Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	979523	979523	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:979523G>A	uc001ack.1	+	11	2084	c.2034G>A	c.(2032-2034)GAG>GAA	p.E678E		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	678					axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GCTCTGGGGAGGACGGTGACT	0.657													4	410					0	0	0.001168	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	G	G	rs10796418	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:16946407T>G	uc010ocf.1	-	3		c.491A>C			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCAATCTCCTCACTCAGCTG	0.672													9	121					0	0	0.000673	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	A	A	rs28392876	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:16946438G>A	uc010ocf.1	-	3		c.460C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCCTTCCGCCGGGCCAGCAGC	0.672													7	101					0	0	0.003080	0	0
MST1P9	11223	broad.mit.edu	37	1	17085791	17085791	+	Missense_Mutation	SNP	G	A	A	rs2297532	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:17085791G>A	uc010ock.1	-	8	1030	c.1030C>T	c.(1030-1032)CGT>TGT	p.R344C	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TCTGTACAACGCCGGATCTGG	0.692													6	83					0	0	0.000673	0	0
MST1P9	11223	broad.mit.edu	37	1	17086003	17086003	+	Silent	SNP	G	C	C	rs3982176		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:17086003G>C	uc010ock.1	-	7	894	c.894C>G	c.(892-894)GGC>GGG	p.G298G	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCGCCCCCCCGCCCACCTCAC	0.657													4	220					0	0	0.002852	0	0
Unknown	0	broad.mit.edu	37	1	21753563	21753563	+	RNA	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:21753563A>G	uc001bep.1	-	2		c.28T>C								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		GTCCTTTTTAATTCCTGCAAT	0.473													6	388					0	0	0.004482	0	0
ZNF436	80818	broad.mit.edu	37	1	23688901	23688901	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:23688901C>T	uc001bgt.2	-	3	1355	c.974G>A	c.(973-975)CGC>CAC	p.R325H	ZNF436_uc001bgu.2_Missense_Mutation_p.R325H	NM_030634	NP_085137	Q9C0F3	ZN436_HUMAN	zinc finger protein 436	325	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;5.97e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000977)|KIRC - Kidney renal clear cell carcinoma(1967;0.00336)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		GTGGGCTCTGCGATGACGCAC	0.512													5	527					0	0	0.001168	0	0
LIN28A	79727	broad.mit.edu	37	1	26751795	26751795	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:26751795G>A	uc001bmj.2	+	3	344	c.230G>A	c.(229-231)AGT>AAT	p.S77N	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	77	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						CTTCACCAGAGTAAGCTGCAC	0.378													4	322					0	0	0.000602	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26883580	26883580	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:26883580G>A	uc001bmr.1	+	13	1236	c.1073G>A	c.(1072-1074)CGC>CAC	p.R358H	RPS6KA1_uc010ofe.1_Missense_Mutation_p.R266H|RPS6KA1_uc010off.1_Missense_Mutation_p.R342H|RPS6KA1_uc001bms.1_Missense_Mutation_p.R367H|RPS6KA1_uc009vsl.1_Missense_Mutation_p.R201H	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	358	AGC-kinase C-terminal.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		TTCACGTCCCGCACACCCAAG	0.572													4	257					0	0	0.001984	0	0
WDTC1	23038	broad.mit.edu	37	1	27622852	27622852	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:27622852G>A	uc009vst.2	+	10	1444	c.909G>A	c.(907-909)CCG>CCA	p.P303P	WDTC1_uc001bno.2_Silent_p.P303P|WDTC1_uc001bnp.1_RNA|WDTC1_uc001bnq.2_5'UTR	NM_015023	NP_055838	Q8N5D0	WDTC1_HUMAN	WD and tetratricopeptide repeats 1	303	WD 5.						protein binding			ovary(1)|central_nervous_system(1)	2		all_cancers(24;3.12e-19)|all_epithelial(13;4.18e-18)|Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.00257)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0443)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;1.02e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00201)|STAD - Stomach adenocarcinoma(196;0.00321)|READ - Rectum adenocarcinoma(331;0.0476)		AGCAGCGGCCGTACACCTTCC	0.498													5	569					0	0	0.001984	0	0
PTPRU	10076	broad.mit.edu	37	1	29638178	29638178	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:29638178G>A	uc001bru.2	+	22	3119	c.3009G>A	c.(3007-3009)CCG>CCA	p.P1003P	PTPRU_uc001brv.2_Silent_p.P999P|PTPRU_uc001brw.2_Silent_p.P993P|PTPRU_uc009vtq.2_Silent_p.P999P|PTPRU_uc009vtr.2_Silent_p.P990P	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1003	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GGTACTGGCCGGAGGACTCAG	0.617													4	395					0	0	0.000248	0	0
CAP1	10487	broad.mit.edu	37	1	40525825	40525825	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:40525825G>A	uc001cfa.3	+	3	428	c.199G>A	c.(199-201)GGA>AGA	p.G67R	CAP1_uc010ojd.1_RNA|CAP1_uc001cey.3_Missense_Mutation_p.G67R|CAP1_uc001cez.3_Missense_Mutation_p.G67R|CAP1_uc009vvz.2_Missense_Mutation_p.G67R|CAP1_uc010oje.1_Intron	NM_006367	NP_006358	Q01518	CAP1_HUMAN	adenylyl cyclase-associated protein	67					activation of adenylate cyclase activity|axon guidance|establishment or maintenance of cell polarity|platelet activation|platelet degranulation|signal transduction	plasma membrane	actin binding			ovary(1)	1	Lung NSC(20;5.03e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;4.63e-18)|Epithelial(16;1.27e-16)|all cancers(16;2.3e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGAGATTGGGGGAGACGTGCA	0.463													4	213					0	0	0.000248	0	0
MCOLN3	55283	broad.mit.edu	37	1	85506746	85506746	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:85506746C>G	uc001dkp.2	-	3	436	c.343G>C	c.(343-345)GCA>CCA	p.A115P	MCOLN3_uc001dkq.2_Intron|MCOLN3_uc001dkr.2_Missense_Mutation_p.A115P|MCOLN3_uc001dks.3_5'UTR	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	115						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		GTGTACACTGCATATGTGTCA	0.388													4	628					0	0	0.000248	0	0
NBPF9	400818	broad.mit.edu	37	1	144617250	144617250	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:144617250C>T	uc009wig.1	+	5	352	c.276C>T	c.(274-276)CTC>CTT	p.L92L	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Silent_p.L23L|NBPF9_uc001eli.3_Intron|NBPF9_uc010oyf.1_Silent_p.L23L|NBPF9_uc010oyg.1_Intron|NBPF9_uc009wii.1_Intron	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	92	Potential.					cytoplasm					0						CTGAGGAGCTCAGGTGAGGGG	0.537													6	709					0	0	0.006214	0	0
NBPF10	100132406	broad.mit.edu	37	1	145323695	145323695	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:145323695C>T	uc001end.3	+	29	3792	c.3757C>T	c.(3757-3759)CCA>TCA	p.P1253S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oym.1_Intron|NBPF10_uc010oyn.1_Intron|NBPF10_uc010oyo.1_Intron|NBPF10_uc010oyp.1_5'Flank	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	1178											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		CCAAGACCCACCATGCCCCAG	0.453													14	716					0	0	0.004007	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244													10	457					0	0	0.004990	0	0
PIAS3	10401	broad.mit.edu	37	1	145584539	145584539	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:145584539G>A	uc001eoc.1	+	12	1597	c.1506G>A	c.(1504-1506)ACG>ACA	p.T502T	NBPF10_uc001emp.3_Intron|PIAS3_uc001eod.1_Silent_p.T171T	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	502					positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CTATGGGCACGTTGGGTGGGG	0.572													5	726					0	0	0.000602	0	0
SETDB1	9869	broad.mit.edu	37	1	150902504	150902504	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:150902504C>A	uc001evu.2	+	3	512	c.322C>A	c.(322-324)CGG>AGG	p.R108R	SETDB1_uc009wmf.2_Silent_p.R108R|SETDB1_uc001evv.2_Silent_p.R108R|SETDB1_uc001evw.3_Silent_p.R108R|SETDB1_uc009wmg.1_Silent_p.R108R	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	108					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			ACTACAATACCGGGACAGTAG	0.443													5	459					0.000602214	0.000809766	0.000602	1	0
TCHH	7062	broad.mit.edu	37	1	152084627	152084627	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:152084627C>G	uc001ezp.2	-	2	1066	c.1066G>C	c.(1066-1068)GAG>CAG	p.E356Q	TCHH_uc009wne.1_Missense_Mutation_p.E356Q	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	356	1-4.|5 X 13 AA tandem repeats of R-R-E-Q-E-E- E-R-R-E-Q-Q-L.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ctctcctcctcctgctcgcgc	0													4	224					0	0	0.000602	0	0
RPTN	126638	broad.mit.edu	37	1	152127897	152127897	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:152127897C>T	uc001ezs.1	-	3	1743	c.1678G>A	c.(1678-1680)GGT>AGT	p.G560S		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	560	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCTGTCTGACCGTAGTGGGAA	0.502													11	891					0	0	0.002780	0	0
RPTN	126638	broad.mit.edu	37	1	152128013	152128013	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:152128013A>G	uc001ezs.1	-	3	1627	c.1562T>C	c.(1561-1563)TTC>TCC	p.F521S		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	521	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACCATAGTGGAAACTCTGGCC	0.507													7	918					0	0	0.006999	0	0
RPTN	126638	broad.mit.edu	37	1	152128237	152128237	+	Silent	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:152128237G>T	uc001ezs.1	-	3	1403	c.1338C>A	c.(1336-1338)GGC>GGA	p.G446G		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	446	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						GGGAATTCTGGCCTTGTCTGT	0.542													10	918					0.00307968	0.00399505	0.003080	1	0
RPTN	126638	broad.mit.edu	37	1	152128689	152128689	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:152128689C>T	uc001ezs.1	-	3	951	c.886G>A	c.(886-888)GGT>AGT	p.G296S		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	296	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCCGTCTGACCGTAGTGGGAA	0.498													11	891					0	0	0.002445	0	0
DENND4B	9909	broad.mit.edu	37	1	153907309	153907309	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:153907309C>T	uc001fdd.1	-	18	3101	c.2700G>A	c.(2698-2700)CAG>CAA	p.Q900Q	uc001fdc.1_RNA	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	900	Gln-rich.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			gctgctgttgctgctgctgct	0.468													6	252					0	0	0.001984	0	0
ASH1L	55870	broad.mit.edu	37	1	155451356	155451356	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:155451356C>T	uc009wqq.2	-	3	1785	c.1305G>A	c.(1303-1305)CCG>CCA	p.P435P	ASH1L_uc001fkt.2_Silent_p.P435P|ASH1L_uc009wqr.1_Silent_p.P435P	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	435					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AAGCCTTAAGCGGTTCCTGAG	0.418													4	256					0	0	0.000602	0	0
FCRL2	79368	broad.mit.edu	37	1	157738250	157738250	+	Silent	SNP	G	A	A	rs143741436	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:157738250G>A	uc001fre.2	-	5	896	c.837C>T	c.(835-837)AAC>AAT	p.N279N	FCRL2_uc001frd.2_5'Flank|FCRL2_uc010phz.1_Silent_p.N279N|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	279	Ig-like C2-type 3.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCACATGGCCGTTGTCAGCTC	0.488													6	593					0	0	0.004482	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161163934	161163934	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:161163934G>A	uc001fyt.3	-	5	1767	c.1339C>T	c.(1339-1341)CGC>TGC	p.R447C		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	447	Disintegrin.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			TGGCACTGGCGGTCAGCATCA	0.617													4	455					0	0	0.000602	0	0
OLFML2B	25903	broad.mit.edu	37	1	161953644	161953644	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:161953644G>A	uc001gbu.2	-	8	2498	c.2074C>T	c.(2074-2076)CGG>TGG	p.R692W	OLFML2B_uc001gbt.2_Missense_Mutation_p.R175W|OLFML2B_uc010pkq.1_Missense_Mutation_p.R693W	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	692	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			TTGGCATTCCGCTGGTTGTAG	0.542													5	751					0	0	0.000602	0	0
NOS1AP	9722	broad.mit.edu	37	1	162313699	162313699	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:162313699G>A	uc001gbv.2	+	6	915	c.528G>A	c.(526-528)ACG>ACA	p.T176T	NOS1AP_uc010pkr.1_Silent_p.T171T|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Silent_p.T171T	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	176	PID.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			TGCAGCACACGCAGCAGAATG	0.582													5	387					0	0	0.000602	0	0
RGS5	8490	broad.mit.edu	37	1	163131760	163131760	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:163131760C>A	uc001gcn.2	-	3	409	c.162G>T	c.(160-162)TCG>TCT	p.S54S	RGS5_uc009wvb.2_Intron	NM_003617	NP_003608	O15539	RGS5_HUMAN	regulator of G-protein signalling 5	54					negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity				0			LUSC - Lung squamous cell carcinoma(543;0.187)			CCTCGTCCAGCGAGGTTCTAC	0.433													4	273					0.00198382	0.00263316	0.001984	1	0
FAM20B	9917	broad.mit.edu	37	1	179033502	179033502	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:179033502C>A	uc001gmc.2	+	6	1102	c.809C>A	c.(808-810)CCG>CAG	p.P270Q		NM_014864	NP_055679	O75063	XYLK_HUMAN	hypothetical protein LOC9917 precursor	270	Lumenal (Potential).					Golgi membrane|integral to membrane	ATP binding|kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(3)	3						GACTCTGGCCCGCGCCTCTTG	0.498													4	528					0.00307968	0.00399505	0.003080	1	0
ZNF648	127665	broad.mit.edu	37	1	182027131	182027131	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:182027131G>A	uc001goz.2	-	2	223	c.15C>T	c.(13-15)GAC>GAT	p.D5D		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGTCCTGGGAGTCCACTTGTG	0.517													4	238					0	0	0.001984	0	0
PRG4	10216	broad.mit.edu	37	1	186275983	186275983	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:186275983C>A	uc001gru.3	+	7	1183	c.1132C>A	c.(1132-1134)CCC>ACC	p.P378T	PRG4_uc001grt.3_Missense_Mutation_p.P337T|PRG4_uc009wyl.2_Missense_Mutation_p.P285T|PRG4_uc009wym.2_Missense_Mutation_p.P244T|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	378	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|4; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCACCACCCCCAAGGAGCC	0.637													6	428					5.18039e-06	7.30932e-06	0.003080	1	0
CR2	1380	broad.mit.edu	37	1	207639910	207639910	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:207639910G>A	uc001hfw.2	+	2	192	c.98G>A	c.(97-99)CGG>CAG	p.R33Q	CR2_uc001hfv.2_Missense_Mutation_p.R33Q|CR2_uc009xch.2_Missense_Mutation_p.R33Q	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	33	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CTAAATGGCCGGATTAGTTAT	0.413													6	730					0	0	0.001984	0	0
CENPF	1063	broad.mit.edu	37	1	214819645	214819645	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:214819645G>A	uc001hkm.2	+	13	6906	c.6732G>A	c.(6730-6732)GAG>GAA	p.E2244E		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2340	Potential.|2-1.|2 X 177 AA tandem repeats.|Interaction with NDE1 and NDEL1.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AAGAAAAGGAGCAAGCAGAGA	0.368													5	341					0	0	0.000602	0	0
MTR	4548	broad.mit.edu	37	1	237048478	237048478	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:237048478G>A	uc001hyi.3	+	26	3157	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	MTR_uc010pxw.1_Missense_Mutation_p.E505K|MTR_uc010pxx.1_Missense_Mutation_p.E861K|MTR_uc010pxy.1_Missense_Mutation_p.E766K	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	912					nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	AATCATGGAAGAATATGAAGA	0.333													4	304					0	0	0.000673	0	0
RYR2	6262	broad.mit.edu	37	1	237664023	237664023	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:237664023G>A	uc001hyl.1	+	21	2336	c.2216G>A	c.(2215-2217)CGT>CAT	p.R739H		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	739	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGTATTGCTCGTACTGTAAGC	0.393													6	852					0	0	0.004482	0	0
FMN2	56776	broad.mit.edu	37	1	240371091	240371091	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:240371091C>T	uc010pyd.1	+	5	3204	c.2979C>T	c.(2977-2979)CCC>CCT	p.P993P	FMN2_uc010pye.1_Silent_p.P997P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	993	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCACTTCCCGGAGCGGGCA	0.711													5	474					0	0	0.003163	0	0
WDR37	22884	broad.mit.edu	37	10	1149551	1149551	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:1149551G>A	uc001igf.1	+	10	909	c.736G>A	c.(736-738)GAA>AAA	p.E246K	WDR37_uc009xhm.1_Missense_Mutation_p.E247K|WDR37_uc009xhn.1_RNA|WDR37_uc001igg.1_RNA	NM_014023	NP_054742	Q9Y2I8	WDR37_HUMAN	WD repeat domain 37	246											0		all_epithelial(10;0.0449)|Colorectal(49;0.142)		Epithelial(11;0.134)		GATATCTGGGGAAGATGAAGT	0.498													4	153					0	0	0.001168	0	0
C10orf50	645528	broad.mit.edu	37	10	26880266	26880266	+	RNA	SNP	G	A	A	rs138111133	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:26880266G>A	uc001ist.2	+	2		c.501G>A				NR_026793				Homo sapiens, clone IMAGE:5172288, mRNA.												0						ACCAAGCCCAGTGGACAGATG	0.443													6	202					0	0	0.001168	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430948	37430948	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:37430948C>G	uc001iza.1	+	7	1054	c.955C>G	c.(955-957)CCA>GCA	p.P319A		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	375						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATTTACGTGGCCAGCAAAAGG	0.423													6	281					0	0	0.006214	0	0
BMS1	9790	broad.mit.edu	37	10	43318571	43318571	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:43318571G>A	uc001jaj.2	+	20	3496	c.3138G>A	c.(3136-3138)ATG>ATA	p.M1046I		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1046					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						TGTAGGGAATGTTTAATTCTG	0.393													8	480					0	0	0.006214	0	0
ANK3	288	broad.mit.edu	37	10	61828580	61828580	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:61828580T>C	uc001jky.2	-	37	12251	c.12059A>G	c.(12058-12060)AAG>AGG	p.K4020R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4020					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGACTGCATCTTTTTTTCTTC	0.458													4	505					0	0	0.001984	0	0
CDH23	64072	broad.mit.edu	37	10	73464804	73464804	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:73464804G>A	uc001jrx.3	+	24	3247	c.2870G>A	c.(2869-2871)CGC>CAC	p.R957H	CDH23_uc001jry.2_Missense_Mutation_p.R573H|CDH23_uc001jrz.2_Missense_Mutation_p.R573H	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	957	Cadherin 9.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GACCGCGAGCGCATCGCGGAG	0.677													4	174					0	0	0.000248	0	0
ADRA2A	150	broad.mit.edu	37	10	112838175	112838175	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:112838175G>A	uc001kzo.2	+	1	1386	c.421G>A	c.(421-423)GCC>ACC	p.A141T		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	126	Helical; Name=3; (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	GCACCTGTGCGCCATCAGCCT	0.607													3	96					0	0	0.004672	0	0
PNLIP	5406	broad.mit.edu	37	10	118315573	118315573	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:118315573C>T	uc001lcm.2	+	9	916	c.873C>T	c.(871-873)ATC>ATT	p.I291I		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	291					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	CTGATAGCATCGTCAACCCTG	0.433													49	460					0	0	0.003610	0	0
MKI67	4288	broad.mit.edu	37	10	129903722	129903722	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:129903722T>C	uc001lke.2	-	13	6577	c.6382A>G	c.(6382-6384)AGG>GGG	p.R2128G	MKI67_uc001lkf.2_Missense_Mutation_p.R1768G|MKI67_uc009yav.1_Missense_Mutation_p.R1703G|MKI67_uc009yaw.1_Missense_Mutation_p.R1278G	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2128	16 X 122 AA approximate repeats.|10.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				ACTATATCCCTTTTCCCCAAA	0.483													4	850					0	0	0.001168	0	0
LOC653544	653544	broad.mit.edu	37	10	135491113	135491113	+	Missense_Mutation	SNP	G	T	T	rs150899513	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:135491113G>T	uc010qvi.1	+	1	835	c.724G>T	c.(724-726)GCC>TCC	p.A242S		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	242						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGTCGCCTTCGCCCACACCGG	0.776													4	48					4.68919e-08	6.70815e-08	0.000673	1	0
IFITM3	10410	broad.mit.edu	37	11	320713	320713	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:320713G>A	uc001lpa.2	-	1	202	c.101C>T	c.(100-102)GCG>GTG	p.A34V	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	34	Extracellular (Potential).			A -> G (in Ref. 1; CAA40626).	response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		GTTGTGGGGCGCCCCCAGCAC	0.607													6	511					0	0	0.001168	0	0
MUC5B	727897	broad.mit.edu	37	11	1262850	1262850	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:1262850G>A	uc009ycr.1	+	47	6945	c.6819G>A	c.(6817-6819)GAG>GAA	p.E2273E	MUC5B_uc001ltb.2_Silent_p.E1583E	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1580	7 X Cys-rich subdomain repeats.|Cys-rich subdomain 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGAACTGGGAGCAGGAGGGCG	0.627													3	71					0	0	0.004672	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1628947	1628947	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:1628947G>A	uc001ltw.1	-	1	747	c.669C>T	c.(667-669)TCC>TCT	p.S223S		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	223	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		TGGACTGGGAGGAGCAGGGCT	0.323													9	856					0	0	0.002450	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642703	1642703	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:1642703A>G	uc009ycy.1	-	4	846	c.759T>C	c.(757-759)AGT>AGC	p.S253S		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	267	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GATTGCAGCAACTGGACTGGC	0.592													10	808					0	0	0.001882	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642985	1642985	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:1642985G>A	uc009ycy.1	-	3	564	c.477C>T	c.(475-477)TCC>TCT	p.S159S		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	173	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AACCCCCACAGGAGCCACAGC	0.667													4	519					0	0	0.006122	0	0
HBE1	3046	broad.mit.edu	37	11	5290794	5290794	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:5290794G>A	uc001mal.1	-	2	458	c.205C>T	c.(205-207)CTG>TTG	p.L69L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Silent_p.L69L	NM_005330	NP_005321	P02100	HBE_HUMAN	epsilon globin	69					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.34e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGGAAGTCAGCACCTTCTTG	0.517													4	392					0	0	0.000602	0	0
DNHD1	144132	broad.mit.edu	37	11	6530226	6530226	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:6530226G>A	uc001mdw.3	+	5	1601	c.1037G>A	c.(1036-1038)GGT>GAT	p.G346D	DNHD1_uc001mdp.2_Missense_Mutation_p.G346D|DNHD1_uc001mdq.2_Missense_Mutation_p.G35D	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	346					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ATGACACTGGGTACCTGGCAC	0.507													6	732					0	0	0.001984	0	0
AMPD3	272	broad.mit.edu	37	11	10518392	10518392	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:10518392C>T	uc001mio.1	+	10	1799	c.1464C>T	c.(1462-1464)AAC>AAT	p.N488N	AMPD3_uc010rbz.1_Silent_p.N329N|AMPD3_uc001min.1_Silent_p.N497N|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Silent_p.N495N|AMPD3_uc009yfy.2_Silent_p.N488N	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	488					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		TGCTGCCAAACTTTGGGAAGA	0.502													27	341					0	0	0.005443	0	0
RAG1	5896	broad.mit.edu	37	11	36595507	36595507	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:36595507G>A	uc001mwu.3	+	2	777	c.653G>A	c.(652-654)CGT>CAT	p.R218H	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	218	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				AACACTGCCCGTCGGGGACTC	0.527									Familial_Hemophagocytic_Lymphohistiocytosis				5	270					0	0	0.000602	0	0
EXT2	2132	broad.mit.edu	37	11	44130820	44130820	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:44130820G>A	uc001mxz.2	+	3	947	c.613G>A	c.(613-615)GTC>ATC	p.V205I	EXT2_uc010rfo.1_Missense_Mutation_p.V233I|EXT2_uc001mxy.2_Missense_Mutation_p.V218I|EXT2_uc009ykt.2_Missense_Mutation_p.V205I|EXT2_uc001mya.2_Missense_Mutation_p.V238I	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	205	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						AGCCCTGGATGTCCCCAGAGA	0.433			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				4	291					0	0	0.000602	0	0
AGBL2	79841	broad.mit.edu	37	11	47684620	47684620	+	Silent	SNP	T	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:47684620T>A	uc001ngg.2	-	17	2593	c.2493A>T	c.(2491-2493)TCA>TCT	p.S831S	AGBL2_uc001ngf.2_RNA	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	831					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						GGGTGGCCATTGATGGGTCCA	0.353													63	663					0	0	0.003610	0	0
OR4C6	219432	broad.mit.edu	37	11	55433006	55433006	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:55433006G>A	uc001nht.3	+	3	629	c.364G>A	c.(364-366)GTG>ATG	p.V122M	OR4C6_uc010rik.1_Missense_Mutation_p.V122M	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGACCGCTACGTGGCCATCTG	0.547													66	290					0	0	0.003610	0	0
FAM111A	63901	broad.mit.edu	37	11	58919530	58919530	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:58919530G>A	uc010rkp.1	+	5	616	c.389G>A	c.(388-390)GGC>GAC	p.G130D	FAM111A_uc010rkq.1_Missense_Mutation_p.G130D|FAM111A_uc010rkr.1_Missense_Mutation_p.G130D|FAM111A_uc001nno.2_Missense_Mutation_p.G130D|FAM111A_uc001nnp.2_Missense_Mutation_p.G130D|FAM111A_uc001nnq.2_Missense_Mutation_p.G130D	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	130					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				CTTGTGCGTGGCACAGAAGGA	0.433													5	246					0	0	0.001984	0	0
CPSF7	79869	broad.mit.edu	37	11	61187568	61187568	+	Splice_Site	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:61187568T>C	uc001nrq.2	-	5	512	c.378_splice	c.e5-1	p.G126_splice	CPSF7_uc001nro.2_Splice_Site_p.G126_splice|CPSF7_uc001nrp.2_Splice_Site_p.G169_splice|CPSF7_uc001nrr.2_Splice_Site_p.G126_splice|CPSF7_uc001nrs.1_Splice_Site_p.G36_splice	NM_001136040	NP_001129512	Q8N684	CPSF7_HUMAN	pre-mRNA cleavage factor I, 59 kDa subunit						mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	mRNA cleavage factor complex	nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						TCAGCATACCTTAGGAAAGAA	0.378													3	265					0	0	0.001168	0	0
FTH1	2495	broad.mit.edu	37	11	61732866	61732866	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:61732866C>A	uc001nsu.2	-	2	471	c.236G>T	c.(235-237)GGC>GTC	p.G79V		NM_002032	NP_002023	P02794	FRIH_HUMAN	ferritin, heavy polypeptide 1	79	Ferritin-like diiron.				cell proliferation|cellular membrane organization|immune response|intracellular sequestering of iron ion|iron ion transport|negative regulation of cell proliferation|post-Golgi vesicle-mediated transport	cytosol|intracellular ferritin complex	ferric iron binding|ferroxidase activity|protein binding			ovary(1)	1					Iron Dextran(DB00893)	GAAGATTCGGCCACCTCGTTG	0.443													7	688					4.3838e-07	6.21944e-07	0.001855	1	0
AHNAK	79026	broad.mit.edu	37	11	62296070	62296070	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:62296070A>G	uc001ntl.2	-	5	6119	c.5819T>C	c.(5818-5820)GTG>GCG	p.V1940A	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1940					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CGACACATCCACATCCCCTTT	0.502													15	821					0	0	0.002450	0	0
SLC25A45	283130	broad.mit.edu	37	11	65143924	65143924	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:65143924G>A	uc001odp.1	-	6	1243	c.821C>T	c.(820-822)GCT>GTT	p.A274V	SLC25A45_uc009yqi.1_Missense_Mutation_p.A212V|SLC25A45_uc001odq.1_Missense_Mutation_p.A250V|SLC25A45_uc001odr.1_Missense_Mutation_p.A274V|SLC25A45_uc001ods.1_Missense_Mutation_p.A232V|SLC25A45_uc001odt.1_Missense_Mutation_p.A232V	NM_001077241	NP_001070709	Q8N413	S2545_HUMAN	solute carrier family 25, member 45 isoform b	274	Helical; Name=6; (Potential).|Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						GAAGGTGACAGCATTGACGGG	0.627													4	234					0	0	0.000248	0	0
KRTAP5-9	3846	broad.mit.edu	37	11	71259903	71259903	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:71259903G>A	uc001oqs.1	+	1	438	c.200G>A	c.(199-201)GGC>GAC	p.G67D		NM_005553	NP_005544	P26371	KRA59_HUMAN	keratin associated protein 5-9	67	8 X 4 AA repeats of C-C-X-P.				epidermis development	keratin filament					0						TCCTGTGGGGGCTCCAAGGGA	0.627													5	744					0	0	0.001984	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74914427	74914427	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:74914427G>A	uc001owb.2	+	13	2291	c.1904G>A	c.(1903-1905)CGT>CAT	p.R635H	SLCO2B1_uc010rrr.1_Missense_Mutation_p.R491H|SLCO2B1_uc010rrs.1_Missense_Mutation_p.R519H|SLCO2B1_uc001owc.2_Missense_Mutation_p.R408H|SLCO2B1_uc001owd.2_Missense_Mutation_p.R613H	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	635	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	AGCTGTGGGCGTCGAGCTGTC	0.607													5	612					0	0	0.001168	0	0
MOGAT2	80168	broad.mit.edu	37	11	75439975	75439975	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:75439975G>A	uc010rru.1	+	5	791	c.791G>A	c.(790-792)CGT>CAT	p.R264H	MOGAT2_uc001oww.1_3'UTR|MOGAT2_uc010rrv.1_Missense_Mutation_p.R182H	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	264					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					TTTCATGGCCGTGGTGTCTTC	0.542													5	529					0	0	0.001984	0	0
ODZ4	26011	broad.mit.edu	37	11	78437202	78437202	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:78437202G>A	uc001ozl.3	-	23	3935	c.3472C>T	c.(3472-3474)CTG>TTG	p.L1158L		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1158	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TAGCCCTGCAGCACTGTTGTT	0.433													6	827					0	0	0.001984	0	0
FOLH1B	219595	broad.mit.edu	37	11	89395322	89395322	+	Translation_Start_Site	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:89395322C>T	uc001pda.2	+	2	433	c.-93C>T	c.(-95--91)TACGC>TATGC			NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B						proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TTTCAGAATACGCTTATAGGC	0.328													5	157					0	0	0.003080	0	0
CNTN5	53942	broad.mit.edu	37	11	100211266	100211266	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:100211266C>A	uc001pga.2	+	22	3141	c.2802C>A	c.(2800-2802)TTC>TTA	p.F934L	CNTN5_uc001pgb.2_Missense_Mutation_p.F860L|CNTN5_uc010ruk.1_Missense_Mutation_p.F205L	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	934	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ATGAGTCTTTCGTCATCCTAA	0.423													21	81					6.21321e-17	9.09035e-17	0.002780	1	0
DYNC2H1	79659	broad.mit.edu	37	11	103175414	103175414	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:103175414C>A	uc001pho.2	+	77	11491	c.11347C>A	c.(11347-11349)CAT>AAT	p.H3783N	DYNC2H1_uc001phn.1_Missense_Mutation_p.H3790N|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3783	AAA 6 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GAAGAACTTACATCTTGTGGT	0.398													11	278					3.27435e-08	4.69719e-08	0.002450	1	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418													7	404					0	0	0.000673	0	0
LRTM2	654429	broad.mit.edu	37	12	1943483	1943483	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:1943483A>G	uc001qjt.2	+	5	1515	c.709A>G	c.(709-711)AAG>GAG	p.K237E	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.K237E|LRTM2_uc010sdx.1_Missense_Mutation_p.K237E|LRTM2_uc001qjv.2_5'UTR	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	237	LRRCT.|Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GCTGAGGGGGAAGGACATGCG	0.582													3	194					0	0	0.001168	0	0
PRB1	5542	broad.mit.edu	37	12	11506290	11506290	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:11506290G>C	uc001qzw.1	-	4	784	c.747C>G	c.(745-747)AAC>AAG	p.N249K	PRB1_uc001qzu.1_Missense_Mutation_p.N116K|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	310	13.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-5).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTTGAGGTTTGTTGCCTCCTT	0.612													5	553					0	0	0.001984	0	0
PRB1	5542	broad.mit.edu	37	12	11506852	11506852	+	Missense_Mutation	SNP	G	T	T	rs151023240		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:11506852G>T	uc001qzw.1	-	3	222	c.185C>A	c.(184-186)CCA>CAA	p.P62Q	PRB1_uc001qzu.1_Missense_Mutation_p.P62Q|PRB1_uc001qzv.1_Missense_Mutation_p.P62Q	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	123	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|4.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele M).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GCCTCCTTGTGGGGGTGGTCC	0.607													7	771					0.000422831	0.000571544	0.004007	1	0
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:25398284C>T	uc001rgp.1	-	2	216	c.35G>A	c.(34-36)GGT>GAT	p.G12D	KRAS_uc001rgq.1_Missense_Mutation_p.G12D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12N(6)|p.G12G(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GCCTACGCCACCAGCTCCAAC	0.348	G12D(HPAC_PANCREAS)|G12V(SW403_LARGE_INTESTINE)|G12D(HPAFII_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(NCIH441_LUNG)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(PK1_PANCREAS)|G12V(KP3_PANCREAS)|G12D(PANC0813_PANCREAS)|G12A(SW1116_LARGE_INTESTINE)|G12D(LS180_LARGE_INTESTINE)|G12V(NCIH727_LUNG)|G12V(PATU8988S_PANCREAS)|G12V(CAPAN2_PANCREAS)|G12D(KP4_PANCREAS)|G12D(LS513_LARGE_INTESTINE)|G12D(SNUC2A_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(COLO668_LUNG)|G12D(COLO678_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12D(PANC0203_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(SW900_LUNG)|G12V(LCLC97TM1_LUNG)|G12V(SW620_LARGE_INTESTINE)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(SH10TC_STOMACH)|G12V(A498_KIDNEY)|G12D(PK59_PANCREAS)|G12D(HEC1A_ENDOMETRIUM)|G12D(PANC0504_PANCREAS)|G12V(SNGM_ENDOMETRIUM)|G12A(RERFLCAD1_LUNG)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12D(ASPC1_PANCREAS)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(RCM1_LARGE_INTESTINE)|G12V(CORL23_LUNG)|G12D(SW1990_PANCREAS)|G12D(HEYA8_OVARY)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12V(HUPT4_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(HEC50B_ENDOMETRIUM)|G12V(YAPC_PANCREAS)|G12V(NCIH2444_LUNG)|G12V(HCC56_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12V(DANG_PANCREAS)|G12V(SHP77_LUNG)|G12D(AGS_STOMACH)|G12D(SKLU1_LUNG)|G12V(QGP1_PANCREAS)|G12D(L33_PANCREAS)|G12V(PANC0327_PANCREAS)|G12D(PANC1_PANCREAS)|G12V(RKN_OVARY)|G12V(PATU8902_PANCREAS)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			19	73					0	0	0.002780	0	0
