Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CORT	1325	broad.mit.edu	37	1	10510304	10510304	+	Silent	SNP	G	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:10510304G>C	uc001ari.2	+	1	334	c.174G>C	c.(172-174)CTG>CTC	p.L58L	APITD1_uc001arf.2_Intron|APITD1_uc001arg.2_Intron	NM_001302	NP_001293	O00230	CORT_HUMAN	cortistatin preproprotein	8					inhibition of adenylate cyclase activity by G-protein signaling pathway|synaptic transmission	extracellular region|soluble fraction	G-protein-coupled receptor binding|neuropeptide hormone activity				0	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0487)		CCGGCCTCCTGCTGCTGCTGC	0.662000													3	170					0	0	0.004672	0	0
PTPRU	10076	broad.mit.edu	37	1	29630460	29630460	+	Missense_Mutation	SNP	C	T	T	rs146215972		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:29630460C>T	uc001bru.2	+	17	2710	c.2600C>T	c.(2599-2601)ACG>ATG	p.T867M	PTPRU_uc001brv.2_Missense_Mutation_p.T857M|PTPRU_uc001brw.2_Missense_Mutation_p.T857M|PTPRU_uc009vtq.2_Missense_Mutation_p.T857M|PTPRU_uc009vtr.2_Missense_Mutation_p.T857M	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	867	Mediates interaction with CTNNB1 (By similarity).|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		CCATACCACACGGGGCAGCTG	0.662000													7	191					0	0	0.013537	0	0
PTPRU	10076	broad.mit.edu	37	1	29630479	29630479	+	Silent	SNP	G	A	A	rs145675393		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:29630479G>A	uc001bru.2	+	17	2729	c.2619G>A	c.(2617-2619)GCG>GCA	p.A873A	PTPRU_uc001brv.2_Silent_p.A863A|PTPRU_uc001brw.2_Silent_p.A863A|PTPRU_uc009vtq.2_Silent_p.A863A|PTPRU_uc009vtr.2_Silent_p.A863A	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	873	Mediates interaction with CTNNB1 (By similarity).|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		TGCACCCTGCGGTGCGTGTCG	0.687000													7	205					0	0	0.004990	0	0
DOCK7	85440	broad.mit.edu	37	1	63100520	63100520	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:63100520G>A	uc001daq.2	-	9	993	c.959C>T	c.(958-960)GCT>GTT	p.A320V	DOCK7_uc001dan.2_Missense_Mutation_p.A212V|DOCK7_uc001dao.2_Missense_Mutation_p.A212V|DOCK7_uc001dap.2_Missense_Mutation_p.A320V|DOCK7_uc009wah.1_Missense_Mutation_p.A320V	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	320					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						AGTAATGGCAGCAGGTGGTAC	0.313000													6	557					0	0	0.001984	0	0
TGFBR3	7049	broad.mit.edu	37	1	92163683	92163683	+	Silent	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:92163683T>C	uc001doh.2	-	15	2758	c.2292A>G	c.(2290-2292)AAA>AAG	p.K764K	TGFBR3_uc009wde.2_Silent_p.K459K|TGFBR3_uc010osy.1_Silent_p.K722K|TGFBR3_uc001doi.2_Silent_p.K763K|TGFBR3_uc001doj.2_Silent_p.K763K	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	764	Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		TGCTTGGACCTTTTTCTGAAA	0.363000													4	331					0	0	0.000602	0	0
ADORA3	140	broad.mit.edu	37	1	112043018	112043018	+	Missense_Mutation	SNP	C	T	T	rs139935750	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:112043018C>T	uc001ebh.3	-	2	1278	c.511G>A	c.(511-513)GTC>ATC	p.V171I	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Intron	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	171	Extracellular (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	ATTCTCATGACGGAAACAAAT	0.453000													7	499					0	0	0.003080	0	0
HIPK1	204851	broad.mit.edu	37	1	114505006	114505006	+	Silent	SNP	A	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:114505006A>C	uc001eem.2	+	9	2210	c.2049A>C	c.(2047-2049)GTA>GTC	p.V683V	HIPK1_uc001eel.2_Silent_p.V683V|HIPK1_uc001een.2_Silent_p.V683V|HIPK1_uc001eeo.2_Silent_p.V309V|HIPK1_uc001eep.2_Silent_p.V289V|HIPK1_uc001eeq.2_5'Flank	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	683					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACCGATTGTACCCCAGGCAC	0.433000													15	242					0	0	0.004878	0	0
RNF115	27246	broad.mit.edu	37	1	145682086	145682086	+	Silent	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:145682086T>C	uc001eoj.2	+	5	696	c.492T>C	c.(490-492)CCT>CCC	p.P164P	NBPF10_uc001emp.3_Intron|RNF115_uc001eok.2_Silent_p.P131P|RNF115_uc009wiy.2_Silent_p.P83P	NM_014455	NP_055270	Q9Y4L5	RN115_HUMAN	Rabring 7	164					protein autoubiquitination	cytosol	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						CTCCACACCCTTTTTCCTGGT	0.358000													5	448					0	0	0.001984	0	0
GJA5	2702	broad.mit.edu	37	1	147231262	147231262	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:147231262G>A	uc001eps.1	-	2	226	c.85C>T	c.(85-87)CTC>TTC	p.L29F	GJA5_uc001ept.1_Missense_Mutation_p.L29F	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	29	Helical; (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			AATATGAAGAGGACAGTGAGC	0.567000													4	297					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	1	148882025	148882025	+	RNA	SNP	C	T	T	rs150449871	by1000genomes	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:148882025C>T	uc009wkv.1	+	3		c.246C>T								Homo sapiens cDNA, FLJ17483.																		TGTTTTCTAGCAGTGACAAAT	0.343000													4	279					0	0	0.009096	0	0
NPR1	4881	broad.mit.edu	37	1	153661477	153661477	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:153661477G>A	uc001fcs.3	+	16	2887	c.2466G>A	c.(2464-2466)CAG>CAA	p.Q822Q	NPR1_uc010pdz.1_Silent_p.Q568Q|NPR1_uc010pea.1_Silent_p.Q300Q	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	822	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GCATGGAGCAGTACGCGAACA	0.617000													5	574					0	0	0.000602	0	0
DENND4B	9909	broad.mit.edu	37	1	153907309	153907309	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:153907309C>T	uc001fdd.1	-	18	3101	c.2700G>A	c.(2698-2700)CAG>CAA	p.Q900Q	uc001fdc.1_RNA	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	900	Gln-rich.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			gctgctgttgctgctgctgct	0.468000													5	189					0	0	0.001168	0	0
KIAA0907	22889	broad.mit.edu	37	1	155887393	155887393	+	Missense_Mutation	SNP	T	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:155887393T>G	uc001fmi.1	-	11	1361	c.1337A>C	c.(1336-1338)CAG>CCG	p.Q446P	KIAA0907_uc001fmj.1_Missense_Mutation_p.Q446P|KIAA0907_uc009wrk.1_Missense_Mutation_p.Q303P|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	446	Pro-rich.										0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			gggctggggctggggctgggg	0.448000													26	174					0	0	0.014410	0	0
NTRK1	4914	broad.mit.edu	37	1	156849848	156849848	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:156849848C>T	uc001fqh.1	+	16	2160	c.2104C>T	c.(2104-2106)CGT>TGT	p.R702C	NTRK1_uc001fqf.1_Missense_Mutation_p.R666C|NTRK1_uc009wsi.1_Missense_Mutation_p.R401C|NTRK1_uc001fqi.1_Missense_Mutation_p.R696C|NTRK1_uc009wsk.1_Missense_Mutation_p.R699C	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	702	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CATCCTGTACCGTAAGTTCAC	0.637000			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			34	263					0	0	0.012213	0	0
F5	2153	broad.mit.edu	37	1	169510502	169510502	+	Missense_Mutation	SNP	G	T	T	rs140018525	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:169510502G>T	uc001ggg.1	-	13	3971	c.3826C>A	c.(3826-3828)CTT>ATT	p.L1276I		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1276	2-11.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGGAGAAAGGGGCATCTGA	0.502000													6	829					4.36969e-10	4.64436e-10	0.001855	1	0
GLT25D2	23127	broad.mit.edu	37	1	183907970	183907970	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:183907970G>A	uc001gqr.2	-	12	2178	c.1806C>T	c.(1804-1806)TAC>TAT	p.Y602Y	GLT25D2_uc010poj.1_Intron|GLT25D2_uc001gqp.2_Silent_p.Y210Y|GLT25D2_uc001gqq.2_Silent_p.Y339Y|GLT25D2_uc001gqs.2_Silent_p.Y482Y	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	602					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						TGGCATTGCTGTAGATGCGGC	0.587000													5	291					0	0	0.001168	0	0
C10orf18	54906	broad.mit.edu	37	10	5788328	5788328	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr10:5788328G>A	uc001iij.2	+	15	3569	c.2944G>A	c.(2944-2946)GAT>AAT	p.D982N	C10orf18_uc001iik.2_Intron	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	982										ovary(1)|central_nervous_system(1)	2						CAGGACTTACGATGGGCCTGG	0.468000													19	201					0	0	0.010504	0	0
CYP17A1	1586	broad.mit.edu	37	10	104597002	104597002	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr10:104597002G>A	uc001kwg.2	-	1	289	c.117C>T	c.(115-117)AGC>AGT	p.S39S		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	39					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	GGAATGGCAGGCTGCCCACCA	0.532000													4	302					0	0	0.000602	0	0
ZNF215	7762	broad.mit.edu	37	11	6964383	6964383	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:6964383G>A	uc001mey.2	+	5	1141	c.553G>A	c.(553-555)GTA>ATA	p.V185I	ZNF215_uc010raw.1_Intron|ZNF215_uc010rax.1_Intron|ZNF215_uc001mez.1_Missense_Mutation_p.V185I	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	185	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		GGACTCTGCTGTAAAGAACCT	0.393000													5	439					0	0	0.001168	0	0
SWAP70	23075	broad.mit.edu	37	11	9749616	9749616	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:9749616A>G	uc001mhw.2	+	5	758	c.659A>G	c.(658-660)AAG>AGG	p.K220R	SWAP70_uc001mhv.2_Missense_Mutation_p.K220R|SWAP70_uc001mhx.2_Missense_Mutation_p.K162R	NM_015055	NP_055870	Q9UH65	SWP70_HUMAN	SWAP-70 protein	220	PH.					cytoplasm|lamellipodium|nucleus|plasma membrane	calcium ion binding|DNA binding			ovary(2)|central_nervous_system(1)	3				all cancers(16;1.21e-10)|Epithelial(150;2.81e-09)|BRCA - Breast invasive adenocarcinoma(625;0.00649)		ATGATGAAAAAGGGCCACAGA	0.358000													3	167					0	0	0.004672	0	0
MICAL2	9645	broad.mit.edu	37	11	12278458	12278458	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:12278458C>T	uc001mjz.2	+	24	3370	c.3082C>T	c.(3082-3084)CGC>TGC	p.R1028C	MICAL2_uc010rch.1_Missense_Mutation_p.R838C|MICAL2_uc001mka.2_Missense_Mutation_p.R1028C|MICAL2_uc010rci.1_Missense_Mutation_p.R1007C|MICAL2_uc001mkb.2_Missense_Mutation_p.R802C|MICAL2_uc001mkc.2_Missense_Mutation_p.R781C|MICAL2_uc001mkd.2_Missense_Mutation_p.R610C|MICAL2_uc010rcj.1_Missense_Mutation_p.R240C|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	1028	LIM zinc-binding.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GGAGTGTTTCCGCTGCAGCAT	0.607000													16	186					0	0	0.004990	0	0
FTH1	2495	broad.mit.edu	37	11	61732494	61732494	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:61732494G>A	uc001nsu.2	-	3	587	c.352C>T	c.(352-354)CTG>TTG	p.L118L		NM_002032	NP_002023	P02794	FRIH_HUMAN	ferritin, heavy polypeptide 1	118	Ferritin-like diiron.				cell proliferation|cellular membrane organization|immune response|intracellular sequestering of iron ion|iron ion transport|negative regulation of cell proliferation|post-Golgi vesicle-mediated transport	cytosol|intracellular ferritin complex	ferric iron binding|ferroxidase activity|protein binding			ovary(1)	1					Iron Dextran(DB00893)	AGTTTGTGCAGTTCCAGTAGT	0.448000													5	734					0	0	0.001168	0	0
GDPD5	81544	broad.mit.edu	37	11	75152278	75152278	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:75152278G>A	uc001owo.3	-	15	1940	c.1403C>T	c.(1402-1404)GCG>GTG	p.A468V	GDPD5_uc001owp.3_Missense_Mutation_p.A468V|GDPD5_uc001own.3_Missense_Mutation_p.A223V|GDPD5_uc009yuc.2_Missense_Mutation_p.A330V|GDPD5_uc009yud.2_Missense_Mutation_p.A349V	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	468	Extracellular (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						TGGGACCCCCGCACACCACAG	0.657000													11	173					0	0	0.002450	0	0
DSCAML1	57453	broad.mit.edu	37	11	117387200	117387200	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:117387200C>T	uc001prh.1	-	8	1947	c.1945G>A	c.(1945-1947)GTT>ATT	p.V649I		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	589	Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GCTACGTGAACGCTCTGGCTG	0.632000													7	202					0	0	0.003080	0	0
CCDC15	80071	broad.mit.edu	37	11	124857652	124857652	+	Silent	SNP	G	A	A	rs111966038		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:124857652G>A	uc001qbm.3	+	8	1789	c.1530G>A	c.(1528-1530)TTG>TTA	p.L510L		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	510						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		AGAATTTTTTGTCTAGAGACC	0.388000													7	508					0	0	0.001855	0	0
DCP1B	196513	broad.mit.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:2062350C>G	uc001qjx.1	-	7	836	c.756G>C	c.(754-756)CAG>CAC	p.Q252H	DCP1B_uc010sdy.1_Missense_Mutation_p.Q150H	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	252	Poly-Gln.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			gctgctgctgctgGTGGAGAG	0.458000													5	131					0	0	0.001168	0	0
PRB2	653247	broad.mit.edu	37	12	11546150	11546150	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:11546150G>C	uc010shk.1	-	3	897	c.862C>G	c.(862-864)CCA>GCA	p.P288A		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CCTCCTTGTGGGGGTGGTCCT	0.617000													5	594					0	0	0.004482	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717016	13717016	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:13717016G>A	uc001rbt.2	-	13	3335	c.3156C>T	c.(3154-3156)CAC>CAT	p.H1052H		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1052	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCAAGTCGTCGTGGCCACTGT	0.572000													7	96					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	12	31307356	31307356	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:31307356T>C	uc010sjy.1	-	7	724	c.724A>G	c.(724-726)AAA>GAA	p.K242E						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		ATTTGGGTTTTCCCTTGCACA	0.383000													3	59					0	0	0.001168	0	0
USP15	9958	broad.mit.edu	37	12	62715327	62715327	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:62715327C>T	uc001src.1	+	5	567	c.558C>T	c.(556-558)AAC>AAT	p.N186N	USP15_uc001srb.1_Silent_p.N186N|USP15_uc001sra.2_Silent_p.N186N	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	186					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		ACATGAGTAACACATTTGAAC	0.333000													21	154					0	0	0.012319	0	0
PLEKHG7	440107	broad.mit.edu	37	12	93147864	93147864	+	Splice_Site	SNP	A	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:93147864A>C	uc001tcj.2	+	6	546	c.316_splice	c.e6-2	p.W106_splice		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G						regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						TGCCTTCCCCAGTGGTGTGAG	0.502000													7	171					0	0	0.013537	0	0
NOS1	4842	broad.mit.edu	37	12	117662915	117662915	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:117662915G>A	uc001twm.1	-	25	4418	c.3732C>T	c.(3730-3732)AAC>AAT	p.N1244N		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1244					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGACTTGGGGGTTCCGGGGCA	0.542000													5	394					0	0	0.000602	0	0
LOC284232	284232	broad.mit.edu	37	13	19415641	19415641	+	RNA	SNP	A	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr13:19415641A>T	uc010tcj.1	-	1		c.30469T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						aaaaaaaaaaaaacccaaaca	0.169000													5	63					0	0	0.000602	0	0
LHFP	10186	broad.mit.edu	37	13	40175087	40175087	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr13:40175087G>A	uc001uxf.2	-	2	778	c.267C>T	c.(265-267)ACC>ACT	p.T89T		NM_005780	NP_005771	Q9Y693	LHFP_HUMAN	lipoma HMGIC fusion partner precursor	89	Helical; (Potential).					integral to membrane	DNA binding		HMGA2/LHFP(2)	soft_tissue(2)|lung(1)|breast(1)	4		Lung NSC(96;3.55e-06)|Breast(139;0.00408)|Ovarian(182;0.0107)|Prostate(109;0.0118)|Lung SC(185;0.0719)|Hepatocellular(188;0.114)		OV - Ovarian serous cystadenocarcinoma(117;6.48e-46)|Epithelial(112;8.43e-42)|all cancers(112;1.42e-36)|GBM - Glioblastoma multiforme(144;0.00187)|BRCA - Breast invasive adenocarcinoma(63;0.00886)|KIRC - Kidney renal clear cell carcinoma(186;0.048)|Kidney(163;0.0601)|LUSC - Lung squamous cell carcinoma(192;0.105)		AACCCAGGCCGGTCACTATGG	0.602000			T	HMGA2	lipoma								4	424					0	0	0.009096	0	0
HEATR5A	25938	broad.mit.edu	37	14	31785103	31785103	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:31785103C>T	uc001wrf.3	-	21	3289	c.3212G>A	c.(3211-3213)CGA>CAA	p.R1071Q	HEATR5A_uc010ami.2_Missense_Mutation_p.R969Q	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1358							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		ATGAACTCTTCGGAGATCATT	0.338000													4	36					0	0	0.009096	0	0
ZFP36L1	677	broad.mit.edu	37	14	69256307	69256307	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:69256307G>A	uc001xkh.1	-	2	1090	c.960C>T	c.(958-960)ACC>ACT	p.T320T	ZFP36L1_uc001xki.1_Silent_p.T320T	NM_004926	NP_004917	Q07352	TISB_HUMAN	butyrate response factor 1	320					regulation of mRNA stability	cytosol|nucleus	DNA binding|mRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				all cancers(60;0.00203)|BRCA - Breast invasive adenocarcinoma(234;0.00205)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		AGTTGTCCAAGGTCGGGGAGT	0.597000											OREG0022753	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	402					0	0	0.009096	0	0
