Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RERE	473	broad.mit.edu	37	1	8420609	8420609	+	Silent	SNP	T	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:8420609T>G	uc001ape.2	-	19	3768	c.2958A>C	c.(2956-2958)CCA>CCC	p.P986P	RERE_uc001apf.2_Silent_p.P986P|RERE_uc010nzx.1_Silent_p.P718P|RERE_uc001apd.2_Silent_p.P432P	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	986	Pro-rich.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GTTGCAGGGGTGGGGGGTGAG	0.706													13	205					0	0	0.003954	0	0
PLOD1	5351	broad.mit.edu	37	1	12008051	12008051	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:12008051C>T	uc001atm.2	+	2	186	c.95C>T	c.(94-96)ACG>ATG	p.T32M	PLOD1_uc010obb.1_Missense_Mutation_p.T79M	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	32					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	TTAGTCCTCACGGTGGCCACT	0.547													4	350					0	0	0.001984	0	0
MST1P2	11209	broad.mit.edu	37	1	16974243	16974243	+	RNA	SNP	G	C	C	rs142213352	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:16974243G>C	uc009vow.2	+	5		c.1053G>C			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GATCTCAGCTGTCGCTCGGGG	0.652													6	149					0	0	0.000978	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	18023641	18023641	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:18023641G>A	uc001ban.2	+	29	3765	c.3606G>A	c.(3604-3606)GAG>GAA	p.E1202E	ARHGEF10L_uc001bao.2_Silent_p.E1163E|ARHGEF10L_uc001bap.2_Silent_p.E1158E|ARHGEF10L_uc001baq.2_Silent_p.E963E|ARHGEF10L_uc010ocs.1_Silent_p.E975E|ARHGEF10L_uc001bar.2_Silent_p.E905E|ARHGEF10L_uc009vpf.2_RNA|ARHGEF10L_uc001bas.2_Silent_p.E226E	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	1202					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		CAGCTTTGGAGCACAGCGAGG	0.692													4	94					0	0	0.000602	0	0
NBPF3	84224	broad.mit.edu	37	1	21806573	21806573	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:21806573A>G	uc001ber.2	+	11	1588	c.1238A>G	c.(1237-1239)GAG>GGG	p.E413G	NBPF3_uc001bes.2_Missense_Mutation_p.E357G|NBPF3_uc009vqb.2_Missense_Mutation_p.E401G|NBPF3_uc010odm.1_Missense_Mutation_p.E343G	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	413	NBPF 3.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GATGAGAAAGAGCCTGAAGTC	0.463													5	228					0	0	0.004482	0	0
PHACTR4	65979	broad.mit.edu	37	1	28807088	28807088	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:28807088C>A	uc001bpw.2	+	9	2014	c.1732C>A	c.(1732-1734)CGG>AGG	p.R578R	PHACTR4_uc001bpv.1_RNA|PHACTR4_uc001bpx.2_Silent_p.R562R|PHACTR4_uc001bpy.2_Silent_p.R588R	NM_001048183	NP_001041648	Q8IZ21	PHAR4_HUMAN	phosphatase and actin regulator 4 isoform 1	578							actin binding|protein phosphatase inhibitor activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;7.01e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;1.35e-21)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0144)|READ - Rectum adenocarcinoma(331;0.0649)		GAATGAAATACGGCACCAGAT	0.428													20	834					9.90768e-06	1.19485e-05	0.004656	1	0
MAST2	23139	broad.mit.edu	37	1	46498283	46498283	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:46498283G>A	uc001cov.2	+	26	3713	c.3430G>A	c.(3430-3432)GGT>AGT	p.G1144S	MAST2_uc001cow.2_Missense_Mutation_p.G1144S|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1144	PDZ.				regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					GGAGGATGGAGGTCCGGCCAG	0.577													4	216					0	0	0.000602	0	0
CACHD1	57685	broad.mit.edu	37	1	65142638	65142638	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:65142638G>A	uc001dbo.1	+	22	2988	c.2883G>A	c.(2881-2883)CTG>CTA	p.L961L	CACHD1_uc001dbp.1_Silent_p.L716L|CACHD1_uc001dbq.1_Silent_p.L716L|CACHD1_uc010opa.1_Silent_p.L205L	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	1012	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						ACCCTGGCCTGCAAGATGCTC	0.517													5	513					0	0	0.004482	0	0
