lung(25;0.17)			18	423					2.37509e-13	2.66722e-13	0.010504	1	0
FAM75C1	441452	broad.mit.edu	37	9	90535707	90535707	+	Silent	SNP	G	A	A	rs143264409	by1000genomes	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr9:90535707G>A	uc010mqi.2	+	4	914	c.885G>A	c.(883-885)TCG>TCA	p.S295S	FAM75C1_uc004apq.3_Silent_p.S278S	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						TCTCCTGGTCGCAGGAGACTA	0.547000													4	279					0	0	0.009096	0	0
SVEP1	79987	broad.mit.edu	37	9	113221270	113221270	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr9:113221270G>A	uc010mtz.2	-	19	3783	c.3446C>T	c.(3445-3447)ACC>ATC	p.T1149I	SVEP1_uc010mua.1_Missense_Mutation_p.T1149I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1149					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AGCGAATGGGGTAGTTCCATA	0.458000													4	367					0	0	0.009096	0	0
FAM9A	171482	broad.mit.edu	37	X	8763195	8763195	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:8763195C>T	uc004csg.2	-	7	866	c.755G>A	c.(754-756)GGA>GAA	p.G252E		NM_174951	NP_777611	Q8IZU1	FAM9A_HUMAN	family with sequence similarity 9, member A	252	Poly-Gly.|Glu-rich.					nucleolus					0		Hepatocellular(5;0.219)				tcctcctcctccttcttctcc	0.060000													3	25					0	0	0.004672	0	0
RS1	6247	broad.mit.edu	37	X	18674869	18674869	+	Missense_Mutation	SNP	C	T	T	rs146477940	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:18674869C>T	uc004cyo.2	-	3	123	c.88G>A	c.(88-90)GAG>AAG	p.E30K		NM_000330	NP_000321	O15537	XLRS1_HUMAN	X-linked juvenile retinoschisis protein	30					cell adhesion|multicellular organismal development|response to stimulus|visual perception	extracellular space				ovary(2)	2	Hepatocellular(33;0.183)					CAGGGGTCCTCGCCTTCATCC	0.512000													27	378					0	0	0.009535	0	0
FAM47C	442444	broad.mit.edu	37	X	37027156	37027156	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:37027156C>G	uc004ddl.1	+	1	687	c.673C>G	c.(673-675)CAG>GAG	p.Q225E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	225										ovary(3)	3						TCTCCGCCCACAGCCTCCCAA	0.647000													6	243					0	0	0.004482	0	0
FAM47C	442444	broad.mit.edu	37	X	37028425	37028425	+	Missense_Mutation	SNP	A	G	G	rs145580328	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:37028425A>G	uc004ddl.1	+	1	1956	c.1942A>G	c.(1942-1944)AAT>GAT	p.N648D		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	648										ovary(3)	3						GGAGCCTCCCAATACTGGAGT	0.642000													8	413					0	0	0.006214	0	0
P2RY4	5030	broad.mit.edu	37	X	69478844	69478844	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:69478844C>T	uc004dxz.1	-	1	811	c.631G>A	c.(631-633)GTG>ATG	p.V211M		NM_002565	NP_002556	P51582	P2RY4_HUMAN	pyrimidinergic receptor P2Y4	211	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)	1						AGGCAGGGCACGCCAAAGAGC	0.587000													6	110					0	0	0.001984	0	0
CXCR3	2833	broad.mit.edu	37	X	70837272	70837272	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:70837272G>A	uc004eaf.2	-	2	118	c.50C>T	c.(49-51)GCC>GTC	p.A17V	BCYRN1_uc011mpt.1_Intron|CXCR3_uc011mpx.1_Missense_Mutation_p.A64V	NM_001504	NP_001495	P49682	CXCR3_HUMAN	chemokine (C-X-C motif) receptor 3 isoform A	17	Extracellular (Potential).				cell adhesion|cellular component movement|chemotaxis|elevation of cytosolic calcium ion concentration	cytoplasm|integral to plasma membrane	C-X-C chemokine receptor activity			ovary(2)|central_nervous_system(1)	3	Renal(35;0.156)					CAGGAGGGCGGCAACCTCGGC	0.572000													4	194					0	0	0.001168	0	0
XIST	7503	broad.mit.edu	37	X	73069601	73069601	+	RNA	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:73069601G>A	uc004ebm.1	-	1		c.2988C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CTTATTTTGAGCACTGAATCA	0.323000													3	56					0	0	0.004672	0	0
FAM122C	159091	broad.mit.edu	37	X	133948871	133948871	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:133948871C>T	uc004exz.1	+	2	586	c.181C>T	c.(181-183)CGC>TGC	p.R61C	FAM122C_uc010nru.1_Missense_Mutation_p.R97C|FAM122C_uc004exw.2_Missense_Mutation_p.R61C|FAM122C_uc004exx.2_RNA|FAM122C_uc011mvq.1_RNA|FAM122C_uc004exy.1_Missense_Mutation_p.R61C	NM_138819	NP_620174	Q6P4D5	F222C_HUMAN	hypothetical protein LOC159091	61											0	Acute lymphoblastic leukemia(192;0.000127)					TAGGAATCGACGCTCTCTGGT	0.303000													8	421					0	0	0.008291	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993410	140993410	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:140993410A>G	uc004fbt.2	+	4	506	c.220A>G	c.(220-222)AAG>GAG	p.K74E	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	74							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGAGGGGAAGGACTCCCA	0.582000										HNSCC(15;0.026)			4	461					0	0	0.006214	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994960	140994960	+	Silent	SNP	G	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:140994960G>A	uc004fbt.2	+	4	2056	c.1770G>A	c.(1768-1770)CTG>CTA	p.L590L	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	590							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGGACTCCCTGTCTCCTCACT	0.567000										HNSCC(15;0.026)			6	889					0	0	0.001984	0	0
ATP2B3	492	broad.mit.edu	37	X	152807149	152807149	+	Silent	SNP	C	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:152807149C>T	uc004fht.1	+	3	555	c.429C>T	c.(427-429)GGC>GGT	p.G143G	ATP2B3_uc004fhs.1_Silent_p.G143G	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	143	Extracellular (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGTCGGGAGGCGCAGAAGATG	0.607000													13	240					0	0	0.016723	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6536011	6536013	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:6536011_6536013delCTC	uc001ano.1	-	4	396_398	c.295_297delGAG	c.(295-297)GAGdel	p.E99del	PLEKHG5_uc001ann.1_In_Frame_Del_p.E80del|PLEKHG5_uc001anq.1_In_Frame_Del_p.E120del|PLEKHG5_uc001anp.1_In_Frame_Del_p.E120del|PLEKHG5_uc009vma.1_5'UTR|PLEKHG5_uc010nzr.1_In_Frame_Del_p.E112del|PLEKHG5_uc001ank.1_In_Frame_Del_p.E43del|PLEKHG5_uc009vmb.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anl.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anm.1_In_Frame_Del_p.E43del	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	99	Poly-Glu.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CCACAGAGCTCTCCTCCTCCTCC	0.631											OREG0013041	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	533	---	---	---	---					
CLSTN1	22883	broad.mit.edu	37	1	9790640	9790642	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:9790640_9790642delCCT	uc001aqh.2	-	19	3629_3631	c.2870_2872delAGG	c.(2869-2874)GAGGGG>GGG	p.E957del	CLSTN1_uc001aqi.2_In_Frame_Del_p.E947del|CLSTN1_uc010oag.1_In_Frame_Del_p.E938del|CLSTN1_uc001aqf.2_In_Frame_Del_p.E221del	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	957	Glu-rich (highly acidic).|Cytoplasmic (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		CCCTGCTCCCCCTCCTCCTCCTC	0.557													12	317	---	---	---	---					
SPEN	23013	broad.mit.edu	37	1	16255142	16255143	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:16255142_16255143delGA	uc001axk.1	+	11	2611_2612	c.2407_2408delGA	c.(2407-2409)GAGfs	p.E803fs	SPEN_uc010obp.1_Frame_Shift_Del_p.E762fs	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	803	Arg-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GGAGAGAGTGGAGAGAGAGAGA	0.431													9	270	---	---	---	---					
MST1P2	11209	broad.mit.edu	37	1	16975913	16975918	+	RNA	DEL	CCTGTT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:16975913_16975918delCCTGTT	uc010och.1	+	11		c.1935_1940delCCTGTT			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GGTTGGGCACCCTGTTCCAGAACCCA	0.578													8	113	---	---	---	---					
CDCA8	55143	broad.mit.edu	37	1	38166149	38166151	+	In_Frame_Del	DEL	GAA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:38166149_38166151delGAA	uc001cbr.2	+	6	486_488	c.379_381delGAA	c.(379-381)GAAdel	p.E131del	CDCA8_uc001cbs.2_In_Frame_Del_p.E131del|CDCA8_uc010oih.1_In_Frame_Del_p.E64del	NM_018101	NP_060571	Q53HL2	BOREA_HUMAN	cell division cycle associated 8	131	Required for interaction with SENP3.|Poly-Glu.				cell division|chromosome organization|mitotic metaphase|mitotic prometaphase	chromosome passenger complex|chromosome, centromeric region|cytosol|nucleolus|spindle	protein binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AGTGGAAGAGGAAGAAGAAGAAG	0.384													7	440	---	---	---	---					
TMEM48	55706	broad.mit.edu	37	1	54298190	54298192	+	In_Frame_Del	DEL	TTA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:54298190_54298192delTTA	uc001cvs.2	-	3	492_494	c.251_253delTAA	c.(250-255)ATAAGT>AGT	p.I84del	TMEM48_uc010onu.1_In_Frame_Del_p.I84del|TMEM48_uc001cvt.2_5'UTR|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_5'UTR	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	84	Helical; Name=2; (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TTGAAAATACTTATTATTATTAT	0.305													7	249	---	---	---	---					
WDR78	79819	broad.mit.edu	37	1	67390426	67390426	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:67390426delT	uc001dcx.2	-	1	145	c.89delA	c.(88-90)AAGfs	p.K30fs	WDR78_uc001dcy.2_Frame_Shift_Del_p.K30fs|WDR78_uc001dcz.2_Frame_Shift_Del_p.K30fs|MIER1_uc001dda.3_5'Flank|MIER1_uc010opf.1_5'Flank|MIER1_uc009way.2_5'Flank|MIER1_uc001ddc.2_5'Flank|MIER1_uc001ddh.2_5'Flank|MIER1_uc001ddf.2_5'Flank|MIER1_uc001ddg.2_5'Flank|MIER1_uc010opg.1_5'Flank|MIER1_uc001dde.2_5'Flank	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	30										ovary(2)	2						GCACCACCCCTTTTTTTGGCC	0.622													8	515	---	---	---	---					
TNNI3K	51086	broad.mit.edu	37	1	74957824	74957826	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:74957824_74957826delCTT	uc001dgf.1	+	23	2276_2278	c.2225_2227delCTT	c.(2224-2229)CCTTCT>CCT	p.S746del	TNNI3K_uc001dge.1_In_Frame_Del_p.S847del	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	746	Poly-Ser.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TCTCTCTCACCTTCTTCTTCTTC	0.473													8	809	---	---	---	---					
AGL	178	broad.mit.edu	37	1	100378028	100378028	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:100378028delA	uc001dsi.1	+	29	4304	c.3904delA	c.(3904-3906)AAAfs	p.K1302fs	AGL_uc001dsj.1_Frame_Shift_Del_p.K1302fs|AGL_uc001dsk.1_Frame_Shift_Del_p.K1302fs|AGL_uc001dsl.1_Frame_Shift_Del_p.K1302fs|AGL_uc001dsm.1_Frame_Shift_Del_p.K1286fs|AGL_uc001dsn.1_Frame_Shift_Del_p.K1285fs	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1302	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GGAATTATCCAAAAAAAATAT	0.323													7	326	---	---	---	---					