C14orf102	55051	broad.mit.edu	37	14	90770393	90770393	+	Silent	SNP	G	A	A	rs147340971		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:90770393G>A	uc001xyi.1	-	5	922	c.891C>T	c.(889-891)GAC>GAT	p.D297D	C14orf102_uc010atp.1_Translation_Start_Site|C14orf102_uc001xyj.1_Silent_p.D66D	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	297	Potential.						protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		CTGGCTGTGCGTCTGGCTGCT	0.547000													40	400					0	0	0.013114	0	0
Unknown	0	broad.mit.edu	37	15	28929385	28929385	+	RNA	SNP	T	C	C	rs692172	by1000genomes	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr15:28929385T>C	uc010azc.2	+	14		c.2090T>C								Homo sapiens I.M.A.G.E. clone 321824, mRNA sequence.																		CACGCTGCGGTGGTCTTGCAT	0.453000													3	102					0	0	0.009096	0	0
VPS13C	54832	broad.mit.edu	37	15	62283898	62283898	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr15:62283898T>C	uc002agz.2	-	17	1531	c.1457A>G	c.(1456-1458)AAG>AGG	p.K486R	VPS13C_uc002aha.2_Missense_Mutation_p.K443R|VPS13C_uc002ahb.1_Missense_Mutation_p.K486R|VPS13C_uc002ahc.1_Missense_Mutation_p.K443R	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	486					protein localization					ovary(2)	2						TTCTTCGTCCTTTTTCTTAGA	0.373000													4	510					0	0	0.000602	0	0
ARNT2	9915	broad.mit.edu	37	15	80855505	80855505	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr15:80855505G>A	uc002bfr.2	+	12	1407	c.1241G>A	c.(1240-1242)CGC>CAC	p.R414H	ARNT2_uc010unm.1_Missense_Mutation_p.R403H|ARNT2_uc002bfs.2_Missense_Mutation_p.R403H	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	414	PAC.				central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			ATGTTGATCCGCACCAGCAGC	0.478000													6	673					0	0	0.001168	0	0
ACAN	176	broad.mit.edu	37	15	89399965	89399965	+	Silent	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr15:89399965T>C	uc010upo.1	+	12	4523	c.4149T>C	c.(4147-4149)ACT>ACC	p.T1383T	ACAN_uc010upp.1_Silent_p.T1383T|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1383					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TTCTAGAGACTGCTGCCCCTG	0.557000													4	433					0	0	0.000602	0	0
LRRK1	79705	broad.mit.edu	37	15	101593294	101593294	+	Splice_Site	SNP	G	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr15:101593294G>T	uc002bwr.2	+	25	4175	c.3856_splice	c.e25+1	p.D1286_splice	LRRK1_uc010usb.1_Splice_Site|LRRK1_uc010usc.1_Splice_Site|LRRK1_uc002bws.2_5'Flank	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1						small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GTACCGGCAGGTAAGCGGGTC	0.582000													6	86					8.12818e-05	8.4935e-05	0.001984	1	0
XYLT1	64131	broad.mit.edu	37	16	17211716	17211716	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:17211716C>T	uc002dfa.2	-	11	2429	c.2344G>A	c.(2344-2346)GTC>ATC	p.V782I		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	782	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						ACCCAAATGACGGTCACGGTC	0.557000													26	252					0	0	0.006320	0	0
RRN3P3	100131998	broad.mit.edu	37	16	22448704	22448704	+	RNA	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:22448704G>A	uc002dkp.2	-	1		c.333C>T			RRN3P3_uc010vbu.1_RNA|LOC641298_uc010bxf.2_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						GCTTGGCCATGTCGTGTCGGG	0.657000													4	15					0	0	0.000602	0	0
PALB2	79728	broad.mit.edu	37	16	23646396	23646396	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:23646396C>T	uc002dlx.1	-	4	1671	c.1471G>A	c.(1471-1473)GCT>ACT	p.A491T		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	491					double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		GTGGGCCCAGCGGGAGAGCTG	0.468000			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of				5	480					0	0	0.001168	0	0
RBBP6	5930	broad.mit.edu	37	16	24582587	24582587	+	Silent	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:24582587A>G	uc002dmh.2	+	18	5240	c.4200A>G	c.(4198-4200)AAA>AAG	p.K1400K	RBBP6_uc002dmi.2_Silent_p.K1366K|RBBP6_uc010bxr.2_Silent_p.K560K|RBBP6_uc002dmk.2_Silent_p.K1233K	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1400					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		CTAGTGAAAAAGGGAAAACCA	0.408000													3	160					0	0	0.004672	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	Missense_Mutation	SNP	T	C	C	rs79284655		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:32890639T>C	uc002edh.1	-	5	423	c.247A>G	c.(247-249)AAG>GAG	p.K83E	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						ACCAGCGGCTTGTAGTACACA	0.453000													5	134					0	0	0.001984	0	0
C16orf57	79650	broad.mit.edu	37	16	58036499	58036499	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:58036499G>A	uc002emz.2	+	2	298	c.215G>A	c.(214-216)CGC>CAC	p.R72H	ZNF319_uc002emx.1_5'Flank|C16orf57_uc010via.1_Missense_Mutation_p.R72H|C16orf57_uc002emy.2_RNA|C16orf57_uc010vib.1_Missense_Mutation_p.R72H|C16orf57_uc010vic.1_Missense_Mutation_p.R21H	NM_024598	NP_078874	Q9BQ65	CP057_HUMAN	hypothetical protein LOC79650	72											0						GGACGGGTGCGCACCTTCCCC	0.587000													4	230					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333000													3	30					0	0	0.004672	0	0
CDH13	1012	broad.mit.edu	37	16	83704472	83704472	+	Silent	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:83704472A>G	uc002fgx.2	+	9	1299	c.1179A>G	c.(1177-1179)ACA>ACG	p.T393T	CDH13_uc010vns.1_Silent_p.T440T|CDH13_uc010vnt.1_Silent_p.T139T|CDH13_uc010vnu.1_Silent_p.T354T	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	393	Cadherin 3.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		ACCCCACCACAGGTGCATGGA	0.493000													4	315					0	0	0.000602	0	0
TP53	7157	broad.mit.edu	37	17	7577547	7577547	+	Missense_Mutation	SNP	C	A	A	rs121912656		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:7577547C>A	uc002gim.2	-	7	928	c.734G>T	c.(733-735)GGC>GTC	p.G245V	TP53_uc002gig.1_Missense_Mutation_p.G245V|TP53_uc002gih.2_Missense_Mutation_p.G245V|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.G113V|TP53_uc010cng.1_Missense_Mutation_p.G113V|TP53_uc002gii.1_Missense_Mutation_p.G113V|TP53_uc010cnh.1_Missense_Mutation_p.G245V|TP53_uc010cni.1_Missense_Mutation_p.G245V|TP53_uc002gij.2_Missense_Mutation_p.G245V|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.G152V|TP53_uc002gio.2_Missense_Mutation_p.G113V	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	245	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		G -> N (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> A (in sporadic cancers; somatic mutation).|G -> V (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> F (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> R (in sporadic cancers; somatic mutation).|G -> E (in a sporadic cancer; somatic mutation).|G -> D (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> H (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|G -> L (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G245S(274)|p.G245D(93)|p.G245V(50)|p.G245C(47)|p.G245R(10)|p.G245A(8)|p.0?(7)|p.G245G(3)|p.G245fs*2(3)|p.G245N(2)|p.G245H(1)|p.G245L(1)|p.G244fs*17(1)|p.G245F(1)|p.G245E(1)|p.C242_M246>L(1)|p.C238_M246delCNSSCMGGM(1)|p.G245del(1)|p.C242fs*98(1)|p.G245fs*22(1)|p.M243fs*18(1)|p.S241_G245delSCMGG(1)|p.G245fs*14(1)|p.G245fs*17(1)|p.G245fs*16(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCGGTTCATGCCGCCCATGCA	0.582000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			23	178					3.28513e-13	3.53199e-13	0.003954	1	0
Unknown	0	broad.mit.edu	37	17	18343437	18343437	+	RNA	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:18343437G>A	uc010vya.1	+	1		c.216G>A								Homo sapiens cDNA FLJ56791 complete cds, highly similar to Keratin, type I cytoskeletal 16.																		CAGCACCTACGGGGGGGCCTG	0.592000													3	12					0	0	0.009096	0	0
SPACA3	124912	broad.mit.edu	37	17	31322436	31322436	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:31322436C>T	uc002hhs.1	+	2	119	c.44C>T	c.(43-45)TCA>TTA	p.S15L	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	15	Cytoplasmic (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			GGGGTGCACTCAAGCCCTGTT	0.607000													15	284					0	0	0.007413	0	0
GPR179	440435	broad.mit.edu	37	17	36486065	36486065	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:36486065C>T	uc002hpz.2	-	11	3408	c.3387G>A	c.(3385-3387)TCG>TCA	p.S1129S		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1129	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTAGCCTGGGCGATCGGGAGG	0.627000													9	348					0	0	0.004482	0	0
FBXO47	494188	broad.mit.edu	37	17	37119246	37119246	+	Missense_Mutation	SNP	C	G	G	rs140430888	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:37119246C>G	uc002hrc.2	-	2	233	c.33G>C	c.(31-33)TTG>TTC	p.L11F		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	11											0						GGTTGGGAATCAAAGTGAAAT	0.363000													92	421					0	0	0.014410	0	0
EFTUD2	9343	broad.mit.edu	37	17	42961062	42961062	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:42961062C>G	uc002ihn.2	-	5	642	c.381G>C	c.(379-381)GAG>GAC	p.E127D	EFTUD2_uc010wje.1_Missense_Mutation_p.E92D|EFTUD2_uc010wjf.1_Missense_Mutation_p.E127D	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	127						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				TTCTGATGAGCTCTGAGTTAT	0.438000													23	212					0	0	0.003330	0	0
ITGA3	3675	broad.mit.edu	37	17	48151552	48151552	+	Silent	SNP	C	T	T	rs78768954	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:48151552C>T	uc010dbl.2	+	9	1754	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F	ITGA3_uc010dbm.2_Silent_p.F430F	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	430	FG-GAP 7.|Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						TGGCCACCTTCGGCTATTCCC	0.612000													10	623					0	0	0.008291	0	0
CACNA1G	8913	broad.mit.edu	37	17	48678109	48678109	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:48678109C>T	uc002irk.1	+	18	4085	c.3713C>T	c.(3712-3714)GCG>GTG	p.A1238V	CACNA1G_uc002iri.1_Missense_Mutation_p.A1238V|CACNA1G_uc002irj.1_Missense_Mutation_p.A1215V|CACNA1G_uc002irl.1_Missense_Mutation_p.A1215V|CACNA1G_uc002irm.1_Missense_Mutation_p.A1215V|CACNA1G_uc002irn.1_Missense_Mutation_p.A1215V|CACNA1G_uc002iro.1_Missense_Mutation_p.A1215V|CACNA1G_uc002irp.1_Missense_Mutation_p.A1238V|CACNA1G_uc002irq.1_Missense_Mutation_p.A1215V|CACNA1G_uc002irr.1_Missense_Mutation_p.A1238V|CACNA1G_uc002irs.1_Missense_Mutation_p.A1238V|CACNA1G_uc002irt.1_Missense_Mutation_p.A1238V|CACNA1G_uc002irv.1_Missense_Mutation_p.A1238V|CACNA1G_uc002irw.1_Missense_Mutation_p.A1215V|CACNA1G_uc002iru.1_Missense_Mutation_p.A1215V|CACNA1G_uc002irx.1_Missense_Mutation_p.A1151V|CACNA1G_uc002iry.1_Missense_Mutation_p.A1151V|CACNA1G_uc002irz.1_Missense_Mutation_p.A1151V|CACNA1G_uc002isa.1_Missense_Mutation_p.A1151V|CACNA1G_uc002isb.1_Missense_Mutation_p.A1151V|CACNA1G_uc002isc.1_Missense_Mutation_p.A1151V|CACNA1G_uc002isd.1_Missense_Mutation_p.A1151V|CACNA1G_uc002ise.1_Missense_Mutation_p.A1151V|CACNA1G_uc002isf.1_Missense_Mutation_p.A1151V|CACNA1G_uc002isg.1_Missense_Mutation_p.A1151V|CACNA1G_uc002ish.1_Missense_Mutation_p.A1151V|CACNA1G_uc002isi.1_Missense_Mutation_p.A1128V|CACNA1G_uc002isj.2_5'UTR	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1238	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CGGGTCCGCGCGTGGATCCGA	0.627000													11	333					0	0	0.001855	0	0
KPNA2	3838	broad.mit.edu	37	17	66040473	66040473	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:66040473G>A	uc002jgk.2	+	9	1333	c.1201G>A	c.(1201-1203)GTG>ATG	p.V401M	KPNA2_uc002jgl.2_Missense_Mutation_p.V401M	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	401	NLS binding site (minor) (By similarity).|ARM 8.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			TGTGTGGGCCGTGACCAACTA	0.388000													5	798					0	0	0.000602	0	0
DUS1L	64118	broad.mit.edu	37	17	80022799	80022799	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:80022799G>A	uc002kdq.2	-	1	556	c.137C>T	c.(136-138)ACG>ATG	p.T46M	DUS1L_uc002kdp.2_5'Flank|DUS1L_uc002kdr.2_Missense_Mutation_p.T46M|DUS1L_uc002kds.2_RNA|DUS1L_uc002kdt.2_RNA|DUS1L_uc010wvi.1_Missense_Mutation_p.T46M	NM_022156	NP_071439	Q6P1R4	DUS1L_HUMAN	PP3111 protein	46					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity			skin(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			CAGCATGGGCGTGTAGCAGAG	0.692000													4	279					0	0	0.000602	0	0
RAB40B	10966	broad.mit.edu	37	17	80615795	80615795	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:80615795G>A	uc002kft.2	-	6	907	c.781C>T	c.(781-783)CGC>TGC	p.R261C	RAB40B_uc002kfs.2_RNA	NM_006822	NP_006813	Q12829	RB40B_HUMAN	RAB40B, member RAS oncogene family	261					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			central_nervous_system(1)	1	Breast(20;0.00132)|all_neural(118;0.0952)	all_cancers(8;0.072)|all_epithelial(8;0.139)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.061)			TGGGGGGGGCGGACGAGCTTC	0.577000													4	335					0	0	0.000602	0	0
SMAD4	4089	broad.mit.edu	37	18	48575132	48575132	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr18:48575132T>A	uc010xdp.1	+	3	864	c.326T>A	c.(325-327)CTA>CAA	p.L109Q	SMAD4_uc010xdo.1_RNA	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	109	MH1.				BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(4)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		AAAAATGAACTAAAACATGTT	0.373000									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				26	248					0	0	0.008361	0	0
MYO1F	4542	broad.mit.edu	37	19	8604848	8604848	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:8604848C>T	uc002mkg.2	-	16	1789	c.1675G>A	c.(1675-1677)GCC>ACC	p.A559T		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	559	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						TTGGAGCCGGCGGTGCTGGGG	0.632000													5	210					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9090831	9090831	+	Silent	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:9090831A>G	uc002mkp.2	-	1	1188	c.984T>C	c.(982-984)CCT>CCC	p.P328P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	328	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATGGAAAAAGGGATAGCTG	0.522000													6	257					0	0	0.001168	0	0
ZNF443	10224	broad.mit.edu	37	19	12541141	12541141	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:12541141C>T	uc002mtu.2	-	4	2043	c.1845G>A	c.(1843-1845)CCG>CCA	p.P615P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	615					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TACATTCATACGGGTTCTCTC	0.403000													4	237					0	0	0.009096	0	0
ZNF443	10224	broad.mit.edu	37	19	12542283	12542283	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:12542283A>G	uc002mtu.2	-	4	901	c.703T>C	c.(703-705)TCT>CCT	p.S235P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	235	C2H2-type 4.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CTGTAAAAAGAAAAGGCTTTA	0.378000													6	674					0	0	0.006214	0	0
SAMD1	90378	broad.mit.edu	37	19	14199337	14199337	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:14199337G>A	uc010xnl.1	-	7	1509	c.1509C>T	c.(1507-1509)ACC>ACT	p.T503T		NM_138352	NP_612361	Q6SPF0	SAMD1_HUMAN	sterile alpha motif domain containing 1	503	SAM.					cytoplasm|extracellular region					0		Renal(1328;0.00183)|Hepatocellular(1079;0.00826)		GBM - Glioblastoma multiforme(1328;0.000411)|STAD - Stomach adenocarcinoma(1328;0.00644)|Lung(535;0.199)		TGGACAGGCCGGTGAGCACAT	0.572000													3	100					0	0	0.004672	0	0
ZNF486	90649	broad.mit.edu	37	19	20308264	20308264	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:20308264T>A	uc002nou.2	+	4	802	c.745T>A	c.(745-747)TAC>AAC	p.Y249N		NM_052852	NP_443084	Q96H40	ZN486_HUMAN	zinc finger protein 486	249	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGTCTTTAAGTACTTCTCTAG	0.393000													16	180					0	0	0.003163	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418000													6	608					0	0	0.003080	0	0
NLRP8	126205	broad.mit.edu	37	19	56466153	56466153	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:56466153C>A	uc002qmh.2	+	3	800	c.729C>A	c.(727-729)TTC>TTA	p.F243L	NLRP8_uc010etg.2_Missense_Mutation_p.F243L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	243	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CTTTCTACTTCCATTGCCAAG	0.507000													79	373					9.25274e-37	1.00644e-36	0.014410	1	0
NLRP8	126205	broad.mit.edu	37	19	56466562	56466562	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:56466562T>A	uc002qmh.2	+	3	1209	c.1138T>A	c.(1138-1140)TTG>ATG	p.L380M	NLRP8_uc010etg.2_Missense_Mutation_p.L380M	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	380	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AGACCAAGTCTTGAGTTTCGC	0.478000													12	358					0	0	0.013537	0	0
ZNF264	9422	broad.mit.edu	37	19	57723865	57723865	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:57723865G>A	uc002qob.2	+	4	1813	c.1400G>A	c.(1399-1401)CGG>CAG	p.R467Q		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	467	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		TTTAGCAATCGGAAGGACCTC	0.532000													4	215					0	0	0.009096	0	0
SAP130	79595	broad.mit.edu	37	2	128747337	128747337	+	Silent	SNP	C	T	T	rs148999283	by1000genomes	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:128747337C>T	uc002tpp.2	-	13	1791	c.1659G>A	c.(1657-1659)TCG>TCA	p.S553S	SAP130_uc002tpn.2_Silent_p.S314S|SAP130_uc002tpo.2_Silent_p.S298S|SAP130_uc010fmd.2_Silent_p.S553S|SAP130_uc002tpq.1_Silent_p.S526S	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	553					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		GTCGAGCATGCGATGCATCCA	0.577000													4	212					0	0	0.009096	0	0