AKNAD1	254268	broad.mit.edu	37	1	109369904	109369904	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:109369904T>C	uc001dwa.2	-	11	2128	c.1859A>G	c.(1858-1860)AAG>AGG	p.K620R	AKNAD1_uc010ovb.1_Missense_Mutation_p.K327R|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	620										ovary(3)	3						TCCGTGGCCCTTTTTCTCCAC	0.413													5	570					0	0	0.000602	0	0
HIPK1	204851	broad.mit.edu	37	1	114514529	114514529	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:114514529G>A	uc001eem.2	+	15	3258	c.3097G>A	c.(3097-3099)GCT>ACT	p.A1033T	HIPK1_uc001eel.2_Missense_Mutation_p.A1033T|HIPK1_uc001een.2_Missense_Mutation_p.A1033T|HIPK1_uc001eeo.2_Missense_Mutation_p.A659T|HIPK1_uc001eep.2_Missense_Mutation_p.A639T|HIPK1_uc001eeq.2_Missense_Mutation_p.A325T	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	1033	Interaction with TP53.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGGGTATCGAGCTCAACGCGG	0.532													4	331					0	0	0.001168	0	0
TRIM45	80263	broad.mit.edu	37	1	117656045	117656045	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:117656045G>A	uc001egz.2	-	5	2118	c.1530C>T	c.(1528-1530)TGC>TGT	p.C510C	TRIM45_uc009whe.2_Silent_p.C492C|TRIM45_uc001eha.2_Silent_p.C406C	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	510						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		AGAAGGTGCAGCAGTGAAACA	0.577													5	285					0	0	0.000602	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144921894	144921894	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:144921894C>G	uc001elw.3	-	9	1426	c.1135G>C	c.(1135-1137)GTA>CTA	p.V379L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.V445L|PDE4DIP_uc001emc.1_Missense_Mutation_p.V379L|PDE4DIP_uc001emd.1_Missense_Mutation_p.V379L|PDE4DIP_uc001emb.1_Missense_Mutation_p.V542L|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Missense_Mutation_p.V166L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	379	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GCAGCCTCTACAAATTGCACA	0.443			T	PDGFRB	MPD								7	891					0	0	0.001168	0	0
RPTN	126638	broad.mit.edu	37	1	152128617	152128617	+	Missense_Mutation	SNP	T	C	C	rs12117644		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:152128617T>C	uc001ezs.1	-	3	1023	c.958A>G	c.(958-960)AGT>GGT	p.S320G		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	320	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCCGTCTGACTGTAGTGGGAA	0.507													6	943					0	0	0.000602	0	0
SYT11	23208	broad.mit.edu	37	1	155850311	155850311	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:155850311G>A	uc001fmg.2	+	3	1145	c.882G>A	c.(880-882)GAG>GAA	p.E294E	SYT11_uc010pgq.1_5'UTR	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	294	Cytoplasmic (Potential).					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			GCAGAGGGGAGCTCCAGGTGT	0.537													5	324					0	0	0.000602	0	0
SH2D2A	9047	broad.mit.edu	37	1	156779231	156779231	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:156779231G>A	uc001fqd.2	-	7	906	c.766C>T	c.(766-768)CCC>TCC	p.P256S	SH2D2A_uc001fqc.1_Missense_Mutation_p.P228S|SH2D2A_uc009wsh.2_Missense_Mutation_p.P266S|SH2D2A_uc001fqe.2_Missense_Mutation_p.P238S|SH2D2A_uc010phs.1_Missense_Mutation_p.P256S	NM_003975	NP_003966	Q9NP31	SH22A_HUMAN	SH2 domain protein 2A isoform 2	256	Pro-rich.				angiogenesis|cell differentiation|signal transduction	cytoplasm|soluble fraction	SH3 domain binding|SH3/SH2 adaptor activity				0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					ACTTCTGGGGGCAGCTGAGGT	0.627													7	572					0	0	0.003080	0	0