DDX11	1663	broad.mit.edu	37	12	31237922	31237922	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:31237922G>C	uc001rjt.1	+	5	751	c.500G>C	c.(499-501)AGA>ACA	p.R167T	DDX11_uc010sjw.1_Missense_Mutation_p.R167T|DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Missense_Mutation_p.R167T|DDX11_uc001rjs.1_Missense_Mutation_p.R167T|DDX11_uc001rju.1_5'UTR|DDX11_uc001rjv.1_Missense_Mutation_p.R167T|DDX11_uc001rjw.1_Missense_Mutation_p.R141T|DDX11_uc001rjx.1_5'Flank	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	167	Glu-rich.|Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GAAGAAGAAAGAGAGAATCTC	0.612										Multiple Myeloma(12;0.14)			8	77					0	0	0.001855	0	0
LRP1	4035	broad.mit.edu	37	12	57573222	57573222	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:57573222G>A	uc001snd.2	+	29	5315	c.4849G>A	c.(4849-4851)GTC>ATC	p.V1617I		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1617	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CATCGACAACGTCACAGTGCT	0.582													4	163					0	0	0.000248	0	0
RPSAP52	204010	broad.mit.edu	37	12	66152018	66152018	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:66152018A>G	uc001sso.2	-	2	926	c.505T>C	c.(505-507)TCT>CCT	p.S169P		NR_026825				SubName: Full=Putative uncharacterized protein RPSAP52;												0						ATAGGCACAGAGGGCACCTGC	0.522													3	86					0	0	0.004672	0	0
TBX5	6910	broad.mit.edu	37	12	114836450	114836450	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:114836450C>T	uc001tvo.2	-	5	933	c.438G>A	c.(436-438)GCG>GCA	p.A146A	TBX5_uc001tvp.2_Silent_p.A146A|TBX5_uc001tvq.2_Silent_p.A96A|TBX5_uc010syv.1_Silent_p.A146A	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	146	T-box.				cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		TCATCCAATGCGCCCCGGTGG	0.612													3	69					0	0	0.000248	0	0
KDM2B	84678	broad.mit.edu	37	12	121951124	121951124	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:121951124G>A	uc001uat.2	-	10	1233	c.1129C>T	c.(1129-1131)CGC>TGC	p.R377C	KDM2B_uc001uas.2_Missense_Mutation_p.R346C|KDM2B_uc001uau.2_Missense_Mutation_p.R260C|KDM2B_uc001uav.3_Missense_Mutation_p.R287C	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	377					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						AGGTGGGAGCGCTGGGTCACA	0.557													4	206					0	0	0.000248	0	0
POLE	5426	broad.mit.edu	37	12	133237686	133237686	+	Missense_Mutation	SNP	C	A	A	rs142563997		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:133237686C>A	uc001uks.1	-	25	2973	c.2929G>T	c.(2929-2931)GGG>TGG	p.G977W	POLE_uc001ukr.1_5'Flank|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.G950W	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	977					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		TGCAGTTCCCCGCGGCGTTTG	0.517								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					4	664					8.12818e-05	0.000111035	0.001984	1	0
LOC284232	284232	broad.mit.edu	37	13	19414201	19414201	+	RNA	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr13:19414201G>C	uc010tcj.1	-	1		c.31909C>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CAACTTCTTTGTTATATTGTT	0.318													4	142					0	0	0.006122	0	0
LOC284232	284232	broad.mit.edu	37	13	19415641	19415641	+	RNA	SNP	A	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr13:19415641A>T	uc010tcj.1	-	1		c.30469T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						aaaaaaaaaaaaacccaaaca	0.169													6	76					0	0	0.003080	0	0
LOC284232	284232	broad.mit.edu	37	13	19415742	19415742	+	RNA	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr13:19415742T>C	uc010tcj.1	-	1		c.30368A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCTGTTTTCCTAATCTTTCTT	0.313													4	214					0	0	0.001168	0	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488													4	132					0	0	0.006214	0	0
TOX4	9878	broad.mit.edu	37	14	21955724	21955724	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:21955724G>A	uc001waz.2	+	3	293	c.190G>A	c.(190-192)GAC>AAC	p.D64N	TOX4_uc001way.2_5'UTR|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Missense_Mutation_p.D41N|TOX4_uc010tlv.1_5'Flank	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	64						chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		TGACCTGGCAGACCCTTCCTC	0.527													6	651					0	0	0.001984	0	0
MMP14	4323	broad.mit.edu	37	14	23314467	23314467	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:23314467C>T	uc001whc.2	+	9	1543	c.1309C>T	c.(1309-1311)CGT>TGT	p.R437C		NM_004995	NP_004986	P50281	MMP14_HUMAN	matrix metalloproteinase 14 preproprotein	437	Hemopexin-like 3.|Extracellular (Potential).					extracellular matrix|integral to plasma membrane|melanosome	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0	all_cancers(95;9.47e-05)			GBM - Glioblastoma multiforme(265;0.00551)		CAGGTACTACCGTTTCAACGA	0.577													3	125					0	0	0.000248	0	0
TMX1	81542	broad.mit.edu	37	14	51716045	51716045	+	Missense_Mutation	SNP	A	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:51716045A>T	uc001wza.3	+	5	570	c.445A>T	c.(445-447)ATG>TTG	p.M149L	TMX1_uc010aoa.2_Missense_Mutation_p.M65L	NM_030755	NP_110382	Q9H3N1	TMX1_HUMAN	thioredoxin domain containing 1 precursor	149	Extracellular (Potential).				anti-apoptosis|cell proliferation|cell redox homeostasis|DNA replication|electron transport chain|ER to Golgi vesicle-mediated transport|leukocyte activation|positive regulation of growth|positive regulation of transcription, DNA-dependent|response to stress|signal transduction	endoplasmic reticulum membrane|integral to membrane|membrane fraction	arsenate reductase (thioredoxin) activity|disulfide oxidoreductase activity				0						TATTTTTAGGATGAGTAGTAT	0.284													24	208					0	0	0.006320	0	0
C14orf39	317761	broad.mit.edu	37	14	60928082	60928082	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:60928082T>C	uc001xez.3	-	13	1217	c.1107A>G	c.(1105-1107)AAA>AAG	p.K369K	C14orf39_uc010apo.2_Silent_p.K80K	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	369										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		CTTTATCCCCTTTTTCCGACC	0.279													3	217					0	0	0.000248	0	0
RGS6	9628	broad.mit.edu	37	14	72976937	72976937	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:72976937G>A	uc001xna.3	+	14	1564	c.1041G>A	c.(1039-1041)CGG>CGA	p.R347R	RGS6_uc010ttn.1_Silent_p.R347R|RGS6_uc001xmx.3_Silent_p.R347R|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.R347R|RGS6_uc010ttp.1_Silent_p.R278R|RGS6_uc001xmz.1_Silent_p.R208R	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	347	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		AGGTGGGGCGGGACCAGTTTC	0.463													4	607					0	0	0.000602	0	0
CCDC88C	440193	broad.mit.edu	37	14	91749704	91749704	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:91749704G>A	uc010aty.2	-	26	4698	c.4599C>T	c.(4597-4599)ACC>ACT	p.T1533T	CCDC88C_uc001xzj.2_Silent_p.T57T|CCDC88C_uc001xzi.2_5'UTR	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1533					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GGGCGATGGGGGTGGAGTTGG	0.647													3	117					0	0	0.000602	0	0
EVL	51466	broad.mit.edu	37	14	100563924	100563924	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:100563924G>A	uc001ygt.2	+	3	520	c.281G>A	c.(280-282)AGT>AAT	p.S94N	EVL_uc001ygv.2_Missense_Mutation_p.S100N|EVL_uc001ygu.2_Missense_Mutation_p.S96N|EVL_uc010avu.2_5'UTR	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	94	WH1.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				AACTTTGCAAGTAAAGAAGAG	0.488													4	278					0	0	0.001984	0	0
NUDT14	256281	broad.mit.edu	37	14	105639421	105639421	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:105639421G>A	uc010tyn.1	-	5	720	c.606C>T	c.(604-606)CTC>CTT	p.L202L	NUDT14_uc001yqi.2_RNA	NM_177533	NP_803877	O95848	NUD14_HUMAN	nudix-type motif 14	202	Nudix hydrolase.					cytoplasm	metal ion binding|protein binding|UDP-sugar diphosphatase activity			skin(1)	1		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		AGATGACGCCGAGGGTCTTGG	0.632										HNSCC(42;0.11)			27	188					0	0	0.002096	0	0
Unknown	0	broad.mit.edu	37	15	75594836	75594836	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:75594836A>G	uc002azx.1	-	1	471	c.221T>C	c.(220-222)ATC>ACC	p.I74T						SubName: Full=Putative uncharacterized protein DNM1P33;																		GAGGTGCATGATGGTCTTGGG	0.592													3	96					0	0	0.001855	0	0
SNX33	257364	broad.mit.edu	37	15	75949351	75949351	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:75949351G>A	uc002bau.2	+	2	1616	c.1520G>A	c.(1519-1521)CGC>CAC	p.R507H	SNX33_uc002bav.2_Missense_Mutation_p.R120H	NM_153271	NP_695003	Q8WV41	SNX33_HUMAN	sorting nexin 33	507	BAR.				cell communication		phosphatidylinositol binding|protein binding			ovary(1)	1						GACGAGGGCCGCATGGTGCAG	0.647													3	71					0	0	0.004672	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78290635	78290635	+	Missense_Mutation	SNP	C	T	T	rs117285325	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:78290635C>T	uc002bcy.3	-	13	2759	c.2759G>A	c.(2758-2760)CGA>CAA	p.R920Q	TBC1D2B_uc010bla.2_Missense_Mutation_p.D903N	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	920						intracellular	protein binding|Rab GTPase activator activity	p.D903N(1)		ovary(1)|large_intestine(1)|breast(1)	3						GTAGGCGCGTCGGTTCCGGAT	0.617													3	42					0	0	0.000978	0	0
IREB2	3658	broad.mit.edu	37	15	78755395	78755395	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:78755395T>C	uc002bdr.2	+	3	400	c.238T>C	c.(238-240)TTT>CTT	p.F80L	IREB2_uc010unb.1_5'UTR|IREB2_uc002bdq.2_Missense_Mutation_p.F80L	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	80							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		TGAAGTGCCCTTTTTCCCTGC	0.358													4	549					0	0	0.000248	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383													3	50					0	0	0.000248	0	0
BLM	641	broad.mit.edu	37	15	91333989	91333989	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:91333989C>A	uc002bpr.2	+	15	3031	c.2934C>A	c.(2932-2934)GGC>GGA	p.G978G	BLM_uc010uqh.1_Silent_p.G978G|BLM_uc010uqi.1_Silent_p.G603G|BLM_uc010bnx.2_Silent_p.G978G|BLM_uc002bps.1_Silent_p.G540G	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	978	Helicase C-terminal.				double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			AAGAATCTGGCAGAGCTGGAA	0.443			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				5	379					2.0095e-06	2.84311e-06	0.001984	1	0
Unknown	0	broad.mit.edu	37	15	102292811	102292811	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:102292811C>A	uc010usj.1	+	4	458	c.399C>A	c.(397-399)CGC>CGA	p.R133R	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CCTGCACTCGCGTGGGAACGA	0.607													5	129					3.86212e-05	5.33242e-05	0.000673	1	0
Unknown	0	broad.mit.edu	37	15	102292829	102292829	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:102292829C>G	uc010usj.1	+	4	476	c.417C>G	c.(415-417)CAC>CAG	p.H139Q	uc002bxo.2_5'Flank|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CGAGAAGACACTCGTGGAGGC	0.597													3	105					0	0	0.004482	0	0
CHTF18	63922	broad.mit.edu	37	16	841343	841343	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:841343G>A	uc002cke.3	+	8	1140	c.1077G>A	c.(1075-1077)CTG>CTA	p.L359L	RPUSD1_uc002ckb.2_5'Flank|RPUSD1_uc002ckc.2_5'Flank|RPUSD1_uc002ckd.2_5'Flank|CHTF18_uc010uus.1_3'UTR|CHTF18_uc010bre.1_RNA|CHTF18_uc002ckf.3_Silent_p.L387L|CHTF18_uc010brf.2_5'UTR|CHTF18_uc002ckg.3_5'UTR	NM_022092	NP_071375	Q8WVB6	CTF18_HUMAN	CTF18, chromosome transmission fidelity factor	359					cell cycle|DNA replication	nucleus	ATP binding|DNA binding|nucleoside-triphosphatase activity			kidney(1)	1		Hepatocellular(780;0.00335)				AGGCTGGGCTGGACCCGAGCC	0.687													3	40					0	0	0.000248	0	0
SRRM2	23524	broad.mit.edu	37	16	2814637	2814637	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:2814637G>T	uc002crk.2	+	11	4657	c.4108G>T	c.(4108-4110)GAC>TAC	p.D1370Y	SRRM2_uc002crj.1_Missense_Mutation_p.D1274Y|SRRM2_uc002crl.1_Missense_Mutation_p.D1370Y|SRRM2_uc010bsu.1_Missense_Mutation_p.D1274Y	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1370	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TCCATCTCTAGACATGAAAGA	0.428													7	847					0.000157383	0.000213296	0.003080	1	0
ADCY9	115	broad.mit.edu	37	16	4163953	4163953	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:4163953G>A	uc002cvx.2	-	2	2030	c.1491C>T	c.(1489-1491)TGC>TGT	p.C497C		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	497	Cytoplasmic (Potential).|Guanylate cyclase 1.				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						CCAGGATGCCGCAAAGGACGG	0.562													5	634					0	0	0.001168	0	0
UBN1	29855	broad.mit.edu	37	16	4920917	4920917	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:4920917A>G	uc002cyb.2	+	11	1842	c.1503A>G	c.(1501-1503)AAA>AAG	p.K501K	UBN1_uc010uxw.1_Silent_p.K501K|UBN1_uc002cyc.2_Silent_p.K501K	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	501	Potential.				chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						ATGAAGAAAAAGGGGGCAGGA	0.522													5	207					0	0	0.001168	0	0
NPIP	9284	broad.mit.edu	37	16	15045638	15045638	+	Missense_Mutation	SNP	T	A	A	rs143191947	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:15045638T>A	uc002dcy.3	+	8	809	c.809T>A	c.(808-810)CTG>CAG	p.L270Q	NPIP_uc002dcx.3_RNA	NM_006985	NP_008916	Q9UND3	NPIP_HUMAN	nuclear pore complex interacting protein	270	Pro-rich.				mRNA transport|protein transport|transmembrane transport	nuclear membrane|nuclear pore					0						TCCGAGTGTCTGCTCACTCCC	0.512													5	494					0	0	0.004482	0	0
NDE1	54820	broad.mit.edu	37	16	15790648	15790648	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:15790648G>A	uc002ddt.1	+	7	921	c.878G>A	c.(877-879)CGG>CAG	p.R293Q	NDE1_uc010uzy.1_Missense_Mutation_p.R293Q|NDE1_uc002dds.2_Missense_Mutation_p.R293Q	NM_017668	NP_060138	Q9NXR1	NDE1_HUMAN	nuclear distribution gene E homolog 1	293					cell differentiation|cell division|centrosome duplication|establishment of chromosome localization|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|mitotic prometaphase|nervous system development	cleavage furrow|condensed chromosome kinetochore|cytosol|microtubule|spindle pole centrosome	microtubule binding			ovary(1)	1						GCCTCTGGGCGGAGCAGCAAG	0.577													4	281					0	0	0.001168	0	0
ABCC6	368	broad.mit.edu	37	16	16276714	16276714	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:16276714G>A	uc002den.3	-	16	2054	c.2017C>T	c.(2017-2019)CTG>TTG	p.L673L	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	673	ABC transporter 1.|Cytoplasmic (By similarity).		L -> P (in PXE; autosomal dominant).		response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		AGGGCGGACAGCAGGGAGGAC	0.622													4	278					0	0	0.001168	0	0
CDIPT	10423	broad.mit.edu	37	16	29873992	29873992	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:29873992G>A	uc002dum.2	-	2	493	c.93C>T	c.(91-93)TGC>TGT	p.C31C	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|CDIPT_uc002duk.2_5'Flank|CDIPT_uc002dul.2_Silent_p.C3C|CDIPT_uc002dun.2_Intron|LOC440356_uc010veb.1_5'Flank|LOC440356_uc002duo.2_5'Flank	NM_006319	NP_006310	O14735	CDIPT_HUMAN	CDP-diacylglycerol-inositol	31	Helical; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity|phosphatidylinositol transporter activity				0						TGAGGGGGCAGCAGGGCATGA	0.607													3	79					0	0	0.004672	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29896980	29896980	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:29896980G>A	uc002duq.3	-	8	1539	c.1299C>T	c.(1297-1299)GAC>GAT	p.D433D	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Silent_p.D363D|SEZ6L2_uc002dur.3_Silent_p.D363D|SEZ6L2_uc002dus.3_Silent_p.D319D|SEZ6L2_uc010vec.1_Silent_p.D433D|SEZ6L2_uc010ved.1_Silent_p.D389D	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	433	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GGGACTGGGCGTCACTGATGA	0.602													6	332					0	0	0.004482	0	0
ITGAM	3684	broad.mit.edu	37	16	31282346	31282346	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:31282346C>A	uc002ebq.2	+	6	597	c.499C>A	c.(499-501)CGG>AGG	p.R167R	ITGAM_uc002ebr.2_Silent_p.R167R	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	167	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						ACATGACTTTCGGCGGATGAA	0.473													7	737					2.17888e-05	3.04098e-05	0.006214	1	0
ZNF267	10308	broad.mit.edu	37	16	31927690	31927690	+	Missense_Mutation	SNP	G	A	A	rs146914846	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:31927690G>A	uc002ecs.3	+	4	2329	c.2120G>A	c.(2119-2121)CGG>CAG	p.R707Q		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	707	C2H2-type 14.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						ACTACACATCGGAGAAGTCAT	0.433													4	302					0	0	0.001168	0	0
ZNF267	10308	broad.mit.edu	37	16	31927702	31927702	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:31927702G>C	uc002ecs.3	+	4	2341	c.2132G>C	c.(2131-2133)AGT>ACT	p.S711T		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	711					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						AGAAGTCATAGTGGAGAGAGA	0.418													6	309					0	0	0.003080	0	0
SLC12A3	6559	broad.mit.edu	37	16	56924262	56924262	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:56924262G>A	uc010ccm.2	+	19	2391	c.2362G>A	c.(2362-2364)GCG>ACG	p.A788T	SLC12A3_uc002ekd.3_Missense_Mutation_p.A788T|SLC12A3_uc010ccn.2_Missense_Mutation_p.A787T	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	788	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	GATGATGCAGGCGCACAGTGA	0.458													5	260					0	0	0.001984	0	0
CTRL	1506	broad.mit.edu	37	16	67964399	67964399	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:67964399G>A	uc002euw.2	-	5	421	c.411C>T	c.(409-411)ATC>ATT	p.I137I		NM_001907	NP_001898	P40313	CTRL_HUMAN	chymotrypsin-like precursor	137	Peptidase S1.				digestion|proteolysis	extracellular space	serine-type endopeptidase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00412)|Epithelial(162;0.018)|all cancers(182;0.118)		AAACTGGCGAGATGCGTGTTG	0.602													5	672					0	0	0.003080	0	0
WWP2	11060	broad.mit.edu	37	16	69967937	69967937	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:69967937G>A	uc002exu.1	+	18	1836	c.1747G>A	c.(1747-1749)GGA>AGA	p.G583R	WWP2_uc002exv.1_Missense_Mutation_p.G583R|WWP2_uc010vlm.1_Missense_Mutation_p.G467R|WWP2_uc010vln.1_Missense_Mutation_p.G201R|WWP2_uc002exw.1_Missense_Mutation_p.G144R	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	583	HECT.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						TGAATATGCCGGAAAGAACAA	0.463													5	494					0	0	0.000602	0	0
LOC283922	283922	broad.mit.edu	37	16	74372644	74372644	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:74372644A>G	uc002fcr.2	-	9	1661	c.315T>C	c.(313-315)CCT>CCC	p.P105P	LOC283922_uc010vms.1_RNA					Homo sapiens cDNA FLJ39449 fis, clone PROST2008360, highly similar to Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit (PDPR), mRNA.												0						TACCCTTGTCAGGGGGAACAA	0.443													9	197					0	0	0.001368	0	0
TP53	7157	broad.mit.edu	37	17	7577520	7577520	+	Missense_Mutation	SNP	A	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:7577520A>C	uc002gim.2	-	7	955	c.761T>G	c.(760-762)ATC>AGC	p.I254S	TP53_uc002gig.1_Missense_Mutation_p.I254S|TP53_uc002gih.2_Missense_Mutation_p.I254S|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.I122S|TP53_uc010cng.1_Missense_Mutation_p.I122S|TP53_uc002gii.1_Missense_Mutation_p.I122S|TP53_uc010cnh.1_Missense_Mutation_p.I254S|TP53_uc010cni.1_Missense_Mutation_p.I254S|TP53_uc002gij.2_Missense_Mutation_p.I254S|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.I161S|TP53_uc002gio.2_Missense_Mutation_p.I122S	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	254	|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		I -> L (in a sporadic cancer; somatic mutation).|I -> D (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|I -> F (in a sporadic cancer; somatic mutation).|I -> N (in sporadic cancers; somatic mutation).|I -> S (in sporadic cancers; somatic mutation).|I -> T (in sporadic cancers; somatic mutation).|I -> V (in sporadic cancers; somatic mutation).|I -> M (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.I254F(7)|p.I254S(5)|p.I254fs*10(5)|p.I254V(4)|p.I254T(3)|p.L252_I254delLTI(3)|p.I254N(3)|p.I254D(3)|p.T253_I255del(2)|p.I254del(2)|p.I254I(1)|p.?(1)|p.I254fs*7(1)|p.I254fs*91(1)|p.I254_T256del(1)|p.R249_T256delRPILTIIT(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CAGTGTGATGATGGTGAGGAT	0.587		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			54	159					0	0	0.003610	0	0
MYH3	4621	broad.mit.edu	37	17	10546236	10546236	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:10546236C>A	uc002gmq.1	-	14	1565	c.1488G>T	c.(1486-1488)GTG>GTT	p.V496V		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	496	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CCTGCTCCAGCACGAACATGT	0.468													8	667					1.76689e-08	2.54888e-08	0.006214	1	0
COX10	1352	broad.mit.edu	37	17	13977686	13977686	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:13977686G>A	uc002gof.3	+	2	294	c.90G>A	c.(88-90)CAG>CAA	p.Q30Q	COX10_uc010vvs.1_5'UTR|COX10_uc010vvt.1_5'UTR	NM_001303	NP_001294	Q12887	COX10_HUMAN	heme A:farnesyltransferase precursor	30					heme a biosynthetic process|heme O biosynthetic process|respiratory chain complex IV assembly	integral to membrane|mitochondrial membrane	protoheme IX farnesyltransferase activity				0		all_lung(20;0.06)|Lung SC(565;0.168)		UCEC - Uterine corpus endometrioid carcinoma (92;0.106)		GAACTATACAGGACTCCCCTC	0.393													5	457					0	0	0.001168	0	0
UBB	7314	broad.mit.edu	37	17	16285491	16285491	+	Silent	SNP	C	T	T	rs16962973		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:16285491C>T	uc002gpx.2	+	2	408	c.270C>T	c.(268-270)ACC>ACT	p.T90T	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	90	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		AGACCATCACCCTGGAAGTGG	0.552													6	332					0	0	0.001168	0	0
UBB	7314	broad.mit.edu	37	17	16285497	16285497	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:16285497A>G	uc002gpx.2	+	2	414	c.276A>G	c.(274-276)GAA>GAG	p.E92E	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	92	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		TCACCCTGGAAGTGGAGCCCA	0.557													6	329					0	0	0.004482	0	0
SUPT6H	6830	broad.mit.edu	37	17	27027213	27027213	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:27027213C>G	uc002hby.2	+	34	4674	c.4584C>G	c.(4582-4584)AGC>AGG	p.S1528R	SUPT6H_uc010crt.2_Missense_Mutation_p.S1528R	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1528	Poly-Ser.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					GCAGCAGCAGCAGGACCCGGA	0.542													5	821					0	0	0.001168	0	0
BLMH	642	broad.mit.edu	37	17	28593939	28593939	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:28593939C>A	uc002hez.1	-	11	1417	c.1180G>T	c.(1180-1182)GTG>TTG	p.V394L	BLMH_uc010wbn.1_Missense_Mutation_p.V307L	NM_000386	NP_000377	Q13867	BLMH_HUMAN	bleomycin hydrolase	394					proteolysis	cytoplasm|nucleus	aminopeptidase activity|carboxypeptidase activity|cysteine-type endopeptidase activity|protein binding			ovary(1)	1						GAATTCTCCACTCTCCATTTT	0.478													6	284					2.7689e-08	3.98319e-08	0.001984	1	0
UNC45B	146862	broad.mit.edu	37	17	33491089	33491089	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:33491089G>A	uc002hja.2	+	9	1152	c.1055G>A	c.(1054-1056)CGC>CAC	p.R352H	UNC45B_uc002hjb.2_Missense_Mutation_p.R352H|UNC45B_uc002hjc.2_Missense_Mutation_p.R352H|UNC45B_uc010cto.2_Missense_Mutation_p.R352H	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	352					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				GACAACACCCGCATGCTGGCC	0.552													7	855					0	0	0.001168	0	0
AMAC1	146861	broad.mit.edu	37	17	33520509	33520509	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:33520509G>A	uc002hjd.2	-	1	904	c.818C>T	c.(817-819)GCG>GTG	p.A273V		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	273	DUF6 2.					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CTTGGTGACCGCATAGCCCAC	0.592													5	581					0	0	0.001984	0	0
CASC3	22794	broad.mit.edu	37	17	38324107	38324107	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:38324107G>A	uc010cwt.1	+	10	1951	c.1656G>A	c.(1654-1656)CAG>CAA	p.Q552Q	CASC3_uc002hue.2_Silent_p.Q552Q	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	552	Necessary for localization in cytoplasmic stress granules.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						TTACAGTGCAGTTCCAGGGAC	0.502													5	835					0	0	0.001168	0	0
KRTAP1-3	81850	broad.mit.edu	37	17	39190779	39190779	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:39190779T>C	uc002hvv.2	-	1	329	c.295A>G	c.(295-297)AGT>GGT	p.S99G		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	109						extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACAGCTCCACTGCTGCCCTCC	0.652													7	124					0	0	0.001984	0	0
KRT37	8688	broad.mit.edu	37	17	39579066	39579066	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:39579066C>A	uc002hwp.1	-	3	743	c.696G>T	c.(694-696)AAG>AAT	p.K232N	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	232	Rod.|Coil 1B.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				GCTGCTCCTCCTTCAGGGACT	0.682													17	162					1.01871e-10	1.48202e-10	0.001216	1	0
G6PC	2538	broad.mit.edu	37	17	41052986	41052986	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:41052986C>A	uc002icb.1	+	1	172	c.93C>A	c.(91-93)ATC>ATA	p.I31I	LOC388387_uc002ibz.2_5'Flank|LOC388387_uc002iby.2_5'Flank|LOC388387_uc002ica.2_5'Flank|LOC388387_uc010whe.1_5'Flank|G6PC_uc010whf.1_Silent_p.I33I	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	31	Helical; (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		ACTGGTTCATCTTGGTGTCCG	0.488									Glycogen_Storage_Disease_type_Ia				5	447					0.000157383	0.000213296	0.003080	1	0
Unknown	0	broad.mit.edu	37	17	45105705	45105705	+	RNA	SNP	A	G	G	rs147936028	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:45105705A>G	uc010wki.1	+	5		c.1307A>G								Homo sapiens cDNA FLJ42521 fis, clone BRACE3000973.																		GCCTGGCACGAAATGCAGTTT	0.303													8	701					0	0	0.001368	0	0
SP6	80320	broad.mit.edu	37	17	45925522	45925522	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:45925522A>G	uc002img.1	-	2	606	c.274T>C	c.(274-276)TTT>CTT	p.F92L	SP6_uc002imh.1_Missense_Mutation_p.F92L	NM_199262	NP_954871	Q3SY56	SP6_HUMAN	Sp6 transcription factor	92					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AGCTTGGAAAAGGGGCCCGGG	0.642													3	144					0	0	0.000248	0	0
BZRAP1	9256	broad.mit.edu	37	17	56388381	56388381	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:56388381G>A	uc002ivx.3	-	19	4146	c.3275C>T	c.(3274-3276)CCG>CTG	p.P1092L	BZRAP1_uc010dcs.2_Missense_Mutation_p.P1032L|BZRAP1_uc010wnt.1_Missense_Mutation_p.P1092L	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1092	Pro-rich.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCTTGGGTGCGGTGAGGGGCA	0.697													3	37					0	0	0.000248	0	0
CLTC	1213	broad.mit.edu	37	17	57763126	57763126	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:57763126C>T	uc002ixq.1	+	30	5227	c.4784C>T	c.(4783-4785)GCC>GTC	p.A1595V	CLTC_uc002ixp.2_Missense_Mutation_p.A1595V|CLTC_uc002ixr.1_Missense_Mutation_p.A1599V	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1595	Heavy chain arm.|Proximal segment.|Trimerization (By similarity).				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity	p.A1595V(1)	CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					ATGGATTTTGCCATGCCCTAT	0.398			T	ALK|TFE3	ALCL|renal 								6	643					0	0	0.001168	0	0
NAPG	8774	broad.mit.edu	37	18	10539775	10539775	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr18:10539775C>A	uc002kon.2	+	6	502	c.275C>A	c.(274-276)CCA>CAA	p.P92Q	NAPG_uc010wzr.1_Missense_Mutation_p.P10Q|NAPG_uc002koo.2_Missense_Mutation_p.P5Q|NAPG_uc002kop.2_Missense_Mutation_p.P5Q	NM_003826	NP_003817	Q99747	SNAG_HUMAN	N-ethylmaleimide-sensitive factor attachment	92					cellular membrane fusion|intra-Golgi vesicle-mediated transport|intracellular protein transport|protein complex assembly|protein stabilization	membrane|membrane fraction|mitochondrion	protein binding				0						CAGAAACTACCAGAGGCCGTT	0.443													4	344					0.00307968	0.00399505	0.003080	1	0
C19orf36	113177	broad.mit.edu	37	19	2097041	2097041	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:2097041C>A	uc002luw.1	+	1	174	c.97C>A	c.(97-99)CGC>AGC	p.R33S	C19orf36_uc002lux.1_Missense_Mutation_p.R33S|C19orf36_uc010xgw.1_Missense_Mutation_p.R33S|MOBKL2A_uc002luv.2_5'Flank	NM_001039846	NP_001034935	Q1ZYL8	IZUM4_HUMAN	hypothetical protein LOC113177 isoform 3	33						extracellular region					0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCTTCTACCGCCACCATGT	0.637											OREG0025135	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	298					0.00198382	0.00263316	0.001984	1	0
ZNF57	126295	broad.mit.edu	37	19	2917793	2917793	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:2917793T>C	uc002lwr.2	+	4	1322	c.1174T>C	c.(1174-1176)TAT>CAT	p.Y392H	ZNF57_uc010xha.1_Missense_Mutation_p.Y360H	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	392	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAGCAGCTCTATAAATGTGA	0.438													5	361					0	0	0.002450	0	0
ZNF57	126295	broad.mit.edu	37	19	2917842	2917842	+	Missense_Mutation	SNP	G	A	A	rs149690257	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:2917842G>A	uc002lwr.2	+	4	1371	c.1223G>A	c.(1222-1224)CGA>CAA	p.R408Q	ZNF57_uc010xha.1_Missense_Mutation_p.R376Q	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	408	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AGATCATTCCGAGGTCATTTG	0.428													5	337					0	0	0.001368	0	0
ZNF57	126295	broad.mit.edu	37	19	2917901	2917901	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:2917901A>G	uc002lwr.2	+	4	1430	c.1282A>G	c.(1282-1284)ACC>GCC	p.T428A	ZNF57_uc010xha.1_Missense_Mutation_p.T396A	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	428	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGTGGAAAAACCTTCACTTG	0.453													3	313					0	0	0.001984	0	0
SIRT6	51548	broad.mit.edu	37	19	4180815	4180815	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:4180815G>A	uc002lzo.2	-	2	218	c.158C>T	c.(157-159)GCC>GTC	p.A53V	ANKRD24_uc010dtt.1_5'Flank|SIRT6_uc002lzn.2_5'UTR|SIRT6_uc002lzp.2_Missense_Mutation_p.A53V|SIRT6_uc010xid.1_Intron|SIRT6_uc002lzq.2_Missense_Mutation_p.A53V|SIRT6_uc002lzr.2_Intron	NM_016539	NP_057623	Q8N6T7	SIRT6_HUMAN	sirtuin 6	53	NAD (By similarity).|Deacetylase sirtuin-type.				chromatin silencing|protein ADP-ribosylation	nuclear telomeric heterochromatin|nucleoplasm	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|protein binding|zinc ion binding			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.023)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTGATGCCGGCACCCGTGTG	0.642													4	131					0	0	0.000248	0	0
CD209	30835	broad.mit.edu	37	19	7810492	7810492	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:7810492G>A	uc002mht.2	-	4	727	c.660C>T	c.(658-660)ACC>ACT	p.T220T	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.T196T|CD209_uc002mhr.2_Silent_p.T196T|CD209_uc002mhs.2_Intron|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Silent_p.T220T|CD209_uc002mhq.2_Silent_p.T220T|CD209_uc002mhv.2_Silent_p.T196T|CD209_uc002mhx.2_Silent_p.T176T|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	220	Extracellular (Probable).|6.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTTCAGCCGGGTCAGCTCCT	0.567													5	328					0	0	0.000673	0	0
CD209	30835	broad.mit.edu	37	19	7810766	7810767	+	Nonsense_Mutation	DNP	CG	TA	TA	rs146082308		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:7810766_7810767CG>TA	uc002mht.2	-	4	452_453	c.385_386CG>TA	c.(385-387)CGG>TAG	p.R129*	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Nonsense_Mutation_p.R105*|CD209_uc002mhr.2_Nonsense_Mutation_p.R105*|CD209_uc002mhs.2_Nonsense_Mutation_p.R105*|CD209_uc002mhu.2_Nonsense_Mutation_p.R129*|CD209_uc010dvq.2_Nonsense_Mutation_p.R129*|CD209_uc002mhq.2_Nonsense_Mutation_p.R129*|CD209_uc002mhv.2_Nonsense_Mutation_p.R105*|CD209_uc002mhx.2_Nonsense_Mutation_p.R85*|CD209_uc002mhw.2_Nonsense_Mutation_p.R85*|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	129	Extracellular (Probable).|2.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						AGCCTTCAGCCGGGTCAGCTCC	0.569													6	714					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9070784	9070784	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:9070784G>A	uc002mkp.2	-	3	16866	c.16662C>T	c.(16660-16662)TCC>TCT	p.S5554S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5556	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATGATGGGGGAGGTGAAGA	0.507													5	643					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9090831	9090831	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:9090831A>G	uc002mkp.2	-	1	1188	c.984T>C	c.(982-984)CCT>CCC	p.P328P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	328	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATGGAAAAAGGGATAGCTG	0.522													5	324					0	0	0.001168	0	0
ZNF878	729747	broad.mit.edu	37	19	12155757	12155757	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:12155757C>A	uc002mta.1	-	5	600	c.600G>T	c.(598-600)AGG>AGT	p.R200S		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	153	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AACTGGGAAACCTGAATGCTT	0.423													10	575					1.61879e-10	2.34839e-10	0.001368	1	0
ZNF844	284391	broad.mit.edu	37	19	12187307	12187307	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:12187307G>C	uc002mtb.2	+	4	1515	c.1372G>C	c.(1372-1374)GAT>CAT	p.D458H	ZNF844_uc010dym.1_Missense_Mutation_p.D301H	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	458					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCAGATCTGCCTCA	0.423													4	405					0	0	0.000602	0	0