LOC440905	440905	broad.mit.edu	37	2	130786055	130786055	+	RNA	SNP	A	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:130786055A>T	uc002tpz.2	-	11		c.2813T>A			LOC440905_uc002tpy.1_RNA	NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						AGACCTGGAAACCTGGGGGAA	0.428000													3	11					0	0	0.006214	0	0
SCN9A	6335	broad.mit.edu	37	2	167162315	167162315	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:167162315C>T	uc010fpl.2	-	5	924	c.583G>A	c.(583-585)GTC>ATC	p.V195I	SCN9A_uc002udr.1_Missense_Mutation_p.V66I|SCN9A_uc002uds.1_Missense_Mutation_p.V66I|SCN9A_uc002udt.1_Missense_Mutation_p.V66I	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	195	Helical; Name=S3 of repeat I; (Potential).|I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.V195I(1)		ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AAAACAATGACGACAAAATCC	0.398000													33	225					0	0	0.004878	0	0
HOXD13	3239	broad.mit.edu	37	2	176959381	176959381	+	Nonsense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:176959381C>T	uc002ukf.1	+	2	1042	c.955C>T	c.(955-957)CAA>TAA	p.Q319*		NM_000523	NP_000514	P35453	HXD13_HUMAN	homeobox D13	319	Homeobox.				skeletal system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0526)|READ - Rectum adenocarcinoma(9;0.0678)		ATCTGAGAGACAAGTGACCAT	0.463000			T	NUP98	AML*								9	198					0	0	0.008291	0	0
PRKRA	8575	broad.mit.edu	37	2	179300952	179300952	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:179300952C>A	uc002umf.2	-	7	905	c.704G>T	c.(703-705)AGT>ATT	p.S235I	PRKRA_uc002umc.2_Missense_Mutation_p.S67I|PRKRA_uc002umd.2_Missense_Mutation_p.S210I|PRKRA_uc002ume.2_Missense_Mutation_p.S224I|PRKRA_uc002umg.2_Missense_Mutation_p.S122I|PRKRA_uc002umh.1_5'Flank	NM_003690	NP_003681	O75569	PRKRA_HUMAN	protein kinase, interferon-inducible double	235	Sufficient for self-association and interaction with TARBP2.				immune response|negative regulation of cell proliferation|production of siRNA involved in RNA interference|response to virus	perinuclear region of cytoplasm	double-stranded RNA binding|enzyme activator activity|protein homodimerization activity			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.00634)|all cancers(119;0.0265)			ATTTGGAATACTAAGGAGGCT	0.338000													21	583					5.09552e-08	5.35461e-08	0.010818	1	0
CASP8	841	broad.mit.edu	37	2	202131315	202131315	+	Nonsense_Mutation	SNP	G	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:202131315G>T	uc002uxr.1	+	3	315	c.106G>T	c.(106-108)GAA>TAA	p.E36*	CASP8_uc010ftc.1_Nonsense_Mutation_p.E36*|CASP8_uc002uxo.1_Nonsense_Mutation_p.E36*|CASP8_uc002uxp.1_Nonsense_Mutation_p.E36*|CASP8_uc002uxq.1_Nonsense_Mutation_p.E36*|CASP8_uc002uxs.1_Nonsense_Mutation_p.E36*|CASP8_uc002uxt.1_Nonsense_Mutation_p.E95*|CASP8_uc002uxu.1_RNA|CASP8_uc010ftd.1_Intron|CASP8_uc002uxv.1_Nonsense_Mutation_p.E36*|CASP8_uc002uxw.1_Nonsense_Mutation_p.E36*|CASP8_uc002uxy.1_Nonsense_Mutation_p.E36*|CASP8_uc002uxx.1_Nonsense_Mutation_p.E36*|CASP8_uc010ftf.2_Nonsense_Mutation_p.E36*	NM_033355	NP_203519	Q14790	CASP8_HUMAN	caspase 8 isoform B precursor	36	DED 1.				activation of caspase activity|activation of pro-apoptotic gene products|cellular component disassembly involved in apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis involved in cellular protein catabolic process|response to tumor necrosis factor	centrosome|cytosol|mitochondrial outer membrane	cysteine-type endopeptidase activity|protein binding|protein binding			upper_aerodigestive_tract(2)|ovary(1)|breast(1)|skin(1)	5						AAGGAAGCAAGAACCCATCAA	0.468000										HNSCC(4;0.00038)			19	153					3.8784e-16	4.19409e-16	0.012319	1	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:207025358A>G	uc002vbf.1	+	3	285	c.127A>G	c.(127-129)AGC>GGC	p.S43G	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Missense_Mutation_p.S43G|EEF1B2_uc002vbh.1_Missense_Mutation_p.S43G|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	43	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						AGCCGTGTCCAGCCCACCGCC	0.468000													4	350					0	0	0.001168	0	0
ATRN	8455	broad.mit.edu	37	20	3564687	3564687	+	Silent	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr20:3564687T>C	uc002wim.2	+	17	2997	c.2907T>C	c.(2905-2907)CCT>CCC	p.P969P	ATRN_uc002wil.2_Silent_p.P969P	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	969	Extracellular (Potential).|PSI 3.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						CCTCCTTCCCTTTTGGCCAGT	0.537000													4	778					0	0	0.000602	0	0
DNMT3B	1789	broad.mit.edu	37	20	31388677	31388677	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr20:31388677G>A	uc002wyc.2	+	18	2263	c.1942G>A	c.(1942-1944)GGA>AGA	p.G648R	DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Missense_Mutation_p.G628R|DNMT3B_uc002wye.2_Missense_Mutation_p.G628R|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.G586R|DNMT3B_uc010zua.1_Missense_Mutation_p.G552R|DNMT3B_uc002wyf.2_Missense_Mutation_p.G640R|DNMT3B_uc002wyg.2_Missense_Mutation_p.G347R|DNMT3B_uc010geg.2_5'UTR|DNMT3B_uc010geh.2_RNA	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	648					negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						GGTGATTGGCGGAAGCCCATG	0.522000													5	597					0	0	0.001168	0	0
ADA	100	broad.mit.edu	37	20	43249032	43249032	+	Missense_Mutation	SNP	G	A	A	rs121908715	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr20:43249032G>A	uc002xmj.2	-	11	1114	c.986C>T	c.(985-987)GCG>GTG	p.A329V	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	329					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	AGATTTGGCCGCATTGATGTT	0.338000									Adenosine_Deaminase_Deficiency				4	178					0	0	0.000602	0	0
AURKA	6790	broad.mit.edu	37	20	54945655	54945655	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr20:54945655C>T	uc002xxd.1	-	10	1481	c.915G>A	c.(913-915)ATG>ATA	p.M305I	AURKA_uc002xxe.1_Missense_Mutation_p.M305I|AURKA_uc002xxf.1_Missense_Mutation_p.M305I|AURKA_uc002xxg.1_Missense_Mutation_p.M305I|AURKA_uc002xxh.1_Missense_Mutation_p.M305I|AURKA_uc002xxi.1_Missense_Mutation_p.M305I|AURKA_uc002xxj.1_Missense_Mutation_p.M305I|AURKA_uc002xxk.1_Missense_Mutation_p.M305I|AURKA_uc010zzd.1_RNA	NM_198433	NP_940835	O14965	AURKA_HUMAN	serine/threonine protein kinase 6	305	Protein kinase.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|phosphatidylinositol-mediated signaling|regulation of protein stability|spindle organization	cytosol|nucleus|perinuclear region of cytoplasm|spindle microtubule|spindle pole centrosome	ATP binding|protein kinase binding|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(1)|large_intestine(1)|skin(1)	8			Colorectal(105;0.202)			TCTCATCATGCATCCGACCTT	0.498000													19	202					0	0	0.008871	0	0
TPTE	7179	broad.mit.edu	37	21	11014952	11014952	+	RNA	SNP	A	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr21:11014952A>T	uc002yis.1	-	7		c.1494T>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CACATTGTCTACATTGCAGAA	0.333000													4	175					0	0	0.009096	0	0
TPTE	7179	broad.mit.edu	37	21	11014987	11014987	+	RNA	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr21:11014987A>G	uc002yis.1	-	7		c.1459T>C						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTATAGTTTCAATAGCAGACT	0.388000													4	146					0	0	0.009096	0	0
KRTAP6-2	337967	broad.mit.edu	37	21	31971102	31971102	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr21:31971102C>T	uc011adc.1	-	1	92	c.92G>A	c.(91-93)CGC>CAC	p.R31H	KRTAP22-1_uc011add.1_5'Flank	NM_181604	NP_853635	Q3LI66	KRA62_HUMAN	keratin associated protein 6-2	31						intermediate filament					0						ATAGCCACAGCGCAGGCTTCC	0.562000													15	173					0	0	0.004007	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999841	45999841	+	Silent	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr21:45999841A>G	uc002zfl.1	-	1	641	c.615T>C	c.(613-615)TGT>TGC	p.C205C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	205	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						AAGCCGGCTGACAGCTAGACT	0.632000													4	716					0	0	0.003080	0	0
CECR1	51816	broad.mit.edu	37	22	17688057	17688057	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr22:17688057G>A	uc002zmk.1	-	2	658	c.446C>T	c.(445-447)GCT>GTT	p.A149V	CECR1_uc010gqu.1_Missense_Mutation_p.A149V|CECR1_uc011agi.1_Missense_Mutation_p.A107V|CECR1_uc011agj.1_Missense_Mutation_p.A107V	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	149	PRB domain.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				AGTTGGGTGAGCAAATCTGAA	0.512000													4	400					0	0	0.009096	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													3	126					0	0	0.004672	0	0
PIWIL3	440822	broad.mit.edu	37	22	25150113	25150113	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr22:25150113G>A	uc003abd.1	-	8	1262	c.845C>T	c.(844-846)GCC>GTC	p.A282V	PIWIL3_uc011ajx.1_Missense_Mutation_p.A173V|PIWIL3_uc011ajy.1_Missense_Mutation_p.A173V|PIWIL3_uc010gut.1_Missense_Mutation_p.A282V	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	282					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						GCTCACATCGGCACAGAGGGT	0.413000													4	278					0	0	0.009096	0	0
CBY1	25776	broad.mit.edu	37	22	39066930	39066930	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr22:39066930C>T	uc003awb.2	+	4	396	c.120C>T	c.(118-120)TAC>TAT	p.Y40Y	CBY1_uc011any.1_Silent_p.Y40Y|CBY1_uc003awc.2_Silent_p.Y40Y|uc003awd.2_RNA	NM_001002880	NP_001002880	Q9Y3M2	CBY1_HUMAN	PKD2 interactor, golgi and endoplasmic reticulum	40					cardiac muscle cell differentiation|fat cell differentiation|negative regulation of transcription, DNA-dependent|protein localization	nuclear speck|trans-Golgi network	beta-catenin binding|identical protein binding			ovary(1)	1	Melanoma(58;0.04)					GCTTGGAATACGGATCCCCGA	0.542000													5	418					0	0	0.001168	0	0
ZNF860	344787	broad.mit.edu	37	3	32031962	32031962	+	Missense_Mutation	SNP	A	G	G	rs1808125	by1000genomes	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:32031962A>G	uc011axg.1	+	2	1940	c.1391A>G	c.(1390-1392)CAT>CGT	p.H464R		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	464	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGACCTTCCATCACAATTCA	0.418000													5	335					0	0	0.001984	0	0
CCR4	1233	broad.mit.edu	37	3	32995416	32995416	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:32995416G>A	uc003cfg.1	+	2	670	c.502G>A	c.(502-504)GCC>ACC	p.A168T		NM_005508	NP_005499	P51679	CCR4_HUMAN	chemokine (C-C motif) receptor 4	168	Helical; Name=4; (Potential).				chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response	integral to plasma membrane				lung(1)	1						GGCTGTGTTCGCCTCCCTTCC	0.502000													4	238					0	0	0.009096	0	0
LARS2	23395	broad.mit.edu	37	3	45441775	45441775	+	Silent	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:45441775T>C	uc003cop.1	+	4	458	c.273T>C	c.(271-273)CCT>CCC	p.P91P	LARS2_uc010hit.1_Intron	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	91					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	CCATGTTCCCTTATCCTTCTG	0.438000													4	249					0	0	0.000602	0	0
CELSR3	1951	broad.mit.edu	37	3	48685292	48685292	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:48685292G>A	uc003cul.2	-	20	7392	c.7111C>T	c.(7111-7113)CGG>TGG	p.R2371W	CELSR3_uc003cuf.1_Missense_Mutation_p.R2441W|CELSR3_uc010hkg.2_Missense_Mutation_p.R354W	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2371	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGGGATGGCCGTGGGGACTGG	0.627000													4	409					0	0	0.009096	0	0
DPPA4	55211	broad.mit.edu	37	3	109050795	109050795	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:109050795G>A	uc003dxq.3	-	3	317	c.262C>T	c.(262-264)CTG>TTG	p.L88L	DPPA4_uc011bho.1_Silent_p.L88L|DPPA4_uc011bhp.1_Silent_p.L88L	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	88						nucleus	protein binding			upper_aerodigestive_tract(1)	1						ACAGGTGGCAGTTTAGAAGGT	0.527000													4	443					0	0	0.001168	0	0
TRH	7200	broad.mit.edu	37	3	129695840	129695840	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:129695840G>A	uc003enc.2	+	3	1071	c.510G>A	c.(508-510)GAG>GAA	p.E170E		NM_007117	NP_009048	P20396	TRH_HUMAN	thyrotropin-releasing hormone	170					cell-cell signaling|hormone-mediated signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|thyrotropin-releasing hormone activity			ovary(1)	1						Gggaagaagaggaggaggagg	0.547000													5	130					0	0	0.000602	0	0
ATR	545	broad.mit.edu	37	3	142275317	142275317	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:142275317G>A	uc003eux.3	-	9	2108	c.1986C>T	c.(1984-1986)AGC>AGT	p.S662S		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	662					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CTTCATGGGAGCTCTGCAGGG	0.428000								Other_conserved_DNA_damage_response_genes					4	405					0	0	0.000602	0	0
YTHDC1	91746	broad.mit.edu	37	4	69202911	69202911	+	Silent	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:69202911T>C	uc003hdx.2	-	4	1070	c.717A>G	c.(715-717)GAA>GAG	p.E239E	YTHDC1_uc003hdy.2_Silent_p.E239E	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	239	Glu-rich.									upper_aerodigestive_tract(1)|ovary(1)	2						cctcctcctcttcctcctcct	0.159000													3	101					0	0	0.004672	0	0
OTUD4	54726	broad.mit.edu	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:146059006G>A	uc003ika.3	-	21	2864	c.2726C>T	c.(2725-2727)ACT>ATT	p.T909I	OTUD4_uc003ijz.3_Missense_Mutation_p.T908I	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	973							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AACAGGCACAGTTTCTCTCTC	0.463000													7	528					0	0	0.004482	0	0
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:146059041A>G	uc003ika.3	-	21	2829	c.2691T>C	c.(2689-2691)CAT>CAC	p.H897H	OTUD4_uc003ijz.3_Silent_p.H896H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	961							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GAGTGGGAGGATGAGCCTTTC	0.478000													4	467					0	0	0.000602	0	0
FHDC1	85462	broad.mit.edu	37	4	153864423	153864423	+	Missense_Mutation	SNP	A	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:153864423A>C	uc003inf.2	+	1	289	c.214A>C	c.(214-216)ATC>CTC	p.I72L		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	72					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GGAGCCTCCCATCCCACCTCC	0.502000													10	146					0	0	0.010504	0	0
ODZ3	55714	broad.mit.edu	37	4	183713474	183713474	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:183713474C>T	uc003ivd.1	+	25	5686	c.5649C>T	c.(5647-5649)TAC>TAT	p.Y1883Y		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1883	YD 7.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TCTTCGAATACGATATGTGGG	0.498000													17	246					0	0	0.007413	0	0
MYO10	4651	broad.mit.edu	37	5	16694499	16694499	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:16694499C>T	uc003jft.3	-	27	4249	c.3781G>A	c.(3781-3783)GTA>ATA	p.V1261I	MYO10_uc011cnc.1_Missense_Mutation_p.V140I|MYO10_uc011cnd.1_Missense_Mutation_p.V618I|MYO10_uc011cne.1_Missense_Mutation_p.V618I|MYO10_uc010itx.2_Missense_Mutation_p.V884I	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1261	PH 1.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						CGCACTTCTACGGTGCCCTTG	0.537000													35	505					0	0	0.006230	0	0
AQPEP	206338	broad.mit.edu	37	5	115336797	115336797	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:115336797G>A	uc003kro.2	+	10	1845	c.1681G>A	c.(1681-1683)GCA>ACA	p.A561T	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	561	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						TATTTTGCCAGCAACAATAAA	0.393000													4	328					0	0	0.000602	0	0
CDC23	8697	broad.mit.edu	37	5	137524750	137524750	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:137524750A>G	uc003lcl.2	-	16	1742	c.1711T>C	c.(1711-1713)TTT>CTT	p.F571L		NM_004661	NP_004652	Q9UJX2	CDC23_HUMAN	cell division cycle protein 23	571					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1 phase of mitotic cell cycle|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase plate congression|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of exit from mitosis	anaphase-promoting complex|cytosol|nucleoplasm	binding|ubiquitin-protein ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GGTAGGAAAAAGGGAGCAGGC	0.532000													4	206					0	0	0.009096	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431928	140431928	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:140431928G>A	uc003lik.1	+	1	950	c.873G>A	c.(871-873)ACG>ACA	p.T291T		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	291	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCTCAAGACGTTTCAGATTG	0.468000													18	152					0	0	0.008871	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725480	140725480	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:140725480G>A	uc003ljm.1	+	1	1880	c.1880G>A	c.(1879-1881)CGC>CAC	p.R627H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.R387H|PCDHGA3_uc011dap.1_Missense_Mutation_p.R627H	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	627	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGAGGTGCGCACGGCGCGA	0.697000													12	152					0	0	0.008871	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764634	140764634	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:140764634G>A	uc003lka.1	+	1	2168	c.2168G>A	c.(2167-2169)CGC>CAC	p.R723H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGB4_uc003lkc.1_5'Flank|PCDHGA7_uc003ljz.1_Missense_Mutation_p.R723H|PCDHGB4_uc011dav.1_5'Flank	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	723	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACAAGTCACGCCTGCTGCAG	0.627000													15	163					0	0	0.003163	0	0