NGF	4803	broad.mit.edu	37	1	115828721	115828722	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:115828721_115828722delCA	uc001efu.1	-	3	864_865	c.695_696delTG	c.(694-696)GTGfs	p.V232fs		NM_002506	NP_002497	P01138	NGF_HUMAN	nerve growth factor, beta polypeptide precursor	232					activation of MAPKK activity|activation of phospholipase C activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of cell cycle|nerve growth factor processing|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|Golgi lumen	growth factor activity|nerve growth factor receptor binding			upper_aerodigestive_tract(2)	2	Lung SC(450;0.211)	all_cancers(81;1.07e-06)|all_epithelial(167;4.43e-06)|all_lung(203;2.86e-05)|Lung NSC(69;4.99e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)	Clenbuterol(DB01407)	TCCTGCTGAGCACACACACACA	0.579													8	383	---	---	---	---					
HFE2	148738	broad.mit.edu	37	1	145415369	145415371	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:145415369_145415371delGAG	uc001eni.2	+	3	513_515	c.188_190delGAG	c.(187-192)CGAGGA>CGA	p.G69del	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_5'UTR|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	69	Poly-Gly.			G -> GG (in Ref. 3; ABC40718).	axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGAGCACTTCGAGGAGGAGGAGG	0.626													8	333	---	---	---	---					
ADAMTSL4	54507	broad.mit.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	-	-	rs149280379		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:150530506delG	uc001eux.2	+	14	2499	c.2263delG	c.(2263-2265)GGGfs	p.G755fs	ADAMTSL4_uc001euw.2_Frame_Shift_Del_p.G755fs|ADAMTSL4_uc009wlw.2_Frame_Shift_Del_p.G778fs|ADAMTSL4_uc010pcg.1_Frame_Shift_Del_p.G716fs|ADAMTSL4_uc009wlx.2_5'UTR	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	755	TSP type-1 2.				apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GCAGGAATTTGGGGGGGGTGG	0.692													14	530	---	---	---	---					
PVRL4	81607	broad.mit.edu	37	1	161044057	161044059	+	In_Frame_Del	DEL	CAC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:161044057_161044059delCAC	uc001fxo.2	-	6	1404_1406	c.1105_1107delGTG	c.(1105-1107)GTGdel	p.V369del	PVRL4_uc010pjy.1_In_Frame_Del_p.V48del|PVRL4_uc010pjz.1_In_Frame_Del_p.V103del	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	369	Helical; (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			GGGACATGAGCACCACCACCACC	0.571													8	345	---	---	---	---					
NOS1AP	9722	broad.mit.edu	37	1	162326888	162326890	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:162326888_162326890delCAG	uc001gbv.2	+	8	1288_1290	c.901_903delCAG	c.(901-903)CAGdel	p.Q306del	NOS1AP_uc010pkr.1_In_Frame_Del_p.Q301del|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_In_Frame_Del_p.Q301del	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	306	Poly-Gln.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			gcagctcctccagcagcAGCAGC	0.512													7	169	---	---	---	---					
SYT2	127833	broad.mit.edu	37	1	202568423	202568425	+	In_Frame_Del	DEL	TCT	-	-	rs151217119		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:202568423_202568425delTCT	uc001gye.2	-	8	1167_1169	c.974_976delAGA	c.(973-978)AAGACA>ACA	p.K325del	SYT2_uc010pqb.1_In_Frame_Del_p.K325del|SYT2_uc009xaf.2_In_Frame_Del_p.K155del	NM_001136504	NP_001129976	Q8N9I0	SYT2_HUMAN	synaptotagmin II	325	Phospholipid binding (By similarity).|C2 2.|Cytoplasmic (Potential).				neurotransmitter secretion	cell junction|chromaffin granule membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	protein binding|transporter activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.169)		Botulinum Toxin Type B(DB00042)	TTCACGGTTGTCTTCTTCTTCTT	0.547													7	504	---	---	---	---					
CENPF	1063	broad.mit.edu	37	1	214818826	214818826	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:214818826delA	uc001hkm.2	+	13	6087	c.5913delA	c.(5911-5913)TCAfs	p.S1971fs		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2067	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		ATACTATGTCAAAAAAAACCA	0.408													8	214	---	---	---	---					
LBR	3930	broad.mit.edu	37	1	225592220	225592220	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:225592220delT	uc001hoy.2	-	13	1716	c.1573delA	c.(1573-1575)ACCfs	p.T525fs	LBR_uc001hoz.2_Frame_Shift_Del_p.T525fs	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	525					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		GTATGAATGGTTTTTAAATCT	0.318													7	97	---	---	---	---					
EPHX1	2052	broad.mit.edu	37	1	226026384	226026384	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:226026384delC	uc001hpk.2	+	4	474	c.394delC	c.(394-396)CCCfs	p.P132fs	EPHX1_uc001hpl.2_Frame_Shift_Del_p.P132fs	NM_001136018	NP_001129490	P07099	HYEP_HUMAN	epoxide hydrolase 1	132					aromatic compound catabolic process|response to toxin	endoplasmic reticulum membrane|integral to membrane|microsome	cis-stilbene-oxide hydrolase activity|epoxide hydrolase activity			ovary(3)|lung(1)	4	Breast(184;0.197)					CCACGTGAAGCCCCCCCAGCT	0.627													7	946	---	---	---	---					
CHRM3	1131	broad.mit.edu	37	1	240072444	240072444	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr1:240072444delA	uc001hyp.2	+	5	2472	c.1693delA	c.(1693-1695)AAAfs	p.K565fs		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	565	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CCAGTGTGACAAAAAAAAGAG	0.502													7	226	---	---	---	---					
PCDH15	65217	broad.mit.edu	37	10	55587198	55587200	+	In_Frame_Del	DEL	GGC	-	-	rs12246234		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:55587198_55587200delGGC	uc001jju.1	-	32	4715_4717	c.4320_4322delGCC	c.(4318-4323)CCGCCT>CCT	p.1440_1441PP>P	PCDH15_uc010qhq.1_In_Frame_Del_p.1445_1446PP>P|PCDH15_uc010qhr.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc010qhs.1_In_Frame_Del_p.1452_1453PP>P|PCDH15_uc010qht.1_In_Frame_Del_p.1447_1448PP>P|PCDH15_uc010qhu.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_In_Frame_Del_p.1437_1438PP>P|PCDH15_uc010qhw.1_In_Frame_Del_p.1400_1401PP>P|PCDH15_uc010qhx.1_In_Frame_Del_p.1369_1370PP>P|PCDH15_uc010qhy.1_In_Frame_Del_p.1445_1446PP>P|PCDH15_uc010qhz.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc010qia.1_In_Frame_Del_p.1418_1419PP>P|PCDH15_uc010qib.1_In_Frame_Del_p.1415_1416PP>P	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1440_1441	Poly-Pro.|Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACCTggcggaggcggcggcggcg	0.438										HNSCC(58;0.16)			14	303	---	---	---	---					
HECTD2	143279	broad.mit.edu	37	10	93247481	93247481	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:93247481delA	uc001khl.2	+	11	1237	c.1137delA	c.(1135-1137)GCAfs	p.A379fs	LOC100188947_uc010qnl.1_Intron|HECTD2_uc010qnm.1_Frame_Shift_Del_p.A383fs|HECTD2_uc001khm.2_RNA|HECTD2_uc009xty.1_Intron|HECTD2_uc001khn.1_Frame_Shift_Del_p.A29fs	NM_182765	NP_877497	Q5U5R9	HECD2_HUMAN	HECT domain containing 2 isoform a	379					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			skin(1)	1						CTGTAGCTGCAAAAAAAATCA	0.318													8	507	---	---	---	---					
HELLS	3070	broad.mit.edu	37	10	96331163	96331163	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:96331163delA	uc001kjt.2	+	7	559	c.454delA	c.(454-456)AAAfs	p.K152fs	HELLS_uc001kjs.2_Frame_Shift_Del_p.K136fs|HELLS_uc009xul.2_Frame_Shift_Del_p.K152fs|HELLS_uc009xum.2_Frame_Shift_Del_p.K152fs|HELLS_uc009xun.2_Frame_Shift_Del_p.K28fs|HELLS_uc009xuo.2_Frame_Shift_Del_p.K152fs|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Frame_Shift_Del_p.K14fs|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	152					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		GTCTGTGGCTAAAAAAAATAA	0.214													7	229	---	---	---	---					
LZTS2	84445	broad.mit.edu	37	10	102763415	102763417	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:102763415_102763417delCCT	uc001ksj.2	+	3	629_631	c.560_562delCCT	c.(559-564)GCCTCC>GCC	p.S197del	LZTS2_uc010qpw.1_In_Frame_Del_p.S197del|LZTS2_uc001ksk.2_In_Frame_Del_p.S197del|LZTS2_uc001ksl.2_In_Frame_Del_p.S197del|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	197	Ser-rich.|Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		GGGGGCCCTGcctcctcctcctc	0.557													16	735	---	---	---	---					
PPRC1	23082	broad.mit.edu	37	10	103901076	103901077	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:103901076_103901077insC	uc001kum.2	+	5	2850_2851	c.2811_2812insC	c.(2809-2814)CTGCCCfs	p.L937fs	PPRC1_uc001kun.2_Frame_Shift_Ins_p.L817fs|PPRC1_uc010qqj.1_Frame_Shift_Ins_p.L937fs|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	937_938	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		ATCCTTGCCTGCCCCCCCCACC	0.604													7	299	---	---	---	---					
SLK	9748	broad.mit.edu	37	10	105727547	105727549	+	In_Frame_Del	DEL	AGA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:105727547_105727549delAGA	uc001kxo.1	+	1	78_80	c.44_46delAGA	c.(43-48)GAGAAG>GAG	p.K19del	SLK_uc001kxp.1_In_Frame_Del_p.K19del	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	19	Poly-Lys.				apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TTGGGGAGCGAGAAGAAGAAGAA	0.448													9	424	---	---	---	---					
PNLIPRP3	119548	broad.mit.edu	37	10	118215233	118215234	+	Splice_Site	INS	-	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr10:118215233_118215234insA	uc001lcl.3	+	5	558	c.457_splice	c.e5-1	p.K153_splice		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor						lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		AATTCTTTCAGAAAAAATTTGA	0.386													8	180	---	---	---	---					
NLRP6	171389	broad.mit.edu	37	11	281553	281555	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:281553_281555delGAG	uc010qvs.1	+	4	1819_1821	c.1819_1821delGAG	c.(1819-1821)GAGdel	p.E611del	NLRP6_uc010qvt.1_In_Frame_Del_p.E611del	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	611	Poly-Glu.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGAAGAGCCAGAGGAGGAGGAGG	0.670													14	460	---	---	---	---					
SMPD1	6609	broad.mit.edu	37	11	6412868	6412870	+	In_Frame_Del	DEL	TAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:6412868_6412870delTAG	uc001mcw.2	+	2	747_749	c.573_575delTAG	c.(571-576)CCTAGC>CCC	p.S192del	SMPD1_uc001mcv.1_Intron|SMPD1_uc009yex.2_RNA|SMPD1_uc001mcx.2_In_Frame_Del_p.S192del|SMPD1_uc009yew.2_In_Frame_Del_p.S191del	NM_000543	NP_000534	P17405	ASM_HUMAN	sphingomyelin phosphodiesterase 1, acid	190					cell death|ceramide biosynthetic process|negative regulation of MAP kinase activity|nervous system development|positive regulation of protein dephosphorylation|signal transduction|sphingomyelin catabolic process|termination of signal transduction	lysosome	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;4.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)	Desipramine(DB01151)	CCAAACCCCCTAGCCCCCCAGCC	0.626													9	73	---	---	---	---					
APBB1	322	broad.mit.edu	37	11	6432090	6432092	+	In_Frame_Del	DEL	TCC	-	-	rs145320037		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:6432090_6432092delTCC	uc001mdb.1	-	2	586_588	c.486_488delGGA	c.(484-489)GAGGAT>GAT	p.E162del	APBB1_uc001mdc.1_In_Frame_Del_p.E162del|APBB1_uc010rah.1_Intron	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	162	Glu-rich.				apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding	p.E162K(1)		breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		atcatcatcatcctcctcctcct	0.404													7	88	---	---	---	---					