ZNF563	147837	broad.mit.edu	37	19	12429722	12429722	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:12429722T>C	uc002mtp.2	-	4	1355	c.1117A>G	c.(1117-1119)ACG>GCG	p.T373A		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGATAACGTTTTCCCACAC	0.413													5	793					0	0	0.006122	0	0
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:12501446T>C	uc010dyt.2	-	4	1916	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	589	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCTTACATTCATACGGGTT	0.413													6	278					0	0	0.003080	0	0
ZNF443	10224	broad.mit.edu	37	19	12542146	12542146	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:12542146T>C	uc002mtu.2	-	4	1038	c.840A>G	c.(838-840)CCA>CCG	p.P280P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	280					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TACATTTATATGGTTTCTCCC	0.373													5	654					0	0	0.000978	0	0
ZNF443	10224	broad.mit.edu	37	19	12542283	12542283	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:12542283A>G	uc002mtu.2	-	4	901	c.703T>C	c.(703-705)TCT>CCT	p.S235P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	235	C2H2-type 4.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CTGTAAAAAGAAAAGGCTTTA	0.378													10	697					0	0	0.002450	0	0
ISYNA1	51477	broad.mit.edu	37	19	18547239	18547239	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:18547239C>T	uc002njd.1	-	6	710	c.660G>A	c.(658-660)CTG>CTA	p.L220L	ISYNA1_uc002nja.1_Silent_p.L92L|ISYNA1_uc002njb.1_Silent_p.L138L|ISYNA1_uc002njc.1_Silent_p.L70L|ISYNA1_uc010xqh.1_Silent_p.L18L|ISYNA1_uc002nje.1_Silent_p.L166L|ISYNA1_uc002njf.1_Silent_p.L70L	NM_016368	NP_057452	Q9NPH2	INO1_HUMAN	inositol-3-phosphate synthase 1	220					inositol biosynthetic process|phospholipid biosynthetic process	cytoplasm	binding|inositol-3-phosphate synthase activity			ovary(1)|pancreas(1)	2						TGACTTTGTCCAGCCCCGCGC	0.607													4	415					0	0	0.001168	0	0
ZNF493	284443	broad.mit.edu	37	19	21606442	21606442	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:21606442C>T	uc002npx.2	+	2	877	c.597C>T	c.(595-597)GGC>GGT	p.G199G	ZNF493_uc002npw.2_Silent_p.G327G|ZNF493_uc002npy.2_Silent_p.G199G	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	199	C2H2-type 7; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGAATGTGGCAAAGCCTTTA	0.333													20	208					0	0	0.001882	0	0
ZNF493	284443	broad.mit.edu	37	19	21606712	21606712	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:21606712T>C	uc002npx.2	+	2	1147	c.867T>C	c.(865-867)TCT>TCC	p.S289S	ZNF493_uc002npw.2_Silent_p.S417S|ZNF493_uc002npy.2_Silent_p.S289S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	289	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATAAGGAGTCTTCACACCTTA	0.348													7	273					0	0	0.004990	0	0
ZNF208	7757	broad.mit.edu	37	19	22156786	22156786	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:22156786A>G	uc002nqp.2	-	4	1199	c.1050T>C	c.(1048-1050)TTT>TTC	p.F350F	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGAACTTACTAAAGGCTTTGC	0.413													3	241					0	0	0.000602	0	0
ZNF98	148198	broad.mit.edu	37	19	22574657	22574657	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:22574657T>C	uc002nqt.2	-	4	1502	c.1380A>G	c.(1378-1380)AAA>AAG	p.K460K		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	460					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				ATTTGTAGGGTTTCTCTCCAG	0.373													6	167					0	0	0.000978	0	0
ZNF91	7644	broad.mit.edu	37	19	23544724	23544724	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:23544724T>C	uc002nre.2	-	4	1170	c.1057A>G	c.(1057-1059)AAA>GAA	p.K353E	ZNF91_uc010xrj.1_Missense_Mutation_p.K321E	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	353	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CCACATTCTTTACATTTGTAG	0.373													7	361					0	0	0.007413	0	0
ZNF91	7644	broad.mit.edu	37	19	23544783	23544783	+	Missense_Mutation	SNP	C	T	T	rs410211		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:23544783C>T	uc002nre.2	-	4	1111	c.998G>A	c.(997-999)CGT>CAT	p.R333H	ZNF91_uc010xrj.1_Missense_Mutation_p.R301H	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	333	C2H2-type 7.			R -> H (in Ref. 1; AAA59469).		nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAACGGCTAAAAGC	0.393													7	540					0	0	0.001855	0	0
ZNF91	7644	broad.mit.edu	37	19	23544808	23544808	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:23544808C>T	uc002nre.2	-	4	1086	c.973G>A	c.(973-975)GAA>AAA	p.E325K	ZNF91_uc010xrj.1_Missense_Mutation_p.E293K	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	325	C2H2-type 7.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CCACATTCTTCACATTTGTAG	0.388													6	544					0	0	0.003080	0	0
ZNF91	7644	broad.mit.edu	37	19	23544867	23544867	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:23544867T>C	uc002nre.2	-	4	1027	c.914A>G	c.(913-915)CAT>CGT	p.H305R	ZNF91_uc010xrj.1_Missense_Mutation_p.H273R	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	305	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAATGGCTAAAAGC	0.413													12	489					0	0	0.003163	0	0
SLC7A10	56301	broad.mit.edu	37	19	33702366	33702366	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:33702366G>A	uc002num.2	-	6	1013	c.866C>T	c.(865-867)ACG>ATG	p.T289M	SLC7A10_uc002nul.2_Translation_Start_Site	NM_019849	NP_062823	Q9NS82	AAA1_HUMAN	solute carrier family 7, member 10	289					blood coagulation|cellular nitrogen compound metabolic process|ion transport|leukocyte migration	integral to plasma membrane	L-serine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(110;0.137)					GGACATGGCCGTGAAGTAGGC	0.642													5	210					0	0	0.001168	0	0
LIN37	55957	broad.mit.edu	37	19	36245146	36245146	+	Splice_Site	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:36245146G>A	uc002obm.2	+	9	700	c.586_splice	c.e9-1	p.P196_splice	uc002obl.2_5'Flank	NM_019104	NP_061977	Q96GY3	LIN37_HUMAN	lin-37 homolog								protein binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGTCCATGCAGCCCTCTGAGC	0.632													7	561					0	0	0.001984	0	0
ZNF529	57711	broad.mit.edu	37	19	37038483	37038483	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:37038483G>A	uc002oeh.3	-	5	1179	c.977C>T	c.(976-978)ACC>ATC	p.T326I	ZNF529_uc010xth.1_Missense_Mutation_p.T326I|ZNF529_uc010xti.1_Missense_Mutation_p.T308I|ZNF529_uc002oeg.3_Missense_Mutation_p.T221I	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	293	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					CTGATGTTCGGTAAGCTGTGA	0.378													5	298					0	0	0.001168	0	0
ZNF585A	199704	broad.mit.edu	37	19	37644110	37644110	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:37644110T>A	uc002ofo.1	-	5	922	c.691A>T	c.(691-693)ATA>TTA	p.I231L	ZNF585A_uc002ofm.1_Missense_Mutation_p.I176L|ZNF585A_uc002ofn.1_Missense_Mutation_p.I176L	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	231	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTCTCATGTATACTGAGATCT	0.433													4	485					0	0	0.001168	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38572477	38572477	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:38572477A>G	uc002ohk.2	+	3	781	c.272A>G	c.(271-273)GAG>GGG	p.E91G		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	91					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCCAAGCGGGAGGCCCTGAGA	0.577													4	336					0	0	0.001168	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580666	40580666	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:40580666T>C	uc002omy.2	-	6	1908	c.1683A>G	c.(1681-1683)GAA>GAG	p.E561E	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Silent_p.E561E|ZNF780A_uc010xvh.1_Silent_p.E562E	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	561	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					CTTTCCCACATTCCTTACATT	0.388													5	678					0	0	0.001168	0	0
PRX	57716	broad.mit.edu	37	19	40902612	40902612	+	Silent	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:40902612C>G	uc002onr.2	-	7	1916	c.1647G>C	c.(1645-1647)CCG>CCC	p.P549P	PRX_uc002onq.2_Silent_p.P410P|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	549	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].|18.				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding	p.P549P(1)		ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGACACTTTCGGCAGCTGTA	0.577													6	757					0	0	0.000673	0	0
PRX	57716	broad.mit.edu	37	19	40902620	40902620	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:40902620G>C	uc002onr.2	-	7	1908	c.1639C>G	c.(1639-1641)CAG>GAG	p.Q547E	PRX_uc002onq.2_Missense_Mutation_p.Q408E|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	547	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].|18.				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TTCGGCAGCTGTACCTCTGGA	0.587													5	744					0	0	0.006214	0	0
PRX	57716	broad.mit.edu	37	19	40902759	40902759	+	Silent	SNP	T	C	C	rs143643767		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:40902759T>C	uc002onr.2	-	7	1769	c.1500A>G	c.(1498-1500)TCA>TCG	p.S500S	PRX_uc002onq.2_Silent_p.S361S|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	500	11.|55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GTTTCATCTCTGACACTTTGG	0.572													9	801					0	0	0.001368	0	0
CARD8	22900	broad.mit.edu	37	19	48734143	48734143	+	Silent	SNP	G	A	A	rs148708617	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:48734143G>A	uc002pie.3	-	5	661	c.348C>T	c.(346-348)GAC>GAT	p.D116D	CARD8_uc002pii.3_Silent_p.D221D|CARD8_uc010xzi.1_Silent_p.D116D|CARD8_uc010els.2_Silent_p.D154D|CARD8_uc010xzj.1_Silent_p.D221D|CARD8_uc010xzk.1_Silent_p.D140D|CARD8_uc002pif.3_Silent_p.D116D|CARD8_uc002pig.3_5'UTR|CARD8_uc002pih.3_Silent_p.D171D|CARD8_uc010xzl.1_Silent_p.D171D|CARD8_uc010xzm.1_Silent_p.D221D	NM_014959	NP_055774	Q9Y2G2	CARD8_HUMAN	caspase recruitment domain family, member 8	116					negative regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion	cytoplasm|nucleus	caspase activator activity|NACHT domain binding|protein homodimerization activity				0		all_lung(116;0.000112)|Lung NSC(112;0.000192)|all_epithelial(76;0.000349)|all_neural(266;0.0228)|Ovarian(192;0.113)|Prostate(7;0.184)		OV - Ovarian serous cystadenocarcinoma(262;0.000112)|all cancers(93;0.000293)|Epithelial(262;0.0129)|GBM - Glioblastoma multiforme(486;0.0336)		GGTGCTGCAGGTCCAGGGCCA	0.597													4	171					0	0	0.001168	0	0
TRPM4	54795	broad.mit.edu	37	19	49713525	49713525	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:49713525G>A	uc002pmw.2	+	21	3263	c.3191G>A	c.(3190-3192)CGC>CAC	p.R1064H	TRPM4_uc010emu.2_Missense_Mutation_p.R919H|TRPM4_uc010yak.1_Missense_Mutation_p.R528H|TRPM4_uc002pmx.2_Missense_Mutation_p.R890H|TRPM4_uc010emv.2_Missense_Mutation_p.R949H|TRPM4_uc010yal.1_Missense_Mutation_p.R710H|TRPM4_uc002pmy.2_Missense_Mutation_p.R406H	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	1064	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CAGCGTTACCGCCTCATCCGG	0.607													105	323					0	0	0.003610	0	0
ZNF649	65251	broad.mit.edu	37	19	52394703	52394703	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:52394703C>T	uc002pxy.2	-	5	954	c.686G>A	c.(685-687)AGA>AAA	p.R229K	ZNF577_uc010ydf.1_5'Flank	NM_023074	NP_075562	Q9BS31	ZN649_HUMAN	zinc finger protein 649	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00152)|OV - Ovarian serous cystadenocarcinoma(262;0.0185)		TTTCTCTCCTCTGTGAGCTCT	0.488													4	447					0	0	0.006214	0	0
ZNF649	65251	broad.mit.edu	37	19	52394736	52394736	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:52394736T>C	uc002pxy.2	-	5	921	c.653A>G	c.(652-654)AAG>AGG	p.K218R	ZNF577_uc010ydf.1_5'Flank	NM_023074	NP_075562	Q9BS31	ZN649_HUMAN	zinc finger protein 649	218	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00152)|OV - Ovarian serous cystadenocarcinoma(262;0.0185)		GAGCCTGTACTTCTTGTAGAA	0.483													6	411					0	0	0.000673	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418													8	574					0	0	0.000673	0	0
ZNF347	84671	broad.mit.edu	37	19	53644380	53644380	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:53644380T>C	uc002qbb.1	-	5	1770	c.1701A>G	c.(1699-1701)AAA>AAG	p.K567K	ZNF347_uc010eql.1_Silent_p.K568K|ZNF347_uc002qbc.1_Silent_p.K568K	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	567					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		ATTTGTAAGGTTTTTCTCCAG	0.413													8	790					0	0	0.004990	0	0
ZNF347	84671	broad.mit.edu	37	19	53644530	53644530	+	Silent	SNP	T	C	C	rs140272621		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:53644530T>C	uc002qbb.1	-	5	1620	c.1551A>G	c.(1549-1551)GAA>GAG	p.E517E	ZNF347_uc010eql.1_Silent_p.E518E|ZNF347_uc002qbc.1_Silent_p.E518E	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	517	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		CCTTGCCACATTCATTACATT	0.398													4	635					0	0	0.000673	0	0
ZNF845	91664	broad.mit.edu	37	19	53856730	53856730	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:53856730G>A	uc010ydv.1	+	4	2919	c.2802G>A	c.(2800-2802)AAG>AAA	p.K934K	ZNF845_uc010ydw.1_Silent_p.K934K	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	934	C2H2-type 26.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAATTCATAAGACAATTCATA	0.368													4	166					0	0	0.000673	0	0
LILRP2	79166	broad.mit.edu	37	19	55221570	55221570	+	RNA	SNP	A	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:55221570A>C	uc002qgs.1	+	1		c.1970A>C			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						TACAGATGCTACGGTGCACAC	0.677													6	239					0	0	0.000673	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55349113	55349113	+	Silent	SNP	G	A	A	rs1049284		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:55349113G>A	uc002qhm.1	+	3	199	c.153G>A	c.(151-153)TCG>TCA	p.S51S	KIR2DS4_uc010yfj.1_Silent_p.S44S|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.S51S|KIR2DS4_uc002qhn.1_5'UTR	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	51	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AATGTTGGTCGGATGTCATGT	0.502													5	822					0	0	0.000602	0	0
ZNF551	90233	broad.mit.edu	37	19	58199410	58199410	+	Silent	SNP	T	C	C	rs143357923		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:58199410T>C	uc002qpw.3	+	3	1942	c.1719T>C	c.(1717-1719)TGT>TGC	p.C573C	ZNF551_uc002qpv.3_Silent_p.C516C|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	589	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTTATGAATGTAGTGAATGTG	0.443													6	542					0	0	0.004007	0	0
TMEM18	129787	broad.mit.edu	37	2	669842	669842	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:669842G>A	uc002qwl.2	-	4	336	c.242C>T	c.(241-243)TCG>TTG	p.S81L	TMEM18_uc002qwk.2_RNA	NM_152834	NP_690047	Q96B42	TMM18_HUMAN	transmembrane protein 18	81					cell migration	integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;5.27e-05)|all_epithelial(98;2.11e-06)|Ovarian(717;0.0253)		all cancers(51;1.95e-21)|Epithelial(75;9.47e-21)|OV - Ovarian serous cystadenocarcinoma(76;8.15e-18)|GBM - Glioblastoma multiforme(21;0.0285)		CTGGTATTTCGAAAATAATCT	0.368													13	99					0	0	0.001368	0	0
MBOAT2	129642	broad.mit.edu	37	2	9008617	9008617	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:9008617G>T	uc002qzg.1	-	9	1079	c.946C>A	c.(946-948)CGC>AGC	p.R316S	MBOAT2_uc010yix.1_Missense_Mutation_p.R316S	NM_138799	NP_620154	Q6ZWT7	MBOA2_HUMAN	O-acyltransferase (membrane bound) domain	316					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AAGTCCCAGCGAGCTGCTCCA	0.338													4	566					0.00448238	0.00577107	0.004482	1	0
C2orf16	84226	broad.mit.edu	37	2	27804634	27804634	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:27804634G>A	uc002rkz.3	+	1	5246	c.5195G>A	c.(5194-5196)AGA>AAA	p.R1732K	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1732	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|13.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CCCTCAGAGAGAAGCCATCAC	0.562													7	841					0	0	0.001168	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43937667	43937667	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:43937667A>G	uc010yny.1	+	14	2337	c.2254A>G	c.(2254-2256)AGT>GGT	p.S752G	PLEKHH2_uc002rte.3_Missense_Mutation_p.S752G|PLEKHH2_uc002rtf.3_Missense_Mutation_p.S751G	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	752	PH 1.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TATTGAACTTAGTGCATCCTG	0.299													3	274					0	0	0.004672	0	0
SMYD1	150572	broad.mit.edu	37	2	88387579	88387579	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:88387579G>A	uc002ssr.2	+	3	515	c.513G>A	c.(511-513)TCG>TCA	p.S171S	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_5'Flank	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	171	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AGTACATCTCGCACATCTTCG	0.607													5	171					0	0	0.000602	0	0
SULT1C2	6819	broad.mit.edu	37	2	108917367	108917367	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:108917367G>A	uc002tdy.2	+	4	804	c.351G>A	c.(349-351)CCG>CCA	p.P117P	SULT1C2_uc010ywp.1_Silent_p.P32P|SULT1C2_uc002tdx.2_Silent_p.P128P|SULT1C2_uc010ywq.1_Silent_p.P131P	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	117					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						TGCTGCCACCGTCTTTCTGGG	0.488													80	375					0	0	0.003610	0	0
SLC35F5	80255	broad.mit.edu	37	2	114476751	114476751	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:114476751G>A	uc002tku.1	-	14	1900	c.1476C>T	c.(1474-1476)TGC>TGT	p.C492C	SLC35F5_uc002tkt.2_RNA	NM_025181	NP_079457	Q8WV83	S35F5_HUMAN	solute carrier family 35, member F5	492					transport	integral to membrane					0						GATGTTTTCTGCATATAAAAG	0.328													5	328					0	0	0.001168	0	0
POTEF	728378	broad.mit.edu	37	2	130877893	130877893	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:130877893G>A	uc010fmh.2	-	3	596	c.196C>T	c.(196-198)CGC>TGC	p.R66C		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	66						cell cortex	ATP binding			skin(3)|ovary(2)	5						AAGCAGTGGCGGCACCACTTG	0.602													8	757					0	0	0.003080	0	0
LRP1B	53353	broad.mit.edu	37	2	141771238	141771238	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:141771238T>A	uc002tvj.1	-	14	3239	c.2267A>T	c.(2266-2268)TAT>TTT	p.Y756F	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	756	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACCATTCATATAATCAGTCCA	0.388										TSP Lung(27;0.18)			89	387					0	0	0.003610	0	0
STK39	27347	broad.mit.edu	37	2	169020276	169020276	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:169020276T>C	uc002uea.2	-	4	705	c.545A>G	c.(544-546)TAT>TGT	p.Y182C		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	182	Protein kinase.				response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						TCTGTGTAGATAGTCTAAGCC	0.378													5	265					0	0	0.000602	0	0
LRP2	4036	broad.mit.edu	37	2	170092528	170092528	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:170092528C>T	uc002ues.2	-	29	4955	c.4742G>A	c.(4741-4743)CGA>CAA	p.R1581Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1581	LDL-receptor class B 12.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CATGCTGGCTCGCTCGATGCG	0.512													10	124					0	0	0.006214	0	0
MYO3B	140469	broad.mit.edu	37	2	171256757	171256757	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:171256757C>A	uc002ufy.2	+	17	1994	c.1851C>A	c.(1849-1851)TTC>TTA	p.F617L	MYO3B_uc002ufv.2_Missense_Mutation_p.F604L|MYO3B_uc010fqb.1_Missense_Mutation_p.F604L|MYO3B_uc002ufz.2_Missense_Mutation_p.F617L|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	617	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						ACATTGAGTTCGCAGCTATTT	0.403													6	654					0.00448238	0.00577107	0.004482	1	0
ITGA6	3655	broad.mit.edu	37	2	173332250	173332250	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:173332250G>A	uc002uhp.1	+	3	552	c.349G>A	c.(349-351)GTC>ATC	p.V117I	ITGA6_uc010fqk.1_Missense_Mutation_p.V3I|ITGA6_uc010zdy.1_Missense_Mutation_p.V3I|ITGA6_uc002uho.1_Missense_Mutation_p.V117I	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	117	Extracellular (Potential).|FG-GAP 2.				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			GTGGATGGGGGTCACCGTCCA	0.522													5	281					0	0	0.001984	0	0
HNRNPA3	220988	broad.mit.edu	37	2	178082570	178082570	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:178082570G>A	uc002ulb.1	+	8	1064	c.958G>A	c.(958-960)GGT>AGT	p.G320S	HNRNPA3_uc002ulc.1_Missense_Mutation_p.G320S|HNRNPA3_uc002uld.2_Missense_Mutation_p.G298S|HNRNPA3_uc002ule.2_Missense_Mutation_p.G97S	NM_194247	NP_919223	P51991	ROA3_HUMAN	heterogeneous nuclear ribonucleoprotein A3	320	Gly-rich.					catalytic step 2 spliceosome|nucleolus|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(2)	2						AAATTTTGGCGGTGGTAAGCA	0.408													4	537					0	0	0.000602	0	0
ANKAR	150709	broad.mit.edu	37	2	190554683	190554683	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:190554683T>C	uc002uqw.1	+	2	819	c.819T>C	c.(817-819)CCT>CCC	p.P273P	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqv.1_Silent_p.P344P	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	344						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			TGCTTCAGCCTTTTTCAGGTA	0.289													4	373					0	0	0.000602	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:207025358A>G	uc002vbf.1	+	3	285	c.127A>G	c.(127-129)AGC>GGC	p.S43G	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Missense_Mutation_p.S43G|EEF1B2_uc002vbh.1_Missense_Mutation_p.S43G|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	43	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						AGCCGTGTCCAGCCCACCGCC	0.468													7	491					0	0	0.006214	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:207025366G>A	uc002vbf.1	+	3	293	c.135G>A	c.(133-135)CCG>CCA	p.P45P	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Silent_p.P45P|EEF1B2_uc002vbh.1_Silent_p.P45P|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	45	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						CCAGCCCACCGCCTGCCGACT	0.448													6	491					0	0	0.001984	0	0
IKZF2	22807	broad.mit.edu	37	2	213872653	213872653	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:213872653G>A	uc002vem.2	-	8	1181	c.1012C>T	c.(1012-1014)CAG>TAG	p.Q338*	IKZF2_uc010fuu.2_Nonsense_Mutation_p.Q193*|IKZF2_uc002vej.2_Nonsense_Mutation_p.Q285*|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Nonsense_Mutation_p.Q264*|IKZF2_uc002vel.2_Nonsense_Mutation_p.Q259*|IKZF2_uc010fuw.2_Nonsense_Mutation_p.Q112*|IKZF2_uc010fux.2_Nonsense_Mutation_p.Q112*|IKZF2_uc010fuy.2_Nonsense_Mutation_p.Q266*|IKZF2_uc002ven.2_Nonsense_Mutation_p.Q312*|IKZF2_uc002vei.2_Nonsense_Mutation_p.Q116*	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	338					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		GGCGGGTGCTGCATCAGAGGG	0.493													5	285					0	0	0.003080	0	0
ZNF142	7701	broad.mit.edu	37	2	219503301	219503301	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:219503301G>A	uc002vin.2	-	10	5261	c.4825C>T	c.(4825-4827)CGC>TGC	p.R1609C	ZNF142_uc002vil.2_Missense_Mutation_p.R1570C|ZNF142_uc010fvt.2_Missense_Mutation_p.R1446C|ZNF142_uc002vim.2_Missense_Mutation_p.R1446C	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	1609	C2H2-type 30.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GCATGATGGCGCAGGCCAGCA	0.612													17	181					0	0	0.004990	0	0
STK36	27148	broad.mit.edu	37	2	219545333	219545333	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:219545333C>A	uc002viu.2	+	10	1410	c.1144C>A	c.(1144-1146)CGG>AGG	p.R382R	STK36_uc002viv.2_Silent_p.R382R	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	382					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		CAGGGAAAACCGGACCACCCC	0.552													4	102					0.000157383	0.000213296	0.003080	1	0
CYP27A1	1593	broad.mit.edu	37	2	219674449	219674449	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:219674449G>A	uc002viz.3	+	2	839	c.405G>A	c.(403-405)GAG>GAA	p.E135E		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	135					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	TATGGAAGGAGCACCGGGACC	0.622													4	295					0	0	0.000602	0	0
NOP56	10528	broad.mit.edu	37	20	2635158	2635158	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:2635158G>A	uc002wgh.2	+	4	360	c.307G>A	c.(307-309)GCA>ACA	p.A103T	NOP56_uc010zpy.1_RNA|NOP56_uc002wgi.2_5'UTR|SNORA51_uc002wgk.1_5'Flank|NOP56_uc002wgm.1_5'Flank|SNORD86_uc010gaq.1_5'Flank|SNORD56_uc010gar.2_5'Flank|SNORD57_uc002wgo.1_5'Flank	NM_006392	NP_006383	O00567	NOP56_HUMAN	nucleolar protein 5A	103					rRNA processing	box C/D snoRNP complex|pre-snoRNP complex	protein binding|snoRNA binding			ovary(1)|pancreas(1)	2						GATTGGTGCCGCAATACAGGA	0.517													4	449					0	0	0.000602	0	0
PROKR2	128674	broad.mit.edu	37	20	5283346	5283346	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:5283346C>A	uc010zqw.1	-	2	495	c.495G>T	c.(493-495)ATG>ATT	p.M165I	PROKR2_uc010zqx.1_Missense_Mutation_p.M165I|PROKR2_uc010zqy.1_Missense_Mutation_p.M165I	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	165	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity	p.M165I(1)		ovary(3)|central_nervous_system(1)|pancreas(1)	5						TTTGATAATTCATCCGTGGTT	0.473										HNSCC(71;0.22)			5	559					0.00307968	0.00399505	0.003080	1	0
BTBD3	22903	broad.mit.edu	37	20	11899129	11899129	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:11899129G>A	uc002wnz.2	+	1	565	c.206G>A	c.(205-207)CGT>CAT	p.R69H	BTBD3_uc002wny.2_Missense_Mutation_p.R8H|BTBD3_uc002woa.2_Missense_Mutation_p.R8H|BTBD3_uc010zrf.1_5'UTR|BTBD3_uc010zrg.1_5'Flank|BTBD3_uc010zrh.1_5'Flank	NM_014962	NP_055777	Q9Y2F9	BTBD3_HUMAN	BTB/POZ domain containing protein 3 isoform a	69										ovary(2)|central_nervous_system(1)	3						ATATTCCCCCGTAAAAAGCCA	0.413													6	736					0	0	0.001984	0	0
TASP1	55617	broad.mit.edu	37	20	13463964	13463964	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:13463964G>A	uc002woi.2	-	11	1012	c.895C>T	c.(895-897)CGC>TGC	p.R299C	TASP1_uc010zri.1_RNA|TASP1_uc002woh.2_Missense_Mutation_p.R276C|TASP1_uc010zrj.1_RNA	NM_017714	NP_060184	Q9H6P5	TASP1_HUMAN	taspase 1 precursor	299					asparagine catabolic process via L-aspartate|positive regulation of transcription, DNA-dependent|protein maturation		threonine-type endopeptidase activity				0						AGTATGGTGCGCACAAGATGC	0.428													6	538					0	0	0.003080	0	0
FRG1B	284802	broad.mit.edu	37	20	29628300	29628300	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:29628300G>A	uc010ztl.1	+	3	244	c.212G>A	c.(211-213)AGT>AAT	p.S71N	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23N					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAGCAAAAAGTAAAACAGCA	0.358													8	303					0	0	0.002299	0	0
C20orf186	149954	broad.mit.edu	37	20	31671416	31671416	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:31671416G>A	uc010zue.1	+	3	428	c.413G>A	c.(412-414)CGA>CAA	p.R138Q		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	138	Gly-rich.					cytoplasm|extracellular region	lipid binding				0						GGCCTCGGGCGATACAGGGCA	0.622													4	242					0	0	0.000602	0	0
DHX35	60625	broad.mit.edu	37	20	37632537	37632537	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:37632537G>A	uc002xjh.2	+	11	1009	c.998G>A	c.(997-999)CGC>CAC	p.R333H	DHX35_uc010zwa.1_Missense_Mutation_p.R178H|DHX35_uc010zwb.1_Missense_Mutation_p.R178H|DHX35_uc010zwc.1_Missense_Mutation_p.R302H	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	333	Helicase C-terminal.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGGGTGTCACGCAGTGTCAGA	0.468													5	536					0	0	0.004482	0	0
ZHX3	23051	broad.mit.edu	37	20	39830760	39830760	+	Missense_Mutation	SNP	G	A	A	rs148495510		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:39830760G>A	uc002xjs.1	-	3	3175	c.2797C>T	c.(2797-2799)CGT>TGT	p.R933C	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Intron|ZHX3_uc002xjt.1_Missense_Mutation_p.R933C|ZHX3_uc002xju.1_Missense_Mutation_p.R933C|ZHX3_uc010ggg.1_Missense_Mutation_p.R933C	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	933					negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				TCAGGGACACGGGGCTCCCAC	0.597													32	247					0	0	0.002445	0	0
PLTP	5360	broad.mit.edu	37	20	44533619	44533619	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:44533619G>A	uc002xqn.1	-	9	924	c.844C>T	c.(844-846)CGG>TGG	p.R282W	PLTP_uc002xql.1_Missense_Mutation_p.R194W|PLTP_uc002xqm.1_Missense_Mutation_p.R302W|PLTP_uc002xqo.1_Missense_Mutation_p.R230W|PLTP_uc002xqp.1_Missense_Mutation_p.R282W|PLTP_uc002xqq.1_Missense_Mutation_p.R251W|PLTP_uc010zxj.1_Missense_Mutation_p.R187W|PLTP_uc010ghj.1_Missense_Mutation_p.R282W	NM_006227	NP_006218	P55058	PLTP_HUMAN	phospholipid transfer protein isoform a	282			R -> Q.		cellular lipid metabolic process|lipid transport	extracellular region	lipid binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GCCCCCGCCCGGAAGTAGCTC	0.602													4	271					0	0	0.000602	0	0
ZMYND8	23613	broad.mit.edu	37	20	45839477	45839477	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:45839477C>T	uc002xta.1	-	22	3744	c.3490G>A	c.(3490-3492)GAT>AAT	p.D1164N	ZMYND8_uc010ghq.1_Silent_p.P800P|ZMYND8_uc010ghr.1_Missense_Mutation_p.D1094N|ZMYND8_uc002xst.1_Missense_Mutation_p.D1046N|ZMYND8_uc002xsu.1_Missense_Mutation_p.D1065N|ZMYND8_uc002xsv.1_Missense_Mutation_p.D1092N|ZMYND8_uc002xsw.1_Missense_Mutation_p.D898N|ZMYND8_uc002xsx.1_Missense_Mutation_p.D870N|ZMYND8_uc002xsy.1_Missense_Mutation_p.D1121N|ZMYND8_uc002xsz.1_Missense_Mutation_p.D1083N|ZMYND8_uc010zxy.1_Missense_Mutation_p.D1219N|ZMYND8_uc002xtb.1_Missense_Mutation_p.D1166N|ZMYND8_uc002xss.2_Missense_Mutation_p.D1164N|ZMYND8_uc010zxz.1_Missense_Mutation_p.D1032N|ZMYND8_uc002xtc.1_Missense_Mutation_p.D1138N|ZMYND8_uc002xtd.1_Missense_Mutation_p.D1113N|ZMYND8_uc002xte.1_Missense_Mutation_p.D1146N|ZMYND8_uc010zya.1_Missense_Mutation_p.D1192N|ZMYND8_uc002xtf.1_Missense_Mutation_p.D1212N|ZMYND8_uc002xsr.1_Missense_Mutation_p.D263N	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	1164	Interacts with PRKCB1.						protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			GTGTTGTGATCGGAACGTGTC	0.547													36	312					0	0	0.003755	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887727	47887727	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:47887727G>A	uc002xui.2	-	3	869	c.622C>T	c.(622-624)CTG>TTG	p.L208L		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	208							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			AATATGCCCAGTACATGGAGA	0.453													5	547					0	0	0.001984	0	0
SLC9A8	23315	broad.mit.edu	37	20	48472026	48472026	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:48472026C>A	uc002xuv.1	+	8	831	c.621C>A	c.(619-621)GCC>GCA	p.A207A	SLC9A8_uc010zym.1_5'UTR|SLC9A8_uc010zyj.1_Silent_p.A223A|SLC9A8_uc010zyk.1_Missense_Mutation_p.H196N|SLC9A8_uc010zyl.1_Missense_Mutation_p.H168N|SLC9A8_uc010gib.1_Missense_Mutation_p.H162N	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	207	Helical; (Potential).					Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			CCACTATTGCCATTTTCAATG	0.463													5	555					1.06961e-07	1.52169e-07	0.003080	1	0
KCNQ2	3785	broad.mit.edu	37	20	62044927	62044927	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:62044927G>A	uc002yey.1	-	15	1816	c.1639C>T	c.(1639-1641)CGG>TGG	p.R547W	KCNQ2_uc002yez.1_Missense_Mutation_p.R516W|KCNQ2_uc002yfa.1_Missense_Mutation_p.R529W|KCNQ2_uc002yfb.1_Missense_Mutation_p.R519W	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	547	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	ACCAGGAACCGCATGACACTG	0.657													53	366					0	0	0.003610	0	0
BRWD1	54014	broad.mit.edu	37	21	40600424	40600424	+	Splice_Site	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr21:40600424A>G	uc002yxk.1	-	27	3347	c.3208_splice	c.e27+1	p.C1070_splice	BRWD1_uc010goc.1_Splice_Site|BRWD1_uc002yxl.2_Splice_Site_p.C1070_splice|BRWD1_uc010god.1_Splice_Site_p.C36_splice	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				GGATAGACTTACAAGACTGCC	0.303													3	169					0	0	0.004672	0	0
RIPK4	54101	broad.mit.edu	37	21	43161940	43161940	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr21:43161940G>A	uc002yzn.1	-	8	1461	c.1413C>T	c.(1411-1413)GGC>GGT	p.G471G		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	471						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						ACGGGGTGGAGCCCCTACGGT	0.652													4	332					0	0	0.001984	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999774	45999774	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr21:45999774T>C	uc002zfl.1	-	1	708	c.682A>G	c.(682-684)ATA>GTA	p.I228V	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	228	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGCCTGCATATGGGGCGGCAG	0.682													6	454					0	0	0.002450	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999841	45999841	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr21:45999841A>G	uc002zfl.1	-	1	641	c.615T>C	c.(613-615)TGT>TGC	p.C205C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	205	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						AAGCCGGCTGACAGCTAGACT	0.632													4	829					0	0	0.001984	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011553	46011553	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr21:46011553A>G	uc002zfm.2	-	1	834	c.813T>C	c.(811-813)TGT>TGC	p.C271C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	271	29 X 5 AA repeats of C-C-X(3).|24.					keratin filament					0						AGACGGGCACACAGCAGGCGT	0.647													5	728					0	0	0.000673	0	0
CDC45	8318	broad.mit.edu	37	22	19492919	19492919	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:19492919C>T	uc002zpr.2	+	10	815	c.739C>T	c.(739-741)CGC>TGC	p.R247C	CDC45_uc011agz.1_Missense_Mutation_p.R242C|CDC45_uc011aha.1_Missense_Mutation_p.R279C|CDC45_uc002zps.2_Missense_Mutation_p.R247C|CDC45_uc002zpt.2_Missense_Mutation_p.R201C	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	247					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						TGTCCTGCAGCGCCACGTTTC	0.537													10	144					0	0	0.001855	0	0
GGT1	2678	broad.mit.edu	37	22	25023539	25023539	+	Silent	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:25023539C>G	uc003aan.1	+	12	1648	c.1161C>G	c.(1159-1161)GTC>GTG	p.V387V	GGT1_uc003aas.1_Silent_p.V387V|GGT1_uc003aat.1_Silent_p.V387V|GGT1_uc003aau.1_Silent_p.V387V|GGT1_uc003aav.1_Silent_p.V387V|GGT1_uc003aaw.1_Silent_p.V387V|GGT1_uc003aax.1_Silent_p.V387V|GGT1_uc003aay.1_Silent_p.V43V	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	387	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	TGTCTGTCGTCGCAGAGGACG	0.657													4	117					0	0	0.001168	0	0