WWC1	23286	broad.mit.edu	37	5	167881063	167881063	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:167881063C>T	uc003lzu.2	+	18	2709	c.2616C>T	c.(2614-2616)ACC>ACT	p.T872T	WWC1_uc003lzv.2_Silent_p.T872T|WWC1_uc011den.1_Silent_p.T872T|WWC1_uc003lzw.2_Silent_p.T671T|WWC1_uc010jjf.1_Silent_p.T144T	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	872	Glu-rich.|Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		aTGTTTTCACCGAGAAAGCCT	0.408000													22	462					0	0	0.003330	0	0
TRIM7	81786	broad.mit.edu	37	5	180622634	180622634	+	Silent	SNP	G	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:180622634G>T	uc003mmz.1	-	7	1135	c.1068C>A	c.(1066-1068)ATC>ATA	p.I356I	TRIM7_uc003mmv.1_Silent_p.I174I|TRIM7_uc003mmw.1_Silent_p.I148I|TRIM7_uc003mmx.1_Silent_p.I148I|TRIM7_uc003mmy.1_Silent_p.I148I	NM_203293	NP_976038	Q9C029	TRIM7_HUMAN	tripartite motif-containing 7 isoform 1	356	B30.2/SPRY.					cytoplasm|nucleus	zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;6.03e-06)|all_epithelial(37;7.1e-07)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000172)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;2e-06)|Epithelial(171;1.35e-05)|OV - Ovarian serous cystadenocarcinoma(192;0.000128)|Kidney(146;0.0674)|GBM - Glioblastoma multiforme(465;0.0802)		CCAGAGAGAGGATGAGGCGCG	0.662000													9	285					2.80697e-09	2.96646e-09	0.010729	1	0
DSP	1832	broad.mit.edu	37	6	7576570	7576570	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:7576570C>T	uc003mxp.1	+	19	2953	c.2674C>T	c.(2674-2676)CGT>TGT	p.R892C	DSP_uc003mxq.1_Missense_Mutation_p.R892C	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	892	Globular 1.|Spectrin 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAGGAATTATCGTGATAACTA	0.363000													7	210					0	0	0.006214	0	0
BTN2A3	54718	broad.mit.edu	37	6	26422353	26422353	+	Missense_Mutation	SNP	C	T	T	rs141013110		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:26422353C>T	uc011dkl.1	+	1	37	c.7C>T	c.(7-9)CCA>TCA	p.P3S	BTN2A3_uc011dkm.1_RNA					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						GCTCATGGAACCAGCTGCTGC	0.622000													25	442					0	0	0.009535	0	0
TNXB	7148	broad.mit.edu	37	6	32046862	32046862	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:32046862G>A	uc003nzl.2	-	11	4525	c.4323C>T	c.(4321-4323)TAC>TAT	p.Y1441Y		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1528	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGTGGAGGCCGTACAGGTGCA	0.697000													4	214					0	0	0.009096	0	0
C6orf10	10665	broad.mit.edu	37	6	32337697	32337697	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:32337697C>T	uc011dpy.1	-	2	250	c.77G>A	c.(76-78)AGA>AAA	p.R26K	C6orf10_uc011dpz.1_Missense_Mutation_p.R26K	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	26						integral to membrane				skin(1)	1						TCGTGCCCATCTTGTTAACAA	0.408000													5	610					0	0	0.001984	0	0
TULP1	7287	broad.mit.edu	37	6	35477678	35477678	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:35477678G>A	uc003okv.3	-	6	539	c.527C>T	c.(526-528)CCG>CTG	p.P176L	TULP1_uc003okw.3_Missense_Mutation_p.P123L	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	176					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						CAGAGGTTTCGGTGGGGGGTC	0.567000													5	360					0	0	0.001168	0	0
LRFN2	57497	broad.mit.edu	37	6	40399611	40399611	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:40399611G>A	uc003oph.1	-	2	1707	c.1242C>T	c.(1240-1242)GGC>GGT	p.G414G		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	414	Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GAGGCTCTCCGCCCCCACTGC	0.652000													23	202					0	0	0.014323	0	0
CCNC	892	broad.mit.edu	37	6	99994346	99994346	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:99994346G>A	uc003pqe.2	-	10	890	c.603C>T	c.(601-603)TGC>TGT	p.C201C	uc003pqc.2_Intron|CCNC_uc003pqd.2_Silent_p.C116C|CCNC_uc010kcr.2_RNA|CCNC_uc010kcs.2_Silent_p.C200C|CCNC_uc011eah.1_Silent_p.C116C	NM_005190	NP_005181	P24863	CCNC_HUMAN	cyclin C isoform a	201					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	DNA-directed RNA polymerase II, holoenzyme	protein kinase binding				0		all_cancers(76;8.46e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.064)		CTACATGTAGGCAAGCTGAAA	0.373000													4	245					0	0	0.009096	0	0
NCOA7	135112	broad.mit.edu	37	6	126210954	126210954	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:126210954A>G	uc010kes.2	+	11	2203	c.1754A>G	c.(1753-1755)AAG>AGG	p.K585R	NCOA7_uc003qae.3_Missense_Mutation_p.K585R|NCOA7_uc003qah.2_Missense_Mutation_p.K574R|NCOA7_uc003qai.2_Missense_Mutation_p.K585R|NCOA7_uc010ket.2_Missense_Mutation_p.K470R	NM_181782	NP_861447	Q8NI08	NCOA7_HUMAN	nuclear receptor coactivator 7 isoform 1	585					cell wall macromolecule catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (4;0.0803)|GBM - Glioblastoma multiforme(226;0.0193)|all cancers(137;0.237)		TGGGTGAAAAAGGGAGAGCCC	0.473000													4	209					0	0	0.000602	0	0
SYNE1	23345	broad.mit.edu	37	6	152763321	152763321	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:152763321C>T	uc010kiw.2	-	31	4499	c.3897G>A	c.(3895-3897)GCG>GCA	p.A1299A	SYNE1_uc003qot.3_Silent_p.A1306A|SYNE1_uc003qou.3_Silent_p.A1299A|SYNE1_uc010kjb.1_Silent_p.A1282A|SYNE1_uc003qow.2_Silent_p.A594A|SYNE1_uc003qox.1_Silent_p.A815A	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1299	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTCCCTGCTGCGCCTGCGCGA	0.567000										HNSCC(10;0.0054)			17	215					0	0	0.008871	0	0
LPA	4018	broad.mit.edu	37	6	161026093	161026093	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:161026093G>T	uc003qtl.2	-	19	3050	c.2930C>A	c.(2929-2931)GCA>GAA	p.A977E		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3485	Kringle 31.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGGGTAGTATGCTGGGGTCCG	0.438000													5	889					0.000157383	0.000163538	0.003080	1	0
SDK1	221935	broad.mit.edu	37	7	4185418	4185418	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:4185418C>T	uc003smx.2	+	29	4432	c.4293C>T	c.(4291-4293)GGC>GGT	p.G1431G	SDK1_uc010kso.2_Silent_p.G707G|SDK1_uc003smy.2_5'UTR	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1431	Fibronectin type-III 8.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGGAGGTCGGCGCCACAGTGA	0.667000													17	226					0	0	0.007413	0	0
DNAH11	8701	broad.mit.edu	37	7	21659575	21659575	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:21659575T>A	uc003svc.2	+	25	4425	c.4394T>A	c.(4393-4395)GTT>GAT	p.V1465D		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1465	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GATTACTAGGTTATTACTGAA	0.294000									Kartagener_syndrome				6	217					0	0	0.001168	0	0
HIP1	3092	broad.mit.edu	37	7	75368205	75368205	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:75368205G>A	uc003uds.1	-	1	75	c.34C>T	c.(34-36)CCC>TCC	p.P12S		NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	12					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						AGTGGGTTGGGCACCTGCTTC	0.746000			T	PDGFRB	CMML								3	22					0	0	0.004672	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94539954	94539954	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:94539954G>A	uc003unp.2	+	2	811	c.529G>A	c.(529-531)GGT>AGT	p.G177S	PPP1R9A_uc010lfj.2_Missense_Mutation_p.G177S|PPP1R9A_uc011kif.1_Missense_Mutation_p.G177S|PPP1R9A_uc003unq.2_Missense_Mutation_p.G177S|PPP1R9A_uc011kig.1_Missense_Mutation_p.G177S	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	177						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			TGAATGGGGAGGTTCCAAGTC	0.488000										HNSCC(28;0.073)			4	176					0	0	0.001168	0	0
C9orf79	286234	broad.mit.edu	37	9	90500146	90500146	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr9:90500146G>A	uc004app.3	+	4	779	c.744G>A	c.(742-744)CCG>CCA	p.P248P	C9orf79_uc004apo.1_Silent_p.P60P	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	248	Pro-rich.					integral to membrane				ovary(3)	3						CACCACAGCCGCATGGTCCCC	0.627000													4	367					0	0	0.000602	0	0
TNC	3371	broad.mit.edu	37	9	117849313	117849313	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr9:117849313T>C	uc004bjj.3	-	3	1059	c.697A>G	c.(697-699)AAT>GAT	p.N233D	TNC_uc010mvf.2_Missense_Mutation_p.N233D	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	233	EGF-like 3.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CAGACTCCATTTACGCACTTG	0.602000													10	205					0	0	0.010729	0	0
CEL	1056	broad.mit.edu	37	9	135946986	135946986	+	Silent	SNP	G	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr9:135946986G>C	uc010naa.1	+	11	2122	c.2106G>C	c.(2104-2106)GGG>GGC	p.G702G		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	699	13.|17 X 11 AA tandem repeats, glycodomain, O-linked (mucin type).				cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		GTGACTCCGGGGCCCCCCCCG	0.587000													3	10					0	0	0.009096	0	0
PNPLA4	8228	broad.mit.edu	37	X	7868821	7868821	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:7868821A>G	uc011mhq.1	-	7	830	c.668T>C	c.(667-669)CTT>CCT	p.L223P	PNPLA4_uc011mhr.1_Missense_Mutation_p.L223P|PNPLA4_uc011mhs.1_Missense_Mutation_p.L136P	NM_004650	NP_004641	P41247	PLPL4_HUMAN	patatin-like phospholipase domain containing 4	223					lipid catabolic process		triglyceride lipase activity				0		Colorectal(8;0.0329)|Medulloblastoma(8;0.232)				TGGGGGAAAAAGGGCTTGGTT	0.353000													3	117					0	0	0.004672	0	0
FRMPD4	9758	broad.mit.edu	37	X	12735745	12735745	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:12735745C>T	uc004cuz.1	+	16	3306	c.2800C>T	c.(2800-2802)CGC>TGC	p.R934C	FRMPD4_uc011mij.1_Missense_Mutation_p.R926C	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	934					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AAACCTCTCCCGCATGTTCTT	0.547000													64	595					0	0	0.014410	0	0
PPEF1	5475	broad.mit.edu	37	X	18797154	18797154	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:18797154G>A	uc004cyq.2	+	10	1066	c.585G>A	c.(583-585)CCG>CCA	p.P195P	PPEF1_uc004cyp.2_Silent_p.P195P|PPEF1_uc004cyr.2_Silent_p.P195P|PPEF1_uc004cys.2_Silent_p.P195P|PPEF1_uc011mja.1_Silent_p.P130P|PPEF1_uc011mjb.1_Silent_p.P139P	NM_006240	NP_006231	O14829	PPE1_HUMAN	protein phosphatase with EF hand calcium-binding	195	Catalytic.				detection of stimulus involved in sensory perception|protein dephosphorylation		calcium ion binding|iron ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity				0	Hepatocellular(33;0.183)					AGAGGAACCCGTATGTTTTTA	0.408000													43	568					0	0	0.014410	0	0
ITIH5L	347365	broad.mit.edu	37	X	54784236	54784236	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:54784236C>T	uc004dtj.2	-	8	2301	c.2271G>A	c.(2269-2271)AGG>AGA	p.R757R		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	757	Pro-rich.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						GGACTTGTGTCCTGGAGTTCG	0.512000													15	332					0	0	0.003163	0	0
GJB1	2705	broad.mit.edu	37	X	70444246	70444246	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:70444246G>A	uc004dzf.3	+	2	784	c.689G>A	c.(688-690)CGC>CAC	p.R230H	BCYRN1_uc011mpt.1_Intron|GJB1_uc004dzg.3_Missense_Mutation_p.R230H	NM_001097642	NP_001091111	P08034	CXB1_HUMAN	gap junction protein, beta 1, 32kDa	230	Cytoplasmic (Probable).		R -> C (in CMTX1; localized mainly on the cell membrane forming gap junction-like plaques).|R -> L (in CMTX1; localized mainly on the cell membrane forming gap junction-like plaques).		cell-cell signaling|cellular membrane organization|gap junction assembly|nervous system development	connexon complex|endoplasmic reticulum membrane|integral to membrane	gap junction channel activity			breast(1)	1	Renal(35;0.156)					CCACCTTCCCGCAAGGGCTCG	0.602000													6	105					0	0	0.001168	0	0
ZMYM3	9203	broad.mit.edu	37	X	70466312	70466312	+	Silent	SNP	T	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:70466312T>G	uc004dzh.1	-	15	2550	c.2463A>C	c.(2461-2463)CCA>CCC	p.P821P	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Silent_p.P821P|ZMYM3_uc004dzj.1_Silent_p.P809P	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	821					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					CTGGGGGTGGTGGGGGTGGAG	0.582000													6	32					0	0	0.010504	0	0
CAPN6	827	broad.mit.edu	37	X	110491947	110491947	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:110491947G>A	uc004epc.1	-	10	1502	c.1334C>T	c.(1333-1335)GCT>GTT	p.A445V	CAPN6_uc011msu.1_Missense_Mutation_p.A190V	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	445	Domain III.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						GGAAGTCCCAGCACGCTCCTG	0.483000													4	338					0	0	0.001168	0	0
AMOT	154796	broad.mit.edu	37	X	112058796	112058796	+	Silent	SNP	C	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:112058796C>T	uc004epr.2	-	2	1182	c.1182G>A	c.(1180-1182)CAG>CAA	p.Q394Q	AMOT_uc004eps.2_5'UTR|AMOT_uc004ept.1_Silent_p.Q394Q	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	394					actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						gctgctgctgctgttgttggt	0.338000													4	100					0	0	0.009096	0	0
BCORL1	63035	broad.mit.edu	37	X	129189856	129189856	+	Silent	SNP	T	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:129189856T>C	uc004evb.1	+	13	4995	c.4881T>C	c.(4879-4881)GAT>GAC	p.D1627D	BCORL1_uc004evc.1_Silent_p.D463D	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1627					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						TCTTTTCCGATGTCTTGAAGA	0.567000													6	666					0	0	0.003080	0	0
HMGB3	3149	broad.mit.edu	37	X	150156360	150156360	+	Silent	SNP	G	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:150156360G>A	uc004fep.2	+	5	668	c.576G>A	c.(574-576)GAG>GAA	p.E192E	HMGB3_uc004feq.2_3'UTR|HMGB3_uc004fer.2_Silent_p.E192E	NM_005342	NP_005333	O15347	HMGB3_HUMAN	high-mobility group box 3	192	Asp/Glu-rich (acidic).				DNA recombination|multicellular organismal development	chromosome|nucleus	DNA bending activity|double-stranded DNA binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					aggaagaagaggaggaggagg	0.279000													5	208					0	0	0.001984	0	0
FLNA	2316	broad.mit.edu	37	X	153581753	153581753	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:153581753G>T	uc004fkk.2	-	37	6182	c.5933C>A	c.(5932-5934)ACG>AAG	p.T1978K	FLNA_uc004fki.2_Missense_Mutation_p.T21K|FLNA_uc011mzn.1_Missense_Mutation_p.T111K|FLNA_uc010nuu.1_Missense_Mutation_p.T1970K	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	1978	Filamin 18.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCTGAGATCCGTCTCTGAGAT	0.632000													20	301					7.45023e-12	7.96403e-12	0.010504	1	0
PLEKHG5	57449	broad.mit.edu	37	1	6536011	6536013	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:6536011_6536013delCTC	uc001ano.1	-	4	396_398	c.295_297delGAG	c.(295-297)GAGdel	p.E99del	PLEKHG5_uc001ann.1_In_Frame_Del_p.E80del|PLEKHG5_uc001anq.1_In_Frame_Del_p.E120del|PLEKHG5_uc001anp.1_In_Frame_Del_p.E120del|PLEKHG5_uc009vma.1_5'UTR|PLEKHG5_uc010nzr.1_In_Frame_Del_p.E112del|PLEKHG5_uc001ank.1_In_Frame_Del_p.E43del|PLEKHG5_uc009vmb.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anl.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anm.1_In_Frame_Del_p.E43del	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	99	Poly-Glu.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CCACAGAGCTCTCCTCCTCCTCC	0.631											OREG0013041	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	374	---	---	---	---					
PHF13	148479	broad.mit.edu	37	1	6680069	6680071	+	In_Frame_Del	DEL	GAA	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:6680069_6680071delGAA	uc001aob.3	+	3	719_721	c.348_350delGAA	c.(346-351)CTGAAG>CTG	p.K121del		NM_153812	NP_722519	Q86YI8	PHF13_HUMAN	PHD finger protein 13	121	Nuclear localization signal (Probable).				cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		cggacaagctgaagaagaagaag	0.498													9	211	---	---	---	---					
DNAJC11	55735	broad.mit.edu	37	1	6727803	6727804	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:6727803_6727804delTC	uc001aof.2	-	4	449_450	c.343_344delGA	c.(343-345)GAAfs	p.E115fs	DNAJC11_uc010nzt.1_Frame_Shift_Del_p.E77fs|DNAJC11_uc001aog.2_Frame_Shift_Del_p.E115fs|DNAJC11_uc010nzu.1_Frame_Shift_Del_p.E25fs	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	115					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCCTCTCTTCTCTCTCTCTC	0.505													19	216	---	---	---	---					
VAMP3	9341	broad.mit.edu	37	1	7838212	7838214	+	In_Frame_Del	DEL	TCA	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:7838212_7838214delTCA	uc001aol.2	+	4	381_383	c.266_268delTCA	c.(265-270)TTCATC>TTC	p.I94del		NM_004781	NP_004772	Q15836	VAMP3_HUMAN	vesicle-associated membrane protein 3	94	Helical; Anchor for type IV membrane protein; (Potential).				cellular membrane fusion|positive regulation of receptor recycling|protein complex assembly|protein transport|retrograde transport, endosome to Golgi|substrate adhesion-dependent cell spreading|vesicle docking involved in exocytosis	cell junction|clathrin-coated vesicle|integral to membrane|recycling endosome|synapse|synaptosome	protein binding				0	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;6.33e-69)|GBM - Glioblastoma multiforme(8;2.07e-34)|Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.38e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000805)|KIRC - Kidney renal clear cell carcinoma(229;0.000917)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		CTGGTTATCTTCATCATCATCAT	0.365													9	792	---	---	---	---					