OR10A5	144124	broad.mit.edu	37	11	6867223	6867225	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:6867223_6867225delTTC	uc001met.1	+	1	310_312	c.310_312delTTC	c.(310-312)TTCdel	p.F108del		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCAGATGTATTTCTTCTTCTTCT	0.517													8	400	---	---	---	---					
OR10A2	341276	broad.mit.edu	37	11	6891253	6891255	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:6891253_6891255delTTC	uc001meu.1	+	1	268_270	c.268_270delTTC	c.(268-270)TTCdel	p.F94del		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	94	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TCAGATGTATTTCTTCTTCTTCT	0.517													7	407	---	---	---	---					
FADS2	9415	broad.mit.edu	37	11	61607885	61607887	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:61607885_61607887delTCC	uc001nsl.1	+	3	548_550	c.398_400delTCC	c.(397-402)TTCCTC>TTC	p.L137del	FADS2_uc001nsj.2_In_Frame_Del_p.L115del|FADS2_uc010rlo.1_In_Frame_Del_p.L106del|FADS2_uc001nsk.2_In_Frame_Del_p.L137del	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	137	Helical; (Potential).			LLLL -> RTRG (in Ref. 8; CAB43280).	electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	CACGTGTTCTTCCTCCTCCTCCT	0.537													8	768	---	---	---	---					
UVRAG	7405	broad.mit.edu	37	11	75694430	75694431	+	Splice_Site	INS	-	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:75694430_75694431insA	uc001oxc.2	+	8	941	c.700_splice	c.e8-1	p.K234_splice	UVRAG_uc010rrw.1_Splice_Site_p.K133_splice|UVRAG_uc001oxd.2_Splice_Site|UVRAG_uc010rrx.1_5'UTR|UVRAG_uc009yuh.1_Splice_Site	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated						DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						TATTTATTTAGAAAAAAAAAAG	0.302													11	154	---	---	---	---					
DDX10	1662	broad.mit.edu	37	11	108788635	108788637	+	In_Frame_Del	DEL	TGA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:108788635_108788637delTGA	uc001pkm.2	+	17	2405_2407	c.2340_2342delTGA	c.(2338-2343)AGTGAT>AGT	p.D788del	DDX10_uc001pkl.1_In_Frame_Del_p.D788del	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	788							ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		TGGATTGGAGtgatgatgatgat	0.310			T	NUP98	AML*								9	228	---	---	---	---					
CD3G	917	broad.mit.edu	37	11	118220583	118220583	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr11:118220583delA	uc001psu.2	+	3	285	c.205delA	c.(205-207)AAAfs	p.K69fs	CD3G_uc009zaa.1_Frame_Shift_Del_p.K9fs	NM_000073	NP_000064	P09693	CD3G_HUMAN	CD3G antigen, gamma polypeptide precursor	69	Extracellular (Potential).|Ig-like.				establishment or maintenance of cell polarity|protein complex assembly|protein transport|regulation of apoptosis|T cell activation|T cell costimulation|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	protein heterodimerization activity|receptor signaling complex scaffold activity|T cell receptor binding|transmembrane receptor activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		AACTGAAGATAAAAAAAAATG	0.403													8	261	---	---	---	---					
PDE3A	5139	broad.mit.edu	37	12	20799489	20799489	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:20799489delC	uc001reh.1	+	11	2339	c.2317delC	c.(2317-2319)CCAfs	p.P773fs		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	773	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	ACAGCCTATTCCAGGCCTCTC	0.413													24	441	---	---	---	---					
FAM60A	58516	broad.mit.edu	37	12	31448178	31448178	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:31448178delT	uc010sjz.1	-	3	457	c.218delA	c.(217-219)AACfs	p.N73fs	FAM60A_uc001rkd.2_Frame_Shift_Del_p.N73fs|FAM60A_uc010ska.1_Frame_Shift_Del_p.N73fs|FAM60A_uc001rke.2_Frame_Shift_Del_p.N73fs|FAM60A_uc010skb.1_Intron|FAM60A_uc001rkc.2_Frame_Shift_Del_p.N98fs	NM_021238	NP_067061	Q9NP50	FA60A_HUMAN	family with sequence similarity 60, member A	73											0	all_cancers(9;5.22e-13)|all_epithelial(9;4e-13)|all_lung(12;1.2e-11)|Lung NSC(12;2.17e-09)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0207)|Lung SC(12;0.0592)|Esophageal squamous(101;0.162)					ATGATTCCAGTTTTTTTTTGA	0.358													9	120	---	---	---	---					
KRT83	3889	broad.mit.edu	37	12	52715037	52715038	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:52715037_52715038insT	uc001saf.2	-	1	145_146	c.82_83insA	c.(82-84)AGCfs	p.S28fs		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	28	Head.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCAGCAGCGGCTTGGCCGGGGC	0.678													9	330	---	---	---	---					
SMARCC2	6601	broad.mit.edu	37	12	56558379	56558381	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:56558379_56558381delAGG	uc001skb.2	-	27	3380_3382	c.3274_3276delCCT	c.(3274-3276)CCTdel	p.P1092del	SMARCC2_uc001skd.2_Intron|SMARCC2_uc001ska.2_Intron|SMARCC2_uc001skc.2_Intron|SMARCC2_uc010sqf.1_Intron	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1092	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			TGGATGGAGCAGGAGGAGGAGGA	0.591													8	128	---	---	---	---					
MYO1A	4640	broad.mit.edu	37	12	57422572	57422573	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:57422572_57422573insT	uc001smw.3	-	28	3341_3342	c.3098_3099insA	c.(3097-3099)AAGfs	p.K1033fs	MYO1A_uc010sqz.1_Frame_Shift_Ins_p.K871fs|MYO1A_uc009zpd.2_Frame_Shift_Ins_p.K1033fs	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	1033					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						AATGACTCCCCTTTTTTTTGTA	0.559													7	450	---	---	---	---					
LRP1	4035	broad.mit.edu	37	12	57605740	57605742	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:57605740_57605742delTGC	uc001snd.2	+	87	13755_13757	c.13289_13291delTGC	c.(13288-13293)TTGCTG>TTG	p.4430_4431LL>L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4430_4431	Helical; (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCTCTGCTGTTGCTGCTGCTGCT	0.557													18	545	---	---	---	---					
MARS	4141	broad.mit.edu	37	12	57883053	57883053	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:57883053delT	uc001sog.2	+	3	227	c.204delT	c.(202-204)TATfs	p.Y68fs	ARHGAP9_uc001sod.2_5'Flank|ARHGAP9_uc001soe.1_5'Flank|MARS_uc001sof.1_RNA|MARS_uc010srp.1_Intron|MARS_uc010srq.1_5'UTR	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	68					methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	TGGGCAGATATTTTTTTTTGT	0.488													13	233	---	---	---	---					
CEP290	80184	broad.mit.edu	37	12	88524078	88524079	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:88524078_88524079insT	uc001tar.2	-	9	979_980	c.635_636insA	c.(634-636)AACfs	p.N212fs	CEP290_uc001tat.2_5'Flank|CEP290_uc009zsl.1_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	212	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TAAGCTCATAGTTTTTTTTAGA	0.317													8	631	---	---	---	---					
SFRS8	6433	broad.mit.edu	37	12	132281734	132281736	+	In_Frame_Del	DEL	AGA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr12:132281734_132281736delAGA	uc001uja.1	+	16	2686_2688	c.2546_2548delAGA	c.(2545-2550)GAGAAG>GAG	p.K853del	SFRS8_uc010tbn.1_In_Frame_Del_p.K905del	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	splicing factor, arginine/serine-rich 8	853	Poly-Lys.|Arg/Ser-rich (RS domain).				mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|RNA binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.44e-07)|Epithelial(86;2.94e-06)|all cancers(50;4.82e-05)		AGTCCCCACGAGAAGAAGAAGAA	0.493													12	650	---	---	---	---					
GSX1	219409	broad.mit.edu	37	13	28367927	28367929	+	In_Frame_Del	DEL	GGC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr13:28367927_28367929delGGC	uc001urr.1	+	2	685_687	c.637_639delGGC	c.(637-639)GGCdel	p.G218del		NM_145657	NP_663632	Q9H4S2	GSX1_HUMAN	GS homeobox 1	218	Poly-Gly.				positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung SC(185;0.0161)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0402)|all cancers(112;0.0404)|OV - Ovarian serous cystadenocarcinoma(117;0.197)		CAACCATCgtggcggcggcggcg	0.463													7	274	---	---	---	---					
RFC3	5983	broad.mit.edu	37	13	34398063	34398063	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr13:34398063delA	uc001uuz.2	+	3	345	c.235delA	c.(235-237)AAAfs	p.K79fs	RFC3_uc001uva.2_Frame_Shift_Del_p.K79fs|RFC3_uc010ted.1_Frame_Shift_Del_p.K79fs	NM_002915	NP_002906	P40938	RFC3_HUMAN	replication factor C 3 isoform 1	79					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|response to organophosphorus|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding				0		Hepatocellular(188;0.0191)|Lung SC(185;0.0548)		all cancers(112;5.09e-06)|Epithelial(112;6.52e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00107)|OV - Ovarian serous cystadenocarcinoma(117;0.0285)|GBM - Glioblastoma multiforme(144;0.123)		GACTCCATCTAAAAAAAAAAT	0.269													17	133	---	---	---	---					
ABCC4	10257	broad.mit.edu	37	13	95696016	95696016	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr13:95696016delT	uc001vmd.3	-	29	3774	c.3655delA	c.(3655-3657)ATCfs	p.I1219fs	ABCC4_uc010afj.2_Intron|ABCC4_uc010afk.2_Frame_Shift_Del_p.I1172fs	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1219	ABC transporter 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TTCTCCCGGATTTTTTTTTGT	0.378													16	461	---	---	---	---					
ERCC5	2073	broad.mit.edu	37	13	103524611	103524612	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr13:103524611_103524612insA	uc001vpw.2	+	13	3185_3186	c.2742_2743insA	c.(2740-2745)GTGAAAfs	p.V914fs	ERCC5_uc001vpu.1_Frame_Shift_Ins_p.V1368fs|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Frame_Shift_Ins_p.V746fs	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	914_915					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ACACCAAAGTGAAAAAAAAATT	0.431			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				8	225	---	---	---	---					
CHD8	57680	broad.mit.edu	37	14	21883981	21883983	+	In_Frame_Del	DEL	TCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:21883981_21883983delTCT	uc001was.1	-	6	1057_1059	c.963_965delAGA	c.(961-966)GAAGAG>GAG	p.321_322EE>E	CHD8_uc001war.1_In_Frame_Del_p.217_218EE>E	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	600_601					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TACATCCACCTCTTCTTCTTCTT	0.433													8	478	---	---	---	---					
LRP10	26020	broad.mit.edu	37	14	23341527	23341529	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:23341527_23341529delCCT	uc001whd.2	+	1	568_570	c.15_17delCCT	c.(13-18)ACCCTC>ACC	p.L11del	LRP10_uc001whe.2_5'Flank	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	11					endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		TGTTGGCCACCCTCCTCCTCCTC	0.670													37	433	---	---	---	---					