NEFH	4744	broad.mit.edu	37	22	29885739	29885739	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:29885739T>A	uc003afo.2	+	4	2181	c.2110T>A	c.(2110-2112)TCC>ACC	p.S704T	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	710	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.|21.				cell death|nervous system development	neurofilament					0						AGAAGCAAAGTCCCCTGAGAA	0.557													6	511					0	0	0.001368	0	0
CCDC157	550631	broad.mit.edu	37	22	30772567	30772567	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:30772567T>C	uc011aku.1	+	12	2752	c.2092T>C	c.(2092-2094)TCT>CCT	p.S698P	CCDC157_uc011akv.1_Missense_Mutation_p.S698P|uc003aho.1_5'Flank	NM_001017437	NP_001017437	Q569K6	CC157_HUMAN	coiled-coil domain containing 157	698										central_nervous_system(1)	1						CACATCCCCATCTCGGCAGCC	0.667													8	722					0	0	0.002450	0	0
SFI1	9814	broad.mit.edu	37	22	32012737	32012737	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:32012737G>A	uc003ale.2	+	30	3700	c.3307G>A	c.(3307-3309)GCA>ACA	p.A1103T	SFI1_uc003alf.2_Missense_Mutation_p.A1072T|SFI1_uc003alg.2_Missense_Mutation_p.A1021T|SFI1_uc011alp.1_Missense_Mutation_p.A1009T|SFI1_uc011alq.1_Missense_Mutation_p.A1048T|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA|SFI1_uc003ali.2_Missense_Mutation_p.A195T|SFI1_uc003alj.2_Missense_Mutation_p.A237T	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	1103					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						GCAGGTGTCAGCACAGCGGGC	0.612													6	698					0	0	0.003080	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120006	38120006	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:38120006T>C	uc003atr.2	+	7	1714	c.1443T>C	c.(1441-1443)TGT>TGC	p.C481C	TRIOBP_uc003atu.2_Silent_p.C309C|TRIOBP_uc003atq.1_Silent_p.C481C|TRIOBP_uc003ats.1_Silent_p.C309C	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	481					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAACATCCTGTGCCCAGCGGG	0.592													7	379					0	0	0.002299	0	0
MICALL1	85377	broad.mit.edu	37	22	38327854	38327854	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:38327854T>C	uc003aui.2	+	10	2014	c.1930T>C	c.(1930-1932)TCC>CCC	p.S644P		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	644	Pro-rich.					cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					ACCTGCAGCGTCCCCAGCCAC	0.582													10	262					0	0	0.003610	0	0
CYB5R3	1727	broad.mit.edu	37	22	43032758	43032758	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:43032758G>A	uc003bcz.2	-	2	200	c.116C>T	c.(115-117)CCG>CTG	p.P39L	CYB5R3_uc010gzc.1_5'UTR|CYB5R3_uc003bcw.2_Missense_Mutation_p.P29L|CYB5R3_uc011aps.1_Missense_Mutation_p.P72L|CYB5R3_uc003bcy.2_Missense_Mutation_p.P16L|CYB5R3_uc003bcx.2_Missense_Mutation_p.P16L	NM_000398	NP_000389	P00387	NB5R3_HUMAN	cytochrome b5 reductase 3 isoform m	39					blood circulation|cholesterol biosynthetic process|water-soluble vitamin metabolic process	endoplasmic reticulum membrane|hemoglobin complex|mitochondrial outer membrane	cytochrome-b5 reductase activity			skin(1)	1					NADH(DB00157)	CTTGATGTCCGGGCTCTCGAG	0.617													20	94					0	0	0.002780	0	0
TTC38	55020	broad.mit.edu	37	22	46684369	46684369	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:46684369G>A	uc003bhi.2	+	11	1042	c.966G>A	c.(964-966)AAG>AAA	p.K322K	TTC38_uc011aqx.1_Silent_p.K264K	NM_017931	NP_060401	Q5R3I4	TTC38_HUMAN	tetratricopeptide repeat domain 38	322							binding			ovary(1)	1						TGGCCCGGAAGCACAGCCGAG	0.642													4	557					0	0	0.001984	0	0
TATDN2	9797	broad.mit.edu	37	3	10312110	10312110	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:10312110G>A	uc003bvg.2	+	4	1825	c.1244G>A	c.(1243-1245)CGC>CAC	p.R415H	TATDN2_uc003bvf.2_Missense_Mutation_p.R415H|TATDN2_uc011atr.1_Missense_Mutation_p.R415H|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	415						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						AGCCGGAGCCGCATGAGTGAT	0.567													6	469					0	0	0.001984	0	0
IQSEC1	9922	broad.mit.edu	37	3	12978096	12978096	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:12978096G>A	uc003bxt.2	-	3	471	c.462C>T	c.(460-462)TTC>TTT	p.F154F	IQSEC1_uc003bxu.3_Silent_p.F32F|IQSEC1_uc011auw.1_Silent_p.F140F	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	154	IQ.				regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						GCAAGCGCTCGAAGTTCTTGT	0.577													4	102					0	0	0.000248	0	0
FGD5	152273	broad.mit.edu	37	3	14862040	14862040	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:14862040A>G	uc003bzc.2	+	1	1572	c.1462A>G	c.(1462-1464)AAG>GAG	p.K488E	FGD5_uc011avk.1_Missense_Mutation_p.K488E	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	488					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CCACTCTGGGAAGGTGGCCGG	0.617													3	223					0	0	0.000602	0	0
RPL15	6138	broad.mit.edu	37	3	23959353	23959353	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:23959353G>T	uc003ccn.2	+	2	39	c.3G>T	c.(1-3)ATG>ATT	p.M1I	NKIRAS1_uc003cck.2_Intron|NKIRAS1_uc003ccj.2_5'Flank|NKIRAS1_uc003ccl.2_5'Flank|NKIRAS1_uc003ccm.2_5'Flank|RPL15_uc011awi.1_Missense_Mutation_p.M1I|RPL15_uc011awj.1_Missense_Mutation_p.M1I|RPL15_uc003cco.2_Missense_Mutation_p.M1I|RPL15_uc003ccp.2_Missense_Mutation_p.M1I|RPL15_uc003ccq.2_Missense_Mutation_p.M1I|RPL15_uc003ccr.2_Missense_Mutation_p.M1I	NM_002948	NP_002939	P61313	RL15_HUMAN	ribosomal protein L15	1					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome			ovary(1)	1						AAGCCAAGATGGGTGCATACA	0.458													5	268					0.00307968	0.00399505	0.003080	1	0
ZNF860	344787	broad.mit.edu	37	3	32032046	32032046	+	Missense_Mutation	SNP	G	A	A	rs143925165	by1000genomes	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:32032046G>A	uc011axg.1	+	2	2024	c.1475G>A	c.(1474-1476)CGT>CAT	p.R492H		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	492	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGACCTTCCGTCACAATTCA	0.403													16	478					0	0	0.003163	0	0
MAP4	4134	broad.mit.edu	37	3	47958222	47958222	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:47958222G>A	uc003csb.2	-	7	1621	c.1095C>T	c.(1093-1095)GCC>GCT	p.A365A	MAP4_uc003csc.3_Silent_p.A365A|MAP4_uc011bbf.1_Silent_p.A342A|MAP4_uc003csf.3_Silent_p.A382A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	365	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGGGCTAAGTCCA	0.478													9	836					0	0	0.000978	0	0
MAP4	4134	broad.mit.edu	37	3	47958225	47958225	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:47958225T>C	uc003csb.2	-	7	1618	c.1092A>G	c.(1090-1092)TTA>TTG	p.L364L	MAP4_uc003csc.3_Silent_p.L364L|MAP4_uc011bbf.1_Silent_p.L341L|MAP4_uc003csf.3_Silent_p.L381L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	364	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGGGCTAAGTCCATTT	0.478													5	853					0	0	0.003080	0	0
LAMB2	3913	broad.mit.edu	37	3	49163233	49163233	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:49163233C>T	uc003cwe.2	-	18	2734	c.2435G>A	c.(2434-2436)CGC>CAC	p.R812H	LAMB2_uc003cwf.1_Missense_Mutation_p.R812H	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	812	Laminin EGF-like 6.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GAGGTCACAGCGGCGCCCAAC	0.582													4	312					0	0	0.000602	0	0
DOCK3	1795	broad.mit.edu	37	3	51370621	51370621	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:51370621G>A	uc011bds.1	+	35	3571	c.3548G>A	c.(3547-3549)CGC>CAC	p.R1183H		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1183	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GAAACATGGCGCGAGACCGGC	0.532													39	472					0	0	0.002522	0	0
KBTBD8	84541	broad.mit.edu	37	3	67049547	67049547	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:67049547G>A	uc003dmy.2	+	2	212	c.159G>A	c.(157-159)GTG>GTA	p.V53V	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	53	BTB.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		ACATTGTAGTGGAAGTGGATC	0.453													4	480					0	0	0.001168	0	0
OR5H1	26341	broad.mit.edu	37	3	97851900	97851900	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:97851900A>G	uc011bgt.1	+	1	359	c.359A>G	c.(358-360)TAT>TGT	p.Y120C		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						ACGATGGCATATGATCGCTAT	0.393													5	755					0	0	0.003080	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111785326	111785326	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:111785326G>A	uc010hqb.2	+	11	1435	c.1265G>A	c.(1264-1266)CGG>CAG	p.R422Q	TMPRSS7_uc011bhr.1_Missense_Mutation_p.R277Q	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	548	Extracellular (Potential).|LDL-receptor class A 2.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						GAGAATGGCCGGGATGAGCAA	0.498													4	403					0	0	0.001168	0	0
CEP63	80254	broad.mit.edu	37	3	134264989	134264989	+	Splice_Site	SNP	A	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:134264989A>T	uc003eqo.1	+	9	1239	c.790_splice	c.e9-2	p.A264_splice	CEP63_uc003eql.1_Splice_Site_p.A264_splice|CEP63_uc003eqm.2_Splice_Site_p.A264_splice|CEP63_uc003eqn.1_Splice_Site_p.A264_splice|CEP63_uc003eqp.1_5'Flank	NM_025180	NP_079456	Q96MT8	CEP63_HUMAN	centrosomal protein 63 isoform a						cell division|DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitosis|signal transduction in response to DNA damage|spindle assembly	centrosome|cytosol|spindle pole	protein binding			ovary(1)	1						ACTTTTTTGCAGGCTCTGCAG	0.333													3	170					0	0	0.000602	0	0
MFN1	55669	broad.mit.edu	37	3	179080210	179080210	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:179080210G>A	uc003fjs.2	+	5	602	c.476G>A	c.(475-477)CGT>CAT	p.R159H	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Missense_Mutation_p.R187H|MFN1_uc010hxc.2_Missense_Mutation_p.R12H	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	159	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			TGTCTTGTACGTGTGTTTTGG	0.403													6	438					0	0	0.001168	0	0
USP13	8975	broad.mit.edu	37	3	179474866	179474866	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:179474866C>A	uc003fkh.2	+	16	2029	c.1948C>A	c.(1948-1950)CCA>ACA	p.P650T	USP13_uc003fkf.2_3'UTR	NM_003940	NP_003931	Q92995	UBP13_HUMAN	ubiquitin thiolesterase 13	650					ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(1)	1	all_cancers(143;7.79e-15)|Ovarian(172;0.0338)|Breast(254;0.148)		OV - Ovarian serous cystadenocarcinoma(80;1e-25)|GBM - Glioblastoma multiforme(14;0.0169)			ATTGATAGACCGTATGTATCT	0.358													6	538					0.00198382	0.00263316	0.001984	1	0
DGKG	1608	broad.mit.edu	37	3	185929649	185929649	+	Nonsense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:185929649C>A	uc003fqa.2	-	21	2389	c.1852G>T	c.(1852-1854)GAA>TAA	p.E618*	DGKG_uc003fqb.2_Nonsense_Mutation_p.E579*|DGKG_uc003fqc.2_Nonsense_Mutation_p.E593*|DGKG_uc011brx.1_Nonsense_Mutation_p.E559*	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	618					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GTGCCAAATTCAAAGTACCAC	0.453													5	280					0.00307968	0.00399505	0.003080	1	0
MUC4	4585	broad.mit.edu	37	3	195515435	195515435	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:195515435C>T	uc011bto.1	-	2	3476	c.3016G>A	c.(3016-3018)GCC>ACC	p.A1006T	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGAGGGGTGGCGTGACCTGTG	0.582													4	16					0	0	0.000602	0	0
ZNF721	170960	broad.mit.edu	37	4	435653	435653	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:435653C>T	uc003gag.2	-	3	3294	c.2603G>A	c.(2602-2604)GGA>GAA	p.G868E	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.G900E|ZNF721_uc010ibe.2_Missense_Mutation_p.G856E	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	868						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCCACATTCTCCACATGTGTA	0.418													7	250					0	0	0.006214	0	0
ZNF721	170960	broad.mit.edu	37	4	436647	436647	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:436647C>T	uc003gag.2	-	3	2300	c.1609G>A	c.(1609-1611)GCC>ACC	p.A537T	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.A569T|ZNF721_uc010ibe.2_Missense_Mutation_p.A525T	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	537						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGTCTAAAGGCTTTGCCACAT	0.408													4	457					0	0	0.003163	0	0
DCUN1D4	23142	broad.mit.edu	37	4	52777312	52777312	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:52777312T>C	uc003gze.2	+	9	825	c.692T>C	c.(691-693)CTT>CCT	p.L231P	DCUN1D4_uc003gzf.2_Intron|DCUN1D4_uc011bzn.1_Missense_Mutation_p.L171P|DCUN1D4_uc003gzg.2_RNA|DCUN1D4_uc003gzh.2_Intron|DCUN1D4_uc011bzo.1_Missense_Mutation_p.L275P	NM_001040402	NP_001035492	Q92564	DCNL4_HUMAN	DCN1, defective in cullin neddylation 1, domain	231	DCUN1.									ovary(2)	2			GBM - Glioblastoma multiforme(4;1.93e-11)|LUSC - Lung squamous cell carcinoma(32;0.00654)			ATCTGGCCCCTTTTTCCAGTT	0.383													4	425					0	0	0.001168	0	0
UGT2B28	54490	broad.mit.edu	37	4	70152481	70152481	+	Silent	SNP	A	G	G	rs141618560		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:70152481A>G	uc003hej.2	+	3	884	c.882A>G	c.(880-882)GAA>GAG	p.E294E	UGT2B28_uc010ihr.2_Silent_p.E294E	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	294					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	AAATGGAGGAATTTGTACAGA	0.393													6	733					0	0	0.001984	0	0
PRDM8	56978	broad.mit.edu	37	4	81121424	81121424	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:81121424G>C	uc010ijo.2	+	6	1029	c.190G>C	c.(190-192)GAC>CAC	p.D64H	PRDM8_uc003hmb.3_Missense_Mutation_p.D64H|PRDM8_uc003hmc.3_Missense_Mutation_p.D64H	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	64	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CAAGTCTACTGACAAGAGAAC	0.433													5	690					0	0	0.003080	0	0
C4orf22	255119	broad.mit.edu	37	4	81791173	81791173	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:81791173T>A	uc003hmf.2	+	4	409	c.360T>A	c.(358-360)AAT>AAA	p.N120K	C4orf22_uc010ijp.2_Missense_Mutation_p.N137K	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	120										skin(2)	2						GTGACAGAAATTCTCATGGGC	0.363													52	277					0	0	0.003610	0	0
GRID2	2895	broad.mit.edu	37	4	94376877	94376877	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:94376877C>T	uc011cdt.1	+	11	1868	c.1610C>T	c.(1609-1611)ACG>ATG	p.T537M	GRID2_uc011cdu.1_Missense_Mutation_p.T442M	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	537	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GTGGACTTTACGACACGTTAC	0.433													5	452					0	0	0.000602	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948362	119948362	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:119948362G>A	uc003icm.3	+	3	1034	c.838G>A	c.(838-840)GGA>AGA	p.G280R	SYNPO2_uc010ina.2_Missense_Mutation_p.G280R|SYNPO2_uc010inb.2_Missense_Mutation_p.G280R|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.G208R	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	280						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AGGAGATGCGGGACTGCCCCG	0.537													4	217					0	0	0.000602	0	0
FAT4	79633	broad.mit.edu	37	4	126240745	126240745	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:126240745G>A	uc003ifj.3	+	1	3179	c.3179G>A	c.(3178-3180)CGT>CAT	p.R1060H		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1060	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.R1060S(1)		ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAACTGGACCGTGAACTTCAA	0.388													6	667					0	0	0.001984	0	0
FAT4	79633	broad.mit.edu	37	4	126372829	126372829	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:126372829C>T	uc003ifj.3	+	9	10658	c.10658C>T	c.(10657-10659)CCT>CTT	p.P3553L	FAT4_uc011cgp.1_Missense_Mutation_p.P1851L|FAT4_uc003ifi.1_Missense_Mutation_p.P1031L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3553	Cadherin 34.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGCACAGGTCCTGCCACCAGT	0.493													119	441					0	0	0.003610	0	0
SLC7A11	23657	broad.mit.edu	37	4	139106321	139106321	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:139106321G>A	uc011chb.1	-	7	1149	c.869C>T	c.(868-870)ACG>ATG	p.T290M		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	290	Extracellular (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	ATTAATGGTCGTAAAGTAGGC	0.433													5	533					0	0	0.001168	0	0
SLC7A11	23657	broad.mit.edu	37	4	139162999	139162999	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:139162999G>A	uc011chb.1	-	1	505	c.225C>T	c.(223-225)AGC>AGT	p.S75S		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	75	Helical; (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	ACATGCCCACGCTGCCCGTGT	0.547													4	213					0	0	0.000248	0	0
OTUD4	54726	broad.mit.edu	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:146059006G>A	uc003ika.3	-	21	2864	c.2726C>T	c.(2725-2727)ACT>ATT	p.T909I	OTUD4_uc003ijz.3_Missense_Mutation_p.T908I	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	973							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AACAGGCACAGTTTCTCTCTC	0.463													8	688					0	0	0.000673	0	0
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:146059041A>G	uc003ika.3	-	21	2829	c.2691T>C	c.(2689-2691)CAT>CAC	p.H897H	OTUD4_uc003ijz.3_Silent_p.H896H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	961							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GAGTGGGAGGATGAGCCTTTC	0.478													5	594					0	0	0.003080	0	0
CLCN3	1182	broad.mit.edu	37	4	170618563	170618563	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:170618563G>A	uc003isi.2	+	9	1750	c.1241G>A	c.(1240-1242)TGG>TAG	p.W414*	CLCN3_uc003ish.2_Nonsense_Mutation_p.W414*|CLCN3_uc011cjz.1_Nonsense_Mutation_p.W397*|CLCN3_uc011cka.1_Nonsense_Mutation_p.W387*|CLCN3_uc003isj.1_Nonsense_Mutation_p.W387*	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	414	Helical; (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		AATATTGCCTGGTGTCGTCGA	0.433													4	452					0	0	0.000602	0	0
FAM149A	25854	broad.mit.edu	37	4	187084035	187084035	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:187084035A>G	uc003iyt.3	+	9	1345	c.766A>G	c.(766-768)AAT>GAT	p.N256D	FAM149A_uc011cla.1_Missense_Mutation_p.N256D|FAM149A_uc003iyu.3_Missense_Mutation_p.N256D|FAM149A_uc010isl.2_Missense_Mutation_p.N256D|FAM149A_uc011clb.1_Missense_Mutation_p.N256D	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	547										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		TAGTGACATGAATGGTGTCAT	0.388													3	281					0	0	0.000248	0	0
CDH18	1016	broad.mit.edu	37	5	19721567	19721567	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:19721567C>A	uc003jgc.2	-	4	909	c.532G>T	c.(532-534)GTT>TTT	p.V178F	CDH18_uc003jgd.2_Missense_Mutation_p.V178F|CDH18_uc011cnm.1_Missense_Mutation_p.V178F	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	178	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					ACCTGTAGAACAGAGGTACCT	0.433													6	322					0.00307968	0.00399505	0.003080	1	0
NIPBL	25836	broad.mit.edu	37	5	37045632	37045632	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:37045632T>C	uc003jkl.3	+	37	6930	c.6431T>C	c.(6430-6432)CTT>CCT	p.L2144P	NIPBL_uc003jkk.3_Missense_Mutation_p.L2144P	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2144					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			CTTAGATCCCTTTTCACCGTT	0.348													5	827					0	0	0.000602	0	0
NNT	23530	broad.mit.edu	37	5	43645592	43645592	+	Missense_Mutation	SNP	C	T	T	rs141791856	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:43645592C>T	uc003joe.2	+	10	1679	c.1424C>T	c.(1423-1425)ACG>ATG	p.T475M	NNT_uc003jof.2_Missense_Mutation_p.T475M	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	475	Helical; (Potential).				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	ACAATGTCAACGGCTTCTGCA	0.368													4	501					0	0	0.003080	0	0
GZMA	3001	broad.mit.edu	37	5	54398541	54398541	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:54398541T>C	uc003jpm.2	+	1	68	c.31T>C	c.(31-33)TCT>CCT	p.S11P		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	11					cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				TCTGGCATCCTCTCTCTCAGT	0.403													3	237					0	0	0.000602	0	0
THBS4	7060	broad.mit.edu	37	5	79363797	79363797	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:79363797G>T	uc003kgh.2	+	11	1519	c.1196G>T	c.(1195-1197)GGA>GTA	p.G399V	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	399	EGF-like 3; calcium-binding (Potential).				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		TCCTTGCAGGGATCTTACCGC	0.473													5	234					0.00448238	0.00577107	0.004482	1	0
EDIL3	10085	broad.mit.edu	37	5	83433102	83433102	+	Silent	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:83433102G>T	uc003kio.1	-	5	845	c.426C>A	c.(424-426)TCC>TCA	p.S142S	EDIL3_uc003kip.1_Silent_p.S132S	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	142	EGF-like 3.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GGCACTCACAGGAATAGTTAG	0.299													5	525					0.000442599	0.000596698	0.006214	1	0
PCDHA1	56147	broad.mit.edu	37	5	140166148	140166148	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:140166148T>C	uc003lhb.2	+	1	273	c.273T>C	c.(271-273)GAT>GAC	p.D91D	PCDHA1_uc003lha.2_Silent_p.D91D|PCDHA1_uc003lgz.2_Silent_p.D91D	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	91	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCGGATCGATCGCGAGGAGC	0.567													7	559					0	0	0.000673	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149216575	149216575	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:149216575C>A	uc003lrc.2	+	8	2599	c.2557C>A	c.(2557-2559)CGC>AGC	p.R853S	PPARGC1B_uc003lrb.1_Missense_Mutation_p.R853S|PPARGC1B_uc003lrd.2_Missense_Mutation_p.R814S|PPARGC1B_uc003lrf.2_Missense_Mutation_p.R832S|PPARGC1B_uc003lre.1_Missense_Mutation_p.R832S	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	853					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TTCCCGCAGCCGCTCAAGCTC	0.592													5	437					0.00116845	0.00156299	0.001168	1	0
EBF1	1879	broad.mit.edu	37	5	158141175	158141175	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:158141175T>C	uc010jip.2	-	12	1443	c.1141A>G	c.(1141-1143)AGG>GGG	p.R381G	EBF1_uc011ddw.1_Missense_Mutation_p.R249G|EBF1_uc011ddx.1_Missense_Mutation_p.R382G|EBF1_uc003lxl.3_Missense_Mutation_p.R350G	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	381					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCGCAGCCCTTTTGAGTATT	0.478			T	HMGA2	lipoma								4	670					0	0	0.001984	0	0
HNRNPH1	3187	broad.mit.edu	37	5	179043901	179043901	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:179043901A>G	uc003mkf.3	-	11	1282	c.1176T>C	c.(1174-1176)TAT>TAC	p.Y392Y	HNRNPH1_uc011dgn.1_Intron|HNRNPH1_uc003mkg.3_Silent_p.Y300Y|HNRNPH1_uc003mke.3_Silent_p.Y392Y|HNRNPH1_uc003mkh.3_Silent_p.Y392Y	NM_005520	NP_005511	P31943	HNRH1_HUMAN	heterogeneous nuclear ribonucleoprotein H1	392	2 X 16 AA Gly-rich approximate repeats.|2 X 19 AA perfect repeats.|2-2.				regulation of RNA splicing	actin cytoskeleton|catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|poly(U) RNA binding|protein binding				0						TTTGGCTACCATAAGCACCAC	0.343													7	505					0	0	0.000978	0	0
BTN2A3	54718	broad.mit.edu	37	6	26422353	26422353	+	Missense_Mutation	SNP	C	T	T	rs141013110		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:26422353C>T	uc011dkl.1	+	1	37	c.7C>T	c.(7-9)CCA>TCA	p.P3S	BTN2A3_uc011dkm.1_RNA					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						GCTCATGGAACCAGCTGCTGC	0.622													25	541					0	0	0.006320	0	0
DDAH2	23564	broad.mit.edu	37	6	31696776	31696776	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:31696776G>A	uc003nwp.2	-	1	794	c.163C>T	c.(163-165)CGA>TGA	p.R55*	DDAH2_uc003nwq.2_Nonsense_Mutation_p.R55*	NM_013974	NP_039268	O95865	DDAH2_HUMAN	dimethylarginine dimethylaminohydrolase 2	55					anti-apoptosis|arginine catabolic process|citrulline metabolic process|nitric oxide biosynthetic process|nitric oxide mediated signal transduction	cytoplasm	dimethylargininase activity|protein binding				0					L-Citrulline(DB00155)	AGCCCCAGTCGTTGCCTCAGT	0.647													5	282					0	0	0.001984	0	0
TNXB	7148	broad.mit.edu	37	6	32023635	32023635	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:32023635A>G	uc003nzl.2	-	24	8662	c.8460T>C	c.(8458-8460)GGT>GGC	p.G2820G		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2878					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CACCTGTCACACCCACGGTGG	0.582													7	206					0	0	0.002450	0	0
NOTCH4	4855	broad.mit.edu	37	6	32180327	32180327	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:32180327G>A	uc003obb.2	-	17	2743	c.2604C>T	c.(2602-2604)TGC>TGT	p.C868C	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	868	EGF-like 22.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GGAGGCACAAGCAGTGGAAGG	0.622													4	459					0	0	0.001984	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333333	33333333	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:33333333G>A	uc003shx.2	-	1	807	c.673C>T	c.(673-675)CCT>TCT	p.P225S		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						AGTTAGACAGGAGGCAGCAGC	0.577													3	69					0	0	0.000248	0	0
FKBP5	2289	broad.mit.edu	37	6	35565146	35565146	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:35565146C>A	uc011dte.1	-	6	747	c.544G>T	c.(544-546)GAC>TAC	p.D182Y	FKBP5_uc003okx.2_Missense_Mutation_p.D182Y|FKBP5_uc011dtf.1_Missense_Mutation_p.D3Y|FKBP5_uc003oky.2_Missense_Mutation_p.D182Y|FKBP5_uc003okz.2_Missense_Mutation_p.D182Y	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	182	PPIase FKBP-type 2.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						TCTCTGCAGTCAAACATCCTT	0.507													5	344					0.00307968	0.00399505	0.003080	1	0
BRPF3	27154	broad.mit.edu	37	6	36182091	36182091	+	Missense_Mutation	SNP	C	T	T	rs148223802	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:36182091C>T	uc003olv.3	+	8	3141	c.2917C>T	c.(2917-2919)CGG>TGG	p.R973W	BRPF3_uc010jwb.2_Intron|BRPF3_uc011dtj.1_Intron|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Intron	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	973					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						GCGCCACTCCCGGAAGCGGCC	0.617													16	146					0	0	0.001523	0	0
PXT1	222659	broad.mit.edu	37	6	36368246	36368246	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:36368246A>G	uc003omd.1	-	1	66	c.36T>C	c.(34-36)CAT>CAC	p.H12H		NM_152990	NP_694535	Q8NFP0	PXT1_HUMAN	peroxisomal, testis specific 1	12						peroxisome					0						GAACCATCCTATGATCAATGT	0.507													141	402					0	0	0.003610	0	0
FRS3	10817	broad.mit.edu	37	6	41740563	41740563	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:41740563G>A	uc003orc.1	-	5	632	c.388C>T	c.(388-390)CTC>TTC	p.L130F		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	130					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GCTCGAGGGAGGTCAAGCTCA	0.463													4	294					0	0	0.001168	0	0
PAQR8	85315	broad.mit.edu	37	6	52268462	52268462	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:52268462G>A	uc003pao.3	+	2	625	c.451G>A	c.(451-453)GTG>ATG	p.V151M		NM_133367	NP_588608	Q8TEZ7	MPRB_HUMAN	progestin and adipoQ receptor family member	151	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding				0	Lung NSC(77;0.0875)					CTATGTTGGCGTGAGCGTTTA	0.527													5	424					0	0	0.000602	0	0
GCM1	8521	broad.mit.edu	37	6	52993190	52993190	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:52993190G>A	uc003pbp.2	-	6	1334	c.1125C>T	c.(1123-1125)TAC>TAT	p.Y375Y		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	375						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					GAGACTGGACGTAGCTGTTAA	0.483													6	557					0	0	0.001168	0	0
C6orf150	115004	broad.mit.edu	37	6	74135127	74135127	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:74135127A>G	uc003pgx.1	-	5	1531	c.1392T>C	c.(1390-1392)TTT>TTC	p.F464F		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	464											0						CGCAGTTATCAAAGCAGAGGC	0.398													3	137					0	0	0.004672	0	0
RIPPLY2	134701	broad.mit.edu	37	6	84567046	84567046	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:84567046A>G	uc003pke.2	+	4	476	c.325A>G	c.(325-327)ATT>GTT	p.I109V	CYB5R4_uc003pkf.2_5'Flank	NM_001009994	NP_001009994	Q5TAB7	RIPP2_HUMAN	ripply2 protein	109	Ripply homology domain.				somite rostral/caudal axis specification	nucleus					0						TCAAGCCACAATTTCATTTTA	0.323													3	281					0	0	0.000248	0	0
MDN1	23195	broad.mit.edu	37	6	90353770	90353770	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:90353770G>A	uc003pnn.1	-	102	16861	c.16745C>T	c.(16744-16746)GCC>GTC	p.A5582V		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	5582	VWFA.				protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CTGTCTGAGGGCATCGCTGAG	0.473													4	322					0	0	0.000602	0	0
LRP11	84918	broad.mit.edu	37	6	150164252	150164252	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:150164252T>C	uc003qng.2	-	3	1104	c.780A>G	c.(778-780)CAA>CAG	p.Q260Q	LRP11_uc003qnh.1_Silent_p.Q260Q	NM_032832	NP_116221	Q86VZ4	LRP11_HUMAN	low density lipoprotein receptor-related protein	260	PKD.|Extracellular (Potential).					integral to membrane	receptor activity				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;4.56e-12)|GBM - Glioblastoma multiforme(68;0.225)		GGGTTCCTGATTGAGGCACCT	0.577													26	215					0	0	0.001786	0	0
LPA	4018	broad.mit.edu	37	6	161026093	161026093	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:161026093G>T	uc003qtl.2	-	19	3050	c.2930C>A	c.(2929-2931)GCA>GAA	p.A977E		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3485	Kringle 31.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGGGTAGTATGCTGGGGTCCG	0.438													8	881					0.000978159	0.00131185	0.000978	1	0
LPA	4018	broad.mit.edu	37	6	161071369	161071369	+	Splice_Site	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:161071369C>T	uc003qtl.2	-	3	329	c.209_splice	c.e3+1	p.A70_splice		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor						blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TAATGACATACGCATTTGGGT	0.403													6	681					0	0	0.001984	0	0
KIF25	3834	broad.mit.edu	37	6	168430272	168430272	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:168430272T>A	uc003qwk.1	+	2	269	c.7T>A	c.(7-9)TGG>AGG	p.W3R	KIF25_uc010kkt.1_RNA|KIF25_uc003qwl.1_Missense_Mutation_p.W3R	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	3	Kinesin-motor.				microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity	p.W3C(1)		ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CCAGATGACATGGACCTCAGG	0.602													6	385					0	0	0.001984	0	0
DAGLB	221955	broad.mit.edu	37	7	6465643	6465643	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:6465643G>A	uc003sqa.2	-	7	1202	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F	DAGLB_uc011jwt.1_Silent_p.F158F|DAGLB_uc011jwu.1_Silent_p.F215F|DAGLB_uc003sqb.2_Silent_p.F63F|DAGLB_uc003sqc.2_Silent_p.F63F|DAGLB_uc011jwv.1_RNA|DAGLB_uc003sqd.3_Silent_p.F303F|DAGLB_uc011jww.1_RNA	NM_139179	NP_631918	Q8NCG7	DGLB_HUMAN	diacylglycerol lipase, beta isoform 1	344	Cytoplasmic (Potential).				lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.102)		TGACGTGGATGAAGTCCCTGT	0.393													42	216					0	0	0.001951	0	0
WIPF3	644150	broad.mit.edu	37	7	29943905	29943905	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:29943905G>A	uc003taj.1	+	7	1355	c.1355G>A	c.(1354-1356)CGT>CAT	p.R452H		NM_001080529	NP_001073998	A6NGB9	WIPF3_HUMAN	WAS/WASL interacting protein family, member 3	452										ovary(1)	1						CCTTCAGGCCGTACACCTGGT	0.468													4	487					0	0	0.000248	0	0
AQP1	358	broad.mit.edu	37	7	30951843	30951843	+	Missense_Mutation	SNP	G	A	A	rs35804488	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:30951843G>A	uc003tbv.1	+	1	376	c.319G>A	c.(319-321)GTC>ATC	p.V107I	AQP1_uc011kac.1_Missense_Mutation_p.V167I	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	107	Helical; Name=Helix 3.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	GGGGGCCATCGTCGCCACCGC	0.637													10	657					0	0	0.000978	0	0
AEBP1	165	broad.mit.edu	37	7	44146353	44146353	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:44146353A>G	uc003tkb.2	+	2	767	c.462A>G	c.(460-462)AAA>AAG	p.K154K		NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	154	Pro-rich.				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGAAGCCCAAAGAGAAGCCAC	0.627													4	101					0	0	0.000248	0	0
AEBP1	165	broad.mit.edu	37	7	44146365	44146365	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:44146365C>T	uc003tkb.2	+	2	779	c.474C>T	c.(472-474)CCC>CCT	p.P158P		NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	158	Pro-rich.				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGAAGCCACCCAAGGCCACCA	0.647													4	83					0	0	0.000248	0	0
ZNF479	90827	broad.mit.edu	37	7	57187725	57187725	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:57187725G>T	uc010kzo.2	-	5	1668	c.1397C>A	c.(1396-1398)ACA>AAA	p.T466K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	466	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATGTGTAGGGTCT	0.428													8	606					2.31682e-05	3.22477e-05	0.003163	1	0
ZNF727	442319	broad.mit.edu	37	7	63538609	63538609	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:63538609A>G	uc011kdm.1	+	4	1361	c.1182A>G	c.(1180-1182)AAA>AAG	p.K394K		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	394					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTGGAGAGAAACCCTACAAAT	0.373													4	103					0	0	0.000602	0	0
ZNF727	442319	broad.mit.edu	37	7	63538638	63538638	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:63538638G>C	uc011kdm.1	+	4	1390	c.1211G>C	c.(1210-1212)AGC>ACC	p.S404T		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	404	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGTGGCAAAAGCTTTACCTGC	0.388													3	100					0	0	0.000248	0	0
ZNF92	168374	broad.mit.edu	37	7	64863705	64863705	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:64863705A>G	uc003ttz.2	+	4	821	c.678A>G	c.(676-678)GAA>GAG	p.E226E	ZNF92_uc003tua.2_Silent_p.E157E|ZNF92_uc010kzu.2_Silent_p.E194E|ZNF92_uc003tub.2_Silent_p.E150E	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	226						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				ATACTGGAGAAAAACCCTACA	0.338													3	346					0	0	0.003080	0	0
ZNF92	168374	broad.mit.edu	37	7	64863789	64863789	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:64863789G>A	uc003ttz.2	+	4	905	c.762G>A	c.(760-762)GAG>GAA	p.E254E	ZNF92_uc003tua.2_Silent_p.E185E|ZNF92_uc010kzu.2_Silent_p.E222E|ZNF92_uc003tub.2_Silent_p.E178E	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	254						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				ATACTGGAGAGAAACCCTACA	0.353													7	423					0	0	0.001855	0	0