TNFRSF9	3604	broad.mit.edu	37	1	7980912	7980914	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:7980912_7980914delCTT	uc001aot.2	-	8	877_879	c.749_751delAAG	c.(748-753)GAAGGA>GGA	p.E250del		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	250	Cytoplasmic (Potential).|Interaction with LRR-1.		E -> G (in a colorectal cancer sample; somatic mutation).		induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity	p.E250G(1)		large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		TCACATCCTCCTTCTTCTTCTTC	0.379													9	518	---	---	---	---					
CLSTN1	22883	broad.mit.edu	37	1	9790640	9790642	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:9790640_9790642delCCT	uc001aqh.2	-	19	3629_3631	c.2870_2872delAGG	c.(2869-2874)GAGGGG>GGG	p.E957del	CLSTN1_uc001aqi.2_In_Frame_Del_p.E947del|CLSTN1_uc010oag.1_In_Frame_Del_p.E938del|CLSTN1_uc001aqf.2_In_Frame_Del_p.E221del	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	957	Glu-rich (highly acidic).|Cytoplasmic (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		CCCTGCTCCCCCTCCTCCTCCTC	0.557													10	268	---	---	---	---					
MST1P9	11223	broad.mit.edu	37	1	17085995	17085996	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:17085995_17085996insC	uc010ock.1	-	7	901_902	c.901_902insG	c.(901-903)GCGfs	p.A301fs	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCCAACGCCCGCCCCCCCGCCC	0.658													11	189	---	---	---	---					
USP48	84196	broad.mit.edu	37	1	22083040	22083040	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:22083040delT	uc001bfb.2	-	3	649	c.411delA	c.(409-411)AAAfs	p.K137fs	USP48_uc010odq.1_Frame_Shift_Del_p.K137fs|USP48_uc009vqc.2_Frame_Shift_Del_p.K137fs|USP48_uc001bfc.2_Frame_Shift_Del_p.K137fs|USP48_uc001bfe.1_Frame_Shift_Del_p.K137fs|USP48_uc001bff.2_Frame_Shift_Del_p.K137fs	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	137					ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		TCCACCCACCTTTTTCTTCTT	0.358													7	912	---	---	---	---					
UBXN11	91544	broad.mit.edu	37	1	26608843	26608844	+	In_Frame_Ins	INS	-	GGGACA	GGGACA	rs151149897	by1000genomes	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:26608843_26608844insGGGACA	uc001blw.2	-	16	1782_1783	c.1509_1510insTGTCCC	c.(1507-1512)insTGTCCC	p.503_504insCP	UBXN11_uc001blz.1_Intron|UBXN11_uc001blv.2_In_Frame_Ins_p.465_466insCP|UBXN11_uc001bly.2_In_Frame_Ins_p.383_384insCP|UBXN11_uc001blx.2_In_Frame_Ins_p.261_262insCP|UBXN11_uc001bma.2_In_Frame_Ins_p.470_471insCP	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	503_504	Pro-rich.|3 X 8 AA tandem repeats of P-G-P-G-P-G-P- S.|3.					cytoplasm|cytoskeleton				ovary(1)	1						ggaccgggaccgggactggggc	0.287													8	101	---	---	---	---					
B4GALT2	8704	broad.mit.edu	37	1	44447007	44447009	+	In_Frame_Del	DEL	AGC	-	-	rs149892509		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:44447007_44447009delAGC	uc001clg.2	+	2	545_547	c.175_177delAGC	c.(175-177)AGCdel	p.S65del	B4GALT2_uc001clh.2_In_Frame_Del_p.A14del|B4GALT2_uc010okl.1_In_Frame_Del_p.S94del|B4GALT2_uc001cli.2_In_Frame_Del_p.S65del	NM_003780	NP_003771	O60909	B4GT2_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	65	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			N-Acetyl-D-glucosamine(DB00141)	CCCAGCTGCTagcagcagcagca	0.616													7	218	---	---	---	---					
ROR1	4919	broad.mit.edu	37	1	64608186	64608187	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:64608186_64608187delCA	uc001dbj.2	+	7	1426_1427	c.1027_1028delCA	c.(1027-1029)CACfs	p.H343fs	ROR1_uc001dbi.3_Frame_Shift_Del_p.H343fs|uc001dbl.2_Intron	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	343	Kringle.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CCAGTATCCCCACACACACACT	0.554													10	408	---	---	---	---					
ADAMTSL4	54507	broad.mit.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	-	-	rs149280379		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:150530506delG	uc001eux.2	+	14	2499	c.2263delG	c.(2263-2265)GGGfs	p.G755fs	ADAMTSL4_uc001euw.2_Frame_Shift_Del_p.G755fs|ADAMTSL4_uc009wlw.2_Frame_Shift_Del_p.G778fs|ADAMTSL4_uc010pcg.1_Frame_Shift_Del_p.G716fs|ADAMTSL4_uc009wlx.2_5'UTR	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	755	TSP type-1 2.				apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GCAGGAATTTGGGGGGGGTGG	0.692													10	428	---	---	---	---					
LCE4A	199834	broad.mit.edu	37	1	152681693	152681698	+	In_Frame_Del	DEL	TGTGGT	-	-	rs113617356		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:152681693_152681698delTGTGGT	uc001fak.2	+	1	171_176	c.142_147delTGTGGT	c.(142-147)TGTGGTdel	p.CG48del		NM_178356	NP_848133	Q5TA78	LCE4A_HUMAN	late cornified envelope 4A	48_49	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.116)			CTCTGGGGGCTGTGGTTGCTGCAGCT	0.578													7	512	---	---	---	---					
PVRL4	81607	broad.mit.edu	37	1	161044104	161044106	+	In_Frame_Del	DEL	CCA	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:161044104_161044106delCCA	uc001fxo.2	-	6	1357_1359	c.1058_1060delTGG	c.(1057-1062)GTGGGT>GGT	p.V353del	PVRL4_uc010pjy.1_In_Frame_Del_p.V32del|PVRL4_uc010pjz.1_In_Frame_Del_p.V87del	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	353	Helical; (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			GCGATCACACCCACCACCACCAC	0.606													9	418	---	---	---	---					
IPO9	55705	broad.mit.edu	37	1	201843998	201844000	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:201843998_201844000delGAG	uc001gwz.2	+	22	2922_2924	c.2872_2874delGAG	c.(2872-2874)GAGdel	p.E962del		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	962					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						ggaggaggaagaggaggaggagg	0.330													16	390	---	---	---	---					
SYT2	127833	broad.mit.edu	37	1	202573647	202573649	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:202573647_202573649delTTC	uc001gye.2	-	3	472_474	c.279_281delGAA	c.(277-282)AAGAAC>AAC	p.K93del	SYT2_uc010pqb.1_In_Frame_Del_p.K93del|SYT2_uc009xaf.2_Intron	NM_001136504	NP_001129976	Q8N9I0	SYT2_HUMAN	synaptotagmin II	93	Cytoplasmic (Potential).				neurotransmitter secretion	cell junction|chromaffin granule membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	protein binding|transporter activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.169)		Botulinum Toxin Type B(DB00042)	ctccttcttgttcttcttcttct	0.483													10	453	---	---	---	---					
PTPN14	5784	broad.mit.edu	37	1	214557049	214557051	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr1:214557049_214557051delCCT	uc001hkk.1	-	13	2418_2420	c.2147_2149delAGG	c.(2146-2151)GAGGCT>GCT	p.E716del	PTPN14_uc010pty.1_In_Frame_Del_p.E617del	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	716	Poly-Glu.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GATTCTGGAGCCTCCTCCTCCTC	0.626													13	264	---	---	---	---					
SFMBT2	57713	broad.mit.edu	37	10	7212995	7212997	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr10:7212995_7212997delCTC	uc009xio.1	-	20	2528_2530	c.2437_2439delGAG	c.(2437-2439)GAGdel	p.E813del	SFMBT2_uc001ijn.1_In_Frame_Del_p.E813del|SFMBT2_uc010qay.1_In_Frame_Del_p.E648del	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	813					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GAACCAGTCTCTCCTCCTCCTCC	0.596													8	590	---	---	---	---					
PCDH15	65217	broad.mit.edu	37	10	55587198	55587200	+	In_Frame_Del	DEL	GGC	-	-	rs12246234		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr10:55587198_55587200delGGC	uc001jju.1	-	32	4715_4717	c.4320_4322delGCC	c.(4318-4323)CCGCCT>CCT	p.1440_1441PP>P	PCDH15_uc010qhq.1_In_Frame_Del_p.1445_1446PP>P|PCDH15_uc010qhr.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc010qhs.1_In_Frame_Del_p.1452_1453PP>P|PCDH15_uc010qht.1_In_Frame_Del_p.1447_1448PP>P|PCDH15_uc010qhu.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_In_Frame_Del_p.1437_1438PP>P|PCDH15_uc010qhw.1_In_Frame_Del_p.1400_1401PP>P|PCDH15_uc010qhx.1_In_Frame_Del_p.1369_1370PP>P|PCDH15_uc010qhy.1_In_Frame_Del_p.1445_1446PP>P|PCDH15_uc010qhz.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc010qia.1_In_Frame_Del_p.1418_1419PP>P|PCDH15_uc010qib.1_In_Frame_Del_p.1415_1416PP>P	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1440_1441	Poly-Pro.|Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACCTggcggaggcggcggcggcg	0.438										HNSCC(58;0.16)			7	284	---	---	---	---					
KIAA0913	23053	broad.mit.edu	37	10	75560463	75560464	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr10:75560463_75560464insC	uc009xrl.2	+	24	5109_5110	c.5077_5078insC	c.(5077-5079)TCCfs	p.S1693fs	KIAA0913_uc001jve.2_Frame_Shift_Ins_p.S1698fs|KIAA0913_uc001jvf.2_Frame_Shift_Ins_p.S1511fs|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Frame_Shift_Ins_p.S1120fs|KIAA0913_uc010qkr.1_Frame_Shift_Ins_p.S1108fs|KIAA0913_uc001jvj.2_Frame_Shift_Ins_p.S1108fs|KIAA0913_uc009xrn.1_Frame_Shift_Ins_p.S104fs	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	1693							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					CTTCTCCCGCTCCCCCCCCTAC	0.604													13	496	---	---	---	---					
ZMIZ1	57178	broad.mit.edu	37	10	81072446	81072446	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr10:81072446delC	uc001kaf.2	+	25	3716	c.3144delC	c.(3142-3144)GACfs	p.D1048fs	ZMIZ1_uc001kag.2_Frame_Shift_Del_p.D924fs|ZMIZ1_uc010qlq.1_Frame_Shift_Del_p.D114fs	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	1048					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CTTATCTGGACCCCCCCGACC	0.557													13	858	---	---	---	---					
SCD	6319	broad.mit.edu	37	10	102107836	102107838	+	In_Frame_Del	DEL	ACC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr10:102107836_102107838delACC	uc001kqy.2	+	2	533_535	c.43_45delACC	c.(43-45)ACCdel	p.T19del		NM_005063	NP_005054	O00767	ACOD_HUMAN	stearoyl-CoA desaturase 1	19	Cytoplasmic (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity				0		Colorectal(252;0.0323)		Epithelial(162;1.97e-10)|all cancers(201;1.73e-08)		TAGCTCCTATACCACCACCACCA	0.581													8	505	---	---	---	---					
TSPAN4	7106	broad.mit.edu	37	11	864443	864445	+	In_Frame_Del	DEL	CTG	-	-	rs61867552	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:864443_864445delCTG	uc001lsd.1	+	5	471_473	c.262_264delCTG	c.(262-264)CTGdel	p.L92del	TSPAN4_uc001lse.1_In_Frame_Del_p.L28del|TSPAN4_uc001lsf.1_In_Frame_Del_p.L92del|TSPAN4_uc001lsg.1_In_Frame_Del_p.L92del|TSPAN4_uc001lsh.1_In_Frame_Del_p.L92del|TSPAN4_uc001lsi.1_In_Frame_Del_p.L92del|TSPAN4_uc001lsj.1_In_Frame_Del_p.L92del	NM_003271	NP_003262	O14817	TSN4_HUMAN	tetraspanin 4 isoform a	92	Helical; (Potential).				protein complex assembly	integral to plasma membrane				breast(1)	1		all_cancers(49;2.64e-08)|all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)		all cancers(45;4.32e-25)|Epithelial(43;3.29e-24)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACAGTTCTTCCTGCTGCTGCTGC	0.650													11	377	---	---	---	---					
OR10A2	341276	broad.mit.edu	37	11	6891253	6891255	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:6891253_6891255delTTC	uc001meu.1	+	1	268_270	c.268_270delTTC	c.(268-270)TTCdel	p.F94del		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	94	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TCAGATGTATTTCTTCTTCTTCT	0.517													7	444	---	---	---	---					
CPSF7	79869	broad.mit.edu	37	11	61183765	61183767	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:61183765_61183767delAGG	uc001nrq.2	-	6	909_911	c.775_777delCCT	c.(775-777)CCTdel	p.P259del	CPSF7_uc001nro.2_In_Frame_Del_p.P250del|CPSF7_uc001nrp.2_In_Frame_Del_p.P302del|CPSF7_uc001nrr.2_In_Frame_Del_p.P250del|CPSF7_uc001nrs.1_In_Frame_Del_p.P160del	NM_001136040	NP_001129512	Q8N684	CPSF7_HUMAN	pre-mRNA cleavage factor I, 59 kDa subunit	259	Pro-rich.				mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	mRNA cleavage factor complex	nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						AGTGGATACCAGGAGGAGGAGGA	0.611													9	248	---	---	---	---					
UVRAG	7405	broad.mit.edu	37	11	75694430	75694431	+	Splice_Site	INS	-	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr11:75694430_75694431insA	uc001oxc.2	+	8	941	c.700_splice	c.e8-1	p.K234_splice	UVRAG_uc010rrw.1_Splice_Site_p.K133_splice|UVRAG_uc001oxd.2_Splice_Site|UVRAG_uc010rrx.1_5'UTR|UVRAG_uc009yuh.1_Splice_Site	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated						DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						TATTTATTTAGAAAAAAAAAAG	0.302													17	167	---	---	---	---					
FAM60A	58516	broad.mit.edu	37	12	31448178	31448178	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:31448178delT	uc010sjz.1	-	3	457	c.218delA	c.(217-219)AACfs	p.N73fs	FAM60A_uc001rkd.2_Frame_Shift_Del_p.N73fs|FAM60A_uc010ska.1_Frame_Shift_Del_p.N73fs|FAM60A_uc001rke.2_Frame_Shift_Del_p.N73fs|FAM60A_uc010skb.1_Intron|FAM60A_uc001rkc.2_Frame_Shift_Del_p.N98fs	NM_021238	NP_067061	Q9NP50	FA60A_HUMAN	family with sequence similarity 60, member A	73											0	all_cancers(9;5.22e-13)|all_epithelial(9;4e-13)|all_lung(12;1.2e-11)|Lung NSC(12;2.17e-09)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0207)|Lung SC(12;0.0592)|Esophageal squamous(101;0.162)					ATGATTCCAGTTTTTTTTTGA	0.358													7	118	---	---	---	---					
PRICKLE1	144165	broad.mit.edu	37	12	42853801	42853803	+	In_Frame_Del	DEL	GAG	-	-	rs35854729	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:42853801_42853803delGAG	uc010skv.1	-	8	2591_2593	c.2304_2306delCTC	c.(2302-2307)TCCTCT>TCT	p.768_769SS>S	PRICKLE1_uc001rnl.2_In_Frame_Del_p.768_769SS>S|PRICKLE1_uc010skw.1_In_Frame_Del_p.768_769SS>S|PRICKLE1_uc001rnm.2_In_Frame_Del_p.768_769SS>S|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	768_769	Ser-rich.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		CGAGTCGGAAGAGGAGGAGGAGG	0.507													7	545	---	---	---	---					
MLL2	8085	broad.mit.edu	37	12	49433772	49433773	+	Frame_Shift_Ins	INS	-	G	G	rs35050033		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:49433772_49433773insG	uc001rta.3	-	31	7780_7781	c.7780_7781insC	c.(7780-7782)CTGfs	p.L2594fs		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2594	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GCTGGGCCCCAGGGGGCTGCCC	0.649			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			11	62	---	---	---	---					
TUBA1C	84790	broad.mit.edu	37	12	49663412	49663413	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:49663412_49663413delGG	uc001rtt.1	+	2	268_269	c.168_169delGG	c.(166-171)ACGGGTfs	p.T56fs	TUBA1C_uc001rts.2_Frame_Shift_Del_p.T21fs|TUBA1C_uc010smh.1_Frame_Shift_Del_p.T126fs	NM_032704	NP_116093	Q9BQE3	TBA1C_HUMAN	tubulin alpha 6	56_57					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0						TCAGTGAAACGGGTGCTGGCAA	0.550													50	565	---	---	---	---					
SMARCC2	6601	broad.mit.edu	37	12	56558379	56558381	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:56558379_56558381delAGG	uc001skb.2	-	27	3380_3382	c.3274_3276delCCT	c.(3274-3276)CCTdel	p.P1092del	SMARCC2_uc001skd.2_Intron|SMARCC2_uc001ska.2_Intron|SMARCC2_uc001skc.2_Intron|SMARCC2_uc010sqf.1_Intron	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1092	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			TGGATGGAGCAGGAGGAGGAGGA	0.591													9	160	---	---	---	---					
SLC39A5	283375	broad.mit.edu	37	12	56628997	56628999	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:56628997_56628999delCTG	uc010sqj.1	+	7	948_950	c.691_693delCTG	c.(691-693)CTGdel	p.L234del	SLC39A5_uc010sqi.1_In_Frame_Del_p.L125del|SLC39A5_uc010sqk.1_In_Frame_Del_p.L234del	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	234	Cytoplasmic (Potential).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						TCCCCTATCCCTGCTGCTGCTGC	0.635													7	644	---	---	---	---					
POP5	51367	broad.mit.edu	37	12	121017154	121017156	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr12:121017154_121017156delCTC	uc001tys.2	-	5	489_491	c.457_459delGAG	c.(457-459)GAGdel	p.E153del	POP5_uc001tyt.2_In_Frame_Del_p.E103del	NM_015918	NP_057002	Q969H6	POP5_HUMAN	processing of precursor 5 isoform a	153					tRNA processing		protein binding|ribonuclease P activity				0	all_neural(191;0.077)|Medulloblastoma(191;0.0922)					CCTCACCTGACTCCTCCTCCTCC	0.517													7	475	---	---	---	---					
TPTE2	93492	broad.mit.edu	37	13	20041394	20041394	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr13:20041394delA	uc001umd.2	-	8	694	c.483delT	c.(481-483)TTTfs	p.F161fs	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Intron|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	161	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ACTTAATGTCAAAAAAAATGT	0.303													9	281	---	---	---	---					
TSC22D1	8848	broad.mit.edu	37	13	45148691	45148693	+	In_Frame_Del	DEL	TGT	-	-	rs148625973		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr13:45148691_45148693delTGT	uc001uzn.3	-	1	2009_2011	c.1518_1520delACA	c.(1516-1521)CAACAG>CAG	p.506_507QQ>Q	TSC22D1_uc001uzo.1_In_Frame_Del_p.506_507QQ>Q	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	506_507	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		TGgttgttgctgttgttgttgtt	0.404													7	431	---	---	---	---					