C14orf39	317761	broad.mit.edu	37	14	60903565	60903565	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:60903565delA	uc001xez.3	-	18	1872	c.1762delT	c.(1762-1764)TGAfs	p.*588fs	C14orf39_uc010apo.2_Frame_Shift_Del_p.*299fs	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	588										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TGACTAGCTCAAAAAAAAGTA	0.289													9	412	---	---	---	---					
SIPA1L1	26037	broad.mit.edu	37	14	72190482	72190484	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:72190482_72190484delTCC	uc001xms.2	+	16	4738_4740	c.4390_4392delTCC	c.(4390-4392)TCCdel	p.S1468del	SIPA1L1_uc001xmt.2_In_Frame_Del_p.S1447del|SIPA1L1_uc001xmu.2_In_Frame_Del_p.S1447del|SIPA1L1_uc001xmv.2_In_Frame_Del_p.S1468del|SIPA1L1_uc010ttm.1_In_Frame_Del_p.S922del|SIPA1L1_uc001xmw.2_In_Frame_Del_p.S233del	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1468	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ctcctcctcttcctcctcctcct	0.468													11	531	---	---	---	---					
RBM25	58517	broad.mit.edu	37	14	73572607	73572608	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:73572607_73572608delAG	uc001xno.2	+	11	1403_1404	c.1195_1196delAG	c.(1195-1197)AGAfs	p.R399fs	RBM25_uc010ttu.1_Frame_Shift_Del_p.R399fs|RBM25_uc001xnp.2_Frame_Shift_Del_p.R194fs	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	399	Necessary for nuclear speckle localization.|Glu-rich.|Arg-rich.				apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		agagcgggaaagagagagagag	0.173													9	79	---	---	---	---					
MLH3	27030	broad.mit.edu	37	14	75514338	75514338	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:75514338delT	uc001xrd.1	-	2	2237	c.2021delA	c.(2020-2022)AATfs	p.N674fs	MLH3_uc001xre.1_Frame_Shift_Del_p.N674fs|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	674					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		CGTTCTGCAATTTTTTTTGTT	0.348								MMR					7	314	---	---	---	---					
C14orf4	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:77493762_77493767delTGCTGC	uc001xsy.2	-	1	1268_1273	c.369_374delGCAGCA	c.(367-375)CAGCAGCAA>CAA	p.123_125QQQ>Q		NM_024496	NP_078772	Q9H1B7	I2BPL_HUMAN	chromosome 14 open reading frame 4	123_125	Poly-Gln.|Potential.					nucleus					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.00347)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)		GAgctgttgttgctgctgctgctgct	0.233													4	3	---	---	---	---					
ATXN3	4287	broad.mit.edu	37	14	92537355	92537357	+	In_Frame_Del	DEL	CTG	-	-	rs67474612	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:92537355_92537357delCTG	uc001yac.3	-	10	982_984	c.913_915delCAG	c.(913-915)CAGdel	p.Q305del	ATXN3_uc010aug.2_In_Frame_Del_p.Q290del|ATXN3_uc001yad.3_In_Frame_Del_p.Q250del|ATXN3_uc010auh.2_In_Frame_Del_p.Q239del|ATXN3_uc001yae.3_In_Frame_Del_p.Q207del	NM_004993	NP_004984	P54252	ATX3_HUMAN	ataxin 3 reference isoform	305	Poly-Gln.				cell death|nervous system development|nucleotide-excision repair|regulation of transcription, DNA-dependent|synaptic transmission|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(154;0.0768)		COAD - Colon adenocarcinoma(157;0.224)		ATAGGTCCCCctgctgctgctgc	0.325													7	247	---	---	---	---					
C14orf49	161176	broad.mit.edu	37	14	95921888	95921890	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr14:95921888_95921890delCTC	uc001yei.3	-	5	976_978	c.961_963delGAG	c.(961-963)GAGdel	p.E321del	C14orf49_uc010avi.2_In_Frame_Del_p.E321del|C14orf49_uc001yej.1_In_Frame_Del_p.E321del	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	321	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CCCGCAGCCGCTCCTCCTCCTCC	0.616													12	441	---	---	---	---					
VPS33B	26276	broad.mit.edu	37	15	91550236	91550238	+	In_Frame_Del	DEL	TCC	-	-	rs147271815		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr15:91550236_91550238delTCC	uc002bqp.1	-	9	996_998	c.642_644delGGA	c.(640-645)GAGGAT>GAT	p.E214del	VPS33B_uc002bqq.1_In_Frame_Del_p.E123del|VPS33B_uc010uqu.1_In_Frame_Del_p.E187del	NM_018668	NP_061138	Q9H267	VP33B_HUMAN	vacuolar protein sorting 33B (yeast homolog))	214					cellular membrane fusion|lysosome localization|melanosome localization|platelet alpha granule organization|protein transport|vesicle docking involved in exocytosis	late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm|platelet alpha granule	protein binding			ovary(2)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					GGTTTCGCCATCCTCCTCCTCCT	0.522													8	621	---	---	---	---					
MKL2	57496	broad.mit.edu	37	16	14346299	14346300	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:14346299_14346300insC	uc010uza.1	+	15	2798_2799	c.2643_2644insC	c.(2641-2646)GATCCCfs	p.D881fs	MKL2_uc002dcg.2_Frame_Shift_Ins_p.D831fs|MKL2_uc002dcj.2_Frame_Shift_Ins_p.D126fs	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	870_871					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						AGACAAAAGATCCCCCCCGCTA	0.564													12	255	---	---	---	---					
PDILT	204474	broad.mit.edu	37	16	20370700	20370702	+	In_Frame_Del	DEL	CCA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:20370700_20370702delCCA	uc002dhc.1	-	12	1917_1919	c.1694_1696delTGG	c.(1693-1698)GTGGCT>GCT	p.V565del		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	565					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						TTTGGCTTAGCCACCACCACCAC	0.478													7	822	---	---	---	---					
RABEP2	79874	broad.mit.edu	37	16	28931200	28931202	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:28931200_28931202delCTG	uc002drq.2	-	3	385_387	c.337_339delCAG	c.(337-339)CAGdel	p.Q113del	uc010vct.1_Intron|RABEP2_uc010vdf.1_In_Frame_Del_p.Q42del|RABEP2_uc010byn.2_In_Frame_Del_p.Q113del|RABEP2_uc002drr.2_In_Frame_Del_p.Q113del	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	113	Poly-Gln.|Potential.				endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						CCTCACAGTCCTGCTGCTGCTGC	0.527													9	238	---	---	---	---					
EDC4	23644	broad.mit.edu	37	16	67913767	67913769	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:67913767_67913769delCAG	uc002eur.2	+	16	2002_2004	c.1836_1838delCAG	c.(1834-1839)CCCAGC>CCC	p.S617del	EDC4_uc010cer.2_In_Frame_Del_p.S236del|EDC4_uc010vkg.1_In_Frame_Del_p.S549del|EDC4_uc002eus.2_In_Frame_Del_p.S347del|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	617	Ser-rich.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		CTGCCTCTCCcagcagcagcagc	0.453													14	253	---	---	---	---					
ADAMTS18	170692	broad.mit.edu	37	16	77356311	77356311	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:77356311delA	uc002ffc.3	-	14	2504	c.2085delT	c.(2083-2085)TTTfs	p.F695fs	ADAMTS18_uc010chc.1_Frame_Shift_Del_p.F283fs|ADAMTS18_uc002ffe.1_Frame_Shift_Del_p.F391fs	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	695	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.A696fs*18(2)		large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CGGACATTGCAAAAAAAAATT	0.403													13	406	---	---	---	---					
FANCA	2175	broad.mit.edu	37	16	89831345	89831346	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:89831345_89831346delAG	uc002fou.1	-	28	2772_2773	c.2730_2731delCT	c.(2728-2733)CTCTGGfs	p.L910fs	FANCA_uc010vpn.1_Frame_Shift_Del_p.L910fs|FANCA_uc010vpo.1_Frame_Shift_Del_p.L39fs	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	910_911					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		CTGTGTGTCCAGAGAGAGAGGG	0.559			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				9	281	---	---	---	---					
TCF25	22980	broad.mit.edu	37	16	89951019	89951020	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr16:89951019_89951020insA	uc002fpb.2	+	3	466_467	c.384_385insA	c.(382-387)AAGAAAfs	p.K128fs	TCF25_uc002fpc.2_5'UTR	NM_014972	NP_055787	Q9BQ70	TCF25_HUMAN	NULP1	128_129					heart development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(9;4.71e-08)|Lung NSC(15;0.000192)|all_lung(18;0.000319)|all_neural(9;0.0122)|all_hematologic(23;0.027)		BRCA - Breast invasive adenocarcinoma(80;0.0288)		TCCGGAAGAAGAAAAAAAAACA	0.406													11	117	---	---	---	---					
MYH10	4628	broad.mit.edu	37	17	8415820	8415822	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:8415820_8415822delTTC	uc002gll.2	-	22	2902_2904	c.2806_2808delGAA	c.(2806-2808)GAAdel	p.E936del	MYH10_uc002glm.2_In_Frame_Del_p.E967del|MYH10_uc010cnx.2_In_Frame_Del_p.E945del	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	936	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TTTGGTTTCTTTCTTCTTCTTCT	0.350													7	181	---	---	---	---					
TOP3A	7156	broad.mit.edu	37	17	18196068	18196069	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:18196068_18196069insC	uc002gsx.1	-	11	1400_1401	c.1171_1172insG	c.(1171-1173)GCCfs	p.A391fs	TOP3A_uc010cpz.1_5'Flank|TOP3A_uc010vxr.1_Intron|TOP3A_uc002gsw.1_Intron|TOP3A_uc010vxs.1_Frame_Shift_Ins_p.A289fs	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	391					DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						CTGGGCAAAGGCCCCCCAGCGT	0.550													7	284	---	---	---	---					
SUPT6H	6830	broad.mit.edu	37	17	27027202	27027204	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:27027202_27027204delAGC	uc002hby.2	+	34	4663_4665	c.4573_4575delAGC	c.(4573-4575)AGCdel	p.S1528del	SUPT6H_uc010crt.2_In_Frame_Del_p.S1528del	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1528	Poly-Ser.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CATCACCCCTAGCAGCAGCAGCA	0.537													29	961	---	---	---	---					
GAS2L2	246176	broad.mit.edu	37	17	34071994	34071996	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:34071994_34071996delTCC	uc002hjv.1	-	6	2548_2550	c.2520_2522delGGA	c.(2518-2523)GAGGAA>GAA	p.840_841EE>E		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	840_841					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ctcctttccttcctcctcctcct	0.527													11	208	---	---	---	---					
KRTAP4-11	653240	broad.mit.edu	37	17	39274566	39274567	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:39274566_39274567insT	uc002hvz.2	-	1	40_41	c.1_2insA	c.(1-3)ATGfs	p.M1fs		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	1						keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GGAGTTTACCATGGTGTCAGAG	0.564													7	115	---	---	---	---					
KLHL11	55175	broad.mit.edu	37	17	40011270	40011271	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:40011270_40011271delTC	uc002hyf.1	-	2	854_855	c.848_849delGA	c.(847-849)AGAfs	p.R283fs		NM_018143	NP_060613	Q9NVR0	KLH11_HUMAN	kelch-like 11 precursor	283	BACK.					extracellular region					0		Breast(137;0.00156)				CTTCAAAGTATCTCTCTCTCTC	0.401													8	245	---	---	---	---					