C1orf92	149499	broad.mit.edu	37	1	156897772	156897772	+	Silent	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:156897772A>G	uc001fqm.2	+	9	1144	c.972A>G	c.(970-972)AAA>AAG	p.K324K	C1orf92_uc001fql.2_Silent_p.K109K	NM_144702	NP_653303	Q8N4P6	LRC71_HUMAN	hypothetical protein LOC149499	324											0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGCTGGAAAAAGGGACACAGG	0.677											OREG0013892	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	67					0	0	0.000248	0	0
F5	2153	broad.mit.edu	37	1	169510502	169510502	+	Missense_Mutation	SNP	G	T	T	rs140018525	byFrequency	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:169510502G>T	uc001ggg.1	-	13	3971	c.3826C>A	c.(3826-3828)CTT>ATT	p.L1276I		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1276	2-11.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGGAGAAAGGGGCATCTGA	0.502													17	861					3.10358e-05	3.6817e-05	0.002299	1	0
ACBD6	84320	broad.mit.edu	37	1	180461444	180461444	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:180461444A>G	uc001gog.2	-	3	965	c.344T>C	c.(343-345)ATC>ACC	p.I115T		NM_032360	NP_115736	Q9BR61	ACBD6_HUMAN	acyl-coenzyme A binding domain containing 6	115	ACB.					cytoplasm|nucleus	fatty-acyl-CoA binding			ovary(1)	1						AACTACTGCGATATATTCCTG	0.358													9	350					0	0	0.002450	0	0
NCF2	4688	broad.mit.edu	37	1	183539932	183539932	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:183539932C>T	uc001gqj.3	-	6	927	c.652G>A	c.(652-654)GCC>ACC	p.A218T	NCF2_uc010pod.1_Missense_Mutation_p.A173T|NCF2_uc010poe.1_Missense_Mutation_p.A137T|NCF2_uc001gqk.3_Missense_Mutation_p.A218T	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	218					cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						TGCAGAGGGGCAAACCCAGAG	0.517													5	290					0	0	0.003080	0	0
PLXNA2	5362	broad.mit.edu	37	1	208225740	208225740	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:208225740G>A	uc001hgz.2	-	15	3683	c.2925C>T	c.(2923-2925)ACC>ACT	p.T975T		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	975	Extracellular (Potential).|IPT/TIG 2.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GGTAATGGCCGGTAATGGTCA	0.542													4	429					0	0	0.000248	0	0
SLC35F3	148641	broad.mit.edu	37	1	234454518	234454518	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:234454518G>A	uc001hwa.1	+	5	997	c.769G>A	c.(769-771)GGC>AGC	p.G257S	SLC35F3_uc001hvy.1_Missense_Mutation_p.G326S	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	257					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GCTCCTCCTGGGCAGTGCTAA	0.468													12	709					0	0	0.001368	0	0
RYR2	6262	broad.mit.edu	37	1	237732446	237732446	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:237732446C>A	uc001hyl.1	+	29	3545	c.3425C>A	c.(3424-3426)GCC>GAC	p.A1142D		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1142	Cytoplasmic (By similarity).|4 X approximate repeats.|B30.2/SPRY 2.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCTGTATAGGCCCAGCGGTGG	0.527													11	189					6.42651e-13	8.483e-13	0.000978	1	0
FMN2	56776	broad.mit.edu	37	1	240371421	240371421	+	Silent	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:240371421C>T	uc010pyd.1	+	5	3534	c.3309C>T	c.(3307-3309)CCC>CCT	p.P1103P	FMN2_uc010pye.1_Silent_p.P1107P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1103	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCTCTACCCGGAGTGGGCA	0.736													8	533					0	0	0.001855	0	0
FMN2	56776	broad.mit.edu	37	1	240371430	240371430	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:240371430C>A	uc010pyd.1	+	5	3543	c.3318C>A	c.(3316-3318)GGC>GGA	p.G1106G	FMN2_uc010pye.1_Silent_p.G1110G	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1106	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCGGAGTGGGCATACCTCCTC	0.731													6	541					5.50884e-06	6.66569e-06	0.001368	1	0