RFC2	5982	broad.mit.edu	37	7	73654412	73654412	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:73654412G>A	uc003uaj.2	-	7	574	c.549C>T	c.(547-549)TCC>TCT	p.S183S	RFC2_uc011kfa.1_RNA|RFC2_uc003uak.2_Silent_p.S149S|RFC2_uc010lbp.2_Silent_p.S112S|RFC2_uc003ual.2_Silent_p.S82S	NM_181471	NP_852136	P35250	RFC2_HUMAN	replication factor C 2 isoform 1	183					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			liver(1)|central_nervous_system(1)	2						CTGCACAGCGGGACTGAATGG	0.567													4	251					0	0	0.004482	0	0
STEAP2	261729	broad.mit.edu	37	7	89854707	89854707	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:89854707T>C	uc003ujz.2	+	2	704	c.311T>C	c.(310-312)CTG>CCG	p.L104P	STEAP2_uc003ujy.2_Missense_Mutation_p.L146P|STEAP2_uc010len.2_Missense_Mutation_p.L104P|STEAP2_uc003uka.2_Missense_Mutation_p.L104P|STEAP2_uc003ukb.2_Missense_Mutation_p.L104P|STEAP2_uc003ukc.2_Missense_Mutation_p.L104P|STEAP2_uc003ukd.2_Missense_Mutation_p.L104P	NM_152999	NP_694544	Q8NFT2	STEA2_HUMAN	six transmembrane epithelial antigen of the	104					electron transport chain|endocytosis|Golgi to plasma membrane transport|ion transport|iron ion homeostasis|regulated secretory pathway|response to hormone stimulus	cytosol|early endosome|endosome membrane|integral to Golgi membrane|plasma membrane|trans-Golgi network transport vesicle|vesicular fraction	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity|transporter activity			ovary(2)	2	all_hematologic(106;0.112)					CTGTGGGACCTGAGACATCTG	0.388													4	686					0	0	0.000602	0	0
GNB2	2783	broad.mit.edu	37	7	100275813	100275813	+	Missense_Mutation	SNP	G	A	A	rs139214321		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:100275813G>A	uc003uwb.2	+	8	863	c.590G>A	c.(589-591)CGC>CAC	p.R197H	GNB2_uc003uwc.2_Missense_Mutation_p.R153H|GNB2_uc010lhd.2_Missense_Mutation_p.R153H|GNB2_uc010lhe.2_Missense_Mutation_p.R153H|GNB2_uc003uwd.2_Missense_Mutation_p.R97H|GNB2_uc010lhf.2_Missense_Mutation_p.R97H|GNB2_uc003uwe.2_Missense_Mutation_p.R197H|GNB2_uc003uwf.2_Missense_Mutation_p.R97H	NM_005273	NP_005264	P62879	GBB2_HUMAN	guanine nucleotide-binding protein, beta-2	197	WD 4.				cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	perinuclear region of cytoplasm|plasma membrane	GTPase activity|GTPase binding|signal transducer activity			ovary(2)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)	Ovarian(593;0.238)				CCCGATGGCCGCACGTTTGTG	0.587													6	548					0	0	0.003080	0	0
EPO	2056	broad.mit.edu	37	7	100320671	100320671	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:100320671G>A	uc003uwi.2	+	5	678	c.497G>A	c.(496-498)CGC>CAC	p.R166H	EPO_uc011kkc.1_Missense_Mutation_p.R165H	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	166					blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	GACACTTTCCGCAAACTCTTC	0.572													5	666					0	0	0.001168	0	0
ZAN	7455	broad.mit.edu	37	7	100349878	100349878	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:100349878C>T	uc003uwj.2	+	14	2315	c.2150C>T	c.(2149-2151)CCC>CTC	p.P717L	ZAN_uc003uwk.2_Missense_Mutation_p.P717L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	717	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCAGAAAAACCCACCATCCCC	0.507													7	292					0	0	0.004482	0	0
MUC17	140453	broad.mit.edu	37	7	100684253	100684253	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:100684253G>A	uc003uxp.1	+	3	9609	c.9556G>A	c.(9556-9558)GCA>ACA	p.A3186T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3186	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|51.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACCCTTTCAGCAACTCCTGT	0.483													7	891					0	0	0.001882	0	0
ORC5L	5001	broad.mit.edu	37	7	103835614	103835614	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:103835614A>G	uc003vcb.2	-	5	641	c.530T>C	c.(529-531)TTA>TCA	p.L177S	ORC5L_uc011klp.1_Missense_Mutation_p.L45S|ORC5L_uc003vcc.2_Missense_Mutation_p.L177S|ORC5L_uc003vcd.2_Missense_Mutation_p.L177S	NM_002553	NP_002544	O43913	ORC5_HUMAN	origin recognition complex subunit 5 isoform 1	177					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	cytoplasm|nuclear origin of replication recognition complex|nucleoplasm	ATP binding|DNA replication origin binding|identical protein binding				0						AGGGAAATATAAGACAAACGG	0.343													3	370					0	0	0.000248	0	0
DOCK4	9732	broad.mit.edu	37	7	111381222	111381222	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:111381222G>A	uc003vfx.2	-	46	5210	c.4941C>T	c.(4939-4941)TCC>TCT	p.S1647S	DOCK4_uc011kml.1_Silent_p.S528S|DOCK4_uc011kmm.1_Silent_p.S554S|DOCK4_uc003vfw.2_Silent_p.S1097S|DOCK4_uc003vfy.2_Silent_p.S1692S|DOCK4_uc003vfv.2_5'Flank	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1647	Ser-rich.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				AAGCTTGTGAGGACAGTGAGG	0.408													6	850					0	0	0.003080	0	0
DOCK4	9732	broad.mit.edu	37	7	111503593	111503593	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:111503593C>T	uc003vfx.2	-	23	2577	c.2308G>A	c.(2308-2310)GTG>ATG	p.V770M	DOCK4_uc003vfw.2_Missense_Mutation_p.V211M|DOCK4_uc003vfy.2_Missense_Mutation_p.V770M|DOCK4_uc003vga.1_Missense_Mutation_p.V375M	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	770					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TCTGAGTACACGGCAGGGAAA	0.478													7	66					0	0	0.003080	0	0
FOXP2	93986	broad.mit.edu	37	7	114270000	114270000	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:114270000G>A	uc003vhb.2	+	5	911	c.537G>A	c.(535-537)CAG>CAA	p.Q179Q	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.Q204Q|FOXP2_uc003vha.2_Silent_p.Q87Q|FOXP2_uc011kmu.1_Silent_p.Q196Q|FOXP2_uc011kmv.1_Silent_p.Q179Q|FOXP2_uc010ljz.1_Silent_p.Q87Q|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_Silent_p.Q179Q|FOXP2_uc003vgx.2_Silent_p.Q179Q|FOXP2_uc003vhd.2_Silent_p.Q179Q|FOXP2_uc003vhc.2_Silent_p.Q204Q	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	179	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						agcaacaacagcagcagcagc	0.159													4	147					0	0	0.001168	0	0
CFTR	1080	broad.mit.edu	37	7	117250657	117250657	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:117250657G>A	uc003vjd.2	+	19	3205	c.3073G>A	c.(3073-3075)GCT>ACT	p.A1025T	CFTR_uc011knq.1_Missense_Mutation_p.A431T	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1025	Helical; Name=10; (Potential).|ABC transmembrane type-1 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AGTGATAGTGGCTTTTATTAT	0.383									Cystic_Fibrosis				30	219					0	0	0.007291	0	0
WASL	8976	broad.mit.edu	37	7	123349222	123349222	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:123349222G>A	uc003vkz.2	-	2	501	c.173C>T	c.(172-174)TCA>TTA	p.S58L		NM_003941	NP_003932	O00401	WASL_HUMAN	Wiskott-Aldrich syndrome gene-like protein	58	WH1.				actin polymerization or depolymerization|axon guidance|cellular component movement|nitric oxide metabolic process|protein complex assembly|regulation of nitric-oxide synthase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|cytosol|nucleolus|plasma membrane	actin binding|small GTPase regulator activity				0						GCACTTCTTTGACCACATACA	0.338													28	293					0	0	0.003271	0	0
FAM71F2	346653	broad.mit.edu	37	7	128323056	128323056	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:128323056G>A	uc003vnk.3	+	5	879	c.773G>A	c.(772-774)AGC>AAC	p.S258N	FAM71F2_uc010llm.1_Missense_Mutation_p.S249N|FAM71F2_uc003vnl.2_RNA|FAM71F2_uc010lln.1_RNA	NM_001012454	NP_001012457	Q6NXP2	F71F2_HUMAN	hypothetical protein LOC346653 isoform a	258											0						AACTGCAGCAGCTACAAGATA	0.443													3	75					0	0	0.000602	0	0
TSPAN33	340348	broad.mit.edu	37	7	128802692	128802692	+	Missense_Mutation	SNP	G	A	A	rs142211237		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:128802692G>A	uc003vop.1	+	4	536	c.307G>A	c.(307-309)GCT>ACT	p.A103T		NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	tetraspanin 33	103	Helical; (Potential).					integral to membrane				ovary(1)	1						CTGCCTCACCGCTGTGTTCCT	0.622													5	750					0	0	0.001168	0	0
SGK223	157285	broad.mit.edu	37	8	8176009	8176009	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:8176009G>A	uc003wsh.3	-	5	3876	c.3876C>T	c.(3874-3876)TAC>TAT	p.Y1292Y		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1292	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GGCCGGGTGAGTAGAGGGACA	0.682													3	77					0	0	0.004672	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19363332	19363332	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:19363332C>T	uc011kyn.1	-	4	1078	c.14G>A	c.(13-15)CGC>CAC	p.R5H	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.R5H|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.R4H|CSGALNACT1_uc003wzh.2_RNA	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	5	Cytoplasmic (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		CAGCCCCCGGCGAACCATCAT	0.602													30	291					0	0	0.002445	0	0
NCOA2	10499	broad.mit.edu	37	8	71071821	71071821	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:71071821G>A	uc003xyn.1	-	10	1205	c.1043C>T	c.(1042-1044)GCT>GTT	p.A348V		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	348					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			CGTTTGTGCAGCAACAAGAGT	0.408			T	RUNXBP2	AML								5	479					0	0	0.001984	0	0
VPS13B	157680	broad.mit.edu	37	8	100791108	100791108	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:100791108T>C	uc003yiv.2	+	42	7814	c.7703T>C	c.(7702-7704)GTG>GCG	p.V2568A	VPS13B_uc003yiw.2_Missense_Mutation_p.V2543A	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2568					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CAAAGTGTGGTGAAACCCTTC	0.448													9	431					0	0	0.000978	0	0
VPS13B	157680	broad.mit.edu	37	8	100866270	100866270	+	Silent	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:100866270C>A	uc003yiv.2	+	56	10839	c.10728C>A	c.(10726-10728)GCC>GCA	p.A3576A	VPS13B_uc003yiw.2_Silent_p.A3551A	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3576					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CACAGCACGCCAGGGCCTTGG	0.537													5	419					0.00307968	0.00399505	0.003080	1	0
TM7SF4	81501	broad.mit.edu	37	8	105360959	105360959	+	Missense_Mutation	SNP	C	T	T	rs138578884		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:105360959C>T	uc003ylx.1	+	2	228	c.179C>T	c.(178-180)GCG>GTG	p.A60V		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	60	Helical; (Potential).|Poly-Ala.				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TCAATCATAGCGGCCGCTGCC	0.498													157	361					0	0	0.003610	0	0
SYBU	55638	broad.mit.edu	37	8	110655051	110655051	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:110655051A>G	uc003ynj.3	-	2	298	c.135T>C	c.(133-135)TCT>TCC	p.S45S	SYBU_uc003yni.3_Silent_p.S42S|SYBU_uc003ynk.3_Intron|SYBU_uc010mco.2_Silent_p.S44S|SYBU_uc003ynl.3_Silent_p.S44S|SYBU_uc010mcp.2_Silent_p.S45S|SYBU_uc010mcq.2_Silent_p.S45S|SYBU_uc003yno.3_Intron|SYBU_uc010mcr.2_Silent_p.S45S|SYBU_uc003ynm.3_Silent_p.S44S|SYBU_uc003ynn.3_Silent_p.S44S|SYBU_uc010mcs.2_Intron|SYBU_uc010mct.2_Silent_p.S45S|SYBU_uc010mcu.2_Silent_p.S44S|SYBU_uc003ynp.3_Intron|SYBU_uc010mcv.2_Silent_p.S45S|uc003ynq.1_5'Flank	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	45	Sufficient for interaction with KIF5B.|Ser-rich.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						AAGGAGACTCAGAGGCTGGGG	0.552													4	489					0	0	0.001168	0	0
ZNF34	80778	broad.mit.edu	37	8	145998756	145998756	+	Silent	SNP	G	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:145998756G>T	uc003zdy.3	-	6	1680	c.1578C>A	c.(1576-1578)ACC>ACA	p.T526T	ZNF34_uc010mgb.2_Silent_p.T423T|ZNF34_uc003zdx.3_Silent_p.T505T	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	526					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		GCTTCTCCCCGGTGTGGATCC	0.572													5	643					2.17888e-05	3.04098e-05	0.006214	1	0
ZNF517	340385	broad.mit.edu	37	8	146032966	146032966	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:146032966G>A	uc003zed.1	+	5	772	c.665G>A	c.(664-666)CGG>CAG	p.R222Q	ZNF517_uc010mgd.1_Missense_Mutation_p.R128Q|ZNF517_uc003zee.1_RNA|ZNF517_uc011llm.1_Missense_Mutation_p.R128Q|ZNF517_uc003zef.1_Intron	NM_213605	NP_998770	Q6ZMY9	ZN517_HUMAN	zinc finger protein 517	222	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;5.47e-39)|OV - Ovarian serous cystadenocarcinoma(54;6.38e-39)|all cancers(56;5.47e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)			ATCCTGCTGCGGCACCAGCTG	0.642													10	49					0	0	0.000673	0	0
PSIP1	11168	broad.mit.edu	37	9	15474206	15474206	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:15474206T>C	uc003zlv.3	-	9	989	c.659A>G	c.(658-660)AAG>AGG	p.K220R	PSIP1_uc003zlw.3_Missense_Mutation_p.K220R|PSIP1_uc003zlz.3_Missense_Mutation_p.K220R|PSIP1_uc003zma.3_Missense_Mutation_p.K211R|PSIP1_uc003zly.2_Missense_Mutation_p.K220R	NM_033222	NP_150091	O75475	PSIP1_HUMAN	PC4 and SFRS1 interacting protein 1 isoform 2	220					initiation of viral infection|interspecies interaction between organisms|nuclear mRNA 5'-splice site recognition|provirus integration|regulation of transcription, DNA-dependent|response to heat|response to oxidative stress|transcription, DNA-dependent	cytosol|nuclear heterochromatin|nuclear periphery|nucleoplasm|nucleoplasm|transcriptionally active chromatin	activating transcription factor binding|chromatin binding|DNA secondary structure binding|RNA polymerase II transcription coactivator activity			breast(1)	1				GBM - Glioblastoma multiforme(50;2.38e-06)		CTCTTGCCCCTTTTTCTTACT	0.358													8	794					0	0	0.003080	0	0
BNC2	54796	broad.mit.edu	37	9	16436586	16436586	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:16436586G>A	uc003zml.2	-	6	1746	c.1606C>T	c.(1606-1608)CGA>TGA	p.R536*	BNC2_uc011lmw.1_Nonsense_Mutation_p.R441*|BNC2_uc003zmm.2_Nonsense_Mutation_p.R494*|BNC2_uc003zmq.1_Nonsense_Mutation_p.R550*|BNC2_uc003zmr.1_Nonsense_Mutation_p.R573*|BNC2_uc003zmp.1_Nonsense_Mutation_p.R564*|BNC2_uc010mij.1_Nonsense_Mutation_p.R458*|BNC2_uc011lmv.1_Nonsense_Mutation_p.R362*|BNC2_uc003zmo.1_Nonsense_Mutation_p.R458*|BNC2_uc003zmj.2_Nonsense_Mutation_p.R301*|BNC2_uc003zmk.2_RNA|BNC2_uc003zmi.2_Nonsense_Mutation_p.R301*|BNC2_uc003zmn.1_Nonsense_Mutation_p.R301*	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	536	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		ATTGGGGGTCGGCCAGGGCTT	0.493													4	508					0	0	0.000602	0	0
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:20414379G>A	uc003zoe.2	-	5	724	c.465C>T	c.(463-465)AGC>AGT	p.S155S	MLLT3_uc011lne.1_Silent_p.S123S|MLLT3_uc011lnf.1_Silent_p.S152S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Silent_p.S123S	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	155	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.149			T	MLL	ALL								4	81					0	0	0.000248	0	0
KLHL9	55958	broad.mit.edu	37	9	21333273	21333273	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:21333273G>A	uc003zoy.2	-	1	2157	c.1586C>T	c.(1585-1587)GCC>GTC	p.A529V	KLHL9_uc003zow.2_Intron|KLHL9_uc003zox.2_RNA	NM_018847	NP_061335	Q9P2J3	KLHL9_HUMAN	kelch-like 9	529	Kelch 5.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|midbody				ovary(3)|skin(1)	4				Lung(24;8.52e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.118)		TAACATGGCGGCAATTGGGGT	0.403													5	763					0	0	0.003080	0	0
ACO1	48	broad.mit.edu	37	9	32424635	32424635	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:32424635A>G	uc003zqw.3	+	10	1315	c.1160A>G	c.(1159-1161)AAG>AGG	p.K387R	ACO1_uc010mjh.1_Missense_Mutation_p.K221R|ACO1_uc003zqx.3_Missense_Mutation_p.K387R|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	387					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		GACATGAAAAAGGACTTTGAG	0.507													3	389					0	0	0.000602	0	0
CBWD3	445571	broad.mit.edu	37	9	70871889	70871889	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:70871889C>T	uc004agi.3	+	5	592	c.483C>T	c.(481-483)TAC>TAT	p.Y161Y	CBWD3_uc011lro.1_Intron|CBWD3_uc004agj.3_Intron|CBWD3_uc011lrp.1_Intron|CBWD3_uc004agl.3_Silent_p.Y13Y	NM_201453	NP_958861	Q5JTY5	CBWD3_HUMAN	COBW domain containing 3	161							ATP binding				0				all cancers(8;0.00136)|Epithelial(8;0.0288)|GBM - Glioblastoma multiforme(74;0.0402)|OV - Ovarian serous cystadenocarcinoma(323;0.18)		GTGATATTTACCTTGATGGTA	0.209													5	535					0	0	0.001168	0	0
TRPM3	80036	broad.mit.edu	37	9	73213484	73213484	+	Nonsense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:73213484C>A	uc004aid.2	-	20	3107	c.2863G>T	c.(2863-2865)GGA>TGA	p.G955*	TRPM3_uc004ahu.2_Nonsense_Mutation_p.G785*|TRPM3_uc004ahv.2_Nonsense_Mutation_p.G757*|TRPM3_uc004ahw.2_Nonsense_Mutation_p.G827*|TRPM3_uc004ahx.2_Nonsense_Mutation_p.G814*|TRPM3_uc004ahy.2_Nonsense_Mutation_p.G817*|TRPM3_uc004ahz.2_Nonsense_Mutation_p.G804*|TRPM3_uc004aia.2_Nonsense_Mutation_p.G802*|TRPM3_uc004aib.2_Nonsense_Mutation_p.G792*|TRPM3_uc004aic.2_Nonsense_Mutation_p.G955*	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	980	Helical; (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						AGGATCATTCCGACAGAAAAC	0.498													8	460					2.17888e-05	3.04098e-05	0.006214	1	0
ZNF462	58499	broad.mit.edu	37	9	109692921	109692921	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:109692921G>A	uc004bcz.2	+	4	6252	c.5963G>A	c.(5962-5964)CGA>CAA	p.R1988Q	ZNF462_uc010mto.2_Missense_Mutation_p.R1836Q|ZNF462_uc004bda.2_Missense_Mutation_p.R1836Q|ZNF462_uc011lvz.1_5'Flank	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1988	C2H2-type 18; degenerate.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						AATCACCTCCGAAAGCACGTC	0.512													4	238					0	0	0.000248	0	0
SVEP1	79987	broad.mit.edu	37	9	113205879	113205879	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:113205879C>A	uc010mtz.2	-	27	4922	c.4585G>T	c.(4585-4587)GAT>TAT	p.D1529Y	SVEP1_uc010mua.1_Missense_Mutation_p.D1529Y	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1529	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AATTTCCCATCGATATAGACT	0.438													17	110					1.40151e-16	2.0447e-16	0.001523	1	0
DENND1A	57706	broad.mit.edu	37	9	126220150	126220150	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:126220150T>C	uc004bnz.1	-	14	1253	c.1020A>G	c.(1018-1020)GAA>GAG	p.E340E	DENND1A_uc011lzl.1_Silent_p.E115E|DENND1A_uc004bny.1_Intron|DENND1A_uc011lzm.1_Silent_p.E308E|DENND1A_uc004boa.1_Silent_p.E340E|DENND1A_uc004bob.1_Silent_p.E310E|DENND1A_uc004boc.2_Silent_p.E308E	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	340	dDENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						ACACGAAGGCTTCCTCACAGA	0.582													3	111					0	0	0.000248	0	0
ZNF79	7633	broad.mit.edu	37	9	130207131	130207131	+	Silent	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:130207131T>C	uc004bqw.3	+	5	1566	c.1152T>C	c.(1150-1152)ACT>ACC	p.T384T	ZNF79_uc011maf.1_Silent_p.T360T|ZNF79_uc011mag.1_Silent_p.T360T	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	384					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						GGACTCACACTGGGGAGAAAC	0.547													8	342					0	0	0.004990	0	0
ZNF79	7633	broad.mit.edu	37	9	130207140	130207140	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:130207140A>G	uc004bqw.3	+	5	1575	c.1161A>G	c.(1159-1161)AAA>AAG	p.K387K	ZNF79_uc011maf.1_Silent_p.K363K|ZNF79_uc011mag.1_Silent_p.K363K	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	387					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						CTGGGGAGAAACCCTACAAGT	0.532													8	336					0	0	0.004007	0	0
SETX	23064	broad.mit.edu	37	9	135202060	135202060	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:135202060G>A	uc004cbk.2	-	10	5108	c.4925C>T	c.(4924-4926)CCC>CTC	p.P1642L	SETX_uc004cbj.2_Missense_Mutation_p.P1261L|SETX_uc010mzt.2_Missense_Mutation_p.P1261L	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	1642					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		AGCTATGAGGGGAACTGGCTG	0.418													4	455					0	0	0.000602	0	0
DDX53	168400	broad.mit.edu	37	X	23018390	23018390	+	Silent	SNP	A	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:23018390A>G	uc004daj.2	+	1	304	c.216A>G	c.(214-216)AAA>AAG	p.K72K		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	72	KH.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						CAAAAATAAAAGATCTACAAC	0.403													3	143					0	0	0.000602	0	0
FAM47C	442444	broad.mit.edu	37	X	37027200	37027200	+	Silent	SNP	A	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:37027200A>C	uc004ddl.1	+	1	731	c.717A>C	c.(715-717)CCA>CCC	p.P239P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	239										ovary(3)	3						TGGAGCCTCCAGAGACTGGAG	0.637													4	142					0	0	0.000602	0	0
PAGE1	8712	broad.mit.edu	37	X	49454025	49454025	+	Silent	SNP	C	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:49454025C>T	uc004dom.2	-	5	547	c.414G>A	c.(412-414)GAG>GAA	p.E138E		NM_003785	NP_003776	O75459	GAGB1_HUMAN	P antigen family, member 1	138					cellular defense response					skin(1)	1	Ovarian(276;0.236)					GCCTACCTTCCTCAGGTGTTT	0.418													5	498					0	0	0.001984	0	0
SHROOM4	57477	broad.mit.edu	37	X	50378023	50378023	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:50378023G>A	uc004dpe.2	-	4	1076	c.1050C>T	c.(1048-1050)TCC>TCT	p.S350S	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Silent_p.S234S	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	350					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					CCTGTTGGCTGGATTCAGGAG	0.537													3	116					0	0	0.000602	0	0
UBQLN2	29978	broad.mit.edu	37	X	56590932	56590932	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:56590932C>G	uc004dus.2	+	1	861	c.626C>G	c.(625-627)CCA>CGA	p.P209R	UBQLN2_uc011moq.1_Missense_Mutation_p.P209R	NM_013444	NP_038472	Q9UHD9	UBQL2_HUMAN	ubiquilin 2	209						cytoplasm|nucleus|plasma membrane	binding			ovary(1)|skin(1)	2						ATGGCTAATCCACAGATGCAG	0.463													21	114					0	0	0.003330	0	0
HEPH	9843	broad.mit.edu	37	X	65415012	65415012	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:65415012G>A	uc011moz.1	+	9	1511	c.1451G>A	c.(1450-1452)AGC>AAC	p.S484N	HEPH_uc004dwn.2_Missense_Mutation_p.S484N|HEPH_uc004dwo.2_Missense_Mutation_p.S214N|HEPH_uc010nkr.2_Missense_Mutation_p.S484N|HEPH_uc011mpa.1_Missense_Mutation_p.S484N	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	481	Extracellular (Potential).|Plastocyanin-like 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CAGCCATTCAGCATGCAGCCC	0.522													4	91					0	0	0.000248	0	0
ATRX	546	broad.mit.edu	37	X	76855029	76855029	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:76855029T>C	uc004ecp.3	-	25	6039	c.5807A>G	c.(5806-5808)AAG>AGG	p.K1936R	ATRX_uc004ecq.3_Missense_Mutation_p.K1898R|ATRX_uc004eco.3_Missense_Mutation_p.K1721R	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1936	Poly-Lys.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTTTTTCCCCTTTTTCCCTTT	0.318			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						4	573					0	0	0.000602	0	0
LOC442459	442459	broad.mit.edu	37	X	98974894	98974894	+	RNA	SNP	T	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:98974894T>A	uc011mrd.1	-	8		c.1449A>T				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						GTCACCTGAATTTTCTGGTCA	0.478													30	54					0	0	0.002096	0	0
GUCY2F	2986	broad.mit.edu	37	X	108718972	108718972	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:108718972G>A	uc004eod.3	-	2	470	c.194C>T	c.(193-195)TCG>TTG	p.S65L	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	65	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TGAAAACAGCGAATCACAAGC	0.532											OREG0019905	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	127					0	0	0.000248	0	0
SLC9A6	10479	broad.mit.edu	37	X	135126803	135126803	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:135126803G>A	uc004ezj.2	+	16	2006	c.1930G>A	c.(1930-1932)GGA>AGA	p.G644R	SLC9A6_uc004ezk.2_Missense_Mutation_p.G676R	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	644					regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GGTCATTCGAGGAACACGCCT	0.483													4	197					0	0	0.001168	0	0
FGF13	2258	broad.mit.edu	37	X	137715089	137715089	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:137715089G>A	uc004fam.2	-	5	1322	c.660C>T	c.(658-660)AGC>AGT	p.S220S	FGF13_uc004fan.2_Silent_p.S167S|FGF13_uc011mwi.1_Silent_p.S201S|FGF13_uc004faq.2_Silent_p.S230S|FGF13_uc004far.2_Silent_p.S201S|FGF13_uc011mwj.1_Silent_p.S230S|FGF13_uc011mwk.1_Silent_p.S174S	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	220					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TTGGGGTCCCGCTTCCAGATC	0.527													5	219					0	0	0.000602	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993455	140993455	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:140993455G>A	uc004fbt.2	+	4	551	c.265G>A	c.(265-267)GGC>AGC	p.G89S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	89							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTCTCCTGAGGGCGACGACAC	0.582										HNSCC(15;0.026)			4	293					0	0	0.001168	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994960	140994960	+	Silent	SNP	G	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:140994960G>A	uc004fbt.2	+	4	2056	c.1770G>A	c.(1768-1770)CTG>CTA	p.L590L	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	590							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGGACTCCCTGTCTCCTCACT	0.567										HNSCC(15;0.026)			6	851					0	0	0.001984	0	0
AVPR2	554	broad.mit.edu	37	X	153171366	153171366	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:153171366G>C	uc004fjh.3	+	2	477	c.406G>C	c.(406-408)GAC>CAC	p.D136H	AVPR2_uc004fjg.3_Intron|AVPR2_uc004fji.2_Missense_Mutation_p.D136H	NM_000054	NP_000045	P30518	V2R_HUMAN	arginine vasopressin receptor 2 isoform 1	136	Cytoplasmic (Potential).				activation of adenylate cyclase activity|excretion|G-protein signaling, coupled to cAMP nucleotide second messenger|hemostasis|positive regulation of gene expression|transmembrane transport|water transport	endoplasmic reticulum|endosome|Golgi apparatus|integral to plasma membrane	vasopressin receptor activity			breast(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067)	CATGACGCTGGACCGCCACCG	0.642													3	211					0	0	0.000248	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6536011	6536013	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:6536011_6536013delCTC	uc001ano.1	-	4	396_398	c.295_297delGAG	c.(295-297)GAGdel	p.E99del	PLEKHG5_uc001ann.1_In_Frame_Del_p.E80del|PLEKHG5_uc001anq.1_In_Frame_Del_p.E120del|PLEKHG5_uc001anp.1_In_Frame_Del_p.E120del|PLEKHG5_uc009vma.1_5'UTR|PLEKHG5_uc010nzr.1_In_Frame_Del_p.E112del|PLEKHG5_uc001ank.1_In_Frame_Del_p.E43del|PLEKHG5_uc009vmb.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anl.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anm.1_In_Frame_Del_p.E43del	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	99	Poly-Glu.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CCACAGAGCTCTCCTCCTCCTCC	0.631											OREG0013041	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	555	---	---	---	---					
VAMP3	9341	broad.mit.edu	37	1	7838212	7838214	+	In_Frame_Del	DEL	TCA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:7838212_7838214delTCA	uc001aol.2	+	4	381_383	c.266_268delTCA	c.(265-270)TTCATC>TTC	p.I94del		NM_004781	NP_004772	Q15836	VAMP3_HUMAN	vesicle-associated membrane protein 3	94	Helical; Anchor for type IV membrane protein; (Potential).				cellular membrane fusion|positive regulation of receptor recycling|protein complex assembly|protein transport|retrograde transport, endosome to Golgi|substrate adhesion-dependent cell spreading|vesicle docking involved in exocytosis	cell junction|clathrin-coated vesicle|integral to membrane|recycling endosome|synapse|synaptosome	protein binding				0	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;6.33e-69)|GBM - Glioblastoma multiforme(8;2.07e-34)|Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.38e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000805)|KIRC - Kidney renal clear cell carcinoma(229;0.000917)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		CTGGTTATCTTCATCATCATCAT	0.365													16	1090	---	---	---	---					
DHRS3	9249	broad.mit.edu	37	1	12632790	12632792	+	In_Frame_Del	DEL	GGA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:12632790_12632792delGGA	uc001auc.2	-	5	1255_1257	c.788_790delTCC	c.(787-792)CTCCCA>CCA	p.L263del	DHRS3_uc001aub.2_In_Frame_Del_p.L178del	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	263	Helical; (Potential).				retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	ATTGTCCATGGGAGGAGGAGGAG	0.369													7	104	---	---	---	---					
AADACL3	126767	broad.mit.edu	37	1	12785492	12785493	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:12785492_12785493insT	uc009vnn.1	+	4	815_816	c.582_583insT	c.(580-585)TACTGTfs	p.Y194fs	AADACL3_uc001aug.1_Frame_Shift_Ins_p.Y124fs	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	194_195							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TCATCTGCTACTGTTTTTTTCA	0.455													9	787	---	---	---	---					
C1orf89	79363	broad.mit.edu	37	1	16559488	16559489	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:16559488_16559489insA	uc001ayd.2	-	3	711_712	c.289_290insT	c.(289-291)TGGfs	p.W97fs		NM_030907	NP_112169	Q9BU20	RSG1_HUMAN	hypothetical protein LOC79363	97	Small GTPase-like.				cellular protein localization|cilium assembly|exocytosis|protein transport|regulation of exocytosis|regulation of vesicle fusion|small GTPase mediated signal transduction	cilium|microtubule basal body	GTP binding				0		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.2e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;9.12e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		CTTGGCTGGCCAAAATACCACG	0.559													7	671	---	---	---	---					
ZBTB40	9923	broad.mit.edu	37	1	22838561	22838563	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:22838561_22838563delAAG	uc001bft.2	+	12	2906_2908	c.2395_2397delAAG	c.(2395-2397)AAGdel	p.K803del	ZBTB40_uc001bfu.2_In_Frame_Del_p.K803del|ZBTB40_uc009vqi.1_In_Frame_Del_p.K691del|ZBTB40_uc001bfv.1_In_Frame_Del_p.K432del	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	803					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		CGATGCCCCCAAGAAGAAGAAGA	0.517													20	309	---	---	---	---					
EXTL1	2134	broad.mit.edu	37	1	26349533	26349535	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:26349533_26349535delCCT	uc001blf.2	+	1	1263_1265	c.396_398delCCT	c.(394-399)TGCCTC>TGC	p.L137del		NM_004455	NP_004446	Q92935	EXTL1_HUMAN	exostoses-like 1	137	Lumenal (Potential).				skeletal system development	integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|protein binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00594)|READ - Rectum adenocarcinoma(331;0.0649)		CTGGGGCCTGCCTCCTCCTCCTC	0.606													8	291	---	---	---	---					
PHACTR4	65979	broad.mit.edu	37	1	28800272	28800273	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:28800272_28800273insC	uc001bpw.2	+	7	1312_1313	c.1030_1031insC	c.(1030-1032)TCCfs	p.S344fs	PHACTR4_uc001bpv.1_RNA|PHACTR4_uc001bpx.2_Frame_Shift_Ins_p.S328fs|PHACTR4_uc001bpy.2_Frame_Shift_Ins_p.S354fs	NM_001048183	NP_001041648	Q8IZ21	PHAR4_HUMAN	phosphatase and actin regulator 4 isoform 1	344	Pro-rich.						actin binding|protein phosphatase inhibitor activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;7.01e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;1.35e-21)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0144)|READ - Rectum adenocarcinoma(331;0.0649)		TCGCTCTCCGTCCCCCCCACTG	0.515													19	1220	---	---	---	---					
DLGAP3	58512	broad.mit.edu	37	1	35365852	35365852	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:35365852delC	uc001byc.2	-	2	1130	c.1130delG	c.(1129-1131)GGTfs	p.G377fs		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	377					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				GGTGGGGTAACCCCCCCAGTC	0.602													9	623	---	---	---	---					
MACF1	23499	broad.mit.edu	37	1	39788668	39788670	+	In_Frame_Del	DEL	GGA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:39788668_39788670delGGA	uc010ois.1	+	34	4444_4446	c.4239_4241delGGA	c.(4237-4242)CTGGAG>CTG	p.E1417del	MACF1_uc001cda.1_In_Frame_Del_p.E1325del|MACF1_uc001cdc.1_In_Frame_Del_p.E504del|MACF1_uc009vvq.1_In_Frame_Del_p.E474del|MACF1_uc001cdb.1_In_Frame_Del_p.E504del	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1417	Poly-Glu.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TCCGGCGTCTGGAGGAGGAGGAG	0.389													8	617	---	---	---	---					
TMCO2	127391	broad.mit.edu	37	1	40713708	40713709	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:40713708_40713709delTC	uc001cfe.2	+	1	136_137	c.43_44delTC	c.(43-45)TCTfs	p.S15fs		NM_001008740	NP_001008740	Q7Z6W1	TMCO2_HUMAN	transmembrane and coiled-coil domains 2	15						integral to membrane				ovary(1)	1	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			CCTCTTAGAGTCTCTCTCTCTC	0.406													15	988	---	---	---	---					
CYP4Z2P	163720	broad.mit.edu	37	1	47325313	47325315	+	RNA	DEL	GTT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:47325313_47325315delGTT	uc001cqo.1	-	9		c.1253_1255delAAC				NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						AAAAAAAAAAGTTGTTTTAAGAC	0.409													8	247	---	---	---	---					
TMEM48	55706	broad.mit.edu	37	1	54298190	54298192	+	In_Frame_Del	DEL	TTA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:54298190_54298192delTTA	uc001cvs.2	-	3	492_494	c.251_253delTAA	c.(250-255)ATAAGT>AGT	p.I84del	TMEM48_uc010onu.1_In_Frame_Del_p.I84del|TMEM48_uc001cvt.2_5'UTR|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_5'UTR	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	84	Helical; Name=2; (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TTGAAAATACTTATTATTATTAT	0.305													13	298	---	---	---	---					
TNNI3K	51086	broad.mit.edu	37	1	74957824	74957826	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:74957824_74957826delCTT	uc001dgf.1	+	23	2276_2278	c.2225_2227delCTT	c.(2224-2229)CCTTCT>CCT	p.S746del	TNNI3K_uc001dge.1_In_Frame_Del_p.S847del	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	746	Poly-Ser.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TCTCTCTCACCTTCTTCTTCTTC	0.473													9	1080	---	---	---	---					