TEX2	55852	broad.mit.edu	37	17	62291438	62291440	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:62291438_62291440delTCC	uc002jec.2	-	2	311_313	c.138_140delGGA	c.(136-141)GAGGAA>GAA	p.46_47EE>E	TEX2_uc002jed.2_In_Frame_Del_p.46_47EE>E|TEX2_uc002jee.2_In_Frame_Del_p.46_47EE>E	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	46_47	Poly-Glu.				signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		ctcctcctcttcctcctcctcct	0.468													7	274	---	---	---	---					
KIAA0195	9772	broad.mit.edu	37	17	73482037	73482039	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:73482037_73482039delTGC	uc002jnz.3	+	4	505_507	c.230_232delTGC	c.(229-234)GTGCTG>GTG	p.L81del	KIAA0195_uc010wsa.1_In_Frame_Del_p.L91del	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	81	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTACTGGCCGTGCTGCTGCTGCT	0.675													8	127	---	---	---	---					
ZACN	353174	broad.mit.edu	37	17	74077980	74077982	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:74077980_74077982delCTG	uc002jqn.2	+	8	981_983	c.898_900delCTG	c.(898-900)CTGdel	p.L304del	ZACN_uc002jqo.2_RNA|ZACN_uc010dgu.2_RNA|EXOC7_uc002jqp.1_3'UTR|EXOC7_uc010dgv.1_3'UTR|EXOC7_uc002jqs.2_3'UTR|EXOC7_uc002jqq.2_3'UTR|EXOC7_uc010wsw.1_3'UTR|EXOC7_uc010wsx.1_3'UTR|EXOC7_uc002jqr.2_3'UTR|EXOC7_uc010wsv.1_3'UTR	NM_180990	NP_851321	Q401N2	ZACN_HUMAN	zinc activated ligand-gated ion channel	304	Helical; Name=3; (Potential).|Leu-rich.				response to zinc ion	integral to membrane|membrane fraction|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity				0						CTTCACCATCCTGCTGCTGCTGC	0.655													7	395	---	---	---	---					
SLC26A11	284129	broad.mit.edu	37	17	78201649	78201651	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr17:78201649_78201651delTGC	uc002jyb.1	+	7	895_897	c.626_628delTGC	c.(625-630)ATGCTG>ATG	p.L213del	SLC26A11_uc002jyc.1_In_Frame_Del_p.L213del|SLC26A11_uc002jyd.1_In_Frame_Del_p.L213del|SLC26A11_uc010dhv.1_In_Frame_Del_p.L213del	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	213	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CTGGTCTGCATGCTGCTGCTGCT	0.675													12	502	---	---	---	---					
CXXC1	30827	broad.mit.edu	37	18	47812275	47812277	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr18:47812275_47812277delCTG	uc002leq.3	-	5	1214_1216	c.481_483delCAG	c.(481-483)CAGdel	p.Q161del	CXXC1_uc002lep.3_In_Frame_Del_p.Q18del|CXXC1_uc002ler.3_In_Frame_Del_p.Q161del|CXXC1_uc010doy.2_In_Frame_Del_p.Q161del|CXXC1_uc002les.2_In_Frame_Del_p.Q161del	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	161	CXXC-type.				histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						ACCGTTTGATctgctgctgctgc	0.468													9	141	---	---	---	---					
ONECUT2	9480	broad.mit.edu	37	18	55103477	55103479	+	In_Frame_Del	DEL	CAC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr18:55103477_55103479delCAC	uc002lgo.2	+	1	561_563	c.529_531delCAC	c.(529-531)CACdel	p.H184del		NM_004852	NP_004843	O95948	ONEC2_HUMAN	one cut domain, family member 2	184	Poly-His.				organ morphogenesis	nucleus	sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3		Colorectal(73;0.234)		READ - Rectum adenocarcinoma(59;0.227)|Colorectal(16;0.245)		ccaccatccgcaccaccaccacc	0.473													7	41	---	---	---	---					
PSMC4	5704	broad.mit.edu	37	19	40480653	40480654	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:40480653_40480654insC	uc002omq.2	+	6	628_629	c.591_592insC	c.(589-594)GATCCCfs	p.D197fs	PSMC4_uc002omr.2_Frame_Shift_Ins_p.D166fs	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	197_198					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCGGCATCGATCCCCCCCGAGG	0.614													7	199	---	---	---	---					
SLC8A2	6543	broad.mit.edu	37	19	47935681	47935683	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:47935681_47935683delTCC	uc002pgx.2	-	9	2408_2410	c.2130_2132delGGA	c.(2128-2133)GAGGAC>GAC	p.E710del	SLC8A2_uc010xyq.1_In_Frame_Del_p.E466del|SLC8A2_uc010xyr.1_In_Frame_Del_p.E173del|SLC8A2_uc010ele.2_In_Frame_Del_p.E710del	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	710	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CCGGGACCCGTCCTCCTCCTCCT	0.616													47	558	---	---	---	---					
FUZ	80199	broad.mit.edu	37	19	50310483	50310485	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr19:50310483_50310485delCAG	uc002ppq.1	-	11	1285_1287	c.1180_1182delCTG	c.(1180-1182)CTGdel	p.L394del	FUZ_uc002ppr.1_In_Frame_Del_p.L294del|FUZ_uc002pps.1_RNA|FUZ_uc002ppt.1_RNA|FUZ_uc002ppu.1_In_Frame_Del_p.L358del|FUZ_uc002ppv.1_In_Frame_Del_p.L344del	NM_025129	NP_079405	Q9BT04	FUZZY_HUMAN	fuzzy homolog	394	Leu-rich.				cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		TCTGGGGAGACAGCAGCAGCAGC	0.635													8	254	---	---	---	---					
UBXN2A	165324	broad.mit.edu	37	2	24207666	24207666	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:24207666delA	uc010exy.2	+	7	1017	c.549delA	c.(547-549)GGAfs	p.G183fs	UBXN2A_uc002rem.2_RNA|UBXN2A_uc002ren.2_Frame_Shift_Del_p.G183fs|UBXN2A_uc010ykj.1_Intron	NM_181713	NP_859064	P68543	UBX2A_HUMAN	UBX domain containing 4	183	UBX.										0						TGGCCAATGGAAAAAGGATTG	0.299													7	355	---	---	---	---					
C2orf71	388939	broad.mit.edu	37	2	29295647	29295649	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:29295647_29295649delTCC	uc002rmt.1	-	1	1479_1481	c.1479_1481delGGA	c.(1477-1482)GAGGAA>GAA	p.493_494EE>E		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	493_494					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CATTTTGTCTTCCTCCTCCTCCT	0.542													7	603	---	---	---	---					
RGPD1	400966	broad.mit.edu	37	2	87211874	87211875	+	Splice_Site	INS	-	C	C			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:87211874_87211875insC	uc010fgv.2	+	19	2649	c.2582_splice	c.e19-2	p.V861_splice	RMND5A_uc002srs.3_Intron|RGPD1_uc002ssb.2_Splice_Site_p.V850_splice|RGPD1_uc002ssc.2_Splice_Site_p.V118_splice	NM_001024457	NP_001019628	Q68DN6	RGPD1_HUMAN	RANBP2-like and GRIP domain containing 1						intracellular transport		binding				0						tttttttttttAGTTGCAACTA	0.312													15	309	---	---	---	---					
NCKAP5	344148	broad.mit.edu	37	2	133541084	133541084	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:133541084delG	uc002ttp.2	-	14	3674	c.3300delC	c.(3298-3300)CCCfs	p.P1100fs	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1100	Ser-rich.						protein binding				0						AGGAAGGCTTGGGGGGTGTGG	0.502													7	1202	---	---	---	---					
RBM45	129831	broad.mit.edu	37	2	178988920	178988920	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:178988920delA	uc002ulv.2	+	8	1227	c.1135delA	c.(1135-1137)AAAfs	p.K379fs		NM_152945	NP_694453	Q8IUH3	RBM45_HUMAN	RNA binding motif protein 45	381					cell differentiation|nervous system development	cytoplasm|nucleus	nucleotide binding|RNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.00957)|all cancers(119;0.037)			TCCATCATGCAAAAAAAAAGC	0.353													25	302	---	---	---	---					
CREB1	1385	broad.mit.edu	37	2	208440094	208440107	+	Frame_Shift_Del	DEL	CAGCCGGGTACTAC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:208440094_208440107delCAGCCGGGTACTAC	uc002vcc.2	+	7	897_910	c.646_659delCAGCCGGGTACTAC	c.(646-660)CAGCCGGGTACTACCfs	p.Q216fs	CREB1_uc010ziz.1_Frame_Shift_Del_p.Q200fs|CREB1_uc002vcd.2_Frame_Shift_Del_p.Q202fs|CREB1_uc010zja.1_RNA	NM_134442	NP_604391	P16220	CREB1_HUMAN	cAMP responsive element binding protein 1	216_220					activation of phospholipase C activity|axon guidance|innate immune response|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|protein phosphorylation|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway		protein dimerization activity|transcription cofactor activity		EWSR1/CREB1(42)	soft_tissue(42)|breast(1)|central_nervous_system(1)	44				LUSC - Lung squamous cell carcinoma(261;0.0768)|Epithelial(149;0.127)|Lung(261;0.145)	Adenosine monophosphate(DB00131)|Bromocriptine(DB01200)|Naloxone(DB01183)	AGCAGCCACTCAGCCGGGTACTACCATTCTACAG	0.500			T	EWSR1	clear cell sarcoma|angiomatoid fibrous histiocytoma								7	460	---	---	---	---					
GAL3ST2	64090	broad.mit.edu	37	2	242738494	242738496	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr2:242738494_242738496delTCC	uc002wcj.1	+	2	175_177	c.44_46delTCC	c.(43-48)ATCCTC>ATC	p.L20del		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	20	Helical; Signal-anchor for type II membrane protein; (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TTCCGGGTCATCCTCCTCCTCCT	0.631													20	445	---	---	---	---					
KIF3B	9371	broad.mit.edu	37	20	30898763	30898765	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr20:30898763_30898765delGAG	uc002wxq.2	+	2	1350_1352	c.1183_1185delGAG	c.(1183-1185)GAGdel	p.E399del	KIF3B_uc010ztv.1_Intron|KIF3B_uc010ztw.1_Intron	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	399	Poly-Glu.|Potential.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGGTGGggaagaggaggaggagg	0.433													8	148	---	---	---	---					
PRDM15	63977	broad.mit.edu	37	21	43221415	43221417	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr21:43221415_43221417delCTG	uc002yzq.1	-	31	4618_4620	c.4507_4509delCAG	c.(4507-4509)CAGdel	p.Q1503del	PRDM15_uc002yzo.2_In_Frame_Del_p.Q1174del|PRDM15_uc002yzp.2_In_Frame_Del_p.Q1194del|PRDM15_uc002yzr.1_In_Frame_Del_p.Q1194del	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	1503	Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCTGTACATCTGCTGCTGCTGC	0.611													7	352	---	---	---	---					
MED15	51586	broad.mit.edu	37	22	20918765	20918767	+	In_Frame_Del	DEL	GCA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr22:20918765_20918767delGCA	uc002zsp.2	+	6	560_562	c.480_482delGCA	c.(478-483)CTGCAG>CTG	p.Q168del	MED15_uc002zsn.1_In_Frame_Del_p.Q87del|MED15_uc002zso.2_In_Frame_Del_p.Q97del|MED15_uc002zsq.2_In_Frame_Del_p.Q168del|MED15_uc010gso.2_In_Frame_Del_p.Q168del|MED15_uc002zsr.2_In_Frame_Del_p.Q142del|MED15_uc011ahs.1_In_Frame_Del_p.Q142del|MED15_uc011aht.1_In_Frame_Del_p.Q142del|MED15_uc002zss.2_In_Frame_Del_p.Q87del|MED15_uc011ahu.1_5'Flank	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	168	Poly-Gln.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			AGGTGGCGCTgcagcagcagcag	0.300											OREG0026319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	169	---	---	---	---					
MYH9	4627	broad.mit.edu	37	22	36689419	36689421	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr22:36689419_36689421delCCT	uc003apg.2	-	30	4280_4282	c.4049_4051delAGG	c.(4048-4053)GAGGCC>GCC	p.E1350del		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1350	Potential.			E -> EE (in Ref. 7).	actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TTGTGCTTGGCCTCCTCCTCCTC	0.650			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				8	311	---	---	---	---					