GREM2	64388	broad.mit.edu	37	1	240656720	240656720	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:240656720G>A	uc001hys.2	-	2	336	c.56C>T	c.(55-57)GCG>GTG	p.A19V		NM_022469	NP_071914	Q9H772	GREM2_HUMAN	gremlin 2 precursor	19					BMP signaling pathway	extracellular space	cytokine activity				0		all_cancers(173;0.0196)	OV - Ovarian serous cystadenocarcinoma(106;0.0123)			CCGGGCTTCCGCCACCTTCAC	0.612													6	105					0	0	0.001168	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430773	37430773	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:37430773G>A	uc001iza.1	+	7	879	c.780G>A	c.(778-780)ACG>ACA	p.T260T		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	316						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CACCTGACACGGCTGAAAGCT	0.493													5	244					0	0	0.001984	0	0
OR13A1	79290	broad.mit.edu	37	10	45799046	45799046	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:45799046G>A	uc001jcc.1	-	4	1134	c.825C>T	c.(823-825)TAC>TAT	p.Y275Y	OR13A1_uc001jcd.1_Silent_p.Y271Y	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	275	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTATGTAGGCGTAGAAGACAG	0.567													4	300					0	0	0.000602	0	0
PCDH15	65217	broad.mit.edu	37	10	55587212	55587212	+	Silent	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:55587212C>G	uc001jju.1	-	32	4703	c.4308G>C	c.(4306-4308)CCG>CCC	p.P1436P	PCDH15_uc010qhq.1_Silent_p.P1441P|PCDH15_uc010qhr.1_Silent_p.P1436P|PCDH15_uc010qhs.1_Silent_p.P1448P|PCDH15_uc010qht.1_Silent_p.P1443P|PCDH15_uc010qhu.1_Silent_p.P1436P|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.P1433P|PCDH15_uc010qhw.1_Silent_p.P1396P|PCDH15_uc010qhx.1_Silent_p.P1365P|PCDH15_uc010qhy.1_Silent_p.P1441P|PCDH15_uc010qhz.1_Silent_p.P1436P|PCDH15_uc010qia.1_Silent_p.P1414P|PCDH15_uc010qib.1_Silent_p.P1411P	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1436	Poly-Pro.|Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				gcggcggcggcgggggcgCTG	0.448										HNSCC(58;0.16)			9	370					0	0	0.001368	0	0
SLC16A9	220963	broad.mit.edu	37	10	61424005	61424005	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:61424005G>A	uc010qig.1	-	4	865	c.416C>T	c.(415-417)GCG>GTG	p.A139V		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	139	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						CAGGCCAAGCGCTAGGCCTCG	0.398													5	321					0	0	0.000602	0	0
H2AFY2	55506	broad.mit.edu	37	10	71835576	71835576	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:71835576G>A	uc001jqm.2	+	2	621	c.162G>A	c.(160-162)GAG>GAA	p.E54E	H2AFY2_uc001jqn.2_RNA	NM_018649	NP_061119	Q9P0M6	H2AW_HUMAN	H2A histone family, member Y2	54	Histone H2A.				chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding			skin(1)	1						CAGTCATTGAGTACCTGGCAG	0.602													4	126					0	0	0.001984	0	0
COL17A1	1308	broad.mit.edu	37	10	105816838	105816838	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:105816838C>A	uc001kxr.2	-	17	1529	c.1360G>T	c.(1360-1362)GCC>TCC	p.A454S	COL17A1_uc010qqv.1_Missense_Mutation_p.A438S	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	454	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GGGCACCAGGCTGGCGCTGGT	0.483													10	47					0.000442599	0.000514947	0.006214	1	0
RPL13AP6	644511	broad.mit.edu	37	10	112696573	112696573	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:112696573T>C	uc010qrh.1	-	1	441	c.419A>G	c.(418-420)CAC>CGC	p.H140R	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GTGAGCCAGGTGCCCCAGATA	0.537													4	55					0	0	0.001168	0	0