LPAR3	23566	broad.mit.edu	37	1	85331764	85331764	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:85331764delA	uc001dkl.2	-	1	79	c.40delT	c.(40-42)TATfs	p.Y14fs	LPAR3_uc009wcj.1_Frame_Shift_Del_p.Y14fs	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	14	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						CTCCTATTATAAAAAAAGTCC	0.338													7	537	---	---	---	---					
GBP3	2635	broad.mit.edu	37	1	89473441	89473442	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:89473441_89473442insT	uc001dmt.2	-	11	1958_1959	c.1753_1754insA	c.(1753-1755)ACCfs	p.T585fs	GBP3_uc010oss.1_Frame_Shift_Ins_p.T506fs|GBP3_uc001dmu.2_Frame_Shift_Ins_p.T451fs|GBP3_uc001dmv.2_RNA	NM_018284	NP_060754	Q9H0R5	GBP3_HUMAN	guanylate binding protein 3	585	Potential.					integral to membrane	GTP binding|GTPase activity			ovary(1)|pancreas(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0103)|Epithelial(280;0.0293)		ATATCTCTTGGTTTTTTTTTTC	0.371													45	557	---	---	---	---					
HFE2	148738	broad.mit.edu	37	1	145415369	145415371	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:145415369_145415371delGAG	uc001eni.2	+	3	513_515	c.188_190delGAG	c.(187-192)CGAGGA>CGA	p.G69del	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_5'UTR|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	69	Poly-Gly.			G -> GG (in Ref. 3; ABC40718).	axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGAGCACTTCGAGGAGGAGGAGG	0.626													12	486	---	---	---	---					
ADAMTSL4	54507	broad.mit.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	-	-	rs149280379		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:150530506delG	uc001eux.2	+	14	2499	c.2263delG	c.(2263-2265)GGGfs	p.G755fs	ADAMTSL4_uc001euw.2_Frame_Shift_Del_p.G755fs|ADAMTSL4_uc009wlw.2_Frame_Shift_Del_p.G778fs|ADAMTSL4_uc010pcg.1_Frame_Shift_Del_p.G716fs|ADAMTSL4_uc009wlx.2_5'UTR	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	755	TSP type-1 2.				apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GCAGGAATTTGGGGGGGGTGG	0.692													19	682	---	---	---	---					
TCHH	7062	broad.mit.edu	37	1	152083818	152083820	+	In_Frame_Del	DEL	CGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:152083818_152083820delCGG	uc001ezp.2	-	2	1873_1875	c.1873_1875delCCG	c.(1873-1875)CCGdel	p.P625del	TCHH_uc009wne.1_In_Frame_Del_p.P625del	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	625	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCTTCCTCCGGCTCCTCGCGC	0.680													7	458	---	---	---	---					
LCE4A	199834	broad.mit.edu	37	1	152681693	152681698	+	In_Frame_Del	DEL	TGTGGT	-	-	rs113617356		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:152681693_152681698delTGTGGT	uc001fak.2	+	1	171_176	c.142_147delTGTGGT	c.(142-147)TGTGGTdel	p.CG48del		NM_178356	NP_848133	Q5TA78	LCE4A_HUMAN	late cornified envelope 4A	48_49	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.116)			CTCTGGGGGCTGTGGTTGCTGCAGCT	0.578													8	760	---	---	---	---					
KCNN3	3782	broad.mit.edu	37	1	154680586	154680588	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:154680586_154680588delGCT	uc001ffp.2	-	8	2374_2376	c.2060_2062delAGC	c.(2059-2064)CAGCTC>CTC	p.Q687del	KCNN3_uc001ffo.2_In_Frame_Del_p.Q382del	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	692	Poly-Gln.					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GCAGACAGGAGCTGCTGCTGCTG	0.640													13	420	---	---	---	---					
PBXIP1	57326	broad.mit.edu	37	1	154917508	154917510	+	In_Frame_Del	DEL	GGT	-	-	rs143592003		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:154917508_154917510delGGT	uc001ffr.2	-	11	2245_2247	c.2186_2188delACC	c.(2185-2190)CACCGG>CGG	p.H729del	PBXIP1_uc001ffs.2_In_Frame_Del_p.H700del|PBXIP1_uc010pep.1_In_Frame_Del_p.H574del	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	729	His-rich.				cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGTCAGCCCCGGTGGTGGTGGTG	0.640													8	414	---	---	---	---					
NES	10763	broad.mit.edu	37	1	156640235	156640235	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:156640235delC	uc001fpq.2	-	4	3878	c.3745delG	c.(3745-3747)GTGfs	p.V1249fs		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1249	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTCCCCTGCACCCCCCAGCTA	0.662													9	1055	---	---	---	---					
PVRL4	81607	broad.mit.edu	37	1	161059028	161059030	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:161059028_161059030delAGC	uc001fxo.2	-	1	356_358	c.57_59delGCT	c.(55-60)CTGCTA>CTA	p.19_20LL>L		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	19_20					adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TGCCAGCAGTAGCAGCAGCAGCA	0.512													12	858	---	---	---	---					
PCP4L1	654790	broad.mit.edu	37	1	161254154	161254156	+	In_Frame_Del	DEL	GGA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:161254154_161254156delGGA	uc001gad.2	+	3	338_340	c.90_92delGGA	c.(88-93)GCGGAG>GCG	p.E35del		NM_001102566	NP_001096036	A6NKN8	PC4L1_HUMAN	Purkinje cell protein 4 like 1	35											0	all_cancers(52;4.16e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TCAAGAAGGCGGAGGAGGAGGAG	0.488													13	718	---	---	---	---					
LMX1A	4009	broad.mit.edu	37	1	165177332	165177334	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:165177332_165177334delTGC	uc001gcy.1	-	6	1004_1006	c.783_785delGCA	c.(781-786)CAGCAA>CAA	p.261_262QQ>Q	LMX1A_uc001gcz.1_In_Frame_Del_p.261_262QQ>Q|LMX1A_uc001gcw.1_5'UTR|LMX1A_uc001gcx.1_In_Frame_Del_p.12_13QQ>Q	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	261_262	Poly-Gln.|Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CTGCTGATCTTGCTGCTGCTGCT	0.567													10	296	---	---	---	---					
POU2F1	5451	broad.mit.edu	37	1	167385016	167385018	+	In_Frame_Del	DEL	CCA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:167385016_167385018delCCA	uc001gec.2	+	17	2363_2365	c.2201_2203delCCA	c.(2200-2205)TCCACC>TCC	p.T738del	POU2F1_uc001ged.2_In_Frame_Del_p.T736del|POU2F1_uc001gee.2_In_Frame_Del_p.T738del|POU2F1_uc010plh.1_In_Frame_Del_p.T675del|POU2F1_uc001gef.2_In_Frame_Del_p.T750del|POU2F1_uc001geg.2_Intron	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	738					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						GGGGCTGCGTCCACCACCACCAC	0.601													7	1100	---	---	---	---					
TNR	7143	broad.mit.edu	37	1	175372615	175372615	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:175372615delC	uc001gkp.1	-	2	718	c.637delG	c.(637-639)GTGfs	p.V213fs	TNR_uc009wwu.1_Frame_Shift_Del_p.V213fs|TNR_uc010pmz.1_Frame_Shift_Del_p.V213fs	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	213	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCCACACACACCCCCCGGCTG	0.607													12	1171	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186273952	186273954	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:186273952_186273954delTCC	uc001gru.3	+	6	547_549	c.496_498delTCC	c.(496-498)TCCdel	p.S177del	PRG4_uc001grt.3_In_Frame_Del_p.S136del|PRG4_uc009wyl.2_Intron|PRG4_uc009wym.2_Intron|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	177	Ser-rich.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AAATCAAGAGtcctcctcctcct	0.261													7	202	---	---	---	---					
CAMSAP1L1	23271	broad.mit.edu	37	1	200822549	200822549	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:200822549delA	uc001gvl.2	+	14	4052	c.3782delA	c.(3781-3783)CAAfs	p.Q1261fs	CAMSAP1L1_uc001gvk.2_Frame_Shift_Del_p.Q1250fs|CAMSAP1L1_uc001gvm.2_Frame_Shift_Del_p.Q1234fs	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1261				Q -> K (in Ref. 3; AAH56910).		cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GTAGTAAAACAAAAAAAACAG	0.368													11	353	---	---	---	---					
INTS7	25896	broad.mit.edu	37	1	212115191	212115193	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:212115191_212115193delTGC	uc001hiw.1	-	20	2967_2969	c.2862_2864delGCA	c.(2860-2865)CAGCAA>CAA	p.954_955QQ>Q	INTS7_uc009xdb.1_In_Frame_Del_p.934_935QQ>Q|INTS7_uc001hix.1_In_Frame_Del_p.830_831QQ>Q|INTS7_uc001hiy.1_In_Frame_Del_p.940_941QQ>Q|INTS7_uc010pta.1_In_Frame_Del_p.905_906QQ>Q	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	954_955	Gln-rich.				snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		GGCATTGCGTTGCTGCTGCTGCT	0.443													11	1115	---	---	---	---					
PCNXL2	80003	broad.mit.edu	37	1	233161072	233161074	+	In_Frame_Del	DEL	GCA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:233161072_233161074delGCA	uc001hvl.2	-	26	4658_4660	c.4423_4425delTGC	c.(4423-4425)TGCdel	p.C1475del	PCNXL2_uc001hvk.1_In_Frame_Del_p.C127del|PCNXL2_uc001hvm.1_Intron	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1475						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GGCCTGGTTTGCAGCAGCAGCAG	0.591											OREG0014326	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	657	---	---	---	---					
MTR	4548	broad.mit.edu	37	1	237024474	237024474	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr1:237024474delA	uc001hyi.3	+	20	2516	c.2093delA	c.(2092-2094)CAAfs	p.Q698fs	MTR_uc010pxw.1_Frame_Shift_Del_p.Q291fs|MTR_uc010pxx.1_Intron|MTR_uc010pxy.1_Frame_Shift_Del_p.Q552fs	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	698	B12-binding N-terminal.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	AGGTTAAACCAAAAAAAATAT	0.279													17	388	---	---	---	---					
A1CF	29974	broad.mit.edu	37	10	52569667	52569669	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:52569667_52569669delAGC	uc001jjj.2	-	12	1806_1808	c.1618_1620delGCT	c.(1618-1620)GCTdel	p.A540del	A1CF_uc010qhn.1_In_Frame_Del_p.A540del|A1CF_uc001jji.2_In_Frame_Del_p.A532del|A1CF_uc001jjh.2_In_Frame_Del_p.A540del|A1CF_uc010qho.1_In_Frame_Del_p.A548del|A1CF_uc009xov.2_In_Frame_Del_p.A532del	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	540					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GGAAagcagtagcagcagcagca	0.433													9	302	---	---	---	---					
ZMIZ1	57178	broad.mit.edu	37	10	81070787	81070789	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:81070787_81070789delCTC	uc001kaf.2	+	24	3514_3516	c.2942_2944delCTC	c.(2941-2946)GCTCCT>GCT	p.P986del	ZMIZ1_uc001kag.2_In_Frame_Del_p.P862del|ZMIZ1_uc010qlq.1_Intron	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	986	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CACAGTGGGGCTCCTCCTCCTCC	0.635													7	650	---	---	---	---					
FAS	355	broad.mit.edu	37	10	90768708	90768708	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:90768708delT	uc001kfr.2	+	4	743	c.397delT	c.(397-399)TTTfs	p.F133fs	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_Frame_Shift_Del_p.F133fs|FAS_uc001kft.2_Frame_Shift_Del_p.F133fs|FAS_uc010qnb.1_Intron|FAS_uc010qnc.1_Intron|FAS_uc001kfw.2_Intron|FAS_uc010qnd.1_Intron|FAS_uc010qne.1_Intron|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	133	TNFR-Cys 3.|Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		TAAACCAAACTTTTTTTGTAA	0.368									Autoimmune_Lymphoproliferative_syndrome_type_I				8	2366	---	---	---	---					
HELLS	3070	broad.mit.edu	37	10	96331163	96331163	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:96331163delA	uc001kjt.2	+	7	559	c.454delA	c.(454-456)AAAfs	p.K152fs	HELLS_uc001kjs.2_Frame_Shift_Del_p.K136fs|HELLS_uc009xul.2_Frame_Shift_Del_p.K152fs|HELLS_uc009xum.2_Frame_Shift_Del_p.K152fs|HELLS_uc009xun.2_Frame_Shift_Del_p.K28fs|HELLS_uc009xuo.2_Frame_Shift_Del_p.K152fs|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Frame_Shift_Del_p.K14fs|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	152					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		GTCTGTGGCTAAAAAAAATAA	0.214													8	224	---	---	---	---					
NT5C2	22978	broad.mit.edu	37	10	104849436	104849438	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr10:104849436_104849438delTCC	uc001kwo.2	-	19	1863_1865	c.1677_1679delGGA	c.(1675-1680)GAGGAA>GAA	p.559_560EE>E	NT5C2_uc010qqp.1_In_Frame_Del_p.530_531EE>E|NT5C2_uc001kwq.2_In_Frame_Del_p.559_560EE>E|NT5C2_uc001kwp.2_In_Frame_Del_p.406_407EE>E	NM_012229	NP_036361	P49902	5NTC_HUMAN	5'-nucleotidase, cytosolic II	559_560	Asp/Glu-rich (acidic).				purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|metal ion binding|nucleotide binding|protein binding				0		all_hematologic(284;0.176)|Colorectal(252;0.178)		Epithelial(162;1.33e-08)|all cancers(201;1.04e-07)|BRCA - Breast invasive adenocarcinoma(275;0.159)	Adenosine triphosphate(DB00171)|Ribavirin(DB00811)	tccttattcttcctcctcctcct	0.389													12	179	---	---	---	---					
NLRP6	171389	broad.mit.edu	37	11	281553	281555	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:281553_281555delGAG	uc010qvs.1	+	4	1819_1821	c.1819_1821delGAG	c.(1819-1821)GAGdel	p.E611del	NLRP6_uc010qvt.1_In_Frame_Del_p.E611del	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	611	Poly-Glu.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGAAGAGCCAGAGGAGGAGGAGG	0.670													8	659	---	---	---	---					
ATHL1	80162	broad.mit.edu	37	11	293711	293712	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:293711_293712insC	uc010qvu.1	+	10	1713_1714	c.1598_1599insC	c.(1597-1599)GGCfs	p.G533fs	ATHL1_uc001lor.3_Frame_Shift_Ins_p.G285fs|ATHL1_uc001lou.3_Frame_Shift_Ins_p.G108fs|ATHL1_uc001lov.3_5'Flank	NM_025092	NP_079368	Q32M88	ATHL1_HUMAN	ATH1, acid trehalase-like 1	533					carbohydrate metabolic process		hydrolase activity, acting on glycosyl bonds			liver(1)|central_nervous_system(1)|skin(1)	3		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.38e-28)|Epithelial(43;3.25e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		TCCCCCCAGGGCCCCGCCATGA	0.619													7	564	---	---	---	---					
CDHR5	53841	broad.mit.edu	37	11	618999	618999	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:618999delC	uc001lqj.2	-	13	1665	c.1560delG	c.(1558-1560)GGGfs	p.G520fs	IRF7_uc001lqh.2_5'Flank|IRF7_uc001lqi.2_5'Flank|IRF7_uc010qwh.1_5'Flank|CDHR5_uc001lqk.2_Intron|CDHR5_uc009ycc.2_Frame_Shift_Del_p.G354fs|CDHR5_uc009ycd.2_Frame_Shift_Del_p.G514fs|CDHR5_uc001lql.2_Frame_Shift_Del_p.G520fs	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	520	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CACCCGGGGGCCCCCCGGGTG	0.682													10	598	---	---	---	---					
TSPAN4	7106	broad.mit.edu	37	11	864443	864445	+	In_Frame_Del	DEL	CTG	-	-	rs61867552	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:864443_864445delCTG	uc001lsd.1	+	5	471_473	c.262_264delCTG	c.(262-264)CTGdel	p.L92del	TSPAN4_uc001lse.1_In_Frame_Del_p.L28del|TSPAN4_uc001lsf.1_In_Frame_Del_p.L92del|TSPAN4_uc001lsg.1_In_Frame_Del_p.L92del|TSPAN4_uc001lsh.1_In_Frame_Del_p.L92del|TSPAN4_uc001lsi.1_In_Frame_Del_p.L92del|TSPAN4_uc001lsj.1_In_Frame_Del_p.L92del	NM_003271	NP_003262	O14817	TSN4_HUMAN	tetraspanin 4 isoform a	92	Helical; (Potential).				protein complex assembly	integral to plasma membrane				breast(1)	1		all_cancers(49;2.64e-08)|all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)		all cancers(45;4.32e-25)|Epithelial(43;3.29e-24)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACAGTTCTTCCTGCTGCTGCTGC	0.650													28	652	---	---	---	---					
SMPD1	6609	broad.mit.edu	37	11	6412853	6412854	+	Frame_Shift_Ins	INS	-	C	C	rs74053349	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:6412853_6412854insC	uc001mcw.2	+	2	732_733	c.558_559insC	c.(556-561)CCGCCCfs	p.P186fs	SMPD1_uc001mcv.1_Intron|SMPD1_uc009yex.2_RNA|SMPD1_uc001mcx.2_Frame_Shift_Ins_p.P186fs|SMPD1_uc009yew.2_Frame_Shift_Ins_p.P185fs	NM_000543	NP_000534	P17405	ASM_HUMAN	sphingomyelin phosphodiesterase 1, acid	184_185					cell death|ceramide biosynthetic process|negative regulation of MAP kinase activity|nervous system development|positive regulation of protein dephosphorylation|signal transduction|sphingomyelin catabolic process|termination of signal transduction	lysosome	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;4.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)	Desipramine(DB01151)	TGCCGAAGCCGCCCCCCAAACC	0.624													9	81	---	---	---	---					
RRP8	23378	broad.mit.edu	37	11	6623336	6623338	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:6623336_6623338delTCC	uc001med.2	-	2	286_288	c.207_209delGGA	c.(205-210)GAGGAA>GAA	p.69_70EE>E	ILK_uc001mee.2_5'Flank|ILK_uc001mef.2_5'Flank|ILK_uc010rap.1_5'Flank|ILK_uc010raq.1_5'Flank|ILK_uc001meg.2_5'Flank|ILK_uc001meh.2_5'Flank	NM_015324	NP_056139	O43159	RRP8_HUMAN	ribosomal RNA processing 8, methyltransferase,	69_70	Poly-Glu.				chromatin modification|chromatin silencing at rDNA|rRNA processing|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	methylated histone residue binding|S-adenosylmethionine-dependent methyltransferase activity				0						CTTCTTCCTTTCCTCCTCCTCCT	0.532													9	298	---	---	---	---					
OR10A5	144124	broad.mit.edu	37	11	6867223	6867225	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:6867223_6867225delTTC	uc001met.1	+	1	310_312	c.310_312delTTC	c.(310-312)TTCdel	p.F108del		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCAGATGTATTTCTTCTTCTTCT	0.517													11	577	---	---	---	---					
TSG101	7251	broad.mit.edu	37	11	18505466	18505466	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:18505466delT	uc001mor.2	-	8	920	c.794delA	c.(793-795)AAGfs	p.K265fs		NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	265	Potential.				cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						CTGGTGACCCTTTTTCAGGTC	0.438													8	1550	---	---	---	---					
OR4C13	283092	broad.mit.edu	37	11	49974149	49974149	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:49974149delT	uc010rhz.1	+	1	175	c.175delT	c.(175-177)TTTfs	p.F59fs		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CCCCATGTACTTTTTCCTGGC	0.423													8	1787	---	---	---	---					
OR4C15	81309	broad.mit.edu	37	11	55322733	55322733	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:55322733delT	uc010rig.1	+	1	951	c.951delT	c.(949-951)GCTfs	p.A317fs		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTCCATCTGCTTTTTCCCTTG	0.403										HNSCC(20;0.049)			7	1014	---	---	---	---					
TNKS1BP1	85456	broad.mit.edu	37	11	57076529	57076529	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:57076529delC	uc001njr.2	-	5	3968	c.3656delG	c.(3655-3657)GGAfs	p.G1219fs	TNKS1BP1_uc001njs.2_Frame_Shift_Del_p.G1219fs|TNKS1BP1_uc009ymd.1_Frame_Shift_Del_p.G670fs	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1219	Gly-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				AACTCCGATTCCCCCCGGCTC	0.582													8	1602	---	---	---	---					
CPSF7	79869	broad.mit.edu	37	11	61183765	61183767	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:61183765_61183767delAGG	uc001nrq.2	-	6	909_911	c.775_777delCCT	c.(775-777)CCTdel	p.P259del	CPSF7_uc001nro.2_In_Frame_Del_p.P250del|CPSF7_uc001nrp.2_In_Frame_Del_p.P302del|CPSF7_uc001nrr.2_In_Frame_Del_p.P250del|CPSF7_uc001nrs.1_In_Frame_Del_p.P160del	NM_001136040	NP_001129512	Q8N684	CPSF7_HUMAN	pre-mRNA cleavage factor I, 59 kDa subunit	259	Pro-rich.				mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	mRNA cleavage factor complex	nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						AGTGGATACCAGGAGGAGGAGGA	0.611													11	315	---	---	---	---					
FADS2	9415	broad.mit.edu	37	11	61607885	61607887	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:61607885_61607887delTCC	uc001nsl.1	+	3	548_550	c.398_400delTCC	c.(397-402)TTCCTC>TTC	p.L137del	FADS2_uc001nsj.2_In_Frame_Del_p.L115del|FADS2_uc010rlo.1_In_Frame_Del_p.L106del|FADS2_uc001nsk.2_In_Frame_Del_p.L137del	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	137	Helical; (Potential).			LLLL -> RTRG (in Ref. 8; CAB43280).	electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	CACGTGTTCTTCCTCCTCCTCCT	0.537													10	1085	---	---	---	---					
VEGFB	7423	broad.mit.edu	37	11	64004663	64004663	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:64004663delA	uc001nyw.2	+	5	419	c.379delA	c.(379-381)AAAfs	p.K127fs	VEGFB_uc001nyx.2_Frame_Shift_Del_p.K127fs	NM_003377	NP_003368	P49765	VEGFB_HUMAN	vascular endothelial growth factor B precursor	127					anti-apoptosis|induction of positive chemotaxis|negative regulation of gene expression|negative regulation of neuron apoptosis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular wound healing|vascular endothelial growth factor receptor signaling pathway	extracellular region|extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|heparin binding|vascular endothelial growth factor receptor 1 binding				0						TTTCAGACCTAAAAAAAAGGA	0.388													13	592	---	---	---	---					
MRPL49	740	broad.mit.edu	37	11	64892961	64892961	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:64892961delC	uc001oda.1	+	3	322	c.231delC	c.(229-231)GACfs	p.D77fs	MRPL49_uc001ocz.1_RNA	NM_004927	NP_004918	Q13405	RM49_HUMAN	mitochondrial ribosomal protein L49	77					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						CTGTTGCAGACCCCCCACCCA	0.562													7	852	---	---	---	---					
NOX4	50507	broad.mit.edu	37	11	89106662	89106663	+	Splice_Site	INS	-	A	A	rs56022003		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:89106662_89106663insA	uc001pct.2	-	12	1314	c.1075_splice	c.e12-1	p.C359_splice	NOX4_uc009yvr.2_Splice_Site_p.C334_splice|NOX4_uc001pcu.2_Splice_Site_p.C285_splice|NOX4_uc001pcw.2_Splice_Site_p.C52_splice|NOX4_uc001pcx.2_Splice_Site_p.C52_splice|NOX4_uc001pcv.2_Splice_Site_p.C359_splice|NOX4_uc009yvo.2_Splice_Site|NOX4_uc010rtu.1_Splice_Site_p.C193_splice|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Splice_Site_p.C335_splice|NOX4_uc009yvq.2_Splice_Site_p.C335_splice	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a						cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				AGTTGGACACTAAAAAAAAATA	0.292													13	739	---	---	---	---					
TAF1D	79101	broad.mit.edu	37	11	93471452	93471453	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:93471452_93471453insT	uc001ped.2	-	3	483_484	c.281_282insA	c.(280-282)AAGfs	p.K94fs	SNORA8_uc001pec.2_5'Flank|TAF1D_uc001pdz.2_RNA|TAF1D_uc001pea.1_RNA	NM_024116	NP_077021	Q9H5J8	TAF1D_HUMAN	TATA box binding protein (TBP)-associated	94					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding				0						TCCTCTTTTTCTTTTTTTTATA	0.347													8	666	---	---	---	---					
BUD13	84811	broad.mit.edu	37	11	116628987	116628987	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:116628987delT	uc001ppn.2	-	7	1531	c.1497delA	c.(1495-1497)AAAfs	p.K499fs	BUD13_uc001ppo.2_Frame_Shift_Del_p.K365fs	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	499	Potential.									large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		TCCCTTACCCTTTTCCCCACT	0.448													8	1286	---	---	---	---					
CBL	867	broad.mit.edu	37	11	119149356	119149358	+	In_Frame_Del	DEL	ATG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr11:119149356_119149358delATG	uc001pwe.2	+	9	1502_1504	c.1364_1366delATG	c.(1363-1368)TATGAT>TAT	p.D460del		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	460	Asp/Glu-rich (acidic).				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding	p.D460del(1)|p.E366_K477del(1)		haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		TCCCCAAATTATGATGATGATGA	0.473									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				17	310	---	---	---	---					
GPRC5A	9052	broad.mit.edu	37	12	13061419	13061420	+	Frame_Shift_Ins	INS	-	TGGC	TGGC			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:13061419_13061420insTGGC	uc001rba.2	+	2	886_887	c.236_237insTGGC	c.(235-237)TTTfs	p.F79fs	GPRC5A_uc001raz.2_Frame_Shift_Ins_p.F79fs	NM_003979	NP_003970	Q8NFJ5	RAI3_HUMAN	G protein-coupled receptor, family C, group 5,	79	Helical; Name=2; (Potential).					cytoplasmic vesicle membrane|Golgi apparatus|integral to plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.141)		BRCA - Breast invasive adenocarcinoma(232;0.0708)	Tretinoin(DB00755)	TTGGGCATCTTTGGCCTCACCT	0.559													46	741	---	---	---	---					
FAR2	55711	broad.mit.edu	37	12	29450110	29450110	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:29450110delA	uc001ris.3	+	4	669	c.522delA	c.(520-522)CCAfs	p.P174fs	FAR2_uc001rit.2_Frame_Shift_Del_p.P174fs|FAR2_uc009zjm.2_Frame_Shift_Del_p.P77fs|uc001riu.1_Intron	NM_018099	NP_060569	Q96K12	FACR2_HUMAN	fatty acyl CoA reductase 2	174					ether lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	binding|oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor				0						CTGTGGAGCCAAAAAAAATCA	0.388													17	561	---	---	---	---					
MLL2	8085	broad.mit.edu	37	12	49442512	49442514	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:49442512_49442514delTCC	uc001rta.3	-	13	4059_4061	c.4059_4061delGGA	c.(4057-4062)GAGGAA>GAA	p.1353_1354EE>E		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1353_1354	Poly-Glu.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ATCATCTTCTTCCTCCTCCTCCT	0.478			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			8	1090	---	---	---	---					
OR10A7	121364	broad.mit.edu	37	12	55615114	55615116	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:55615114_55615116delCTT	uc010spf.1	+	1	306_308	c.306_308delCTT	c.(304-309)TACTTC>TAC	p.F107del		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						CCCAGATGTACTTCTTCTTCTTC	0.414													8	787	---	---	---	---					
OR6C75	390323	broad.mit.edu	37	12	55759486	55759486	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:55759486delT	uc010spk.1	+	1	592	c.592delT	c.(592-594)TTTfs	p.F198fs		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	198	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						ACTCATGGCATTTTTTTTAGC	0.393													8	381	---	---	---	---					
ERBB3	2065	broad.mit.edu	37	12	56481662	56481662	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:56481662delG	uc001sjh.2	+	6	890	c.697delG	c.(697-699)GGGfs	p.G233fs	ERBB3_uc009zoj.2_RNA|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Frame_Shift_Del_p.G174fs|ERBB3_uc001sji.2_5'Flank	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	233	Extracellular (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			TGAGTGTGCCGGGGGCTGCTC	0.547													7	897	---	---	---	---					
LRP1	4035	broad.mit.edu	37	12	57605740	57605742	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:57605740_57605742delTGC	uc001snd.2	+	87	13755_13757	c.13289_13291delTGC	c.(13288-13293)TTGCTG>TTG	p.4430_4431LL>L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4430_4431	Helical; (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCTCTGCTGTTGCTGCTGCTGCT	0.557													9	706	---	---	---	---					
LRIG3	121227	broad.mit.edu	37	12	59268350	59268351	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:59268350_59268351insG	uc001sqr.2	-	17	2946_2947	c.2700_2701insC	c.(2698-2703)ACCTGCfs	p.T900fs	LRIG3_uc009zqh.2_Frame_Shift_Ins_p.T840fs|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	900_901						integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			TCAATATGGCAGGTCCCTTTGA	0.401													8	342	---	---	---	---					
ACSS3	79611	broad.mit.edu	37	12	81624902	81624902	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:81624902delC	uc001szl.1	+	12	1672	c.1581delC	c.(1579-1581)TACfs	p.Y527fs	ACSS3_uc001szm.1_Frame_Shift_Del_p.Y526fs|ACSS3_uc001szn.1_Frame_Shift_Del_p.Y209fs	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	527						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						AGCATTTATACTTTGAAAAAT	0.303													18	130	---	---	---	---					
HVCN1	84329	broad.mit.edu	37	12	111099110	111099112	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:111099110_111099112delCTC	uc001trs.1	-	4	328_330	c.163_165delGAG	c.(163-165)GAGdel	p.E55del	HVCN1_uc001trq.1_In_Frame_Del_p.E55del|HVCN1_uc001trt.1_In_Frame_Del_p.E55del|HVCN1_uc010syd.1_In_Frame_Del_p.E35del	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	55	Cytoplasmic (Potential).|Poly-Glu.				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						GTGGTGGCTGctcctcctcctcc	0.517													8	235	---	---	---	---					
CUX2	23316	broad.mit.edu	37	12	111758235	111758237	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:111758235_111758237delTCC	uc001tsa.1	+	17	2575_2577	c.2422_2424delTCC	c.(2422-2424)TCCdel	p.S813del		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	813	Poly-Ser.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCCCTCGCTGTCCTCCTCCTCCT	0.749													7	223	---	---	---	---					
GCN1L1	10985	broad.mit.edu	37	12	120595737	120595739	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:120595737_120595739delCTC	uc001txo.2	-	26	3014_3016	c.3001_3003delGAG	c.(3001-3003)GAGdel	p.E1001del		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1001					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGGCCATCCACTCCTCCTCCTCC	0.631													8	321	---	---	---	---					
WDR66	144406	broad.mit.edu	37	12	122437802	122437802	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:122437802delA	uc009zxk.2	+	20	3329	c.3187delA	c.(3187-3189)AAAfs	p.K1063fs		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	1063							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		CTCCAAAGGGAAAAAGGCCAT	0.468													9	388	---	---	---	---					
VPS37B	79720	broad.mit.edu	37	12	123351892	123351892	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:123351892delG	uc001udl.2	-	4	732	c.629delC	c.(628-630)CCAfs	p.P210fs		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	210	Pro-rich.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		CGGGGGTGGTGGGGGGGGGAT	0.716													9	99	---	---	---	---					
SBNO1	55206	broad.mit.edu	37	12	123794283	123794283	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:123794283delT	uc010tap.1	-	25	3416	c.3416delA	c.(3415-3417)AATfs	p.N1139fs	SBNO1_uc009zxv.2_RNA|SBNO1_uc010tao.1_Frame_Shift_Del_p.N1138fs|SBNO1_uc010taq.1_Frame_Shift_Del_p.N90fs|SBNO1_uc001ues.1_Frame_Shift_Del_p.N90fs	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	1139							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		ATATCTTCCATTTTTTTTGGC	0.388													7	484	---	---	---	---					
CCDC92	80212	broad.mit.edu	37	12	124421800	124421800	+	Frame_Shift_Del	DEL	G	-	-	rs147939560		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr12:124421800delG	uc001ufw.1	-	5	948	c.801delC	c.(799-801)CCCfs	p.P267fs	CCDC92_uc001ufv.1_Frame_Shift_Del_p.P250fs|CCDC92_uc001ufx.1_Frame_Shift_Del_p.P267fs|CCDC92_uc001ufy.1_Frame_Shift_Del_p.P250fs	NM_025140	NP_079416	Q53HC0	CCD92_HUMAN	coiled-coil domain containing 92	267											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.0002)|OV - Ovarian serous cystadenocarcinoma(86;0.000222)|all cancers(50;0.00129)|BRCA - Breast invasive adenocarcinoma(302;0.242)		CGGAGGCGATGGGGGGGATGA	0.682													8	284	---	---	---	---					
SACS	26278	broad.mit.edu	37	13	23914687	23914687	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr13:23914687delT	uc001uon.2	-	10	3917	c.3328delA	c.(3328-3330)ATTfs	p.I1110fs	SACS_uc001uoo.2_Frame_Shift_Del_p.I963fs|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1110					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AAGGCTTCAATTTTTTTTGCC	0.383													16	1354	---	---	---	---					
CDK8	1024	broad.mit.edu	37	13	26975609	26975611	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr13:26975609_26975611delCAG	uc001uqr.1	+	12	1143_1145	c.1117_1119delCAG	c.(1117-1119)CAGdel	p.Q377del	CDK8_uc001uqs.1_In_Frame_Del_p.Q376del|CDK8_uc001uqt.1_In_Frame_Del_p.Q204del	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	377	Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		TGAGAAGAACCAGCAGCAGCAGC	0.463													7	213	---	---	---	---					
TEP1	7011	broad.mit.edu	37	14	20852647	20852647	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:20852647delC	uc001vxe.2	-	23	3282	c.3242delG	c.(3241-3243)GGTfs	p.G1081fs	TEP1_uc010ahk.2_Frame_Shift_Del_p.G431fs|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Frame_Shift_Del_p.G973fs|TEP1_uc010tlh.1_5'Flank	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1081					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AGCTGCCACACCCCCCCACTC	0.587													9	1149	---	---	---	---					
SALL2	6297	broad.mit.edu	37	14	21993077	21993079	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:21993077_21993079delGAG	uc001wbe.2	-	2	1065_1067	c.783_785delCTC	c.(781-786)TCCTCT>TCT	p.261_262SS>S	SALL2_uc010tly.1_In_Frame_Del_p.259_260SS>S|SALL2_uc010tlz.1_Intron|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Intron|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	261_262	Poly-Ser.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		Tgaagaggaagaggaggaggagg	0.512													9	196	---	---	---	---					
LRP10	26020	broad.mit.edu	37	14	23341527	23341529	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:23341527_23341529delCCT	uc001whd.2	+	1	568_570	c.15_17delCCT	c.(13-18)ACCCTC>ACC	p.L11del	LRP10_uc001whe.2_5'Flank	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	11					endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		TGTTGGCCACCCTCCTCCTCCTC	0.670													40	498	---	---	---	---					
LTB4R	1241	broad.mit.edu	37	14	24785074	24785074	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:24785074delT	uc001wos.2	+	2	538	c.217delT	c.(217-219)TTTfs	p.F73fs	LTB4R_uc010alp.2_Frame_Shift_Del_p.F73fs|LTB4R_uc001wou.2_Frame_Shift_Del_p.F73fs	NM_001143919	NP_001137391	Q15722	LT4R1_HUMAN	leukotriene B4 receptor	73	Helical; Name=2; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular component movement|immune response|inflammatory response|muscle contraction	integral to plasma membrane	nucleotide binding				0				GBM - Glioblastoma multiforme(265;0.018)		CACTGCTCCCTTTTTCCTTCA	0.582													7	789	---	---	---	---					
ADCY4	196883	broad.mit.edu	37	14	24803757	24803759	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:24803757_24803759delCAG	uc001wov.2	-	1	106_108	c.100_102delCTG	c.(100-102)CTGdel	p.L34del	ADCY4_uc001wow.2_In_Frame_Del_p.L34del|ADCY4_uc010toh.1_5'UTR|ADCY4_uc001wox.2_In_Frame_Del_p.L34del|ADCY4_uc001woy.2_In_Frame_Del_p.L34del|ADCY4_uc001woz.3_In_Frame_Del_p.L34del	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	34	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		GCACGATCCCCAGCAGCAGCAGC	0.700													8	57	---	---	---	---					
KCNH5	27133	broad.mit.edu	37	14	63174303	63174303	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:63174303delG	uc001xfx.2	-	11	2941	c.2890delC	c.(2890-2892)CAGfs	p.Q964fs	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	964	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CATGGTATCTGGGGGGGTACT	0.383													10	1360	---	---	---	---					