FAM155A	728215	broad.mit.edu	37	13	108518338	108518338	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr13:108518338delC	uc001vql.2	-	1	1123	c.607delG	c.(607-609)GACfs	p.D203fs		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	203						integral to membrane	binding			skin(1)	1						TCCTGCCCGTCCCCCCCGGCC	0.607													12	508	---	---	---	---					
PTPN21	11099	broad.mit.edu	37	14	88940113	88940113	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:88940113delT	uc001xwv.3	-	14	2876	c.2545delA	c.(2545-2547)ATTfs	p.I849fs	PTPN21_uc010twc.1_Frame_Shift_Del_p.I645fs	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	849						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						AGAGGACCAATTTTTTTTGCA	0.393													7	340	---	---	---	---					
FOXN3	1112	broad.mit.edu	37	14	89629149	89629151	+	In_Frame_Del	DEL	GAG	-	-	rs139532153		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:89629149_89629151delGAG	uc001xxo.3	-	7	1217_1219	c.1080_1082delCTC	c.(1078-1083)TCCTCA>TCA	p.360_361SS>S	FOXN3_uc001xxn.3_In_Frame_Del_p.338_339SS>S|FOXN3_uc010atk.2_In_Frame_Del_p.338_339SS>S	NM_001085471	NP_001078940	O00409	FOXN3_HUMAN	checkpoint suppressor 1 isoform 1	360_361					DNA damage checkpoint|embryo development|G2 phase of mitotic cell cycle|negative regulation of transcription, DNA-dependent|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein C-terminus binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(2)|ovary(1)	3						GTCGTCGGCTGAGGAGGAGGAGG	0.650													8	114	---	---	---	---					
C14orf49	161176	broad.mit.edu	37	14	95921888	95921890	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:95921888_95921890delCTC	uc001yei.3	-	5	976_978	c.961_963delGAG	c.(961-963)GAGdel	p.E321del	C14orf49_uc010avi.2_In_Frame_Del_p.E321del|C14orf49_uc001yej.1_In_Frame_Del_p.E321del	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	321	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CCCGCAGCCGCTCCTCCTCCTCC	0.616													9	401	---	---	---	---					
CCNK	8812	broad.mit.edu	37	14	99976587	99976588	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:99976587_99976588insG	uc001ygi.3	+	11	1341_1342	c.1211_1212insG	c.(1210-1212)CCGfs	p.P404fs	CCNK_uc001ygg.3_Intron	NM_001099402	NP_001092872	O75909	CCNK_HUMAN	cyclin K isoform 1	404					cell division|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein kinase binding				0		all_cancers(154;0.224)|all_epithelial(191;0.0643)|Melanoma(154;0.0866)				ATTCCCCCTCCGGCCCACCCGG	0.713													14	40	---	---	---	---					
HSP90AA1	3320	broad.mit.edu	37	14	102551161	102551163	+	In_Frame_Del	DEL	TCT	-	-	rs55793809	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:102551161_102551163delTCT	uc001yku.3	-	5	1026_1028	c.836_838delAGA	c.(835-840)AAGATT>ATT	p.K279del	HSP90AA1_uc001ykv.3_In_Frame_Del_p.K401del|HSP90AA1_uc001ykw.1_In_Frame_Del_p.K100del|HSP90AA1_uc001ykx.1_In_Frame_Del_p.K268del	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	279					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	ttttccttaatcttcttcttctt	0.256													7	115	---	---	---	---					
RAGE	5891	broad.mit.edu	37	14	102718303	102718303	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr14:102718303delT	uc001ylm.2	-	5	539	c.313delA	c.(313-315)ATTfs	p.I105fs	RAGE_uc010txv.1_Frame_Shift_Del_p.I75fs|RAGE_uc001yln.2_5'UTR	NM_014226	NP_055041	Q9UQ07	MOK_HUMAN	MAPK/MAK/MRK overlapping kinase	105	Protein kinase.				signal transduction	Golgi apparatus	ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						TAGTGCATAATTTTTTTTTCT	0.323													9	360	---	---	---	---					
TTBK2	146057	broad.mit.edu	37	15	43038023	43038024	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr15:43038023_43038024insT	uc001zqo.2	-	15	4143_4144	c.3704_3705insA	c.(3703-3705)AAGfs	p.K1235fs	TTBK2_uc010bcy.2_Frame_Shift_Ins_p.K1166fs|uc001zqn.2_5'Flank	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1235					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		CTGGCTTACTCTTCCCTTGGGG	0.535													20	617	---	---	---	---					
TTBK2	146057	broad.mit.edu	37	15	43038025	43038026	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr15:43038025_43038026insC	uc001zqo.2	-	15	4141_4142	c.3702_3703insG	c.(3700-3705)GGGAAGfs	p.G1234fs	TTBK2_uc010bcy.2_Frame_Shift_Ins_p.G1165fs|uc001zqn.2_5'Flank	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1234_1235					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		GGCTTACTCTTCCCTTGGGGGG	0.540													8	637	---	---	---	---					
VPS33B	26276	broad.mit.edu	37	15	91550236	91550238	+	In_Frame_Del	DEL	TCC	-	-	rs147271815		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr15:91550236_91550238delTCC	uc002bqp.1	-	9	996_998	c.642_644delGGA	c.(640-645)GAGGAT>GAT	p.E214del	VPS33B_uc002bqq.1_In_Frame_Del_p.E123del|VPS33B_uc010uqu.1_In_Frame_Del_p.E187del	NM_018668	NP_061138	Q9H267	VP33B_HUMAN	vacuolar protein sorting 33B (yeast homolog))	214					cellular membrane fusion|lysosome localization|melanosome localization|platelet alpha granule organization|protein transport|vesicle docking involved in exocytosis	late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm|platelet alpha granule	protein binding			ovary(2)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					GGTTTCGCCATCCTCCTCCTCCT	0.522													11	533	---	---	---	---					
C16orf62	57020	broad.mit.edu	37	16	19580800	19580802	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:19580800_19580802delTCC	uc002dgn.1	+	3	184_186	c.172_174delTCC	c.(172-174)TCCdel	p.S64del	C16orf62_uc002dgo.1_In_Frame_Del_p.S64del|C16orf62_uc010vas.1_5'UTR|C16orf62_uc002dgm.1_In_Frame_Del_p.S64del	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	64	Ser-rich.					integral to membrane				ovary(1)	1						TTCTTCCACGTCCTCCTCCTCCT	0.562													8	222	---	---	---	---					
IL4R	3566	broad.mit.edu	37	16	27373787	27373789	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:27373787_27373789delGAG	uc002don.2	+	11	1356_1358	c.1114_1116delGAG	c.(1114-1116)GAGdel	p.E376del	IL4R_uc002dop.3_In_Frame_Del_p.E361del|IL4R_uc010bxy.2_In_Frame_Del_p.E376del|IL4R_uc002doo.2_In_Frame_Del_p.E216del	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	376	Poly-Glu.|Cytoplasmic (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						GGTGGAGTGTGAGGAGGAGGAGG	0.591													8	227	---	---	---	---					
EIF3CL	728689	broad.mit.edu	37	16	28734579	28734581	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:28734579_28734581delGAG	uc010byj.2	+	9	960_962	c.871_873delGAG	c.(871-873)GAGdel	p.E295del	uc010vct.1_Intron|EIF3CL_uc010byi.2_In_Frame_Del_p.E294del|EIF3CL_uc002dqs.3_In_Frame_Del_p.E294del|EIF3C_uc002dqt.3_In_Frame_Del_p.E294del|EIF3CL_uc010vcy.1_In_Frame_Del_p.E284del|EIF3C_uc002dqu.3_In_Frame_Del_p.E294del|EIF3CL_uc002dqv.3_In_Frame_Del_p.E40del	NM_001099661	NP_001093131	B5ME19	B5ME19_HUMAN	eukaryotic translation initiation factor 3,	295						eukaryotic translation initiation factor 3 complex	translation initiation factor activity				0						GCGCCTGGATGAGGAGGAGGAGG	0.562													14	2362	---	---	---	---					
SETD1A	9739	broad.mit.edu	37	16	30982809	30982811	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:30982809_30982811delTCC	uc002ead.1	+	13	3813_3815	c.3127_3129delTCC	c.(3127-3129)TCCdel	p.S1058del		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1058	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						CAGctcctcatcctcctcctcct	0.389													13	218	---	---	---	---					
COQ9	57017	broad.mit.edu	37	16	57486732	57486734	+	In_Frame_Del	DEL	GAG	-	-	rs149029279		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:57486732_57486734delGAG	uc002elq.2	+	3	278_280	c.262_264delGAG	c.(262-264)GAGdel	p.E91del	COQ9_uc002elp.1_In_Frame_Del_p.E91del|COQ9_uc010vhn.1_In_Frame_Del_p.E91del|COQ9_uc010vho.1_In_Frame_Del_p.E91del|COQ9_uc010vhp.1_In_Frame_Del_p.E91del|COQ9_uc002elr.2_In_Frame_Del_p.E91del	NM_020312	NP_064708	O75208	COQ9_HUMAN	coenzyme Q9 homolog precursor	91					ubiquinone biosynthetic process	mitochondrion				breast(1)	1						CCAGGGCGGCGAGGAGGAGGAGG	0.576													9	497	---	---	---	---					
SLC9A5	6553	broad.mit.edu	37	16	67300017	67300019	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:67300017_67300019delGAG	uc002esm.2	+	15	2170_2172	c.2107_2109delGAG	c.(2107-2109)GAGdel	p.E708del	SLC9A5_uc010cee.2_In_Frame_Del_p.E413del|SLC9A5_uc010vji.1_In_Frame_Del_p.E212del	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	708					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		CGTGGAGTCTGAGGAGGAGGAGG	0.571													22	277	---	---	---	---					
RANBP10	57610	broad.mit.edu	37	16	67763279	67763281	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr16:67763279_67763281delGAG	uc002eud.2	-	10	1370_1372	c.1254_1256delCTC	c.(1252-1257)TCCTCG>TCG	p.418_419SS>S	RANBP10_uc010ceo.2_In_Frame_Del_p.189_190SS>S|RANBP10_uc010vju.1_In_Frame_Del_p.362_363SS>S|RANBP10_uc010vjv.1_In_Frame_Del_p.301_302SS>S|RANBP10_uc010vjw.1_In_Frame_Del_p.79_80SS>S	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	418_419	Ser-rich.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		ggaagaggacgaggaggaggagg	0.414													7	155	---	---	---	---					
FXR2	9513	broad.mit.edu	37	17	7495872	7495874	+	In_Frame_Del	DEL	CGG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:7495872_7495874delCGG	uc002gia.1	-	15	2000_2002	c.1773_1775delCCG	c.(1771-1776)CGCCGT>CGT	p.591_592RR>R	MPDU1_uc010vuc.1_3'UTR|SOX15_uc002ghy.1_5'Flank|SOX15_uc002ghz.1_5'Flank	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	591_592	Poly-Arg.					cytosolic large ribosomal subunit	protein binding|RNA binding				0				READ - Rectum adenocarcinoma(115;0.17)		ACCACGGTTACGGCGGCGGCGGC	0.547													13	799	---	---	---	---					
CHD3	1107	broad.mit.edu	37	17	7801857	7801859	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:7801857_7801859delAAG	uc002gje.2	+	13	2245_2247	c.2095_2097delAAG	c.(2095-2097)AAGdel	p.K703del	CHD3_uc002gjd.2_In_Frame_Del_p.K762del|CHD3_uc002gjf.2_In_Frame_Del_p.K703del	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	703	Poly-Lys.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CCGCAAGTATAAGAAGAAGAAGA	0.488													10	233	---	---	---	---					
ZNF207	7756	broad.mit.edu	37	17	30677314	30677316	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:30677314_30677316delAAG	uc002hhh.3	+	1	158_160	c.10_12delAAG	c.(10-12)AAGdel	p.K7del	ZNF207_uc002hhj.3_In_Frame_Del_p.K7del|ZNF207_uc002hhi.3_In_Frame_Del_p.K7del|ZNF207_uc010csz.2_5'UTR|ZNF207_uc002hhk.1_In_Frame_Del_p.K7del	NM_003457	NP_003448	O43670	ZN207_HUMAN	zinc finger protein 207 isoform a	7						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Breast(31;0.116)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.239)			TATGGGTCGCAAGAAGAAGAAGC	0.542													7	596	---	---	---	---					
KRT10	3858	broad.mit.edu	37	17	38978766	38978768	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:38978766_38978768delTCC	uc002hvi.2	-	1	96_98	c.70_72delGGA	c.(70-72)GGAdel	p.G24del	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	24	Head.|Gly-rich.			Missing (in Ref. 1; AAA60544).	epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				ctcctccacatcctcctcctcct	0.409													18	119	---	---	---	---					
HOXB2	3212	broad.mit.edu	37	17	46622130	46622132	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:46622130_46622132delAGG	uc002inm.2	-	1	262_264	c.142_144delCCT	c.(142-144)CCTdel	p.P48del		NM_002145	NP_002136	P14652	HXB2_HUMAN	homeobox B2	48					blood circulation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TTTGCTCGAAAGGAGGAGGAGGA	0.542													9	621	---	---	---	---					
XYLT2	64132	broad.mit.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:48433967delC	uc002iqo.2	+	8	1687	c.1578delC	c.(1576-1578)TACfs	p.Y526fs	XYLT2_uc010dbo.2_RNA	NM_022167	NP_071450	Q9H1B5	XYLT2_HUMAN	xylosyltransferase II	526	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			pancreas(1)	1	Breast(11;7.18e-19)					ATGGCAGCTACCCCCCCGGCA	0.602													9	517	---	---	---	---					
BZRAP1	9256	broad.mit.edu	37	17	56387404	56387406	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:56387404_56387406delTCC	uc002ivx.3	-	21	4684_4686	c.3813_3815delGGA	c.(3811-3816)GAGGAA>GAA	p.1271_1272EE>E	BZRAP1_uc010dcs.2_In_Frame_Del_p.1211_1212EE>E|BZRAP1_uc010wnt.1_In_Frame_Del_p.1271_1272EE>E	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1271_1272	Poly-Glu.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CAGctcctcttcctcctcctcct	0.468													11	246	---	---	---	---					
FTSJ3	117246	broad.mit.edu	37	17	61899155	61899157	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:61899155_61899157delCTC	uc002jbz.2	-	14	1600_1602	c.1522_1524delGAG	c.(1522-1524)GAGdel	p.E508del	FTSJ3_uc002jca.2_In_Frame_Del_p.E508del	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	508					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						GCAGTGGATTCTCCTCCTCCTCC	0.537													14	630	---	---	---	---					
BPTF	2186	broad.mit.edu	37	17	65822267	65822269	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:65822267_65822269delGAG	uc002jgf.2	+	1	488_490	c.427_429delGAG	c.(427-429)GAGdel	p.E148del	BPTF_uc002jge.2_In_Frame_Del_p.E148del|BPTF_uc010wqm.1_In_Frame_Del_p.E148del	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	148	Glu-rich.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			catggtctccgaggaggaggagg	0.473													10	57	---	---	---	---					
CD300A	11314	broad.mit.edu	37	17	72469708	72469709	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:72469708_72469709insG	uc002jkv.2	+	2	395_396	c.74_75insG	c.(73-75)GCGfs	p.A25fs	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	25	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						AGGACCGTGGCGGGCCCCGTGG	0.569													8	452	---	---	---	---					
CD300A	11314	broad.mit.edu	37	17	72469711	72469712	+	Frame_Shift_Ins	INS	-	GC	GC			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr17:72469711_72469712insGC	uc002jkv.2	+	2	398_399	c.77_78insGC	c.(76-78)GGCfs	p.G26fs	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	26	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						ACCGTGGCGGGCCCCGTGGGGG	0.569													14	432	---	---	---	---					
OSBPL1A	114876	broad.mit.edu	37	18	21745096	21745097	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr18:21745096_21745097insT	uc002kve.2	-	27	2856_2857	c.2682_2683insA	c.(2680-2685)AAACGAfs	p.K894fs	OSBPL1A_uc002kvd.2_Frame_Shift_Ins_p.K381fs|OSBPL1A_uc010xbc.1_Frame_Shift_Ins_p.K512fs	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	894_895	Potential.				cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					TCCTCAAGTCGTTTTTTTTCTT	0.460													7	545	---	---	---	---					
DENND1C	79958	broad.mit.edu	37	19	6477251	6477251	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:6477251delG	uc002mfe.2	-	8	583	c.491delC	c.(490-492)CCTfs	p.P164fs	DENND1C_uc002mfb.2_5'Flank|DENND1C_uc002mfc.2_5'Flank|DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Frame_Shift_Del_p.P120fs	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	164	DENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						CCCCCGGGTAGGGGGGGGGAT	0.672													8	135	---	---	---	---					
LSM14A	26065	broad.mit.edu	37	19	34710340	34710340	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:34710340delC	uc002nvb.3	+	7	1022	c.826delC	c.(826-828)CGGfs	p.R276fs	LSM14A_uc002nva.3_Frame_Shift_Del_p.R276fs|LSM14A_uc010xru.1_Frame_Shift_Del_p.R235fs|LSM14A_uc002nvc.3_Frame_Shift_Del_p.R82fs	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	276					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					TGGGGGTCATCGGGGTGGCAG	0.438													8	564	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	38948159	38948160	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:38948159_38948160delTG	uc002oit.2	+	17	1944_1945	c.1814_1815delTG	c.(1813-1815)CTGfs	p.L605fs	RYR1_uc002oiu.2_Frame_Shift_Del_p.L605fs	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	605	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTATGCTCCCTGTGTGTGTGTA	0.530													9	972	---	---	---	---					
ZC3H4	23211	broad.mit.edu	37	19	47572401	47572403	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:47572401_47572403delCTC	uc002pga.3	-	14	2382_2384	c.2344_2346delGAG	c.(2344-2346)GAGdel	p.E782del	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	782	Potential.						nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		TCCTCGCTCTCTCCTCCTCCTCC	0.700													8	464	---	---	---	---					
FUZ	80199	broad.mit.edu	37	19	50310483	50310485	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:50310483_50310485delCAG	uc002ppq.1	-	11	1285_1287	c.1180_1182delCTG	c.(1180-1182)CTGdel	p.L394del	FUZ_uc002ppr.1_In_Frame_Del_p.L294del|FUZ_uc002pps.1_RNA|FUZ_uc002ppt.1_RNA|FUZ_uc002ppu.1_In_Frame_Del_p.L358del|FUZ_uc002ppv.1_In_Frame_Del_p.L344del	NM_025129	NP_079405	Q9BT04	FUZZY_HUMAN	fuzzy homolog	394	Leu-rich.				cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		TCTGGGGAGACAGCAGCAGCAGC	0.635													8	204	---	---	---	---					