NRAP	4892	broad.mit.edu	37	10	115374049	115374049	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:115374049A>G	uc001laj.2	-	29	3357	c.3193T>C	c.(3193-3195)TAC>CAC	p.Y1065H	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Missense_Mutation_p.Y1030H|NRAP_uc001lal.3_Missense_Mutation_p.Y1065H	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1065	Nebulin 27.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		GCCTCTTTGTATTTGTACTAA	0.453													9	480					0	0	0.008291	0	0
PRLHR	2834	broad.mit.edu	37	10	120354665	120354665	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:120354665T>C	uc001ldp.1	-	2	231	c.92A>G	c.(91-93)GAG>GGG	p.E31G		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	31	Extracellular (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		CGCCGAGGCCTCTGCGCTCTG	0.677													4	256					0	0	0.000602	0	0
NLRP6	171389	broad.mit.edu	37	11	281566	281566	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:281566A>G	uc010qvs.1	+	4	1832	c.1832A>G	c.(1831-1833)GAG>GGG	p.E611G	NLRP6_uc010qvt.1_Missense_Mutation_p.E611G	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	611	Poly-Glu.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		GAGGAGGAGGAGGGAGAGGAG	0.662													6	687					0	0	0.004482	0	0
TSPAN4	7106	broad.mit.edu	37	11	864455	864455	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:864455C>G	uc001lsd.1	+	5	483	c.274C>G	c.(274-276)CTG>GTG	p.L92V	TSPAN4_uc001lse.1_Missense_Mutation_p.L28V|TSPAN4_uc001lsf.1_Missense_Mutation_p.L92V|TSPAN4_uc001lsg.1_Missense_Mutation_p.L92V|TSPAN4_uc001lsh.1_Missense_Mutation_p.L92V|TSPAN4_uc001lsi.1_Missense_Mutation_p.L92V|TSPAN4_uc001lsj.1_Missense_Mutation_p.L92V	NM_003271	NP_003262	O14817	TSN4_HUMAN	tetraspanin 4 isoform a	92	Helical; (Potential).				protein complex assembly	integral to plasma membrane				breast(1)	1		all_cancers(49;2.64e-08)|all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)		all cancers(45;4.32e-25)|Epithelial(43;3.29e-24)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCTGCTGCTGCTGGTGTTCCT	0.672													5	579					0	0	0.003080	0	0
CARS	833	broad.mit.edu	37	11	3039858	3039858	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:3039858T>C	uc001lxh.2	-	12	1342	c.1268A>G	c.(1267-1269)AAG>AGG	p.K423R	CARS_uc001lxe.2_Missense_Mutation_p.K413R|CARS_uc001lxf.2_Missense_Mutation_p.K506R|CARS_uc001lxg.2_Missense_Mutation_p.K423R|CARS_uc010qxo.1_Missense_Mutation_p.K506R|CARS_uc010qxp.1_Missense_Mutation_p.K436R	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	423					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	ACCTGAGTGCTTTTTCAAGGC	0.488			T	ALK	ALCL								4	706					0	0	0.000602	0	0
ZNF195	7748	broad.mit.edu	37	11	3380510	3380510	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:3380510T>C	uc001lxt.2	-	6	1906	c.1728A>G	c.(1726-1728)AAA>AAG	p.K576K	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Silent_p.K553K|ZNF195_uc001lxs.2_Silent_p.K504K|ZNF195_uc010qxr.1_Silent_p.K557K|ZNF195_uc009ydz.2_Silent_p.K531K|ZNF195_uc001lxu.2_Silent_p.K508K	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	576					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		ATTTGTAGGGTTTCTCTCCAG	0.393													5	435					0	0	0.004482	0	0
ARHGAP1	392	broad.mit.edu	37	11	46702045	46702045	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:46702045T>C	uc001ndd.2	-	9	881	c.812A>G	c.(811-813)CAG>CGG	p.Q271R		NM_004308	NP_004299	Q07960	RHG01_HUMAN	Rho GTPase activating protein 1	271	Rho-GAP.				Rho protein signal transduction	cytosol|intracellular membrane-bounded organelle	SH3 domain binding|SH3/SH2 adaptor activity			skin(1)	1		Lung NSC(402;1.76e-12)|all_lung(304;1.3e-11)		GBM - Glioblastoma multiforme(35;5.17e-06)|BRCA - Breast invasive adenocarcinoma(625;0.00112)|Lung(87;0.153)		ACCGTGGGCCTGTAAGTAGGC	0.642													4	267					0	0	0.000248	0	0