FOXN3	1112	broad.mit.edu	37	14	89629149	89629151	+	In_Frame_Del	DEL	GAG	-	-	rs139532153		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:89629149_89629151delGAG	uc001xxo.3	-	7	1217_1219	c.1080_1082delCTC	c.(1078-1083)TCCTCA>TCA	p.360_361SS>S	FOXN3_uc001xxn.3_In_Frame_Del_p.338_339SS>S|FOXN3_uc010atk.2_In_Frame_Del_p.338_339SS>S	NM_001085471	NP_001078940	O00409	FOXN3_HUMAN	checkpoint suppressor 1 isoform 1	360_361					DNA damage checkpoint|embryo development|G2 phase of mitotic cell cycle|negative regulation of transcription, DNA-dependent|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein C-terminus binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(2)|ovary(1)	3						GTCGTCGGCTGAGGAGGAGGAGG	0.650													9	173	---	---	---	---					
EVL	51466	broad.mit.edu	37	14	100594926	100594927	+	Frame_Shift_Ins	INS	-	C	C	rs150744633		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:100594926_100594927insC	uc001ygt.2	+	6	791_792	c.552_553insC	c.(550-555)CCGCCCfs	p.P184fs	EVL_uc001ygv.2_Frame_Shift_Ins_p.P190fs|EVL_uc001ygu.2_Frame_Shift_Ins_p.P186fs|EVL_uc010avu.2_Frame_Shift_Ins_p.P43fs	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	184_185	Pro-rich.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				GGcctccaccgccccccccacc	0.535													9	220	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													10	35	---	---	---	---					
C15orf24	56851	broad.mit.edu	37	15	34393991	34393993	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:34393991_34393993delAGC	uc001zhm.2	-	1	61_63	c.48_50delGCT	c.(46-51)CTGCTA>CTA	p.16_17LL>L	C15orf24_uc001zhn.2_5'UTR|PGBD4_uc001zho.2_5'Flank	NM_020154	NP_064539	Q9NPA0	CO024_HUMAN	chromosome 15 open reading frame 24 precursor	16_17						cytoplasm|integral to membrane	carbohydrate binding|carboxypeptidase activity|purine nucleotide binding				0		all_lung(180;1.76e-08)		all cancers(64;2.02e-17)|GBM - Glioblastoma multiforme(113;2.15e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		ATCCCCCGATAGCAGCAGCAGCA	0.665													14	709	---	---	---	---					
TTBK2	146057	broad.mit.edu	37	15	43038023	43038024	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:43038023_43038024insT	uc001zqo.2	-	15	4143_4144	c.3704_3705insA	c.(3703-3705)AAGfs	p.K1235fs	TTBK2_uc010bcy.2_Frame_Shift_Ins_p.K1166fs|uc001zqn.2_5'Flank	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1235					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		CTGGCTTACTCTTCCCTTGGGG	0.535													15	892	---	---	---	---					
TTBK2	146057	broad.mit.edu	37	15	43038025	43038026	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:43038025_43038026insC	uc001zqo.2	-	15	4141_4142	c.3702_3703insG	c.(3700-3705)GGGAAGfs	p.G1234fs	TTBK2_uc010bcy.2_Frame_Shift_Ins_p.G1165fs|uc001zqn.2_5'Flank	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1234_1235					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		GGCTTACTCTTCCCTTGGGGGG	0.540													13	915	---	---	---	---					
ZNF609	23060	broad.mit.edu	37	15	64972995	64972997	+	In_Frame_Del	DEL	CAC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr15:64972995_64972997delCAC	uc002ann.2	+	7	4096_4098	c.4096_4098delCAC	c.(4096-4098)CACdel	p.H1371del		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	1371	Poly-His.					nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GATGTCCACACACCACCACCACC	0.576													10	715	---	---	---	---					
C16orf79	283870	broad.mit.edu	37	16	2260586	2260588	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:2260586_2260588delCAG	uc010bsh.2	-	2	292_294	c.115_117delCTG	c.(115-117)CTGdel	p.L39del	C16orf79_uc002cpi.1_In_Frame_Del_p.L39del	NM_182563	NP_872369	Q6PL45	CP079_HUMAN	hypothetical protein LOC283870	39	Poly-Leu.|Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						CGGCcagcaccagcagcagcagc	0.562													7	100	---	---	---	---					
NPIP	9284	broad.mit.edu	37	16	15045758	15045759	+	Frame_Shift_Ins	INS	-	GT	GT			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:15045758_15045759insGT	uc002dcy.3	+	8	929_930	c.929_930insGT	c.(928-930)GAGfs	p.E310fs	NPIP_uc002dcx.3_RNA	NM_006985	NP_008916	Q9UND3	NPIP_HUMAN	nuclear pore complex interacting protein	310	Pro-rich.				mRNA transport|protein transport|transmembrane transport	nuclear membrane|nuclear pore					0						ACACCTCCCGAGTGTCTGCTCA	0.559													10	680	---	---	---	---					
C16orf62	57020	broad.mit.edu	37	16	19580800	19580802	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:19580800_19580802delTCC	uc002dgn.1	+	3	184_186	c.172_174delTCC	c.(172-174)TCCdel	p.S64del	C16orf62_uc002dgo.1_In_Frame_Del_p.S64del|C16orf62_uc010vas.1_5'UTR|C16orf62_uc002dgm.1_In_Frame_Del_p.S64del	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	64	Ser-rich.					integral to membrane				ovary(1)	1						TTCTTCCACGTCCTCCTCCTCCT	0.562													14	315	---	---	---	---					
DNAH3	55567	broad.mit.edu	37	16	21063028	21063028	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:21063028delG	uc010vbe.1	-	29	4201	c.4201delC	c.(4201-4203)CGGfs	p.R1401fs		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1401	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATCACCAGCCGGGGGGAGTTT	0.567													9	641	---	---	---	---					
IL4R	3566	broad.mit.edu	37	16	27373787	27373789	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:27373787_27373789delGAG	uc002don.2	+	11	1356_1358	c.1114_1116delGAG	c.(1114-1116)GAGdel	p.E376del	IL4R_uc002dop.3_In_Frame_Del_p.E361del|IL4R_uc010bxy.2_In_Frame_Del_p.E376del|IL4R_uc002doo.2_In_Frame_Del_p.E216del	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	376	Poly-Glu.|Cytoplasmic (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						GGTGGAGTGTGAGGAGGAGGAGG	0.591													16	262	---	---	---	---					
EIF3CL	728689	broad.mit.edu	37	16	28734579	28734581	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:28734579_28734581delGAG	uc010byj.2	+	9	960_962	c.871_873delGAG	c.(871-873)GAGdel	p.E295del	uc010vct.1_Intron|EIF3CL_uc010byi.2_In_Frame_Del_p.E294del|EIF3CL_uc002dqs.3_In_Frame_Del_p.E294del|EIF3C_uc002dqt.3_In_Frame_Del_p.E294del|EIF3CL_uc010vcy.1_In_Frame_Del_p.E284del|EIF3C_uc002dqu.3_In_Frame_Del_p.E294del|EIF3CL_uc002dqv.3_In_Frame_Del_p.E40del	NM_001099661	NP_001093131	B5ME19	B5ME19_HUMAN	eukaryotic translation initiation factor 3,	295						eukaryotic translation initiation factor 3 complex	translation initiation factor activity				0						GCGCCTGGATGAGGAGGAGGAGG	0.562													8	2350	---	---	---	---					
IRX6	79190	broad.mit.edu	37	16	55362674	55362676	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:55362674_55362676delGAG	uc002ehy.2	+	5	1317_1319	c.784_786delGAG	c.(784-786)GAGdel	p.E268del	IRX6_uc002ehx.2_In_Frame_Del_p.E268del	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	268						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						CCTggaggaagaggaggaggagg	0.493													15	269	---	---	---	---					
KCTD19	146212	broad.mit.edu	37	16	67327780	67327781	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:67327780_67327781insG	uc002esu.2	-	12	1935_1936	c.1884_1885insC	c.(1882-1887)CCCGCCfs	p.P628fs	KCTD19_uc002est.2_Frame_Shift_Ins_p.P400fs|KCTD19_uc010vjj.1_Frame_Shift_Ins_p.P371fs	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	628_629						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		ATGGGAGTGGCGGGAGGGTCTT	0.540													7	1372	---	---	---	---					
ACD	65057	broad.mit.edu	37	16	67693646	67693648	+	In_Frame_Del	DEL	GCA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:67693646_67693648delGCA	uc002etq.3	-	3	888_890	c.551_553delTGC	c.(550-555)CTGCAG>CAG	p.L184del	ACD_uc002etp.3_In_Frame_Del_p.L181del|ACD_uc002etr.3_In_Frame_Del_p.L181del|ACD_uc010vjt.1_In_Frame_Del_p.L174del|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	184					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CCGCAGTCCTGCAGCAGCAGCAG	0.650													10	775	---	---	---	---					
NFAT5	10725	broad.mit.edu	37	16	69726420	69726422	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:69726420_69726422delCAG	uc002exm.1	+	12	3846_3848	c.2638_2640delCAG	c.(2638-2640)CAGdel	p.Q888del	NFAT5_uc002exi.2_In_Frame_Del_p.Q812del|NFAT5_uc002exj.1_In_Frame_Del_p.Q812del|NFAT5_uc002exk.1_In_Frame_Del_p.Q812del|NFAT5_uc002exl.1_In_Frame_Del_p.Q906del|NFAT5_uc002exn.1_In_Frame_Del_p.Q905del|NFAT5_uc002exo.1_5'Flank	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	888	Poly-Gln.				excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						ATCTAATcaacagcagcagcagc	0.389													12	279	---	---	---	---					
ZCCHC14	23174	broad.mit.edu	37	16	87445610	87445612	+	In_Frame_Del	DEL	TGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:87445610_87445612delTGG	uc002fjz.1	-	12	2331_2333	c.2304_2306delCCA	c.(2302-2307)CACCAT>CAT	p.768_769HH>H	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_In_Frame_Del_p.544_545HH>H	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	768_769	His-rich.				cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		GGGCTGCtgatggtggtggtggt	0.591													9	236	---	---	---	---					
SPG7	6687	broad.mit.edu	37	16	89613072	89613073	+	Frame_Shift_Ins	INS	-	G	G	rs111475461	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr16:89613072_89613073insG	uc002fnj.2	+	11	1477_1478	c.1456_1457insG	c.(1456-1458)CGGfs	p.R486fs	SPG7_uc002fnk.1_RNA	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	486	Mitochondrial matrix (Potential).		R -> Q.		cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		GCAGGAGAGGCGGGAGATTTTT	0.574													20	915	---	---	---	---					
C17orf85	55421	broad.mit.edu	37	17	3721809	3721811	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:3721809_3721811delTCC	uc010ckl.1	-	10	1079_1081	c.1056_1058delGGA	c.(1054-1059)GAGGAA>GAA	p.352_353EE>E	C17orf85_uc002fwr.2_In_Frame_Del_p.62_63EE>E|C17orf85_uc002fwq.2_In_Frame_Del_p.72_73EE>E	NM_001114118	NP_001107590	Q53F19	CQ085_HUMAN	ELG protein isoform a	352_353	Glu-rich.						nucleotide binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (3;0.0725)		ctcttcctcttcctcctcctcct	0.379													22	341	---	---	---	---					
FXR2	9513	broad.mit.edu	37	17	7495872	7495874	+	In_Frame_Del	DEL	CGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:7495872_7495874delCGG	uc002gia.1	-	15	2000_2002	c.1773_1775delCCG	c.(1771-1776)CGCCGT>CGT	p.591_592RR>R	MPDU1_uc010vuc.1_3'UTR|SOX15_uc002ghy.1_5'Flank|SOX15_uc002ghz.1_5'Flank	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	591_592	Poly-Arg.					cytosolic large ribosomal subunit	protein binding|RNA binding				0				READ - Rectum adenocarcinoma(115;0.17)		ACCACGGTTACGGCGGCGGCGGC	0.547													15	1073	---	---	---	---					
CHD3	1107	broad.mit.edu	37	17	7801857	7801859	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:7801857_7801859delAAG	uc002gje.2	+	13	2245_2247	c.2095_2097delAAG	c.(2095-2097)AAGdel	p.K703del	CHD3_uc002gjd.2_In_Frame_Del_p.K762del|CHD3_uc002gjf.2_In_Frame_Del_p.K703del	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	703	Poly-Lys.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CCGCAAGTATAAGAAGAAGAAGA	0.488													12	235	---	---	---	---					
NUFIP2	57532	broad.mit.edu	37	17	27620932	27620934	+	In_Frame_Del	DEL	TGG	-	-	rs1054145	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:27620932_27620934delTGG	uc002hdy.3	-	1	233_235	c.144_146delCCA	c.(142-147)CACCAT>CAT	p.48_49HH>H	NUFIP2_uc002hdx.3_In_Frame_Del_p.48_49HH>H	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	48_49	His-rich.					nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			Ctggtgatgatggtggtggtggt	0.276													7	800	---	---	---	---					
WNK4	65266	broad.mit.edu	37	17	40939870	40939870	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:40939870delG	uc002ibj.2	+	8	1837	c.1816delG	c.(1816-1818)GGGfs	p.G606fs	WNK4_uc010wgx.1_Frame_Shift_Del_p.G270fs|WNK4_uc002ibk.1_Frame_Shift_Del_p.G378fs|WNK4_uc010wgy.1_Intron	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	606					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		TCAGCCCCCTGGGGGGGTGCC	0.637													7	411	---	---	---	---					
HDAC5	10014	broad.mit.edu	37	17	42157800	42157801	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:42157800_42157801insG	uc002ifd.1	-	22	3004_3005	c.2793_2794insC	c.(2791-2796)CCCATTfs	p.P931fs	HDAC5_uc002ife.1_Frame_Shift_Ins_p.P931fs|HDAC5_uc002iff.1_Frame_Shift_Ins_p.P932fs|HDAC5_uc010czp.1_Frame_Shift_Ins_p.P846fs	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	931_932	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		ACGTCTCCAATGGGGGGGTCCA	0.609													7	565	---	---	---	---					
CCDC103	388389	broad.mit.edu	37	17	42980014	42980015	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:42980014_42980015delAG	uc002iho.2	+	4	641_642	c.558_559delAG	c.(556-561)GCAGAGfs	p.A186fs	CCDC103_uc002ihp.1_5'Flank	NM_213607	NP_998772	Q8IW40	CC103_HUMAN	coiled-coil domain containing 103	186_187										kidney(1)	1		Prostate(33;0.109)				TGAGCCGGGCAGAGAGAGAGAG	0.644													7	238	---	---	---	---					
HOXB2	3212	broad.mit.edu	37	17	46622130	46622132	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:46622130_46622132delAGG	uc002inm.2	-	1	262_264	c.142_144delCCT	c.(142-144)CCTdel	p.P48del		NM_002145	NP_002136	P14652	HXB2_HUMAN	homeobox B2	48					blood circulation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TTTGCTCGAAAGGAGGAGGAGGA	0.542													8	488	---	---	---	---					
COIL	8161	broad.mit.edu	37	17	55028016	55028016	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:55028016delT	uc002iuu.2	-	2	618	c.587delA	c.(586-588)AAGfs	p.K196fs		NM_004645	NP_004636	P38432	COIL_HUMAN	coilin	196	Lys-rich (basic).					Cajal body|nucleolus	protein C-terminus binding			ovary(1)	1	Breast(9;6.15e-08)					ATTCTTAGCCTTTTTTTTATA	0.393													11	471	---	---	---	---					
VEZF1	7716	broad.mit.edu	37	17	56056605	56056607	+	In_Frame_Del	DEL	TGC	-	-	rs61731354	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:56056605_56056607delTGC	uc002ivf.1	-	5	1187_1189	c.1044_1046delGCA	c.(1042-1047)CAGCAA>CAA	p.348_349QQ>Q	VEZF1_uc010dcn.1_In_Frame_Del_p.198_199QQ>Q	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	348_349	Poly-Gln.				cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						ttgttgttgttgctgctgctgct	0.305													7	920	---	---	---	---					
BZRAP1	9256	broad.mit.edu	37	17	56387404	56387406	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:56387404_56387406delTCC	uc002ivx.3	-	21	4684_4686	c.3813_3815delGGA	c.(3811-3816)GAGGAA>GAA	p.1271_1272EE>E	BZRAP1_uc010dcs.2_In_Frame_Del_p.1211_1212EE>E|BZRAP1_uc010wnt.1_In_Frame_Del_p.1271_1272EE>E	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1271_1272	Poly-Glu.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CAGctcctcttcctcctcctcct	0.468													13	345	---	---	---	---					
TEX14	56155	broad.mit.edu	37	17	56692648	56692651	+	Frame_Shift_Del	DEL	GTGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:56692648_56692651delGTGG	uc010dcz.1	-	8	959_962	c.841_844delCCAC	c.(841-846)CCACACfs	p.P281fs	TEX14_uc002iwr.1_Frame_Shift_Del_p.P275fs|TEX14_uc002iws.1_Frame_Shift_Del_p.P275fs|TEX14_uc010dda.1_Frame_Shift_Del_p.P55fs	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	281_282	Protein kinase.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTGCTGCAGTGTGGGTGGGTGGGG	0.559													8	787	---	---	---	---					
ACE	1636	broad.mit.edu	37	17	61560495	61560495	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:61560495delC	uc002jau.1	+	9	1470	c.1448delC	c.(1447-1449)ACCfs	p.T483fs	ACE_uc010wpi.1_Intron|ACE_uc010ddu.1_Frame_Shift_Del_p.T300fs|ACE_uc002jav.1_5'Flank|ACE_uc010ddv.1_5'Flank|ACE_uc010wpj.1_5'Flank|ACE_uc002jaw.1_5'Flank|ACE_uc010wpk.1_5'Flank	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	483	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	AGTGGGCGTACCCCCCCTTCC	0.562													11	1217	---	---	---	---					
FTSJ3	117246	broad.mit.edu	37	17	61899155	61899157	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:61899155_61899157delCTC	uc002jbz.2	-	14	1600_1602	c.1522_1524delGAG	c.(1522-1524)GAGdel	p.E508del	FTSJ3_uc002jca.2_In_Frame_Del_p.E508del	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	508					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						GCAGTGGATTCTCCTCCTCCTCC	0.537													15	831	---	---	---	---					
FTSJ3	117246	broad.mit.edu	37	17	61901501	61901503	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:61901501_61901503delTCC	uc002jbz.2	-	11	1173_1175	c.1095_1097delGGA	c.(1093-1098)GAGGAA>GAA	p.365_366EE>E	FTSJ3_uc002jca.2_In_Frame_Del_p.365_366EE>E	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	365_366					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						GTTCAGTTGTtcctcctcctcct	0.478													9	935	---	---	---	---					
CD300A	11314	broad.mit.edu	37	17	72469711	72469712	+	Frame_Shift_Ins	INS	-	GC	GC			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:72469711_72469712insGC	uc002jkv.2	+	2	398_399	c.77_78insGC	c.(76-78)GGCfs	p.G26fs	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	26	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						ACCGTGGCGGGCCCCGTGGGGG	0.569													10	653	---	---	---	---					
DNAH17	8632	broad.mit.edu	37	17	76506467	76506467	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr17:76506467delT	uc010wtu.1	-	1	287	c.110delA	c.(109-111)AAGfs	p.K37fs						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			ACGGCCTACCTTTTCCATGCC	0.607													7	1480	---	---	---	---					
KIAA0802	23255	broad.mit.edu	37	18	8793004	8793004	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr18:8793004delC	uc002knr.2	+	8	2038	c.1896delC	c.(1894-1896)GGCfs	p.G632fs	KIAA0802_uc002knq.2_Intron|KIAA0802_uc002kns.2_Intron	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0						AGCTCAGGGGCCCCCCCGTTT	0.552													8	1174	---	---	---	---					
MBD3	53615	broad.mit.edu	37	19	1578372	1578374	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:1578372_1578374delCTC	uc002ltl.1	-	6	863_865	c.841_843delGAG	c.(841-843)GAGdel	p.E281del	uc002lti.1_5'Flank|MBD3_uc002ltj.2_In_Frame_Del_p.E281del|MBD3_uc002ltk.2_In_Frame_Del_p.E249del	NM_003926	NP_003917	O95983	MBD3_HUMAN	methyl-CpG binding domain protein 3	281	Poly-Glu.				transcription, DNA-dependent	NuRD complex	DNA binding|protein binding			ovary(1)|pancreas(1)|skin(1)	3		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.179)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGGGTCGGGctcctcctcctcc	0.581													9	86	---	---	---	---					
ECSIT	51295	broad.mit.edu	37	19	11618821	11618821	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:11618821delG	uc002msb.2	-	5	915	c.781delC	c.(781-783)CAGfs	p.Q261fs	ZNF653_uc002mrz.1_5'Flank|ECSIT_uc002msa.1_RNA|ECSIT_uc010dyc.1_Frame_Shift_Del_p.Q261fs|ECSIT_uc010dyd.2_Frame_Shift_Del_p.Q261fs|ECSIT_uc010xma.1_Frame_Shift_Del_p.Q47fs	NM_016581	NP_057665	Q9BQ95	ECSIT_HUMAN	evolutionarily conserved signaling intermediate	261					innate immune response|regulation of oxidoreductase activity	mitochondrion	oxidoreductase activity, acting on NADH or NADPH|protein binding			ovary(1)	1						ATGTGGGGCTGGGGGGGATCT	0.582													7	635	---	---	---	---					
KIAA1683	80726	broad.mit.edu	37	19	18376953	18376953	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:18376953delT	uc002nin.2	-	3	1613	c.1397delA	c.(1396-1398)AACfs	p.N466fs	KIAA1683_uc010ebn.2_Frame_Shift_Del_p.N466fs|KIAA1683_uc010xqe.1_Frame_Shift_Del_p.N420fs	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	466						mitochondrion				ovary(2)	2						TTGCAATGGGTTTTTGGCTGG	0.612													9	575	---	---	---	---					
SPRED3	399473	broad.mit.edu	37	19	38882864	38882866	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:38882864_38882866delCCT	uc002oim.2	+	3	363_365	c.359_361delCCT	c.(358-363)CCCTCC>CCC	p.S128del	SPRED3_uc002oil.1_In_Frame_Del_p.S128del	NM_001042522	NP_001035987	Q2MJR0	SPRE3_HUMAN	sprouty-related, EVH1 domain containing 3	128	Ser-rich.				multicellular organismal development					central_nervous_system(2)|lung(1)|skin(1)	4	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TCACTCAccccctcctcctcctc	0.537													13	136	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	38948159	38948160	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:38948159_38948160delTG	uc002oit.2	+	17	1944_1945	c.1814_1815delTG	c.(1813-1815)CTGfs	p.L605fs	RYR1_uc002oiu.2_Frame_Shift_Del_p.L605fs	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	605	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTATGCTCCCTGTGTGTGTGTA	0.530													10	2360	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	39019604	39019606	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:39019604_39019606delAGG	uc002oit.2	+	76	11178_11180	c.11048_11050delAGG	c.(11047-11052)CAGGAG>CAG	p.E3689del	RYR1_uc002oiu.2_In_Frame_Del_p.E3684del|RYR1_uc002oiv.1_In_Frame_Del_p.E604del|RYR1_uc010xuf.1_In_Frame_Del_p.E609del	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3689					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCTGGggagcaggaggaggagga	0.463													7	119	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	39075696	39075698	+	In_Frame_Del	DEL	CTT	-	-	rs118192171		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:39075696_39075698delCTT	uc002oit.2	+	102	14890_14892	c.14760_14762delCTT	c.(14758-14763)ACCTTC>ACC	p.F4924del	RYR1_uc002oiu.2_In_Frame_Del_p.F4919del	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4924	Helical; Name=M10; (Potential).				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCGACATCACCTTCTTCTTCTTC	0.542													7	410	---	---	---	---					
SERTAD1	29950	broad.mit.edu	37	19	40929409	40929411	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:40929409_40929411delCTC	uc002ont.3	-	2	202_204	c.43_45delGAG	c.(43-45)GAGdel	p.E15del		NM_013376	NP_037508	Q9UHV2	SRTD1_HUMAN	SERTA domain containing 1	15					positive regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GAGGTTCCTTCTCCTCCTCCTCC	0.453													7	337	---	---	---	---					
NKPD1	284353	broad.mit.edu	37	19	45655769	45655771	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:45655769_45655771delCTG	uc010xxi.1	-	4	1924_1926	c.1924_1926delCAG	c.(1924-1926)CAGdel	p.Q642del		NM_198478	NP_940880			NTPase, KAP family P-loop domain containing 1												0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00863)|GBM - Glioblastoma multiforme(486;0.231)		CAAAGTCCCCCTGCTGCTGCTGC	0.704													7	38	---	---	---	---					
MAMSTR	284358	broad.mit.edu	37	19	49218105	49218106	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:49218105_49218106insG	uc002pkg.2	-	6	547_548	c.485_486insC	c.(484-486)CCAfs	p.P162fs	MAMSTR_uc002pkf.2_Frame_Shift_Ins_p.P59fs	NM_001130915	NP_001124387	Q6ZN01	MASTR_HUMAN	MEF2 activating motif and SAP domain containing	162	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			ovary(1)	1						CCAACTTGTGTGGGGGGGGCGA	0.569													7	521	---	---	---	---					
FLT3LG	2323	broad.mit.edu	37	19	49978960	49978962	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:49978960_49978962delCTG	uc010yau.1	+	3	136_138	c.46_48delCTG	c.(46-48)CTGdel	p.L20del	FLT3LG_uc002pnv.2_5'UTR|FLT3LG_uc002pnw.2_5'UTR|FLT3LG_uc002pnu.2_In_Frame_Del_p.L20del|FLT3LG_uc002pnx.2_In_Frame_Del_p.L20del|FLT3LG_uc010yav.1_5'UTR	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	20					positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CTATCTCCTCCTGCTGCTGCTGC	0.621													17	471	---	---	---	---					
LILRB2	10288	broad.mit.edu	37	19	54780707	54780709	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr19:54780707_54780709delGAG	uc002qfb.2	-	10	1701_1703	c.1435_1437delCTC	c.(1435-1437)CTCdel	p.L479del	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_In_Frame_Del_p.L479del|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_In_Frame_Del_p.L478del|LILRB2_uc010yet.1_In_Frame_Del_p.L363del	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	479	Helical; (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ggatgaggaagaggaggaggagg	0.488													14	587	---	---	---	---					
ATP6V1C2	245973	broad.mit.edu	37	2	10917819	10917820	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:10917819_10917820delAG	uc002ras.2	+	11	1043_1044	c.934_935delAG	c.(934-936)AGAfs	p.R312fs	ATP6V1C2_uc002rat.2_Intron	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	312					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		GCAGACCGACAGAGAGAGAGAG	0.604													35	528	---	---	---	---					
PUM2	23369	broad.mit.edu	37	2	20482977	20482979	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:20482977_20482979delGCT	uc002rds.1	-	11	1472_1474	c.1449_1451delAGC	c.(1447-1452)GCAGCT>GCT	p.483_484AA>A	PUM2_uc002rdt.1_In_Frame_Del_p.483_484AA>A|PUM2_uc002rdr.2_In_Frame_Del_p.422_423AA>A|PUM2_uc010yjy.1_In_Frame_Del_p.483_484AA>A|PUM2_uc002rdu.1_In_Frame_Del_p.483_484AA>A|PUM2_uc010yjz.1_In_Frame_Del_p.422_423AA>A	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	483_484	Ala-rich.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGTTCCTCCAGCTGCTGCTGCTG	0.424													11	472	---	---	---	---					
KIF3C	3797	broad.mit.edu	37	2	26203464	26203466	+	In_Frame_Del	DEL	GTT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:26203464_26203466delGTT	uc002rgu.2	-	1	1978_1980	c.1321_1323delAAC	c.(1321-1323)AACdel	p.N441del	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_In_Frame_Del_p.N441del	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	441	Poly-Asn.|Potential.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCGGGCGGTGGTTGTTGTTGTTG	0.621													7	706	---	---	---	---					
GPR113	165082	broad.mit.edu	37	2	26534413	26534413	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:26534413delC	uc002rhe.3	-	11	2183	c.2183delG	c.(2182-2184)GGTfs	p.G728fs	GPR113_uc010yky.1_Frame_Shift_Del_p.G659fs|GPR113_uc002rhb.1_Frame_Shift_Del_p.G331fs|GPR113_uc010eyk.1_Frame_Shift_Del_p.G529fs|GPR113_uc002rhc.1_Frame_Shift_Del_p.G331fs|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	728	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTGGACCAACCCCCCCTGCC	0.612													10	674	---	---	---	---					
STRN	6801	broad.mit.edu	37	2	37113870	37113870	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:37113870delT	uc002rpn.2	-	8	1040	c.1031delA	c.(1030-1032)AAGfs	p.K344fs	STRN_uc010ezx.2_Intron	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	344					dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				CTTCACCCCCTTTTTCCCCTT	0.388													7	668	---	---	---	---					
ITPRIPL1	150771	broad.mit.edu	37	2	96992793	96992795	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:96992793_96992795delGAG	uc002svx.2	+	3	759_761	c.424_426delGAG	c.(424-426)GAGdel	p.E147del	ITPRIPL1_uc010yuk.1_In_Frame_Del_p.E139del|ITPRIPL1_uc002svy.2_In_Frame_Del_p.E155del|ITPRIPL1_uc010yul.1_In_Frame_Del_p.E139del	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	147	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						TTCCAGCAGTGAGGAGGAGGAGG	0.532													8	295	---	---	---	---					
REV1	51455	broad.mit.edu	37	2	100055102	100055102	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:100055102delT	uc002tad.2	-	6	1386	c.1174delA	c.(1174-1176)ATGfs	p.M392fs	REV1_uc002tac.2_Frame_Shift_Del_p.M392fs|REV1_uc002tae.1_Frame_Shift_Del_p.M371fs	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	392					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						CCTGTTTTCATTTTTTTTAAC	0.348								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					10	554	---	---	---	---					
ERCC3	2071	broad.mit.edu	37	2	128046944	128046946	+	In_Frame_Del	DEL	TCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:128046944_128046946delTCT	uc002toh.1	-	6	884_886	c.789_791delAGA	c.(787-792)GAAGAG>GAG	p.263_264EE>E	ERCC3_uc002toe.1_In_Frame_Del_p.18_19EE>E|ERCC3_uc002tof.1_In_Frame_Del_p.199_200EE>E|ERCC3_uc002tog.1_In_Frame_Del_p.199_200EE>E|ERCC3_uc010flx.1_In_Frame_Del_p.18_19EE>E|ERCC3_uc010yzh.1_RNA	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	263_264	Asp/Glu-rich (acidic).				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TGTCTGTGTCTCTTCTTCTTCTT	0.473			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				9	314	---	---	---	---					
ERMN	57471	broad.mit.edu	37	2	158178062	158178064	+	In_Frame_Del	DEL	ATC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:158178062_158178064delATC	uc002tzh.2	-	3	836_838	c.574_576delGAT	c.(574-576)GATdel	p.D192del	ERMN_uc010zcj.1_In_Frame_Del_p.D86del|ERMN_uc010zck.1_In_Frame_Del_p.D172del|ERMN_uc002tzi.2_In_Frame_Del_p.D205del	NM_020711	NP_065762	Q8TAM6	ERMIN_HUMAN	ermin, ERM-like protein isoform b	192	Poly-Asp.					cytoplasm|cytoskeleton				ovary(1)|skin(1)	2						tattgcaattatcatcatcatca	0.305													7	514	---	---	---	---					
SGOL2	151246	broad.mit.edu	37	2	201437004	201437004	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:201437004delT	uc002uvw.2	+	7	2048	c.1935delT	c.(1933-1935)AATfs	p.N645fs	SGOL2_uc010zhd.1_Frame_Shift_Del_p.N645fs|SGOL2_uc010zhe.1_Frame_Shift_Del_p.N645fs	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	645					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						AAAAAGGTAATTTTTTTTTCA	0.333													8	448	---	---	---	---					
AAMP	14	broad.mit.edu	37	2	219134766	219134766	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr2:219134766delG	uc002vhk.2	-	1	128	c.44delC	c.(43-45)CCAfs	p.P15fs	PNKD_uc002vhn.2_5'Flank|AAMP_uc002vhj.2_5'Flank|AAMP_uc010fvo.2_Frame_Shift_Del_p.P15fs|AAMP_uc002vhl.2_Frame_Shift_Del_p.P15fs|PNKD_uc002vhm.1_5'Flank	NM_001087	NP_001078	Q13685	AAMP_HUMAN	angio-associated, migratory cell protein	15					angiogenesis|cell differentiation|positive regulation of endothelial cell migration|smooth muscle cell migration	cell surface|cytoplasm|plasma membrane	heparin binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;7.19e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGTCTCCAGTGGGGGGGTGTC	0.617													8	1787	---	---	---	---					
KIF3B	9371	broad.mit.edu	37	20	30898763	30898765	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr20:30898763_30898765delGAG	uc002wxq.2	+	2	1350_1352	c.1183_1185delGAG	c.(1183-1185)GAGdel	p.E399del	KIF3B_uc010ztv.1_Intron|KIF3B_uc010ztw.1_Intron	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	399	Poly-Glu.|Potential.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGGTGGggaagaggaggaggagg	0.433													8	171	---	---	---	---					
PTTG1IP	754	broad.mit.edu	37	21	46276194	46276196	+	In_Frame_Del	DEL	GCA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr21:46276194_46276196delGCA	uc002zgb.1	-	4	571_573	c.361_363delTGC	c.(361-363)TGCdel	p.C121del	PTTG1IP_uc011afj.1_RNA|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330	P53801	PTTG_HUMAN	pituitary tumor-transforming gene 1	121	Poly-Cys.|Cytoplasmic (Potential).				protein import into nucleus	cytoplasm|integral to membrane|nucleus				ovary(1)	1				Colorectal(79;0.0659)		TCTTCCTCCTGCAGCAGCAGCAG	0.616													23	332	---	---	---	---					
CCT8L2	150160	broad.mit.edu	37	22	17071787	17071787	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:17071787delT	uc002zlp.1	-	1	1914	c.1654delA	c.(1654-1656)ATCfs	p.I552fs		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	552					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AATCCAAGGATTTTTTTTGTT	0.408													7	505	---	---	---	---					
TFIP11	24144	broad.mit.edu	37	22	26906183	26906185	+	In_Frame_Del	DEL	TCA	-	-	rs145794160	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:26906183_26906185delTCA	uc003acr.2	-	3	428_430	c.54_56delTGA	c.(52-57)GATGAC>GAC	p.18_19DD>D	TFIP11_uc003acs.2_In_Frame_Del_p.18_19DD>D|TFIP11_uc003act.2_In_Frame_Del_p.18_19DD>D	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	18_19	Poly-Asp.				biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCCCGCTCGTCATCATCATCAT	0.532													8	400	---	---	---	---					
SF3A1	10291	broad.mit.edu	37	22	30742328	30742330	+	In_Frame_Del	DEL	CTG	-	-	rs141985009	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:30742328_30742330delCTG	uc003ahl.2	-	3	496_498	c.364_366delCAG	c.(364-366)CAGdel	p.Q122del		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	122	Poly-Gln.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						GCTGGGTGGTCTGCTGCTGCTGC	0.596													14	598	---	---	---	---					
C22orf32	91689	broad.mit.edu	37	22	42478046	42478048	+	In_Frame_Del	DEL	GAT	-	-	rs141840500		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:42478046_42478048delGAT	uc003bca.2	+	2	378_380	c.304_306delGAT	c.(304-306)GATdel	p.D107del		NM_033318	NP_201575	Q9H4I9	CV032_HUMAN	hypothetical protein LOC91689 precursor	107	Asp/Glu-rich.					integral to membrane|mitochondrion				ovary(1)	1						TGTTCCAGAGGATGATGATGATG	0.478													8	590	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610573	42610575	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:42610573_42610575delAGG	uc003bcj.1	-	1	871_873	c.737_739delCCT	c.(736-741)TCCTTC>TTC	p.S246del	TCF20_uc003bck.1_In_Frame_Del_p.S246del|TCF20_uc003bnt.2_In_Frame_Del_p.S246del	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	246	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GGTGAAGGGAaggaggaggagga	0.438													13	448	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610776	42610778	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:42610776_42610778delTGC	uc003bcj.1	-	1	668_670	c.534_536delGCA	c.(532-537)CAGCAA>CAA	p.178_179QQ>Q	TCF20_uc003bck.1_In_Frame_Del_p.178_179QQ>Q|TCF20_uc003bnt.2_In_Frame_Del_p.178_179QQ>Q	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	178_179	Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CTGCTGGACTTGCTGCTGCTGCT	0.571													16	349	---	---	---	---					
ARFGAP3	26286	broad.mit.edu	37	22	43213780	43213780	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr22:43213780delT	uc003bdd.2	-	10	1116	c.896delA	c.(895-897)AATfs	p.N299fs	ARFGAP3_uc010gzf.2_Frame_Shift_Del_p.N255fs|ARFGAP3_uc011apu.1_Frame_Shift_Del_p.N227fs	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	299					intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						TGAGTCAACATTTTTTTTGCC	0.224													18	1051	---	---	---	---					
SRGAP3	9901	broad.mit.edu	37	3	9027284	9027286	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:9027284_9027286delGCT	uc003brf.1	-	22	3893_3895	c.3217_3219delAGC	c.(3217-3219)AGCdel	p.S1074del	SRGAP3_uc003brg.1_In_Frame_Del_p.S1050del	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	1074					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CCACGCCCGAGCTGCTGCTGCTG	0.739			T	RAF1	pilocytic astrocytoma								7	174	---	---	---	---					