RANGAP1	5905	broad.mit.edu	37	22	41650469	41650471	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr22:41650469_41650471delTCC	uc003azs.2	-	10	2571_2573	c.1101_1103delGGA	c.(1099-1104)GAGGAA>GAA	p.367_368EE>E	RANGAP1_uc003azt.2_In_Frame_Del_p.367_368EE>E|RANGAP1_uc003azu.2_In_Frame_Del_p.367_368EE>E|RANGAP1_uc003azr.2_5'Flank|RANGAP1_uc010gyk.2_5'Flank|RANGAP1_uc011aoz.1_In_Frame_Del_p.312_313EE>E	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	367_368	Asp/Glu-rich (highly acidic).|Asp/Glu-rich (highly acidic).				mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						ctcttctccttcctcctcctcct	0.266													19	326	---	---	---	---					
ZC3H7B	23264	broad.mit.edu	37	22	41753399	41753401	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr22:41753399_41753401delCTG	uc003azw.2	+	23	3116_3118	c.2900_2902delCTG	c.(2899-2904)CCTGCT>CCT	p.A971del	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	987	Poly-Ala.				interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CCAGAAGCCCCTGCTGCTGCTGC	0.650													8	558	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610573	42610575	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr22:42610573_42610575delAGG	uc003bcj.1	-	1	871_873	c.737_739delCCT	c.(736-741)TCCTTC>TTC	p.S246del	TCF20_uc003bck.1_In_Frame_Del_p.S246del|TCF20_uc003bnt.2_In_Frame_Del_p.S246del	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	246	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GGTGAAGGGAaggaggaggagga	0.438													10	310	---	---	---	---					
TATDN2	9797	broad.mit.edu	37	3	10291121	10291123	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:10291121_10291123delCTC	uc003bvg.2	+	2	818_820	c.237_239delCTC	c.(235-240)AACTCC>AAC	p.S83del	TATDN2_uc003bvf.2_In_Frame_Del_p.S83del|TATDN2_uc011atr.1_In_Frame_Del_p.S83del|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	83						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						GCAGAAATAACTCCTCCTCCTCC	0.635													7	879	---	---	---	---					
TMEM40	55287	broad.mit.edu	37	3	12790198	12790200	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:12790198_12790200delGAG	uc003bxg.1	-	3	292_294	c.165_167delCTC	c.(163-168)TCCTCT>TCT	p.55_56SS>S	TMEM40_uc003bxh.1_In_Frame_Del_p.55_56SS>S|TMEM40_uc003bxi.1_Intron|TMEM40_uc011auv.1_In_Frame_Del_p.71_72SS>S	NM_018306	NP_060776	Q8WWA1	TMM40_HUMAN	transmembrane protein 40	55_56	Ser-rich.					integral to membrane					0						tgaggaggaagaggaggaggagg	0.256													8	595	---	---	---	---					
PDCD6IP	10015	broad.mit.edu	37	3	33866811	33866811	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:33866811delT	uc003cfx.2	+	5	750	c.595delT	c.(595-597)TTTfs	p.F199fs	PDCD6IP_uc011axv.1_Frame_Shift_Del_p.F199fs|PDCD6IP_uc003cfy.2_Frame_Shift_Del_p.F199fs	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	programmed cell death 6 interacting protein	199	Interaction with EIAV p9.|Interaction with CHMP4A, CHMP4B and CHMP4C.|BRO1.			F->D: Abolishes interaction with CHMP4B and abolishes rescue of PTAP-type L domain-deficient HIV-1 p6.	apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			ovary(1)|skin(1)	2						TCAAGAAGTATTTTTTTTAAA	0.368													7	327	---	---	---	---					
NKTR	4820	broad.mit.edu	37	3	42680269	42680271	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:42680269_42680271delGAG	uc003clo.2	+	13	3220_3222	c.3073_3075delGAG	c.(3073-3075)GAGdel	p.E1029del	NKTR_uc003clm.1_In_Frame_Del_p.E776del|NKTR_uc003clp.2_In_Frame_Del_p.E776del|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_In_Frame_Del_p.E919del|NKTR_uc003clr.1_In_Frame_Del_p.E776del|NKTR_uc003cls.2_In_Frame_Del_p.E729del	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	1029					protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		ATTTGGTGAAGAGGAGGAGGAGG	0.355													7	306	---	---	---	---					
CACNA1D	776	broad.mit.edu	37	3	53529193	53529195	+	Translation_Start_Site	DEL	GAT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:53529193_53529195delGAT	uc003dgv.3	+	1					CACNA1D_uc003dgu.3_Translation_Start_Site|CACNA1D_uc003dgy.3_Translation_Start_Site	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,						axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	aatgttcgtGgatgatgatgatg	0.246													11	404	---	---	---	---					
LRIG1	26018	broad.mit.edu	37	3	66436625	66436627	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:66436625_66436627delGCT	uc003dmx.2	-	13	1581_1583	c.1567_1569delAGC	c.(1567-1569)AGCdel	p.S524del	SLC25A26_uc011bft.1_RNA|LRIG1_uc011bfu.1_In_Frame_Del_p.S144del|LRIG1_uc003dmw.2_In_Frame_Del_p.S190del|LRIG1_uc010hnz.2_In_Frame_Del_p.S240del|LRIG1_uc010hoa.2_In_Frame_Del_p.S548del	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	524	Extracellular (Potential).|Ig-like C2-type 1.|Poly-Ser.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		TCATGGGGGAGCTGCTGCTGCTG	0.547													8	1012	---	---	---	---					
VGLL3	389136	broad.mit.edu	37	3	87027857	87027859	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:87027857_87027859delCTC	uc003dqn.2	-	2	584_586	c.220_222delGAG	c.(220-222)GAGdel	p.E74del		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	74					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GCTGGtctttctcctcctcctcc	0.394													8	125	---	---	---	---					
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:100148586_100148588delGAT	uc003dtx.3	+	2	1293_1295	c.13_15delGAT	c.(13-15)GATdel	p.D10del	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	10	Poly-Asp.										0						GGAGCACAAAGATGATGATGATG	0.507													7	975	---	---	---	---					
TMCC1	23023	broad.mit.edu	37	3	129370576	129370578	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:129370576_129370578delCTG	uc003emz.3	-	7	2209_2211	c.1708_1710delCAG	c.(1708-1710)CAGdel	p.Q570del	TMCC1_uc003emy.3_In_Frame_Del_p.Q246del|TMCC1_uc011blc.1_In_Frame_Del_p.Q391del|TMCC1_uc010htg.2_In_Frame_Del_p.Q456del	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	570	Potential.					integral to membrane				skin(1)	1						GCTGCACCACCTGCTGCTGCTGC	0.581													15	303	---	---	---	---					
TRIM59	286827	broad.mit.edu	37	3	160156367	160156368	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr3:160156367_160156368insT	uc003fdm.2	-	3	799_800	c.604_605insA	c.(604-606)AGTfs	p.S202fs	IFT80_uc003fda.2_RNA	NM_173084	NP_775107	Q8IWR1	TRI59_HUMAN	tripartite motif-containing 59	202	Potential.					integral to membrane|intracellular	zinc ion binding				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			CGTTAGGAAACTTTTTTTTTTC	0.342													8	201	---	---	---	---					
CXXC4	80319	broad.mit.edu	37	4	105412094	105412096	+	In_Frame_Del	DEL	GAG	-	-	rs146939312		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:105412094_105412096delGAG	uc003hxg.2	-	1	372_374	c.357_359delCTC	c.(355-360)TCCTCG>TCG	p.119_120SS>S	uc003hxh.1_5'Flank|CXXC4_uc010ilo.2_Intron	NM_025212	NP_079488	Q9H2H0	CXXC4_HUMAN	CXXC finger 4	119_120	Poly-Ser.				negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway|zygotic specification of dorsal/ventral axis		DNA binding|PDZ domain binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;3.05e-08)		TGAGGAGGACGAGGAGGAGGAGG	0.606													7	272	---	---	---	---					
NPNT	255743	broad.mit.edu	37	4	106863682	106863684	+	In_Frame_Del	DEL	CCA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:106863682_106863684delCCA	uc003hya.2	+	8	1187_1189	c.982_984delCCA	c.(982-984)CCAdel	p.P333del	NPNT_uc011cfc.1_In_Frame_Del_p.P350del|NPNT_uc011cfd.1_In_Frame_Del_p.P363del|NPNT_uc011cfe.1_In_Frame_Del_p.P363del|NPNT_uc010ilt.1_In_Frame_Del_p.P333del|NPNT_uc011cff.1_In_Frame_Del_p.P333del|NPNT_uc010ilu.1_In_Frame_Del_p.P229del	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	333	Pro-rich.				cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		AATTCCTACTCCACCACCACCAC	0.522													9	325	---	---	---	---					
RRH	10692	broad.mit.edu	37	4	110756541	110756541	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:110756541delT	uc003hzv.2	+	3	351	c.317delT	c.(316-318)ATTfs	p.I106fs		NM_006583	NP_006574	O14718	OPSX_HUMAN	peropsin	106	Helical; Name=3; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00109)		GGATTGAATATTTTTTTTGGA	0.393													7	335	---	---	---	---					
ZNF827	152485	broad.mit.edu	37	4	146823381	146823383	+	In_Frame_Del	DEL	GTG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:146823381_146823383delGTG	uc003ikn.2	-	2	1076_1078	c.1028_1030delCAC	c.(1027-1032)CCACAA>CAA	p.P343del	ZNF827_uc003ikm.2_In_Frame_Del_p.P343del|ZNF827_uc010iox.2_Intron	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	343	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TCCAGGGATTgtggtggtggtgg	0.350													8	161	---	---	---	---					
DDX60	55601	broad.mit.edu	37	4	169182016	169182016	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:169182016delA	uc003irp.2	-	25	3690	c.3398delT	c.(3397-3399)TTAfs	p.L1133fs		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1133							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AATAACTTACAAAAAAAATAG	0.254													7	264	---	---	---	---					
HMGB2	3148	broad.mit.edu	37	4	174253277	174253279	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr4:174253277_174253279delTCC	uc011ckc.1	-	4	702_704	c.582_584delGGA	c.(580-585)GAGGAA>GAA	p.194_195EE>E	HMGB2_uc003ita.3_In_Frame_Del_p.194_195EE>E|HMGB2_uc003itb.2_In_Frame_Del_p.194_195EE>E|HMGB2_uc003itc.2_3'UTR	NM_001130689	NP_001124161	P26583	HMGB2_HUMAN	high-mobility group box 2	194_195	Asp/Glu-rich (acidic).				base-excision repair, DNA ligation|cell chemotaxis|cellular response to lipopolysaccharide|DNA fragmentation involved in apoptotic nuclear change|DNA topological change|negative regulation of transcription, DNA-dependent|nucleosome assembly|phosphatidylinositol-mediated signaling|positive regulation of DNA binding|positive regulation of endothelial cell proliferation|positive regulation of erythrocyte differentiation|positive regulation of megakaryocyte differentiation|positive regulation of nuclease activity|positive regulation of transcription from RNA polymerase II promoter|V(D)J recombination	condensed chromosome|extracellular space|nucleolus|nucleoplasm|perinuclear region of cytoplasm|protein complex	chemoattractant activity|damaged DNA binding|DNA bending activity|double-stranded DNA binding|RAGE receptor binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding|transcription regulatory region DNA binding				0		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;9.58e-18)|Epithelial(43;3.75e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.24e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		atcttcttcttcctcctcctcct	0.286													8	311	---	---	---	---					
ZNF608	57507	broad.mit.edu	37	5	124079813	124079815	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:124079813_124079815delCTC	uc003ktq.1	-	1	991_993	c.868_870delGAG	c.(868-870)GAGdel	p.E290del	ZNF608_uc003ktr.1_RNA|ZNF608_uc003kts.1_In_Frame_Del_p.E290del|ZNF608_uc003ktt.1_In_Frame_Del_p.E290del	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	290	Potential.					intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		GCCTGTGGCTCTCCTCCTCCTCC	0.522													12	768	---	---	---	---					