TRIM48	79097	broad.mit.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:55035844T>C	uc010rid.1	+	4	660	c.574T>C	c.(574-576)TAC>CAC	p.Y192H		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	176						intracellular	zinc ion binding				0						AGACATATTATACAGGTGAGT	0.338													8	167					0	0	0.001368	0	0
TMEM132A	54972	broad.mit.edu	37	11	60696173	60696173	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:60696173G>T	uc001nqj.2	+	4	800	c.607G>T	c.(607-609)GCC>TCC	p.A203S	TMEM132A_uc001nqi.2_Missense_Mutation_p.A203S|TMEM132A_uc001nqk.2_Missense_Mutation_p.A216S|TMEM132A_uc001nql.1_Missense_Mutation_p.A216S	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	203	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CACCACACGGGCCGAGCTGGC	0.682													17	203					2.39556e-15	3.17369e-15	0.002780	1	0
AHNAK	79026	broad.mit.edu	37	11	62296070	62296070	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:62296070A>G	uc001ntl.2	-	5	6119	c.5819T>C	c.(5818-5820)GTG>GCG	p.V1940A	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1940					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CGACACATCCACATCCCCTTT	0.502													8	862					0	0	0.003080	0	0
INTS5	80789	broad.mit.edu	37	11	62414854	62414854	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:62414854A>G	uc001nud.2	-	2	2751	c.2698T>C	c.(2698-2700)TCC>CCC	p.S900P	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	900					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						TGCCAGGGGGAGTGGGTCGTG	0.632													4	528					0	0	0.000602	0	0
SLC22A8	9376	broad.mit.edu	37	11	62782306	62782306	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:62782306G>A	uc001nwo.2	-	2	261	c.125C>T	c.(124-126)GCC>GTC	p.A42V	SLC22A8_uc001nwp.2_Missense_Mutation_p.A42V|SLC22A8_uc009yom.2_Intron|SLC22A8_uc010rmm.1_Intron|SLC22A8_uc009yon.2_Missense_Mutation_p.A42V	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	42	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						AGGGGTGGCGGCTGTGAAGAT	0.622													8	837					0	0	0.001168	0	0
VEGFB	7423	broad.mit.edu	37	11	64005048	64005048	+	Silent	SNP	A	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:64005048A>C	uc001nyw.2	+	6	607	c.567A>C	c.(565-567)GGA>GGC	p.G189G	VEGFB_uc001nyx.2_Missense_Mutation_p.T156P	NM_003377	NP_003368	P49765	VEGFB_HUMAN	vascular endothelial growth factor B precursor	189					anti-apoptosis|induction of positive chemotaxis|negative regulation of gene expression|negative regulation of neuron apoptosis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular wound healing|vascular endothelial growth factor receptor signaling pathway	extracellular region|extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|heparin binding|vascular endothelial growth factor receptor 1 binding				0						TGACCCCCGGACCTGCCGCTG	0.711													7	32					0	0	0.006122	0	0
MRPL49	740	broad.mit.edu	37	11	64893062	64893062	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:64893062G>A	uc001oda.1	+	3	423	c.332G>A	c.(331-333)CGG>CAG	p.R111Q	MRPL49_uc001ocz.1_RNA	NM_004927	NP_004918	Q13405	RM49_HUMAN	mitochondrial ribosomal protein L49	111					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						ACTGTGATCCGGAAAGTGGAA	0.572													4	444					0	0	0.000248	0	0
SPTBN2	6712	broad.mit.edu	37	11	66463811	66463811	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:66463811C>A	uc001ojd.2	-	20	4287	c.4215G>T	c.(4213-4215)CAG>CAT	p.Q1405H		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1405	Spectrin 11.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCGAGTGCAGCTGGGCCTGCA	0.612													11	263					1.58986e-06	1.94317e-06	0.008291	1	0