C3orf31	132001	broad.mit.edu	37	3	11880699	11880699	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:11880699delT	uc003bwh.2	-	3	650	c.408delA	c.(406-408)AAAfs	p.K136fs	C3orf31_uc003bwj.2_Frame_Shift_Del_p.K136fs|C3orf31_uc003bwi.2_RNA|C3orf31_uc011auo.1_Frame_Shift_Del_p.K136fs|C3orf31_uc011aup.1_RNA|C3orf31_uc010hdy.1_RNA	NM_138807	NP_620162	Q96BW9	MMP37_HUMAN	MMP37-like protein, mitochondrial precursor	136					protein import into mitochondrial matrix	extrinsic to mitochondrial inner membrane					0						caCTCACCGGTTTTTGGAGTC	0.209													9	451	---	---	---	---					
DLEC1	9940	broad.mit.edu	37	3	38162039	38162040	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:38162039_38162040delGA	uc003cho.1	+	34	4826_4827	c.4805_4806delGA	c.(4804-4806)GGAfs	p.G1602fs	DLEC1_uc003chp.1_Frame_Shift_Del_p.G1602fs|DLEC1_uc010hgv.1_Frame_Shift_Del_p.G1605fs|DLEC1_uc003chr.1_Frame_Shift_Del_p.G673fs|DLEC1_uc003chs.1_Frame_Shift_Del_p.G159fs	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1602					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		AGTGCGAGTGGAGAGAGAGAGA	0.579													7	462	---	---	---	---					
HHATL	57467	broad.mit.edu	37	3	42739670	42739672	+	In_Frame_Del	DEL	GAA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:42739670_42739672delGAA	uc003clw.2	-	7	802_804	c.655_657delTTC	c.(655-657)TTCdel	p.F219del	HHATL_uc003clx.2_In_Frame_Del_p.F219del	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	219					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		TGATGGGCCCGAAGAAGAAGAAG	0.552													10	586	---	---	---	---					
CACNA1D	776	broad.mit.edu	37	3	53785830	53785830	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:53785830delA	uc003dgv.3	+	28	3734	c.3571delA	c.(3571-3573)AAAfs	p.K1191fs	CACNA1D_uc003dgu.3_Frame_Shift_Del_p.K1211fs|CACNA1D_uc003dgy.3_Frame_Shift_Del_p.K1191fs|CACNA1D_uc003dgw.3_Frame_Shift_Del_p.K858fs|CACNA1D_uc003dgx.1_Frame_Shift_Del_p.K339fs	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1191	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	ATACATCCCCAAAAACCCCTA	0.498													7	1067	---	---	---	---					
ERC2	26059	broad.mit.edu	37	3	55733470	55733472	+	In_Frame_Del	DEL	TGG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:55733470_55733472delTGG	uc003dhr.1	-	16	3037_3039	c.2781_2783delCCA	c.(2779-2784)CACCAT>CAT	p.927_928HH>H	ERC2_uc003dhq.1_RNA	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	927_928	Poly-His.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		gtggtggtgatggtggtggtggt	0.389													9	1513	---	---	---	---					
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:100148586_100148588delGAT	uc003dtx.3	+	2	1293_1295	c.13_15delGAT	c.(13-15)GATdel	p.D10del	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	10	Poly-Asp.										0						GGAGCACAAAGATGATGATGATG	0.507													9	1402	---	---	---	---					
KIAA2018	205717	broad.mit.edu	37	3	113380090	113380090	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:113380090delT	uc003eam.2	-	7	850	c.439delA	c.(439-441)ATTfs	p.I147fs	KIAA2018_uc003eal.2_Frame_Shift_Del_p.I91fs	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	147					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TAAACAATAATTTTTTTTTGA	0.373													11	470	---	---	---	---					
TMCC1	23023	broad.mit.edu	37	3	129546680	129546682	+	In_Frame_Del	DEL	GCA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:129546680_129546682delGCA	uc003emz.3	-	4	1041_1043	c.540_542delTGC	c.(538-543)GCTGCA>GCA	p.180_181AA>A	TMCC1_uc010htg.2_In_Frame_Del_p.66_67AA>A	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	180_181						integral to membrane				skin(1)	1						TGGTAGACATgcagcagcagcag	0.404													9	239	---	---	---	---					
FAM194A	131831	broad.mit.edu	37	3	150421591	150421593	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:150421591_150421593delTCC	uc003eyg.2	-	1	150_152	c.93_95delGGA	c.(91-96)GAGGAA>GAA	p.31_32EE>E	FAM194A_uc003eyh.2_5'UTR	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	31_32	Glu-rich.									skin(2)|ovary(1)	3						ctccacctcttcctcctcctcct	0.232													9	88	---	---	---	---					
FXR1	8087	broad.mit.edu	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr3:180666228delA	uc003fkq.2	+	5	386	c.364delA	c.(364-366)AAAfs	p.K122fs	FXR1_uc003fkp.2_Frame_Shift_Del_p.K37fs|FXR1_uc003fkr.2_Frame_Shift_Del_p.K122fs|FXR1_uc011bqj.1_Frame_Shift_Del_p.K36fs|FXR1_uc003fks.2_Frame_Shift_Del_p.K36fs|FXR1_uc011bqk.1_Frame_Shift_Del_p.K73fs|FXR1_uc011bql.1_Frame_Shift_Del_p.K109fs	NM_005087	NP_005078	P51114	FXR1_HUMAN	fragile X mental retardation-related protein 1	122					apoptosis|cell differentiation|muscle organ development	nucleolus|polysome				breast(1)	1	all_cancers(143;6.07e-14)|Ovarian(172;0.0212)		Epithelial(37;3.05e-35)|OV - Ovarian serous cystadenocarcinoma(80;2.4e-22)			TAAAACTGTCAAAAAAAATAC	0.333													8	338	---	---	---	---					
FGFRL1	53834	broad.mit.edu	37	4	1019055	1019056	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:1019055_1019056delCA	uc003gce.2	+	7	1596_1597	c.1435_1436delCA	c.(1435-1437)CACfs	p.H479fs	FGFRL1_uc003gcf.2_Frame_Shift_Del_p.H479fs|FGFRL1_uc003gcg.2_Frame_Shift_Del_p.H479fs|FGFRL1_uc010ibo.2_Frame_Shift_Del_p.H479fs	NM_021923	NP_068742	Q8N441	FGRL1_HUMAN	fibroblast growth factor receptor-like 1	479	His-rich.|Cytoplasmic (Potential).				regulation of cell growth	integral to membrane|plasma membrane	fibroblast growth factor receptor activity|heparin binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			cacagacatccacacacacaca	0.460													8	34	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1389392	1389393	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:1389392_1389393delCA	uc003gdf.2	+	1	4053_4054	c.1093_1094delCA	c.(1093-1095)CACfs	p.H365fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	365					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACACGTGCC	0.658													7	1881	---	---	---	---					
PROM1	8842	broad.mit.edu	37	4	15995680	15995680	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:15995680delT	uc003goo.2	-	15	1909	c.1697delA	c.(1696-1698)AATfs	p.N566fs	PROM1_uc003gor.2_Frame_Shift_Del_p.N566fs|PROM1_uc003gos.2_Frame_Shift_Del_p.N557fs|PROM1_uc003got.2_Frame_Shift_Del_p.N566fs|PROM1_uc003gou.2_Frame_Shift_Del_p.N557fs|PROM1_uc003gop.2_Frame_Shift_Del_p.N557fs|PROM1_uc003goq.3_Frame_Shift_Del_p.N557fs	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	566	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						AGTGCCTCTATTTTTTTTGCA	0.428													17	443	---	---	---	---					
LIAS	11019	broad.mit.edu	37	4	39462464	39462464	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:39462464delA	uc003guf.2	+	2	173	c.100delA	c.(100-102)AAAfs	p.K34fs	RPL9_uc003gub.2_5'Flank|RPL9_uc003guc.2_5'Flank|RPL9_uc011byk.1_5'Flank|RPL9_uc011byl.1_5'Flank|RPL9_uc003gud.1_5'Flank|LIAS_uc003gue.3_Frame_Shift_Del_p.K34fs|LIAS_uc011bym.1_Frame_Shift_Del_p.K34fs|LIAS_uc003gug.2_Frame_Shift_Del_p.K34fs|LIAS_uc003guh.2_Frame_Shift_Del_p.K34fs	NM_006859	NP_006850	O43766	LIAS_HUMAN	lipoic acid synthetase isoform 1 precursor	34					inflammatory response|response to lipopolysaccharide|response to oxidative stress	mitochondrion	4 iron, 4 sulfur cluster binding|lipoate synthase activity|metal ion binding				0					Lipoic Acid(DB00166)	CTTGCCAGATAAAAAAAAGGA	0.393													9	587	---	---	---	---					
CLOCK	9575	broad.mit.edu	37	4	56304530	56304532	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:56304530_56304532delCTG	uc003haz.1	-	23	3204_3206	c.2278_2280delCAG	c.(2278-2280)CAGdel	p.Q760del	CLOCK_uc003hba.1_In_Frame_Del_p.Q760del|CLOCK_uc010igu.1_RNA	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	760	Gln-rich.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			cctgggagctctgctgctgctgc	0.315													11	212	---	---	---	---					
YTHDC1	91746	broad.mit.edu	37	4	69202891	69202893	+	In_Frame_Del	DEL	TCC	-	-	rs141105019		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:69202891_69202893delTCC	uc003hdx.2	-	4	1088_1090	c.735_737delGGA	c.(733-738)GAGGAA>GAA	p.245_246EE>E	YTHDC1_uc003hdy.2_In_Frame_Del_p.245_246EE>E	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	245_246	Glu-rich.									upper_aerodigestive_tract(1)|ovary(1)	2						ttcttcttcttcctcctcctcct	0.202													7	250	---	---	---	---					
NPFFR2	10886	broad.mit.edu	37	4	73012716	73012716	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:73012716delT	uc003hgg.2	+	4	854	c.756delT	c.(754-756)CCTfs	p.P252fs	NPFFR2_uc010iig.1_Frame_Shift_Del_p.P34fs|NPFFR2_uc003hgi.2_Frame_Shift_Del_p.P153fs|NPFFR2_uc003hgh.2_Frame_Shift_Del_p.P150fs|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	252	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			TGGTCTACCCTTTTAAACCAA	0.383													8	1247	---	---	---	---					
CDKL2	8999	broad.mit.edu	37	4	76539579	76539580	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:76539579_76539580insT	uc003hiq.2	-	3	747_748	c.222_223insA	c.(220-225)AAACGAfs	p.K74fs	CDKL2_uc011cbp.1_Frame_Shift_Ins_p.K74fs|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	74_75	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			AGGTACCATCGTTTTTTTTTCT	0.322													14	250	---	---	---	---					
PRDM8	56978	broad.mit.edu	37	4	81123250	81123252	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:81123250_81123252delCAG	uc010ijo.2	+	8	1473_1475	c.634_636delCAG	c.(634-636)CAGdel	p.Q217del	PRDM8_uc003hmb.3_In_Frame_Del_p.Q217del|PRDM8_uc003hmc.3_In_Frame_Del_p.Q217del	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	217	Gly-rich.|Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						tggcaaagaccagcagcagcagc	0.384											OREG0016246	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	123	---	---	---	---					
WDFY3	23001	broad.mit.edu	37	4	85611708	85611709	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:85611708_85611709delCA	uc003hpd.2	-	61	9721_9722	c.9313_9314delTG	c.(9313-9315)TGGfs	p.W3105fs		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	3105	WD 1.					cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GCCCATCTCCCACACACACACA	0.510													7	535	---	---	---	---					
MMRN1	22915	broad.mit.edu	37	4	90844391	90844393	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:90844391_90844393delAGC	uc003hst.2	+	4	994_996	c.923_925delAGC	c.(922-927)GAGCAG>GAG	p.Q313del	MMRN1_uc010iku.2_In_Frame_Del_p.Q279del|MMRN1_uc011cds.1_In_Frame_Del_p.Q55del	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	313	Poly-Gln.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GGAGTAGCTGAGCAGCAGCAGCA	0.448													13	1597	---	---	---	---					
SLC39A8	64116	broad.mit.edu	37	4	103189225	103189225	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:103189225delT	uc003hwb.1	-	6	1381	c.852delA	c.(850-852)AAAfs	p.K284fs	SLC39A8_uc011ceo.1_Frame_Shift_Del_p.K284fs|SLC39A8_uc003hwa.1_Frame_Shift_Del_p.K217fs|SLC39A8_uc003hwc.2_Frame_Shift_Del_p.K284fs	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	284	Extracellular (Potential).					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		AACTTGGCTCTTTTTTTCCAT	0.413													7	400	---	---	---	---					
OTUD4	54726	broad.mit.edu	37	4	146077123	146077125	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr4:146077123_146077125delCAG	uc003ika.3	-	8	596_598	c.458_460delCTG	c.(457-462)GCTGAT>GAT	p.A153del	OTUD4_uc003ijz.3_In_Frame_Del_p.A153del	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	218							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					CCATTCACATCAGCAGCAGCAGC	0.340													14	502	---	---	---	---					
PAPD7	11044	broad.mit.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:6755013_6755014delAC	uc003jdx.1	+	13	1713_1714	c.1584_1585delAC	c.(1582-1587)AAACACfs	p.K528fs	PAPD7_uc011cmn.1_Frame_Shift_Del_p.K518fs|PAPD7_uc010itl.1_Frame_Shift_Del_p.K348fs	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	528_529					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						GGAGGAAAAAACACACACACAC	0.653													10	338	---	---	---	---					
EGR1	1958	broad.mit.edu	37	5	137803132	137803132	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:137803132delC	uc003ldb.1	+	2	1264	c.994delC	c.(994-996)CCCfs	p.P332fs	EGR1_uc011cyu.1_Intron	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	332					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CAGCAAGACGCCCCCCCACGA	0.652													7	708	---	---	---	---					
UNC5A	90249	broad.mit.edu	37	5	176301302	176301304	+	In_Frame_Del	DEL	CAC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr5:176301302_176301304delCAC	uc003mey.2	+	8	1305_1307	c.1113_1115delCAC	c.(1111-1116)AGCACC>AGC	p.T376del	UNC5A_uc010jkg.1_In_Frame_Del_p.T336del	NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	376	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CGGACCTCAGCACCACCACCACC	0.645													7	544	---	---	---	---					
PPP1R10	5514	broad.mit.edu	37	6	30572794	30572795	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:30572794_30572795insT	uc003nqn.1	-	11	1482_1483	c.930_931insA	c.(928-933)AAAGTAfs	p.K310fs	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	310_311	Interaction with TOX4 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GGTGACAGTACTTTTTTTTTCT	0.446													8	221	---	---	---	---					
CDSN	1041	broad.mit.edu	37	6	31084964	31084966	+	In_Frame_Del	DEL	TTT	-	-	rs113541372		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:31084964_31084966delTTT	uc003nsm.1	-	2	453_455	c.426_428delAAA	c.(424-429)GGAAGC>GGC	p.S144del	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	144	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						AGAGCCGCTGTTTCCCGAGTGAG	0.586													10	160	---	---	---	---					
BAT2	7916	broad.mit.edu	37	6	31597338	31597340	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:31597338_31597340delAGC	uc003nvb.3	+	14	2219_2221	c.1970_1972delAGC	c.(1969-1974)AAGCAG>AAG	p.Q661del	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_In_Frame_Del_p.Q661del	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	661	Poly-Gln.|4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CAGCTCCTGAagcagcagcagca	0.453													7	639	---	---	---	---					
RING1	6015	broad.mit.edu	37	6	33178989	33178990	+	Frame_Shift_Ins	INS	-	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:33178989_33178990insG	uc003odk.2	+	5	704_705	c.510_511insG	c.(508-513)AGTGGGfs	p.S170fs	RING1_uc011dqx.1_Frame_Shift_Ins_p.S170fs|RING1_uc003odl.2_Frame_Shift_Ins_p.S141fs	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	170_171	Necessary for transcriptional repression (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CAACGATGAGTGGGGGGGAAGG	0.619													8	788	---	---	---	---					
TULP1	7287	broad.mit.edu	37	6	35478775	35478777	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:35478775_35478777delTCC	uc003okv.3	-	5	372_374	c.360_362delGGA	c.(358-363)GAGGAA>GAA	p.120_121EE>E	TULP1_uc003okw.3_In_Frame_Del_p.67_68EE>E	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	120_121	Poly-Glu.		Missing (in RP14).		dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						gtcctcctcttcctcctcctcct	0.389													11	372	---	---	---	---					
TREML2	79865	broad.mit.edu	37	6	41168714	41168716	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:41168714_41168716delCAG	uc010jxm.1	-	1	210_212	c.31_33delCTG	c.(31-33)CTGdel	p.L11del		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	11					T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCTGTGGCCACAGCAGCAGCAGC	0.631													15	165	---	---	---	---					
AARS2	57505	broad.mit.edu	37	6	44269193	44269193	+	Frame_Shift_Del	DEL	C	-	-	rs498512	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:44269193delC	uc010jza.1	-	20	2610	c.2607delG	c.(2605-2607)AAGfs	p.K869fs	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	869					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	CCTGAGTTTTCTTTGCAGCCT	0.572													7	506	---	---	---	---					
ZBTB24	9841	broad.mit.edu	37	6	109802729	109802729	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:109802729delT	uc003ptl.1	-	2	669	c.501delA	c.(499-501)AAAfs	p.K167fs	ZBTB24_uc011ear.1_RNA|ZBTB24_uc010kds.1_Frame_Shift_Del_p.K167fs|ZBTB24_uc010kdt.1_RNA|ZBTB24_uc003ptm.2_Frame_Shift_Del_p.K167fs	NM_014797	NP_055612	O43167	ZBT24_HUMAN	zinc finger and BTB domain containing 24 isoform	167	A.T hook.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		ATGTATTGACTTTTTTTGGTC	0.418													9	1000	---	---	---	---					
GRM1	2911	broad.mit.edu	37	6	146755630	146755632	+	In_Frame_Del	DEL	GAC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:146755630_146755632delGAC	uc010khw.1	+	9	3753_3755	c.3283_3285delGAC	c.(3283-3285)GACdel	p.D1099del	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1099	Asp/Glu-rich (acidic).|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCCGCCCGCGGACGACGACGACG	0.650													11	506	---	---	---	---					
MAP3K4	4216	broad.mit.edu	37	6	161469776	161469776	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr6:161469776delA	uc003qtn.2	+	3	614	c.472delA	c.(472-474)AAAfs	p.K158fs	MAP3K4_uc010kkc.1_Frame_Shift_Del_p.K158fs|MAP3K4_uc003qto.2_Frame_Shift_Del_p.K158fs|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_5'UTR	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	158					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		GCGTGATCGTAAAAAAAATGT	0.403													9	548	---	---	---	---					
PHF14	9678	broad.mit.edu	37	7	11075380	11075381	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:11075380_11075381delAG	uc003sry.1	+	8	2004_2005	c.1569_1570delAG	c.(1567-1572)CAAGAGfs	p.Q523fs	PHF14_uc011jxi.1_Frame_Shift_Del_p.Q238fs|PHF14_uc003srz.2_Frame_Shift_Del_p.Q523fs|PHF14_uc011jxj.1_Frame_Shift_Del_p.Q238fs	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	523_524							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		TGTCTTTGCAAGAGAGAGAGAA	0.376													11	998	---	---	---	---					
HOXA1	3198	broad.mit.edu	37	7	27135314	27135316	+	In_Frame_Del	DEL	CGA	-	-	rs10951154	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:27135314_27135316delCGA	uc003sye.2	-	1	310_312	c.216_218delTCG	c.(214-219)CATCAC>CAC	p.72_73HH>H	HOXA1_uc003syd.2_In_Frame_Del_p.72_73HH>H|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	72_73	Poly-His.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						Ctgggggtggcgatggtggtggt	0.527											OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	10	256	---	---	---	---					
HOXA11	3207	broad.mit.edu	37	7	27222461	27222462	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:27222461_27222462insT	uc003syx.2	-	2	967_968	c.895_896insA	c.(895-897)ATTfs	p.I299fs	HOXA10_uc003syw.3_5'Flank|HOXA11_uc003syy.2_RNA|HOXA11AS_uc003syz.1_5'Flank	NM_005523	NP_005514	P31270	HXA11_HUMAN	homeobox A11	299	Homeobox.				branching involved in ureteric bud morphogenesis|cartilage development involved in endochondral bone morphogenesis|developmental growth|dorsal/ventral pattern formation|mesodermal cell fate specification|positive regulation of cell development|positive regulation of chondrocyte differentiation	protein-DNA complex|transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)	2						GTCTCTGTTAATTTTTTTTTCC	0.446			T	NUP98	CML								11	511	---	---	---	---					
DTX2	113878	broad.mit.edu	37	7	76112249	76112249	+	Frame_Shift_Del	DEL	A	-	-	rs147779783	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:76112249delA	uc003uff.3	+	5	1249	c.693delA	c.(691-693)CCAfs	p.P231fs	DTX2_uc011kgk.1_Frame_Shift_Del_p.P140fs|DTX2_uc003ufg.3_Frame_Shift_Del_p.P231fs|DTX2_uc003ufh.3_Frame_Shift_Del_p.P231fs|DTX2_uc003ufj.3_Frame_Shift_Del_p.P231fs	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	231					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						AGCACCCCCCACACAGGACCG	0.657													17	1626	---	---	---	---					
RSBN1L	222194	broad.mit.edu	37	7	77326220	77326222	+	In_Frame_Del	DEL	CCG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:77326220_77326222delCCG	uc010ldt.1	+	1	478_480	c.434_436delCCG	c.(433-438)CCCGCC>CCC	p.A151del	RSBN1L_uc003ugm.2_5'Flank|uc003ugj.1_RNA	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	151	Poly-Ala.					nucleus				ovary(1)	1						CTCCTCCTGCCCGCCGCCGCCGC	0.685													7	122	---	---	---	---					
PHTF2	57157	broad.mit.edu	37	7	77569581	77569581	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:77569581delT	uc003ugs.3	+	13	1828	c.1702delT	c.(1702-1704)TTTfs	p.F568fs	PHTF2_uc003ugp.2_Frame_Shift_Del_p.F530fs|PHTF2_uc003ugq.3_Frame_Shift_Del_p.F530fs|PHTF2_uc010ldv.2_Frame_Shift_Del_p.F530fs|PHTF2_uc003ugt.3_Frame_Shift_Del_p.F534fs|PHTF2_uc003ugu.3_Frame_Shift_Del_p.F530fs|PHTF2_uc010ldw.1_Frame_Shift_Del_p.F350fs	NM_001127357	NP_001120829	Q8N3S3	PHTF2_HUMAN	putative homeodomain transcription factor 2	568					regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum|nucleus	DNA binding			ovary(1)	1						GTGGATTTTCTTTTTTTTGCT	0.303													8	575	---	---	---	---					
AKAP9	10142	broad.mit.edu	37	7	91671392	91671393	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:91671392_91671393delAG	uc003ulg.2	+	19	5175_5176	c.4950_4951delAG	c.(4948-4953)TCAGAGfs	p.S1650fs	AKAP9_uc003ulf.2_Frame_Shift_Del_p.S1650fs|AKAP9_uc003uli.2_Frame_Shift_Del_p.S1275fs	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1662_1663					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			ACCTGGTTTCAGAGAGAGAGAG	0.411			T	BRAF	papillary thyroid								7	207	---	---	---	---					
CYP51A1	1595	broad.mit.edu	37	7	91752494	91752494	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:91752494delT	uc003ulm.3	-	7	1188	c.1026delA	c.(1024-1026)AAAfs	p.K342fs	CYP51A1_uc011khn.1_Frame_Shift_Del_p.K237fs|CYP51A1_uc003uln.3_Frame_Shift_Del_p.K279fs	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	336					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	CTAAATAACATTTTTTTTGAA	0.398													7	672	---	---	---	---					
PTCD1	26024	broad.mit.edu	37	7	99032605	99032607	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:99032605_99032607delCTC	uc003uqh.2	-	2	390_392	c.259_261delGAG	c.(259-261)GAGdel	p.E87del	PTCD1_uc011kiw.1_In_Frame_Del_p.E136del	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	87										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			TCCCAAAACTCTCCTCCTCCTCC	0.606													15	635	---	---	---	---					
MEPCE	56257	broad.mit.edu	37	7	100028452	100028454	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:100028452_100028454delCAG	uc003uuw.2	+	1	924_926	c.811_813delCAG	c.(811-813)CAGdel	p.Q274del	ZCWPW1_uc003uut.2_5'Flank|ZCWPW1_uc011kjr.1_5'Flank|ZCWPW1_uc003uuu.1_5'Flank|ZCWPW1_uc011kjt.1_5'Flank|ZCWPW1_uc011kju.1_5'Flank|MEPCE_uc003uuv.2_5'UTR	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	274							methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ACAGCACCACCAGCAGCAGCAGG	0.650													8	977	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100284335	100284337	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:100284335_100284337delCCT	uc003uwg.1	-	7	1638_1640	c.629_631delAGG	c.(628-633)GAGGGC>GGC	p.E210del		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	210	Poly-Glu.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTCCAGCTGCcctcctcctcctc	0.616													9	184	---	---	---	---					
DNAJC2	27000	broad.mit.edu	37	7	102964992	102964992	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:102964992delT	uc003vbo.2	-	6	841	c.590delA	c.(589-591)AATfs	p.N197fs	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_Translation_Start_Site|DNAJC2_uc010lix.2_Frame_Shift_Del_p.N197fs|DNAJC2_uc003vbp.2_Translation_Start_Site|DNAJC2_uc003vbq.1_RNA	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	197	ZRF1-UBD.				'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TTTAGGAACATTTTTTTTATT	0.234													9	448	---	---	---	---					
FOXP2	93986	broad.mit.edu	37	7	114270016	114270018	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:114270016_114270018delCAG	uc003vhb.2	+	5	927_929	c.553_555delCAG	c.(553-555)CAGdel	p.Q191del	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_In_Frame_Del_p.Q216del|FOXP2_uc003vha.2_In_Frame_Del_p.Q99del|FOXP2_uc011kmu.1_In_Frame_Del_p.Q208del|FOXP2_uc011kmv.1_In_Frame_Del_p.Q191del|FOXP2_uc010ljz.1_In_Frame_Del_p.Q99del|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_In_Frame_Del_p.Q191del|FOXP2_uc003vgx.2_In_Frame_Del_p.Q191del|FOXP2_uc003vhd.2_In_Frame_Del_p.Q191del|FOXP2_uc003vhc.2_In_Frame_Del_p.Q216del	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	191	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						gcagcagcaacagcagcagcagc	0.172													7	241	---	---	---	---					
EPHB6	2051	broad.mit.edu	37	7	142561448	142561448	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:142561448delG	uc011kst.1	+	6	947	c.160delG	c.(160-162)GGGfs	p.G54fs	EPHB6_uc011ksu.1_Frame_Shift_Del_p.G54fs|EPHB6_uc003wbs.2_Intron|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Intron	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	54	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CTACCCACCAGGGGGGGTGAG	0.572													7	585	---	---	---	---					
RBM33	155435	broad.mit.edu	37	7	155531073	155531074	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr7:155531073_155531074delCA	uc010lqk.1	+	11	2081_2082	c.1713_1714delCA	c.(1711-1716)CCCACAfs	p.P571fs	RBM33_uc011kvv.1_Frame_Shift_Del_p.P380fs	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	571_572	Pro-rich.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		CGTTTCTGCCCACACACACACA	0.530													17	356	---	---	---	---					
DLC1	10395	broad.mit.edu	37	8	12957611	12957613	+	In_Frame_Del	DEL	GCT	-	-	rs137989738		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:12957611_12957613delGCT	uc003wwm.2	-	9	2677_2679	c.2233_2235delAGC	c.(2233-2235)AGCdel	p.S745del	DLC1_uc003wwk.1_In_Frame_Del_p.S308del|DLC1_uc003wwl.1_In_Frame_Del_p.S342del|DLC1_uc011kxx.1_In_Frame_Del_p.S234del	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	745	Poly-Ser.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TCTCCGACTGGCTGCTGCTGCTG	0.621													10	278	---	---	---	---					
EPB49	2039	broad.mit.edu	37	8	21926552	21926552	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:21926552delC	uc011kyt.1	+	5	504	c.275delC	c.(274-276)TCCfs	p.S92fs	EPB49_uc010ltl.2_Frame_Shift_Del_p.S92fs|EPB49_uc011kys.1_Intron|EPB49_uc010ltn.2_Frame_Shift_Del_p.S67fs|EPB49_uc011kyu.1_Frame_Shift_Del_p.S92fs|EPB49_uc011kyv.1_Frame_Shift_Del_p.S92fs|EPB49_uc010ltq.2_Frame_Shift_Del_p.S92fs	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	92					actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		AAATCCACATCCCCCCCACCA	0.602													7	731	---	---	---	---					
KIAA1967	57805	broad.mit.edu	37	8	22472975	22472975	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:22472975delC	uc003xch.2	+	12	1380	c.1243delC	c.(1243-1245)CCCfs	p.P415fs	KIAA1967_uc003xci.2_Frame_Shift_Del_p.P415fs|KIAA1967_uc003xcj.1_Frame_Shift_Del_p.P84fs	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	415					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		GCAGCCGGGACCCCCCCGGCG	0.582													8	706	---	---	---	---					
C8orf80	389643	broad.mit.edu	37	8	27888776	27888776	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:27888776delT	uc003xgm.3	-	15	2035	c.1892delA	c.(1891-1893)AATfs	p.N631fs		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	631						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GATCAGGAAATTTTTTTTGCA	0.453													15	1051	---	---	---	---					
WRN	7486	broad.mit.edu	37	8	30945377	30945379	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:30945377_30945379delAAG	uc003xio.3	+	12	2305_2307	c.1517_1519delAAG	c.(1516-1521)AAAGAA>AAA	p.E510del	WRN_uc011lbe.1_In_Frame_Del_p.E38del|WRN_uc010lvk.2_5'UTR	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	510	Poly-Glu.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		CTTCCTACTAaagaagaagaaga	0.266			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				11	324	---	---	---	---					
PXDNL	137902	broad.mit.edu	37	8	52359596	52359596	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:52359596delT	uc003xqu.3	-	12	1594	c.1493delA	c.(1492-1494)AAGfs	p.K498fs		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	498	Ig-like C2-type 3.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CACAGACACCTTTTTCACCCC	0.448													9	1295	---	---	---	---					
TMEM55A	55529	broad.mit.edu	37	8	92032481	92032481	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:92032481delT	uc003yes.2	-	3	492	c.266delA	c.(265-267)AACfs	p.N89fs		NM_018710	NP_061180	Q8N4L2	TM55A_HUMAN	transmembrane protein 55A	89						integral to membrane|late endosome membrane|lysosomal membrane	hydrolase activity				0			BRCA - Breast invasive adenocarcinoma(11;0.033)			TGTTGGGGGGTTTTTGATTGG	0.393													10	528	---	---	---	---					
RGS22	26166	broad.mit.edu	37	8	101076179	101076181	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:101076179_101076181delCTT	uc003yjb.1	-	8	1010_1012	c.815_817delAAG	c.(814-819)GAAGGA>GGA	p.E272del	RGS22_uc003yja.1_In_Frame_Del_p.E91del|RGS22_uc003yjc.1_In_Frame_Del_p.E260del|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	272	Poly-Glu.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			tcttcttctccttcttcttcttc	0.325													7	763	---	---	---	---					
PABPC1	26986	broad.mit.edu	37	8	101721933	101721933	+	Frame_Shift_Del	DEL	T	-	-	rs112966887		TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:101721933delT	uc003yjs.1	-	8	1503	c.999delA	c.(997-999)AAAfs	p.K333fs	PABPC1_uc011lhc.1_Frame_Shift_Del_p.K301fs|PABPC1_uc011lhd.1_Frame_Shift_Del_p.K288fs|PABPC1_uc003yjt.1_Frame_Shift_Del_p.K330fs|PABPC1_uc003yju.2_RNA	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	333	RRM 4.				mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			AACCAAACCCTTTGCTGCGAC	0.383													15	234	---	---	---	---					
CPSF1	29894	broad.mit.edu	37	8	145621958	145621959	+	Splice_Site	INS	-	G	G			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr8:145621958_145621959insG	uc003zcj.2	-	25	2758	c.2683_splice	c.e25-1	p.V895_splice		NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,						mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			GTGAGGGACCTGGGGGGGAACC	0.644													7	720	---	---	---	---					
PTPLAD2	401494	broad.mit.edu	37	9	21007045	21007046	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:21007045_21007046insT	uc010miq.1	-	7	735_736	c.689_690insA	c.(688-690)AAGfs	p.K230fs	PTPLAD2_uc003zoj.1_Frame_Shift_Ins_p.K193fs|PTPLAD2_uc010mir.1_Frame_Shift_Ins_p.K230fs	NM_001010915	NP_001010915	Q5VWC8	HACD4_HUMAN	protein tyrosine phosphatase-like A domain	230	Cytoplasmic (Potential).|Poly-Lys.				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	lyase activity			skin(1)	1				Lung(24;6.02e-14)|LUSC - Lung squamous cell carcinoma(38;1.29e-10)		TTCACATCTTCTTTTTTTTAAT	0.371													11	434	---	---	---	---					
ANKRD19	138649	broad.mit.edu	37	9	95599088	95599089	+	RNA	DEL	CA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:95599088_95599089delCA	uc004ass.2	+	9		c.1172_1173delCA			ANKRD19_uc004asr.3_RNA	NR_026868				Homo sapiens cDNA FLJ36178 fis, clone TESTI2026534.												0						TTCACGGGCGCACACACACACA	0.376													7	253	---	---	---	---					
DAB2IP	153090	broad.mit.edu	37	9	124522389	124522391	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:124522389_124522391delAAG	uc004bln.2	+	6	826_828	c.757_759delAAG	c.(757-759)AAGdel	p.K257del	DAB2IP_uc004blo.2_In_Frame_Del_p.K161del	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	285	C2.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						GGAGACCGACAAGAAGAAGAAGA	0.601													7	362	---	---	---	---					
GRIN1	2902	broad.mit.edu	37	9	140056884	140056886	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chr9:140056884_140056886delGAG	uc004clk.2	+	13	2110_2112	c.1780_1782delGAG	c.(1780-1782)GAGdel	p.E598del	GRIN1_uc004cli.1_In_Frame_Del_p.E273del|GRIN1_uc004clj.1_In_Frame_Del_p.E595del|GRIN1_uc004cll.2_In_Frame_Del_p.E598del|GRIN1_uc004clm.2_In_Frame_Del_p.E598del|GRIN1_uc004cln.2_In_Frame_Del_p.E616del|GRIN1_uc004clo.2_In_Frame_Del_p.E616del	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	598	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	GGTGAACAGCGAGGAGGAGGAGG	0.739													10	236	---	---	---	---					
ARMCX3	51566	broad.mit.edu	37	X	100880152	100880154	+	In_Frame_Del	DEL	TGA	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:100880152_100880154delTGA	uc004ehz.1	+	5	716_718	c.183_185delTGA	c.(181-186)TCTGAT>TCT	p.D66del	ARMCX3_uc004eia.1_In_Frame_Del_p.D66del|ARMCX3_uc004eib.1_In_Frame_Del_p.D66del|ARMCX3_uc004eic.1_In_Frame_Del_p.D66del	NM_016607	NP_057691	Q9UH62	ARMX3_HUMAN	armadillo repeat containing, X-linked 3	66						integral to membrane	binding			ovary(1)|lung(1)	2						ATGACTGGTCTGATGATGATGAT	0.448													14	602	---	---	---	---					
MIR1277	100302214	broad.mit.edu	37	X	117520366	117520367	+	RNA	DEL	AT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:117520366_117520367delAT	hsa-mir-1277|MI0006419	+			c.10_11delAT			WDR44_uc004eqn.2_Intron|WDR44_uc004eqo.2_Intron|WDR44_uc011mtr.1_Intron																	0						AACCTCCCAAatatatatatat	0.203													9	136	---	---	---	---					
CUL4B	8450	broad.mit.edu	37	X	119694117	119694119	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:119694117_119694119delGAG	uc004esw.2	-	3	866_868	c.429_431delCTC	c.(427-432)TCCTCA>TCA	p.143_144SS>S	CUL4B_uc004esv.2_In_Frame_Del_p.125_126SS>S	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	143_144	Ser-rich.				cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TGGTGAAGATgaggaggaggagg	0.424													7	116	---	---	---	---					
CD99L2	83692	broad.mit.edu	37	X	149937526	149937528	+	In_Frame_Del	DEL	GGC	-	-	rs7877654	byFrequency	TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:149937526_149937528delGGC	uc004fel.2	-	11	886_888	c.768_770delGCC	c.(766-771)CCGCCC>CCC	p.256_257PP>P	CD99L2_uc004fek.2_RNA|CD99L2_uc004fem.2_In_Frame_Del_p.207_208PP>P|CD99L2_uc004fen.2_In_Frame_Del_p.184_185PP>P|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_In_Frame_Del_p.183_184PP>P	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	256_257	Cytoplasmic (Potential).|Poly-Pro.				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGCTGGTTCGGGCGGCGGCGGCG	0.611													9	397	---	---	---	---					
PASD1	139135	broad.mit.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7893-01A-11D-2201-08	TCGA-IB-7893-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37ed3200-311b-4a5c-b130-04d290ed784d	38718592-ad6d-44ca-b328-88cff2eeaeec	g.chrX:150817142_150817144delGCT	uc004fev.3	+	9	1017_1019	c.685_687delGCT	c.(685-687)GCTdel	p.A236del		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	236	Poly-Ala.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGTTGAACCCgctgctgctgctg	0.355													8	298	---	---	---	---					