CPLX2	10814	broad.mit.edu	37	5	175306965	175306967	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr5:175306965_175306967delGAG	uc003mde.1	+	5	668_670	c.322_324delGAG	c.(322-324)GAGdel	p.E114del	CPLX2_uc003mdf.1_In_Frame_Del_p.E114del	NM_006650	NP_006641	Q6PUV4	CPLX2_HUMAN	complexin 2	114					mast cell degranulation|positive regulation of synaptic plasticity|vesicle docking involved in exocytosis	cytosol				ovary(1)	1	all_cancers(89;0.004)|Renal(175;0.000269)|Lung NSC(126;0.00441)|all_lung(126;0.00747)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CTGCGGGGACGAGGAGGAGGAGG	0.645													8	134	---	---	---	---					
GABBR1	2550	broad.mit.edu	37	6	29573436	29573438	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:29573436_29573438delCAG	uc003nmt.3	-	20	2683_2685	c.2347_2349delCTG	c.(2347-2349)CTGdel	p.L783del	GABBR1_uc003nmp.3_In_Frame_Del_p.L666del|GABBR1_uc003nms.3_In_Frame_Del_p.L666del|GABBR1_uc003nmu.3_In_Frame_Del_p.L721del|GABBR1_uc011dlr.1_In_Frame_Del_p.L606del	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	783	Helical; Name=5; (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	GGAAGATTCCCAGCAGCAGCAGC	0.512													7	386	---	---	---	---					
GABBR1	2550	broad.mit.edu	37	6	29599254	29599254	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:29599254delC	uc003nmt.3	-	3	544	c.208delG	c.(208-210)GAGfs	p.E70fs	GABBR1_uc003nmu.3_Frame_Shift_Del_p.E70fs|GABBR1_uc011dlr.1_5'UTR|GABBR1_uc011dls.1_Frame_Shift_Del_p.E70fs	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	70	Sushi 1.|Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	ACCTCGCGCTCCCCCCGGCAC	0.632													7	629	---	---	---	---					
TREML2	79865	broad.mit.edu	37	6	41168714	41168716	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:41168714_41168716delCAG	uc010jxm.1	-	1	210_212	c.31_33delCTG	c.(31-33)CTGdel	p.L11del		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	11					T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCTGTGGCCACAGCAGCAGCAGC	0.631													14	146	---	---	---	---					
C6orf153	88745	broad.mit.edu	37	6	42989434	42989451	+	In_Frame_Del	DEL	CGGGGCCCGACGTCCCCG	-	-	rs60664426		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:42989434_42989451delCGGGGCCCGACGTCCCCG	uc003otp.1	+	1	50_67	c.42_59delCGGGGCCCGACGTCCCCG	c.(40-60)GCCGGGGCCCGACGTCCCCGC>GCC	p.GARRPR15del		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	15_20					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			gggccggggccggggcccgacgtccccgcggggcccgg	0.550													7	14	---	---	---	---					
KIAA1009	22832	broad.mit.edu	37	6	84896233	84896233	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:84896233delA	uc010kbp.2	-	12	1315	c.1218delT	c.(1216-1218)TTTfs	p.F406fs	KIAA1009_uc003pkj.3_Frame_Shift_Del_p.F330fs|KIAA1009_uc003pkk.2_Frame_Shift_Del_p.F406fs|KIAA1009_uc003pki.3_5'UTR	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	406					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		CATTTTTGTCAAAAAAAAGGT	0.358													14	478	---	---	---	---					
HTR1E	3354	broad.mit.edu	37	6	87725847	87725847	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:87725847delC	uc003pli.2	+	2	1498	c.795delC	c.(793-795)ATCfs	p.I265fs		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	265	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CCATCAGGATCCCCCCCTTCG	0.512													8	839	---	---	---	---					
EPB41L2	2037	broad.mit.edu	37	6	131191073	131191075	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:131191073_131191075delCTG	uc003qch.2	-	15	2417_2419	c.2235_2237delCAG	c.(2233-2238)AGCAGT>AGT	p.745_746SS>S	EPB41L2_uc003qce.1_In_Frame_Del_p.123_124SS>S|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_In_Frame_Del_p.675_676SS>S|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_In_Frame_Del_p.675_676SS>S|EPB41L2_uc003qcd.1_5'Flank|EPB41L2_uc003qcj.1_In_Frame_Del_p.142_143SS>S	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	745_746					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CTCACTCTCACTGCTGCTGCTGC	0.562													9	344	---	---	---	---					
HECA	51696	broad.mit.edu	37	6	139488147	139488147	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:139488147delG	uc003qin.2	+	2	1283	c.998delG	c.(997-999)AGGfs	p.R333fs		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	333					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		GCAGTTCACAGGGGGGGACAC	0.587													8	403	---	---	---	---					
GRM1	2911	broad.mit.edu	37	6	146755399	146755401	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:146755399_146755401delCAG	uc010khw.1	+	9	3522_3524	c.3052_3054delCAG	c.(3052-3054)CAGdel	p.Q1022del	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1022	Gln/Pro-rich.|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCCTCCTCTCCAGCAGCAGCAGC	0.660													8	613	---	---	---	---					
GRM1	2911	broad.mit.edu	37	6	146755630	146755632	+	In_Frame_Del	DEL	GAC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:146755630_146755632delGAC	uc010khw.1	+	9	3753_3755	c.3283_3285delGAC	c.(3283-3285)GACdel	p.D1099del	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1099	Asp/Glu-rich (acidic).|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCCGCCCGCGGACGACGACGACG	0.650													8	447	---	---	---	---					
SYNE1	23345	broad.mit.edu	37	6	152673182	152673183	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr6:152673182_152673183insT	uc010kiw.2	-	70	12161_12162	c.11559_11560insA	c.(11557-11562)AAAGCTfs	p.K3853fs	SYNE1_uc003qot.3_Frame_Shift_Ins_p.K3838fs|SYNE1_uc003qou.3_Frame_Shift_Ins_p.K3853fs|SYNE1_uc010kja.1_Frame_Shift_Ins_p.K558fs	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3853_3854	Cytoplasmic (Potential).|Spectrin 9.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GATAACTGAGCTTTTTTCTCAT	0.401										HNSCC(10;0.0054)			8	203	---	---	---	---					
HOXA1	3198	broad.mit.edu	37	7	27135314	27135316	+	In_Frame_Del	DEL	CGA	-	-	rs10951154	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:27135314_27135316delCGA	uc003sye.2	-	1	310_312	c.216_218delTCG	c.(214-219)CATCAC>CAC	p.72_73HH>H	HOXA1_uc003syd.2_In_Frame_Del_p.72_73HH>H|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	72_73	Poly-His.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						Ctgggggtggcgatggtggtggt	0.527											OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	11	208	---	---	---	---					
POU6F2	11281	broad.mit.edu	37	7	39379288	39379290	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:39379288_39379290delCAG	uc003thb.1	+	5	601_603	c.559_561delCAG	c.(559-561)CAGdel	p.Q196del	POU6F2_uc010kxo.2_In_Frame_Del_p.Q188del	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	196	Gln-rich.			Q -> QQ (in Ref. 1; AAB49727/AAB49728).	central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						gctccagctccagcagcagcagc	0.365													9	102	---	---	---	---					
INHBA	3624	broad.mit.edu	37	7	41729741	41729743	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:41729741_41729743delTTC	uc003thq.2	-	2	1021_1023	c.786_788delGAA	c.(784-789)AAGAAA>AAA	p.262_263KK>K	INHBA_uc003thr.2_In_Frame_Del_p.262_263KK>K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	262_263					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						ctcctcttctttcttcttcttct	0.355										TSP Lung(11;0.080)			8	129	---	---	---	---					
DTX2	113878	broad.mit.edu	37	7	76112249	76112249	+	Frame_Shift_Del	DEL	A	-	-	rs147779783	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:76112249delA	uc003uff.3	+	5	1249	c.693delA	c.(691-693)CCAfs	p.P231fs	DTX2_uc011kgk.1_Frame_Shift_Del_p.P140fs|DTX2_uc003ufg.3_Frame_Shift_Del_p.P231fs|DTX2_uc003ufh.3_Frame_Shift_Del_p.P231fs|DTX2_uc003ufj.3_Frame_Shift_Del_p.P231fs	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	231					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						AGCACCCCCCACACAGGACCG	0.657													8	1115	---	---	---	---					
C7orf63	79846	broad.mit.edu	37	7	89929188	89929188	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:89929188delA	uc010lep.2	+	17	2116	c.1865delA	c.(1864-1866)CAAfs	p.Q622fs	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_Frame_Shift_Del_p.Q297fs|C7orf63_uc011khj.1_Frame_Shift_Del_p.Q604fs|C7orf63_uc011khk.1_Frame_Shift_Del_p.Q184fs	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	622							binding			ovary(1)	1						AAGTTGAACCAAAAAAAATTC	0.303													7	98	---	---	---	---					
CYP51A1	1595	broad.mit.edu	37	7	91752494	91752494	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:91752494delT	uc003ulm.3	-	7	1188	c.1026delA	c.(1024-1026)AAAfs	p.K342fs	CYP51A1_uc011khn.1_Frame_Shift_Del_p.K237fs|CYP51A1_uc003uln.3_Frame_Shift_Del_p.K279fs	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	336					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	CTAAATAACATTTTTTTTGAA	0.398													9	564	---	---	---	---					
VGF	7425	broad.mit.edu	37	7	100806641	100806642	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:100806641_100806642insG	uc003uxx.3	-	2	1701_1702	c.1483_1484insC	c.(1483-1485)CGTfs	p.R495fs		NM_003378	NP_003369	O15240	VGF_HUMAN	VGF nerve growth factor inducible precursor	495					response to cAMP	extracellular space|transport vesicle	growth factor activity				0	Lung NSC(181;0.168)|all_lung(186;0.215)					gggggcggCACGGGGGGGCGGC	0.475													8	104	---	---	---	---					
PUS7	54517	broad.mit.edu	37	7	105122810	105122810	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:105122810delT	uc003vcx.2	-	8	1217	c.998delA	c.(997-999)AACfs	p.N333fs	PUS7_uc010lji.2_Frame_Shift_Del_p.N339fs|PUS7_uc003vcy.2_Frame_Shift_Del_p.N333fs|PUS7_uc003vcz.1_Frame_Shift_Del_p.N333fs	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	333					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						TTTCAGTGGGTTTTTTTGATA	0.398													7	794	---	---	---	---					
PODXL	5420	broad.mit.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	GGCGAC	GGCGAC	rs148320201	by1000genomes	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:131241029_131241030insGGCGAC	uc003vqw.3	-	1	347_348	c.89_90insGTCGCC	c.(88-90)CCC>CCGTCGCCC	p.30_30P>PSP	PODXL_uc003vqx.3_In_Frame_Ins_p.30_30P>PSP	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	30	Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					CATTCTGGGAGggcgacggcga	0.574													7	17	---	---	---	---					
ZC3HAV1	56829	broad.mit.edu	37	7	138774379	138774379	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:138774379delA	uc003vun.2	-	2	823	c.435delT	c.(433-435)TTTfs	p.F145fs	ZC3HAV1_uc003vup.2_Frame_Shift_Del_p.F145fs	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	145					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						CCTCGGGCATAAAAAAAGGAT	0.403													7	376	---	---	---	---					