FOLH1B	219595	broad.mit.edu	37	11	89395322	89395322	+	Translation_Start_Site	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:89395322C>T	uc001pda.2	+	2	433	c.-93C>T	c.(-95--91)TACGC>TATGC			NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B						proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TTTCAGAATACGCTTATAGGC	0.328													8	176					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	11	89774252	89774252	+	Missense_Mutation	SNP	G	A	A	rs145791878	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:89774252G>A	uc010rua.1	+	7	1016	c.893G>A	c.(892-894)AGT>AAT	p.S298N		NM_020358	NP_065091			ring finger protein 18																		GAAGCCAACAGTGATATCTTT	0.323													4	163					0	0	0.001984	0	0
CCDC15	80071	broad.mit.edu	37	11	124857939	124857939	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:124857939G>A	uc001qbm.3	+	8	2076	c.1817G>A	c.(1816-1818)CGG>CAG	p.R606Q		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	606						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		TGTCAGGACCGGGATTTTCTA	0.408													4	484					0	0	0.008291	0	0
PRDM10	56980	broad.mit.edu	37	11	129781986	129781986	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:129781986G>A	uc001qfm.2	-	19	3220	c.2988C>T	c.(2986-2988)TCC>TCT	p.S996S	PRDM10_uc001qfj.2_Intron|PRDM10_uc001qfk.2_Intron|PRDM10_uc001qfl.2_Silent_p.S910S|PRDM10_uc010sbx.1_Silent_p.S906S|PRDM10_uc001qfn.2_Silent_p.S992S	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		GTACCTGGGCGGAGGACGGGG	0.567													5	594					0	0	0.003080	0	0
GLB1L2	89944	broad.mit.edu	37	11	134240953	134240953	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:134240953G>A	uc001qhp.2	+	13	1455	c.1267G>A	c.(1267-1269)GGA>AGA	p.G423R	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	423					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		AGTCAATGGGGGAAATGGACA	0.562													5	702					0	0	0.001168	0	0
AKAP3	10566	broad.mit.edu	37	12	4737445	4737445	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:4737445C>A	uc001qnb.3	-	4	852	c.623G>T	c.(622-624)AGT>ATT	p.S208I		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	208					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						ATTTGGGGGACTTTGTGATGA	0.488													5	392					0.000602214	0.000698415	0.000602	1	0
VWF	7450	broad.mit.edu	37	12	6138592	6138592	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:6138592G>A	uc001qnn.1	-	22	3133	c.2883C>T	c.(2881-2883)TAC>TAT	p.Y961Y	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	961	VWFD 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCAGAATGATGTACCGGCCAG	0.547													5	438					0	0	0.001168	0	0
CHD4	1108	broad.mit.edu	37	12	6686950	6686950	+	Splice_Site	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:6686950C>T	uc001qpo.2	-	37	5525	c.5361_splice	c.e37+1	p.K1787_splice	CHD4_uc001qpn.2_Splice_Site_p.K1780_splice|CHD4_uc001qpp.2_Splice_Site_p.K1812_splice|uc001qpq.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4						chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CAACCGCTCACCTTAAACCTT	0.463													10	622					0	0	0.000978	0	0
CLEC4A	50856	broad.mit.edu	37	12	8276535	8276535	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:8276535A>G	uc001qtz.1	+	1	308	c.61A>G	c.(61-63)ATC>GTC	p.I21V	CLEC4A_uc009zga.1_Missense_Mutation_p.I21V|CLEC4A_uc001qub.1_Missense_Mutation_p.I21V|CLEC4A_uc001quc.1_Missense_Mutation_p.I21V|CLEC4A_uc009zgb.1_Missense_Mutation_p.I21V	NM_016184	NP_057268	Q9UMR7	CLC4A_HUMAN	C-type lectin domain family 4, member A isoform	21	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway|innate immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0				Kidney(36;0.0915)		GTCCTCAGGCATCAACACAGC	0.418													6	315					0	0	0.003080	0	0