LILRB2	10288	broad.mit.edu	37	19	54780707	54780709	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr19:54780707_54780709delGAG	uc002qfb.2	-	10	1701_1703	c.1435_1437delCTC	c.(1435-1437)CTCdel	p.L479del	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_In_Frame_Del_p.L479del|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_In_Frame_Del_p.L478del|LILRB2_uc010yet.1_In_Frame_Del_p.L363del	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	479	Helical; (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ggatgaggaagaggaggaggagg	0.488													20	504	---	---	---	---					
ATP6V1C2	245973	broad.mit.edu	37	2	10917819	10917820	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:10917819_10917820delAG	uc002ras.2	+	11	1043_1044	c.934_935delAG	c.(934-936)AGAfs	p.R312fs	ATP6V1C2_uc002rat.2_Intron	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	312					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		GCAGACCGACAGAGAGAGAGAG	0.604													31	310	---	---	---	---					
RGPD1	400966	broad.mit.edu	37	2	87211874	87211875	+	Splice_Site	INS	-	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:87211874_87211875insC	uc010fgv.2	+	19	2649	c.2582_splice	c.e19-2	p.V861_splice	RMND5A_uc002srs.3_Intron|RGPD1_uc002ssb.2_Splice_Site_p.V850_splice|RGPD1_uc002ssc.2_Splice_Site_p.V118_splice	NM_001024457	NP_001019628	Q68DN6	RGPD1_HUMAN	RANBP2-like and GRIP domain containing 1						intracellular transport		binding				0						tttttttttttAGTTGCAACTA	0.312													7	275	---	---	---	---					
TMEM127	55654	broad.mit.edu	37	2	96919781	96919783	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:96919781_96919783delTGC	uc002svq.2	-	4	737_739	c.480_482delGCA	c.(478-483)CAGCAT>CAT	p.Q160del	TMEM127_uc002svr.2_In_Frame_Del_p.Q160del	NM_017849	NP_060319	O75204	TM127_HUMAN	transmembrane protein 127	160					negative regulation of cell proliferation|negative regulation of TOR signaling cascade	cytoplasm|integral to membrane|plasma membrane					0						GTACTTCTTATGCTGCTGCTGCT	0.557									Pheochromocytoma_(Adrenal)_Familial				8	363	---	---	---	---					
REV1	51455	broad.mit.edu	37	2	100055102	100055102	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:100055102delT	uc002tad.2	-	6	1386	c.1174delA	c.(1174-1176)ATGfs	p.M392fs	REV1_uc002tac.2_Frame_Shift_Del_p.M392fs|REV1_uc002tae.1_Frame_Shift_Del_p.M371fs	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	392					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						CCTGTTTTCATTTTTTTTAAC	0.348								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					8	429	---	---	---	---					
SLC20A1	6574	broad.mit.edu	37	2	113416607	113416608	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:113416607_113416608delAG	uc002tib.2	+	7	1430_1431	c.984_985delAG	c.(982-987)CCAGAGfs	p.P328fs	SLC20A1_uc002tic.1_Frame_Shift_Del_p.P140fs	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	328_329	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						AGGAAGCTCCAGAGAGAGAGAG	0.515													9	272	---	---	---	---					
CHRNG	1146	broad.mit.edu	37	2	233404488	233404490	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:233404488_233404490delCTG	uc002vsx.1	+	1	52_54	c.31_33delCTG	c.(31-33)CTGdel	p.L14del	CHRNG_uc010fyd.2_In_Frame_Del_p.L14del|CHRNG_uc010fye.1_In_Frame_Del_p.L14del	NM_005199	NP_005190	P07510	ACHG_HUMAN	cholinergic receptor, nicotinic, gamma	14					muscle contraction	cell junction|postsynaptic membrane	acetylcholine receptor activity				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;6.39e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00079)|LUSC - Lung squamous cell carcinoma(224;0.00757)|Lung(119;0.0086)		GCTGCTCCTCCTGCTGCTGCTGG	0.655													7	618	---	---	---	---					
GAL3ST2	64090	broad.mit.edu	37	2	242738494	242738496	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr2:242738494_242738496delTCC	uc002wcj.1	+	2	175_177	c.44_46delTCC	c.(43-48)ATCCTC>ATC	p.L20del		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	20	Helical; Signal-anchor for type II membrane protein; (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TTCCGGGTCATCCTCCTCCTCCT	0.631													12	437	---	---	---	---					
GINS1	9837	broad.mit.edu	37	20	25422397	25422397	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr20:25422397delA	uc002wuv.1	+	6	641	c.507delA	c.(505-507)TTAfs	p.L169fs	GINS1_uc010zte.1_RNA	NM_021067	NP_066545	Q14691	PSF1_HUMAN	GINS complex subunit 1	169					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	cytoplasm|nucleoplasm				ovary(1)|central_nervous_system(1)	2						CAGTCCTATTAAAAAAAAATA	0.299													16	307	---	---	---	---					
YTHDF1	54915	broad.mit.edu	37	20	61833650	61833652	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr20:61833650_61833652delCCT	uc002yeh.2	-	4	1934_1936	c.1640_1642delAGG	c.(1639-1644)GAGGTG>GTG	p.E547del	YTHDF1_uc011aaq.1_In_Frame_Del_p.E497del	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	547										ovary(2)	2						TTGCGCACCACCTCCTCCTCCTC	0.557													13	458	---	---	---	---					
TCP10L	140290	broad.mit.edu	37	21	33949091	33949091	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr21:33949091delC	uc002ypw.3	-	5	757	c.641delG	c.(640-642)GGTfs	p.G214fs		NM_144659	NP_653260	Q9NV44	CU077_HUMAN	T-complex 10A-2	Error:Variant_position_missing_in_Q9NV44_after_alignment											0						TCTTCAGACACCCCCCCGTCT	0.478													8	407	---	---	---	---					
PWP2	5822	broad.mit.edu	37	21	45535692	45535694	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr21:45535692_45535694delGAG	uc002zeb.2	+	7	817_819	c.727_729delGAG	c.(727-729)GAGdel	p.E247del		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	247	Poly-Glu.					cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		ggaggaggaagaggaggaggagg	0.527													7	150	---	---	---	---					
RANGAP1	5905	broad.mit.edu	37	22	41650469	41650471	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr22:41650469_41650471delTCC	uc003azs.2	-	10	2571_2573	c.1101_1103delGGA	c.(1099-1104)GAGGAA>GAA	p.367_368EE>E	RANGAP1_uc003azt.2_In_Frame_Del_p.367_368EE>E|RANGAP1_uc003azu.2_In_Frame_Del_p.367_368EE>E|RANGAP1_uc003azr.2_5'Flank|RANGAP1_uc010gyk.2_5'Flank|RANGAP1_uc011aoz.1_In_Frame_Del_p.312_313EE>E	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	367_368	Asp/Glu-rich (highly acidic).|Asp/Glu-rich (highly acidic).				mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						ctcttctccttcctcctcctcct	0.266													22	344	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42605990	42605992	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr22:42605990_42605992delCTG	uc003bcj.1	-	1	5454_5456	c.5320_5322delCAG	c.(5320-5322)CAGdel	p.Q1774del	TCF20_uc003bck.1_In_Frame_Del_p.Q1774del|TCF20_uc003bnt.2_In_Frame_Del_p.Q1774del	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1774					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						TCTGCTCCTTCTGCTGCTGCTGC	0.601													9	311	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610573	42610575	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr22:42610573_42610575delAGG	uc003bcj.1	-	1	871_873	c.737_739delCCT	c.(736-741)TCCTTC>TTC	p.S246del	TCF20_uc003bck.1_In_Frame_Del_p.S246del|TCF20_uc003bnt.2_In_Frame_Del_p.S246del	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	246	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GGTGAAGGGAaggaggaggagga	0.438													18	315	---	---	---	---					
MLC1	23209	broad.mit.edu	37	22	50506871	50506872	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr22:50506871_50506872insG	uc003bjg.1	-	10	1157_1158	c.884_885insC	c.(883-885)CCAfs	p.P295fs	MLC1_uc011arl.1_Frame_Shift_Ins_p.P243fs|MLC1_uc003bjh.1_Frame_Shift_Ins_p.P295fs|MLC1_uc011arm.1_Frame_Shift_Ins_p.P265fs|MLC1_uc011arn.1_Frame_Shift_Ins_p.P216fs|MLC1_uc011aro.1_Frame_Shift_Ins_p.P261fs	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	295						basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		CTTTTATGGCTGGCGGGTAATC	0.525													8	343	---	---	---	---					
SGOL1	151648	broad.mit.edu	37	3	20216050	20216050	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:20216050delT	uc003cbs.2	-	6	1160	c.973delA	c.(973-975)ATGfs	p.M325fs	SGOL1_uc003cbr.2_Intron|SGOL1_uc010hfa.2_Intron|SGOL1_uc003cbt.2_Intron|SGOL1_uc003cbu.2_Frame_Shift_Del_p.M325fs|SGOL1_uc003cbv.2_Intron|SGOL1_uc003cbw.2_Intron|SGOL1_uc003cbx.2_Intron|SGOL1_uc003cby.2_Intron|SGOL1_uc003cbz.2_Frame_Shift_Del_p.M325fs|SGOL1_uc003cca.2_Frame_Shift_Del_p.M325fs|SGOL1_uc003ccb.2_Intron|SGOL1_uc003ccc.2_Intron	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	325					attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						GATTTGTGCATTTTTTTTTGG	0.214													9	155	---	---	---	---					
NKTR	4820	broad.mit.edu	37	3	42679035	42679036	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:42679035_42679036insC	uc003clo.2	+	13	1986_1987	c.1839_1840insC	c.(1837-1842)AGTCCCfs	p.S613fs	NKTR_uc003clm.1_Frame_Shift_Ins_p.S360fs|NKTR_uc003clp.2_Frame_Shift_Ins_p.S360fs|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Frame_Shift_Ins_p.S503fs|NKTR_uc003clr.1_Frame_Shift_Ins_p.S360fs|NKTR_uc003cls.2_Frame_Shift_Ins_p.S313fs	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	613_614					protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		TGAGTGACAGTCCCCCCCCTTC	0.421													15	695	---	---	---	---					
PRSS45	377047	broad.mit.edu	37	3	46784000	46784000	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:46784000delT	uc010hjl.2	-	4	527	c.527delA	c.(526-528)AAGfs	p.K176fs	PRSS45_uc011bam.1_RNA	NM_199183	NP_954652	Q7RTY3	PRS45_HUMAN	testis serine protease 5	208	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0						CACGCAGGCCTTTTCCCAGGA	0.527													7	502	---	---	---	---					
QRICH1	54870	broad.mit.edu	37	3	49094314	49094316	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:49094314_49094316delTGC	uc010hkq.2	-	4	1613_1615	c.1317_1319delGCA	c.(1315-1320)CAGCAA>CAA	p.439_440QQ>Q	QRICH1_uc003cvu.2_In_Frame_Del_p.439_440QQ>Q|QRICH1_uc003cvv.2_In_Frame_Del_p.439_440QQ>Q	NM_198880	NP_942581	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	439_440	Gln-rich.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		AACTTGGAgttgctgctgctgct	0.360													10	240	---	---	---	---					
ERC2	26059	broad.mit.edu	37	3	55733470	55733472	+	In_Frame_Del	DEL	TGG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:55733470_55733472delTGG	uc003dhr.1	-	16	3037_3039	c.2781_2783delCCA	c.(2779-2784)CACCAT>CAT	p.927_928HH>H	ERC2_uc003dhq.1_RNA	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	927_928	Poly-His.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		gtggtggtgatggtggtggtggt	0.389													23	1046	---	---	---	---					
FOXP1	27086	broad.mit.edu	37	3	71247357	71247359	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:71247357_71247359delTGC	uc003dol.2	-	2	497_499	c.174_176delGCA	c.(172-177)CAGCAA>CAA	p.58_59QQ>Q	FOXP1_uc003dom.2_In_Frame_Del_p.58_59QQ>Q|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_In_Frame_Del_p.58_59QQ>Q|FOXP1_uc003dop.2_In_Frame_Del_p.58_59QQ>Q|FOXP1_uc003doq.1_In_Frame_Del_p.58_59QQ>Q|FOXP1_uc003dos.2_In_Frame_Del_p.58_59QQ>Q	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	58_59	Gln-rich.	Breakpoint for translocation to form PAX5-FOXP1.			cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		CAGTACCTGTTGCTGCTGCTGCT	0.586			T	PAX5	ALL								8	352	---	---	---	---					
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:100148586_100148588delGAT	uc003dtx.3	+	2	1293_1295	c.13_15delGAT	c.(13-15)GATdel	p.D10del	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	10	Poly-Asp.										0						GGAGCACAAAGATGATGATGATG	0.507													10	867	---	---	---	---					
DHX36	170506	broad.mit.edu	37	3	154032977	154032978	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:154032977_154032978insT	uc003ezy.3	-	3	541_542	c.460_461insA	c.(460-462)ATGfs	p.M154fs	DHX36_uc010hvq.2_Frame_Shift_Ins_p.M154fs|DHX36_uc003ezz.3_Frame_Shift_Ins_p.M154fs	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	154	Potential.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			GATTCTAAACATTTTTTTTTCT	0.337													8	181	---	---	---	---					
FETUB	26998	broad.mit.edu	37	3	186362544	186362544	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr3:186362544delA	uc010hyq.2	+	5	690	c.429delA	c.(427-429)TCAfs	p.S143fs	FETUB_uc011brz.1_5'UTR|FETUB_uc003fqn.2_Frame_Shift_Del_p.S143fs|FETUB_uc003fqo.2_Frame_Shift_Del_p.S38fs|FETUB_uc010hyr.2_Frame_Shift_Del_p.S106fs|FETUB_uc010hys.2_5'UTR|FETUB_uc003fqp.3_Frame_Shift_Del_p.S78fs	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	143						extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		CAACAGTTTCAAAAAAAAAGA	0.418													12	352	---	---	---	---					
TMEM175	84286	broad.mit.edu	37	4	946206	946207	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:946206_946207delTG	uc003gbq.2	+	7	528_529	c.430_431delTG	c.(430-432)TGTfs	p.C144fs	TMEM175_uc010ibl.1_Frame_Shift_Del_p.C144fs|TMEM175_uc003gbp.1_Frame_Shift_Del_p.C62fs|TMEM175_uc003gbr.2_Frame_Shift_Del_p.C62fs|TMEM175_uc003gbu.2_Frame_Shift_Del_p.C62fs|TMEM175_uc003gbs.2_Frame_Shift_Del_p.C27fs|TMEM175_uc003gbt.2_Frame_Shift_Del_p.C27fs|TMEM175_uc003gbv.2_Frame_Shift_Del_p.C27fs|TMEM175_uc010ibm.2_Frame_Shift_Del_p.C15fs	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	144	Helical; (Potential).					integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			CTTCTTGTTCTGTGTGTGTGTG	0.406													8	691	---	---	---	---					
LYAR	55646	broad.mit.edu	37	4	4276167	4276169	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:4276167_4276169delCTT	uc011bvy.1	-	7	900_902	c.757_759delAAG	c.(757-759)AAGdel	p.K253del	LYAR_uc011bvx.1_In_Frame_Del_p.K136del|LYAR_uc003ght.2_In_Frame_Del_p.K253del	NM_001145725	NP_001139197	Q9NX58	LYAR_HUMAN	Ly1 antibody reactive homolog	253	Lys-rich.					nucleolus	metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CCTTGCGCTGCTTCTTCTTCTTG	0.601													7	965	---	---	---	---					
CLOCK	9575	broad.mit.edu	37	4	56304530	56304532	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:56304530_56304532delCTG	uc003haz.1	-	23	3204_3206	c.2278_2280delCAG	c.(2278-2280)CAGdel	p.Q760del	CLOCK_uc003hba.1_In_Frame_Del_p.Q760del|CLOCK_uc010igu.1_RNA	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	760	Gln-rich.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			cctgggagctctgctgctgctgc	0.315													7	152	---	---	---	---					
CSN2	1447	broad.mit.edu	37	4	70823289	70823289	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:70823289delA	uc003hes.3	-	5	391	c.378delT	c.(376-378)TTTfs	p.F126fs	CSN2_uc003het.3_Frame_Shift_Del_p.F125fs	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	126					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						TTTGAGGGTCAAAAAAGGGTA	0.473													7	291	---	---	---	---					
HERC5	51191	broad.mit.edu	37	4	89381265	89381266	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:89381265_89381266insA	uc003hrt.2	+	3	562_563	c.409_410insA	c.(409-411)GAAfs	p.E137fs		NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	137	RCC1 1.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		CATTTTACAAGAAAAAAAAATA	0.272													7	157	---	---	---	---					
NAP1L5	266812	broad.mit.edu	37	4	89618431	89618433	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:89618431_89618433delCCT	uc003hrx.2	-	1	591_593	c.473_475delAGG	c.(472-477)GAGGCT>GCT	p.E158del	HERC3_uc003hrw.1_Intron|HERC3_uc011cdn.1_Intron|HERC3_uc011cdo.1_Intron	NM_153757	NP_715638	Q96NT1	NP1L5_HUMAN	nucleosome assembly protein 1-like 5	158	Glu-rich.				nucleosome assembly	nucleus	protein binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000181)		TCTGCCGCAGcctcctcctcctc	0.389													7	358	---	---	---	---					
ZNF827	152485	broad.mit.edu	37	4	146823381	146823383	+	In_Frame_Del	DEL	GTG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:146823381_146823383delGTG	uc003ikn.2	-	2	1076_1078	c.1028_1030delCAC	c.(1027-1032)CCACAA>CAA	p.P343del	ZNF827_uc003ikm.2_In_Frame_Del_p.P343del|ZNF827_uc010iox.2_Intron	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	343	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TCCAGGGATTgtggtggtggtgg	0.350													8	163	---	---	---	---					
ANP32C	23520	broad.mit.edu	37	4	165118286	165118288	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:165118286_165118288delTCC	uc011cjk.1	-	1	576_578	c.576_578delGGA	c.(574-579)GAGGAA>GAA	p.192_193EE>E	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	192_193	Asp/Glu-rich (highly acidic).										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		ctcttcaccttcctcctcctcct	0.192													7	46	---	---	---	---					
CLCN3	1182	broad.mit.edu	37	4	170613460	170613460	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr4:170613460delA	uc003isi.2	+	7	1434	c.925delA	c.(925-927)AAAfs	p.K309fs	CLCN3_uc003ish.2_Frame_Shift_Del_p.K309fs|CLCN3_uc011cjz.1_Frame_Shift_Del_p.K292fs|CLCN3_uc011cka.1_Frame_Shift_Del_p.K309fs|CLCN3_uc003isj.1_Frame_Shift_Del_p.K282fs	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	309					endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		AAACGAAGCTAAAAAAAGGGA	0.303													9	381	---	---	---	---					
THBS4	7060	broad.mit.edu	37	5	79372774	79372776	+	In_Frame_Del	DEL	TGA	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:79372774_79372776delTGA	uc003kgh.2	+	17	2312_2314	c.1989_1991delTGA	c.(1987-1992)TGTGAT>TGT	p.D668del	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	668	TSP type-3 7.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		GTGACGAGTGTGATGATGATGAT	0.562													9	867	---	---	---	---					