RBM33	155435	broad.mit.edu	37	7	155531073	155531074	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr7:155531073_155531074delCA	uc010lqk.1	+	11	2081_2082	c.1713_1714delCA	c.(1711-1716)CCCACAfs	p.P571fs	RBM33_uc011kvv.1_Frame_Shift_Del_p.P380fs	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	571_572	Pro-rich.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		CGTTTCTGCCCACACACACACA	0.530													8	284	---	---	---	---					
RP1L1	94137	broad.mit.edu	37	8	10480104	10480104	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:10480104delT	uc003wtc.2	-	2	837	c.608delA	c.(607-609)AAGfs	p.K203fs		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	203					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACAGCCTACCTTTTTCCCGCT	0.483													9	752	---	---	---	---					
DLC1	10395	broad.mit.edu	37	8	12957611	12957613	+	In_Frame_Del	DEL	GCT	-	-	rs137989738		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:12957611_12957613delGCT	uc003wwm.2	-	9	2677_2679	c.2233_2235delAGC	c.(2233-2235)AGCdel	p.S745del	DLC1_uc003wwk.1_In_Frame_Del_p.S308del|DLC1_uc003wwl.1_In_Frame_Del_p.S342del|DLC1_uc011kxx.1_In_Frame_Del_p.S234del	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	745	Poly-Ser.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TCTCCGACTGGCTGCTGCTGCTG	0.621													7	218	---	---	---	---					
KIAA1967	57805	broad.mit.edu	37	8	22476369	22476369	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:22476369delA	uc003xch.2	+	19	2499	c.2362delA	c.(2362-2364)AAAfs	p.K788fs	KIAA1967_uc003xci.2_Frame_Shift_Del_p.K788fs|KIAA1967_uc003xcj.1_Frame_Shift_Del_p.K457fs	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	788					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CCCTCCTGGGAAAAGCACGAA	0.607													7	755	---	---	---	---					
ZNF704	619279	broad.mit.edu	37	8	81733778	81733778	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:81733778delT	uc003yby.1	-	2	284	c.52delA	c.(52-54)ATGfs	p.M18fs		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	18						intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			TGATGAGACATTTTTTTACCA	0.423													7	1071	---	---	---	---					
PKHD1L1	93035	broad.mit.edu	37	8	110455173	110455174	+	Splice_Site	INS	-	G	G			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:110455173_110455174insG	uc003yne.2	+	36	4498	c.4394_splice	c.e36-1	p.G1465_splice		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor						immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATTTTATGGCAGGTTCATTTTC	0.322										HNSCC(38;0.096)			9	294	---	---	---	---					
KCNQ3	3786	broad.mit.edu	37	8	133150233	133150233	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:133150233delT	uc003ytj.2	-	12	1824	c.1599delA	c.(1597-1599)AAAfs	p.K533fs	KCNQ3_uc010mdt.2_Frame_Shift_Del_p.K533fs	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	533					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TCTCCTTGAATTTTTTTTTAT	0.453													12	508	---	---	---	---					
TSNARE1	203062	broad.mit.edu	37	8	143310866	143310868	+	In_Frame_Del	DEL	GAT	-	-	rs142964918		TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:143310866_143310868delGAT	uc003ywk.2	-	13	1637_1639	c.1519_1521delATC	c.(1519-1521)ATCdel	p.I507del	TSNARE1_uc011lju.1_In_Frame_Del_p.I506del|TSNARE1_uc003ywj.2_In_Frame_Del_p.I508del	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	507	Poly-Ile.|Helical; (Potential).				vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CAGAGGTGGCGATGATGATGATG	0.414													11	360	---	---	---	---					
GRINA	2907	broad.mit.edu	37	8	145066170	145066172	+	In_Frame_Del	DEL	TCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr8:145066170_145066172delTCT	uc003zan.1	+	4	783_785	c.617_619delTCT	c.(616-621)GTCTTC>GTC	p.F208del	GRINA_uc003zao.1_In_Frame_Del_p.F208del|GRINA_uc003zap.1_In_Frame_Del_p.F208del	NM_001009184	NP_001009184	Q7Z429	GRINA_HUMAN	glutamate receptor, ionotropic, N-methyl	208	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCCTATGCTGTCTTCTTCATCTC	0.547													14	592	---	---	---	---					
KANK1	23189	broad.mit.edu	37	9	732475	732477	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr9:732475_732477delGAG	uc003zgl.1	+	10	3752_3754	c.3103_3105delGAG	c.(3103-3105)GAGdel	p.E1039del	KANK1_uc003zgm.2_3'UTR|KANK1_uc003zgn.1_In_Frame_Del_p.E1039del|KANK1_uc003zgs.1_In_Frame_Del_p.E881del|KANK1_uc010mgx.1_5'UTR|KANK1_uc010mgy.1_5'UTR|KANK1_uc003zgt.1_5'Flank	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	1039					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		TCTTGAAGAAGAGGAGGAGGAGG	0.463													9	504	---	---	---	---					
KGFLP2	654466	broad.mit.edu	37	9	41962602	41962602	+	RNA	DEL	G	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr9:41962602delG	uc004aca.3	-	3		c.907delC				NR_003670				Homo sapiens cDNA FLJ76381 complete cds.												0						TTCTTTCTTTGTTTTTTTTCC	0.373													12	236	---	---	---	---					
ECM2	1842	broad.mit.edu	37	9	95277146	95277148	+	In_Frame_Del	DEL	TCC	-	-	rs137929518	byFrequency	TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chr9:95277146_95277148delTCC	uc004ash.2	-	4	884_886	c.819_821delGGA	c.(817-822)GAGGAT>GAT	p.E273del	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_In_Frame_Del_p.E251del|ECM2_uc011lty.1_In_Frame_Del_p.E273del|ECM2_uc004asg.2_In_Frame_Del_p.E251del	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	273	Poly-Glu.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						ctcctcctcatcctcctcctcct	0.399													13	362	---	---	---	---					
CNKSR2	22866	broad.mit.edu	37	X	21627678	21627680	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:21627678_21627680delGAG	uc004czx.1	+	20	2671_2673	c.2635_2637delGAG	c.(2635-2637)GAGdel	p.E886del	CNKSR2_uc004czw.2_In_Frame_Del_p.E886del|CNKSR2_uc011mjn.1_In_Frame_Del_p.E837del|CNKSR2_uc011mjo.1_In_Frame_Del_p.E856del|CNKSR2_uc004czy.2_In_Frame_Del_p.E478del	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	886	Potential.|Poly-Glu.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						ggtggaggaagaggaggaggagg	0.379													10	205	---	---	---	---					
MED12	9968	broad.mit.edu	37	X	70360648	70360650	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:70360648_70360650delCAG	uc004dyy.2	+	42	6407_6409	c.6208_6210delCAG	c.(6208-6210)CAGdel	p.Q2076del	MED12_uc004dyz.2_In_Frame_Del_p.Q2075del|MED12_uc004dza.2_In_Frame_Del_p.Q1926del|MED12_uc010nla.2_In_Frame_Del_p.Q705del	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	2076	Gln-rich.				androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					gcaacagcaacagcagcagcagc	0.291													7	152	---	---	---	---					
SYTL4	94121	broad.mit.edu	37	X	99943418	99943420	+	In_Frame_Del	DEL	TCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:99943418_99943420delTCT	uc004egd.3	-	12	1289_1291	c.933_935delAGA	c.(931-936)GAAGAC>GAC	p.E311del	SYTL4_uc010nnb.2_5'UTR|SYTL4_uc010nnc.2_In_Frame_Del_p.E311del|SYTL4_uc004ege.3_In_Frame_Del_p.E311del|SYTL4_uc004egf.3_In_Frame_Del_p.E311del|SYTL4_uc004egg.3_In_Frame_Del_p.E311del	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	311	Poly-Glu.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTGGTCAATGtcttcttcttctt	0.330													7	172	---	---	---	---					
MIR1277	100302214	broad.mit.edu	37	X	117520366	117520367	+	RNA	DEL	AT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:117520366_117520367delAT	hsa-mir-1277|MI0006419	+			c.10_11delAT			WDR44_uc004eqn.2_Intron|WDR44_uc004eqo.2_Intron|WDR44_uc011mtr.1_Intron																	0						AACCTCCCAAatatatatatat	0.203													25	287	---	---	---	---					
CUL4B	8450	broad.mit.edu	37	X	119694117	119694119	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:119694117_119694119delGAG	uc004esw.2	-	3	866_868	c.429_431delCTC	c.(427-432)TCCTCA>TCA	p.143_144SS>S	CUL4B_uc004esv.2_In_Frame_Del_p.125_126SS>S	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	143_144	Ser-rich.				cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TGGTGAAGATgaggaggaggagg	0.424													9	222	---	---	---	---					
MAP7D3	79649	broad.mit.edu	37	X	135314194	135314194	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:135314194delG	uc004ezt.2	-	8	1013	c.922delC	c.(922-924)CAGfs	p.Q308fs	MAP7D3_uc004ezs.2_Frame_Shift_Del_p.Q272fs|MAP7D3_uc011mwc.1_Frame_Shift_Del_p.Q290fs|MAP7D3_uc010nsa.1_Frame_Shift_Del_p.Q266fs	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	308						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					ACATTCACCTGGGGGGGTGCA	0.532													8	1115	---	---	---	---					
HTATSF1	27336	broad.mit.edu	37	X	135585048	135585050	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:135585048_135585050delAAG	uc004ezw.2	+	6	1104_1106	c.682_684delAAG	c.(682-684)AAGdel	p.K232del	HTATSF1_uc004ezx.2_In_Frame_Del_p.K232del	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	232	Poly-Lys.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGATGCCTCAAAGAAGAAGAAGA	0.335													8	494	---	---	---	---					
MAGEC1	9947	broad.mit.edu	37	X	140994939	140994940	+	In_Frame_Ins	INS	-	CCT	CCT			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:140994939_140994940insCCT	uc004fbt.2	+	4	2035_2036	c.1749_1750insCCT	c.(1747-1752)insCCT	p.584_585insP	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	584_585							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCTCAGAGCCCTCAGGGGGA	0.584										HNSCC(15;0.026)			10	2000	---	---	---	---					
HMGB3	3149	broad.mit.edu	37	X	150156358	150156360	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:150156358_150156360delGAG	uc004fep.2	+	5	666_668	c.574_576delGAG	c.(574-576)GAGdel	p.E198del	HMGB3_uc004feq.2_3'UTR|HMGB3_uc004fer.2_In_Frame_Del_p.E198del	NM_005342	NP_005333	O15347	HMGB3_HUMAN	high-mobility group box 3	198	Asp/Glu-rich (acidic).				DNA recombination|multicellular organismal development	chromosome|nucleus	DNA bending activity|double-stranded DNA binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					ggaggaagaagaggaggaggagg	0.281													7	222	---	---	---	---					
PASD1	139135	broad.mit.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:150817142_150817144delGCT	uc004fev.3	+	9	1017_1019	c.685_687delGCT	c.(685-687)GCTdel	p.A236del		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	236	Poly-Ala.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGTTGAACCCgctgctgctgctg	0.355													9	479	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7645-01A-22D-2201-08	TCGA-IB-7645-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	4b74b488-3cd3-4671-96b6-80e55d4f6d42	ff33181b-4653-4048-b933-5153a016c9c5	g.chrX:152087570_152087572delGAG	uc010ntv.1	+	7	512_514	c.475_477delGAG	c.(475-477)GAGdel	p.E165del	ZNF185_uc011myg.1_In_Frame_Del_p.E165del|ZNF185_uc011myh.1_In_Frame_Del_p.E165del|ZNF185_uc011myi.1_In_Frame_Del_p.E165del|ZNF185_uc011myj.1_In_Frame_Del_p.E165del|ZNF185_uc011myk.1_In_Frame_Del_p.E165del|ZNF185_uc004fgw.3_In_Frame_Del_p.E30del|ZNF185_uc004fgu.2_5'UTR|ZNF185_uc004fgv.2_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.522													7	116	---	---	---	---					