SLC12A2	6558	broad.mit.edu	37	5	127420207	127420209	+	In_Frame_Del	DEL	CGG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:127420207_127420209delCGG	uc003kus.2	+	1	725_727	c.561_563delCGG	c.(559-564)TCCGGC>TCC	p.G192del	FLJ33630_uc003kun.2_5'Flank|FLJ33630_uc003kuo.2_5'Flank|FLJ33630_uc003kup.1_5'Flank|FLJ33630_uc003kuq.1_5'Flank|FLJ33630_uc003kur.2_5'Flank|SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_In_Frame_Del_p.G192del	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	192	Poly-Gly.|Cytoplasmic (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GCCTGCACTCCGGCGGCGGCGGC	0.650													8	135	---	---	---	---					
TCERG1	10915	broad.mit.edu	37	5	145886723	145886723	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:145886723delA	uc003lob.2	+	19	2903	c.2863delA	c.(2863-2865)AAAfs	p.K955fs	TCERG1_uc003loc.2_Frame_Shift_Del_p.K934fs	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	955					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGCACTTACCAAAAAAAAGAG	0.373													7	386	---	---	---	---					
TIMD4	91937	broad.mit.edu	37	5	156378745	156378747	+	In_Frame_Del	DEL	TTG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr5:156378745_156378747delTTG	uc003lwh.2	-	3	512_514	c.455_457delCAA	c.(454-459)ACAAGC>AGC	p.T152del	TIMD4_uc010jii.2_In_Frame_Del_p.T152del	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	152	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGGTGGGGCTTGTTGTTGTTGT	0.537													15	1218	---	---	---	---					
RIOK1	83732	broad.mit.edu	37	6	7393450	7393452	+	In_Frame_Del	DEL	GAC	-	-	rs2274212	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:7393450_7393452delGAC	uc003mxn.2	+	2	364_366	c.190_192delGAC	c.(190-192)GACdel	p.D69del	RIOK1_uc003mxm.1_Translation_Start_Site	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	69							ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					ggagggttatgacgatgatgatg	0.300													9	317	---	---	---	---					
BTN2A2	10385	broad.mit.edu	37	6	26384091	26384093	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:26384091_26384093delCCT	uc003nhq.2	+	2	128_130	c.42_44delCCT	c.(40-45)TCCCTC>TCC	p.L24del	BTN2A2_uc011dkf.1_In_Frame_Del_p.L24del|BTN2A2_uc011dkg.1_In_Frame_Del_p.L24del|BTN2A2_uc003nhr.2_In_Frame_Del_p.L24del|BTN2A2_uc011dkh.1_In_Frame_Del_p.L24del|BTN2A2_uc003nhs.2_In_Frame_Del_p.L24del|BTN2A2_uc003nht.2_In_Frame_Del_p.L24del	NM_006995	NP_008926	Q8WVV5	BT2A2_HUMAN	butyrophilin, subfamily 2, member A2 isoform a	24					negative regulation of activated T cell proliferation|negative regulation of cellular metabolic process|negative regulation of cytokine secretion	integral to membrane					0						TGCCAGCCTCcctcctcctcctc	0.483													10	382	---	---	---	---					
BTN2A3	54718	broad.mit.edu	37	6	26422388	26422390	+	In_Frame_Del	DEL	CCT	-	-	rs113134648		TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:26422388_26422390delCCT	uc011dkl.1	+	1	72_74	c.42_44delCCT	c.(40-45)TCCCTC>TCC	p.L19del	BTN2A3_uc011dkm.1_RNA					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						GGCCAGCCTCCCTCCTCCTCCTC	0.586													25	593	---	---	---	---					
TRIM26	7726	broad.mit.edu	37	6	30157254	30157254	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:30157254delT	uc003npr.2	-	7	1054	c.845delA	c.(844-846)AAGfs	p.K282fs	TRIM26_uc003nps.2_Frame_Shift_Del_p.K282fs|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Frame_Shift_Del_p.K282fs	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	282							DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TTCTCCGGTCTTTTTTTTAAC	0.483													7	429	---	---	---	---					
STK19	8859	broad.mit.edu	37	6	31939825	31939826	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:31939825_31939826insG	uc003nyv.2	+	1	180_181	c.52_53insG	c.(52-54)CGGfs	p.R18fs	DOM3Z_uc003nyo.1_5'UTR|DOM3Z_uc003nyp.1_5'UTR|DOM3Z_uc003nyq.1_5'UTR|DOM3Z_uc003nyr.1_5'UTR|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'UTR|STK19_uc003nyt.2_5'UTR|DOM3Z_uc003nyu.1_5'UTR|STK19_uc011dow.1_Frame_Shift_Ins_p.R18fs|STK19_uc011dox.1_5'UTR|STK19_uc003nyw.2_Frame_Shift_Ins_p.R18fs|STK19_uc010jtn.1_5'Flank	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	18						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						GCGACAGTGGCGGGCAAACCCC	0.634													25	551	---	---	---	---					
MDFI	4188	broad.mit.edu	37	6	41621169	41621171	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:41621169_41621171delCTG	uc003oqp.3	+	6	926_928	c.597_599delCTG	c.(595-600)CTCTGC>CTC	p.C204del	MDFI_uc003oqq.3_In_Frame_Del_p.C204del|MDFI_uc010jxn.2_In_Frame_Del_p.C204del	NM_005586	NP_005577	Q99750	MDFI_HUMAN	MyoD family inhibitor	204	Cys-rich.				cytoplasmic sequestering of transcription factor|dorsal/ventral axis specification|negative regulation of DNA binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of Wnt receptor signaling pathway	cytoplasm|nucleus					0	Ovarian(28;0.0327)|Colorectal(47;0.121)		Colorectal(64;0.0123)|COAD - Colon adenocarcinoma(64;0.0264)|KIRC - Kidney renal clear cell carcinoma(1;0.138)			ACTCGTGCCTCTGCTGCTGCTGC	0.655													15	401	---	---	---	---					
C6orf165	154313	broad.mit.edu	37	6	88144700	88144700	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:88144700delA	uc003plv.2	+	11	1515	c.1423delA	c.(1423-1425)AAAfs	p.K475fs	SLC35A1_uc003plx.2_5'Flank|C6orf165_uc003plw.2_Frame_Shift_Del_p.K287fs|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Frame_Shift_Del_p.K475fs	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	475										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGAAAAGGCCAAAAAAAATAC	0.269													11	311	---	---	---	---					
GRIK2	2898	broad.mit.edu	37	6	102503432	102503432	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:102503432delA	uc003pqp.3	+	15	2788	c.2539delA	c.(2539-2541)AAAfs	p.K847fs	GRIK2_uc003pqo.3_Frame_Shift_Del_p.K847fs|GRIK2_uc010kcw.2_Frame_Shift_Del_p.K847fs	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	847	Cytoplasmic (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	ATACAAATCCAAAAAAAACGC	0.348													7	405	---	---	---	---					
ARHGAP18	93663	broad.mit.edu	37	6	129959602	129959603	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:129959602_129959603insT	uc003qbr.2	-	3	577_578	c.488_489insA	c.(487-489)AACfs	p.N163fs	ARHGAP18_uc011ebw.1_Frame_Shift_Ins_p.N163fs	NM_033515	NP_277050	Q8N392	RHG18_HUMAN	Rho GTPase activating protein 18	163					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			ovary(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(136;0.0621)|GBM - Glioblastoma multiforme(226;0.0638)|all cancers(137;0.074)		GGTACTGTTTGTTTTTTTTCCT	0.421													8	734	---	---	---	---					
MTHFD1L	25902	broad.mit.edu	37	6	151358163	151358164	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr6:151358163_151358164insA	uc003qob.2	+	26	3025_3026	c.2757_2758insA	c.(2755-2760)GACAAAfs	p.D919fs	MTHFD1L_uc011een.1_RNA|MTHFD1L_uc011eeo.1_Frame_Shift_Ins_p.D920fs|MTHFD1L_uc003qoc.2_Frame_Shift_Ins_p.D867fs	NM_015440	NP_056255	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+	919_920	Formyltetrahydrofolate synthetase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity			ovary(3)|large_intestine(1)	4		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		ACCAACCTGACAAAAAAGGTGT	0.480													12	332	---	---	---	---					
POU6F2	11281	broad.mit.edu	37	7	39379288	39379290	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:39379288_39379290delCAG	uc003thb.1	+	5	601_603	c.559_561delCAG	c.(559-561)CAGdel	p.Q196del	POU6F2_uc010kxo.2_In_Frame_Del_p.Q188del	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	196	Gln-rich.			Q -> QQ (in Ref. 1; AAB49727/AAB49728).	central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						gctccagctccagcagcagcagc	0.365													8	81	---	---	---	---					
DTX2	113878	broad.mit.edu	37	7	76112249	76112249	+	Frame_Shift_Del	DEL	A	-	-	rs147779783	byFrequency	TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:76112249delA	uc003uff.3	+	5	1249	c.693delA	c.(691-693)CCAfs	p.P231fs	DTX2_uc011kgk.1_Frame_Shift_Del_p.P140fs|DTX2_uc003ufg.3_Frame_Shift_Del_p.P231fs|DTX2_uc003ufh.3_Frame_Shift_Del_p.P231fs|DTX2_uc003ufj.3_Frame_Shift_Del_p.P231fs	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	231					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						AGCACCCCCCACACAGGACCG	0.657													7	1120	---	---	---	---					
TMEM60	85025	broad.mit.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:77423460delT	uc003ugn.2	-	2	458	c.231delA	c.(229-231)AAAfs	p.K77fs		NM_032936	NP_116325	Q9H2L4	TMM60_HUMAN	transmembrane protein 60	77						integral to membrane					0						GGTACCAGGCTTTTTTTTTAA	0.408													8	374	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100284335	100284337	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:100284335_100284337delCCT	uc003uwg.1	-	7	1638_1640	c.629_631delAGG	c.(628-633)GAGGGC>GGC	p.E210del		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	210	Poly-Glu.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTCCAGCTGCcctcctcctcctc	0.616													7	142	---	---	---	---					
CDK5	1020	broad.mit.edu	37	7	150754217	150754217	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr7:150754217delT	uc003wir.1	-	2	129	c.68delA	c.(67-69)AACfs	p.N23fs	CDK5_uc003wis.1_Frame_Shift_Del_p.N23fs|SLC4A2_uc003wit.3_5'Flank	NM_004935	NP_004926	Q00535	CDK5_HUMAN	cyclin-dependent kinase 5 isoform 1	23	Protein kinase.				activation of pro-apoptotic gene products|blood coagulation|cell division|cell proliferation|embryo development|negative regulation of transcription, DNA-dependent|positive regulation of neuron apoptosis	axon|cytosol|dendrite|growth cone|lamellipodium|membrane|neuromuscular junction|neuronal cell body	acetylcholine receptor activator activity|ATP binding|cyclin-dependent protein kinase activity|ErbB-2 class receptor binding|ErbB-3 class receptor binding|tau-protein kinase activity			lung(1)|central_nervous_system(1)	2		Breast(660;0.159)|Ovarian(593;0.182)	OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.008)|Lung(243;0.00942)|BRCA - Breast invasive adenocarcinoma(188;0.242)		AGTCTCCCGGTTTTTGGCCTT	0.582													8	794	---	---	---	---					
C8orf80	389643	broad.mit.edu	37	8	27888776	27888776	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr8:27888776delT	uc003xgm.3	-	15	2035	c.1892delA	c.(1891-1893)AATfs	p.N631fs		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	631						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GATCAGGAAATTTTTTTTGCA	0.453													11	676	---	---	---	---					
WRN	7486	broad.mit.edu	37	8	30945377	30945379	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr8:30945377_30945379delAAG	uc003xio.3	+	12	2305_2307	c.1517_1519delAAG	c.(1516-1521)AAAGAA>AAA	p.E510del	WRN_uc011lbe.1_In_Frame_Del_p.E38del|WRN_uc010lvk.2_5'UTR	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	510	Poly-Glu.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		CTTCCTACTAaagaagaagaaga	0.266			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				7	278	---	---	---	---					
WDR67	93594	broad.mit.edu	37	8	124140520	124140521	+	Splice_Site	INS	-	T	T			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr8:124140520_124140521insT	uc003ypp.1	+	14	1975	c.1885_splice	c.e14-1	p.F629_splice	WDR67_uc011lig.1_Splice_Site_p.F629_splice|WDR67_uc011lih.1_Splice_Site_p.F519_splice|WDR67_uc003ypq.1_Splice_Site|WDR67_uc003yps.1_Intron|WDR67_uc003ypt.1_Splice_Site_p.F86_splice|WDR67_uc003ypu.1_Splice_Site_p.F86_splice	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1							centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			TTTTCTTACAGTTTTTTTTTCA	0.322													10	219	---	---	---	---					
COL22A1	169044	broad.mit.edu	37	8	139809072	139809072	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr8:139809072delT	uc003yvd.2	-	12	2033	c.1586delA	c.(1585-1587)AAGfs	p.K529fs		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	529	Pro-rich.|Gly-rich.|Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CTTTTCACCCTTTTCCCCTTG	0.463										HNSCC(7;0.00092)			9	991	---	---	---	---					
KANK1	23189	broad.mit.edu	37	9	732475	732477	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr9:732475_732477delGAG	uc003zgl.1	+	10	3752_3754	c.3103_3105delGAG	c.(3103-3105)GAGdel	p.E1039del	KANK1_uc003zgm.2_3'UTR|KANK1_uc003zgn.1_In_Frame_Del_p.E1039del|KANK1_uc003zgs.1_In_Frame_Del_p.E881del|KANK1_uc010mgx.1_5'UTR|KANK1_uc010mgy.1_5'UTR|KANK1_uc003zgt.1_5'Flank	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	1039					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		TCTTGAAGAAGAGGAGGAGGAGG	0.463													12	477	---	---	---	---					
RUSC2	9853	broad.mit.edu	37	9	35560102	35560104	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr9:35560102_35560104delGCT	uc003zww.2	+	10	3720_3722	c.3465_3467delGCT	c.(3463-3468)GAGCTG>GAG	p.L1160del	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_In_Frame_Del_p.L1160del	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	1160	RUN.					cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			TCTTTGAAGAGCTGCTGCTGCTG	0.616													7	565	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68413605	68413606	+	RNA	DEL	CT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr9:68413605_68413606delCT	uc004aex.2	+	1		c.160_161delCT								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		TTTGCTGAAACTCTGGGGTTGA	0.609													8	33	---	---	---	---					
NOTCH1	4851	broad.mit.edu	37	9	139390945	139390947	+	In_Frame_Del	DEL	GTG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chr9:139390945_139390947delGTG	uc004chz.2	-	34	7244_7246	c.7244_7246delCAC	c.(7243-7248)CCACAG>CAG	p.P2415del		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2415	Cytoplasmic (Potential).|Poly-Pro.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity	p.Q2417*(1)		haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		AGGTGCGGCTGTGGTGGTGGTGG	0.650			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			7	140	---	---	---	---					
TXLNG	55787	broad.mit.edu	37	X	16850849	16850850	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:16850849_16850850delAG	uc004cxq.1	+	6	1019_1020	c.968_969delAG	c.(967-969)CAGfs	p.Q323fs	TXLNG_uc010ney.1_Frame_Shift_Del_p.Q191fs|TXLNG_uc004cxr.1_5'Flank	NM_018360	NP_060830	Q9NUQ3	TXLNG_HUMAN	gamma-taxilin	323	Potential.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane				lung(1)	1						GAAAAACATCAGAGAGAGAGAG	0.386													8	270	---	---	---	---					
CNKSR2	22866	broad.mit.edu	37	X	21627678	21627680	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:21627678_21627680delGAG	uc004czx.1	+	20	2671_2673	c.2635_2637delGAG	c.(2635-2637)GAGdel	p.E886del	CNKSR2_uc004czw.2_In_Frame_Del_p.E886del|CNKSR2_uc011mjn.1_In_Frame_Del_p.E837del|CNKSR2_uc011mjo.1_In_Frame_Del_p.E856del|CNKSR2_uc004czy.2_In_Frame_Del_p.E478del	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	886	Potential.|Poly-Glu.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						ggtggaggaagaggaggaggagg	0.379													14	192	---	---	---	---					
PRRG1	5638	broad.mit.edu	37	X	37312611	37312611	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:37312611delC	uc004ddn.2	+	5	647	c.394delC	c.(394-396)CCCfs	p.P132fs	PRRG1_uc004ddo.2_Frame_Shift_Del_p.P132fs	NM_000950	NP_000941	O14668	TMG1_HUMAN	proline rich Gla (G-carboxyglutamic acid) 1	132	Cytoplasmic (Potential).|Poly-Pro.					extracellular region|integral to plasma membrane	calcium ion binding			ovary(1)|breast(1)	2						TATCACCCCACCCCCCCCACC	0.488													16	760	---	---	---	---					
NAP1L3	4675	broad.mit.edu	37	X	92928035	92928036	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:92928035_92928036insC	uc004efq.2	-	1	573_574	c.268_269insG	c.(268-270)GCCfs	p.A90fs	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	90					nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						TCCCAACGGGGCCCGCCGCGCC	0.386													7	146	---	---	---	---					
HTATSF1	27336	broad.mit.edu	37	X	135585048	135585050	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:135585048_135585050delAAG	uc004ezw.2	+	6	1104_1106	c.682_684delAAG	c.(682-684)AAGdel	p.K232del	HTATSF1_uc004ezx.2_In_Frame_Del_p.K232del	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	232	Poly-Lys.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGATGCCTCAAAGAAGAAGAAGA	0.335													9	493	---	---	---	---					
MAGEC1	9947	broad.mit.edu	37	X	140994844	140994846	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:140994844_140994846delCCT	uc004fbt.2	+	4	1940_1942	c.1654_1656delCCT	c.(1654-1656)CCTdel	p.P553del	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	553							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCAGAGCCCTCCTCAGGGGG	0.567										HNSCC(15;0.026)			10	1642	---	---	---	---					
MAGEA10	4109	broad.mit.edu	37	X	151303906	151303908	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7891-01A-11D-2201-08	TCGA-IB-7891-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	232bda70-597f-4d12-b538-ae907bda8ba5	cceed9ba-fa58-465a-913a-928876675c22	g.chrX:151303906_151303908delAGG	uc004ffk.2	-	5	593_595	c.185_187delCCT	c.(184-189)TCCTGC>TGC	p.S62del	MAGEA10_uc004ffl.2_In_Frame_Del_p.S62del	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	62	Poly-Ser.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGGATAGCaggaggaggagga	0.419													17	372	---	---	---	---					