PRB1	5542	broad.mit.edu	37	12	11506602	11506602	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:11506602T>C	uc001qzw.1	-	3	472	c.435A>G	c.(433-435)GGA>GGG	p.G145G	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	206	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|8.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGGACTTGTCTCCTTGTGGGG	0.607													8	802					0	0	0.001368	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20890181	20890182	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:20890181_20890182CC>AA	uc001rej.3	+	12	1878_1879	c.1523_1524CC>AA	c.(1522-1524)ACC>AAA	p.T508K	SLCO1C1_uc010sii.1_Missense_Mutation_p.T508K|SLCO1C1_uc010sij.1_Missense_Mutation_p.T459K|SLCO1C1_uc009zip.2_Missense_Mutation_p.T342K|SLCO1C1_uc001rei.2_Missense_Mutation_p.T508K|SLCO1C1_uc010sik.1_Missense_Mutation_p.T390K	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	508	Extracellular (Potential).|Kazal-like.				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					GGTTGTCAAACCTCCAACAGGA	0.406													6	337					0	0	0.004672	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21028204	21028204	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:21028204G>C	uc001rek.2	+	8	889	c.763G>C	c.(763-765)GTT>CTT	p.V255L	SLCO1B3_uc001rel.2_Missense_Mutation_p.V255L|SLCO1B3_uc010sil.1_Missense_Mutation_p.V255L|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.V80L	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	255	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CTCTCGTTGGGTTGGAGCTTG	0.378													6	693					0	0	0.001168	0	0
SOX5	6660	broad.mit.edu	37	12	23818423	23818423	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:23818423G>C	uc001rfw.2	-	7	988	c.886C>G	c.(886-888)CAA>GAA	p.Q296E	SOX5_uc001rfx.2_Missense_Mutation_p.Q283E|SOX5_uc001rfy.2_Missense_Mutation_p.Q283E|SOX5_uc010siv.1_Missense_Mutation_p.Q283E|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.Q248E	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	296					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						AGGAATCCTTGCTGGGCAGCT	0.498													8	762					0	0	0.004482	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30881942	30881942	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:30881942T>C	uc001rji.1	-	8	2173	c.1422A>G	c.(1420-1422)CAA>CAG	p.Q474Q	CAPRIN2_uc001rjf.1_Silent_p.Q271Q|CAPRIN2_uc001rjg.1_Silent_p.Q141Q|CAPRIN2_uc001rjh.1_Silent_p.Q474Q|CAPRIN2_uc001rjj.1_Silent_p.Q141Q|CAPRIN2_uc001rjk.3_Silent_p.Q474Q|CAPRIN2_uc001rjl.3_Silent_p.Q474Q|CAPRIN2_uc001rjm.1_Silent_p.Q141Q|CAPRIN2_uc001rjn.1_Silent_p.Q141Q	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	474					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					TAGGTGTATCTTGCTTCCACT	0.468													5	646					0	0	0.001984	0	0
DNM1L	10059	broad.mit.edu	37	12	32871624	32871624	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:32871624G>A	uc001rld.2	+	7	828	c.667G>A	c.(667-669)GGT>AGT	p.G223S	DNM1L_uc010skf.1_RNA|DNM1L_uc010skg.1_Intron|DNM1L_uc001rle.2_Missense_Mutation_p.G223S|DNM1L_uc001rlf.2_Missense_Mutation_p.G223S|DNM1L_uc010skh.1_Missense_Mutation_p.G289S|DNM1L_uc001rlg.2_Missense_Mutation_p.G289S|DNM1L_uc001rlh.2_Missense_Mutation_p.G276S|DNM1L_uc010ski.1_Intron	NM_012062	NP_036192	O00429	DNM1L_HUMAN	dynamin 1-like isoform 1	223	GTPase domain.				cellular component disassembly involved in apoptosis|mitochondrial fragmentation involved in apoptosis|mitochondrial membrane organization|positive regulation of mitochondrial fission	cis-Golgi network|cytosol|endomembrane system|endoplasmic reticulum|mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2	Lung NSC(5;2.15e-06)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CATGGATGCGGGTACTGATGC	0.383													5	598					0	0	0.001984	0	0
TROAP	10024	broad.mit.edu	37	12	49724313	49724313	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:49724313G>T	uc001rtx.3	+	13	1852	c.1685G>T	c.(1684-1686)AGT>ATT	p.S562I	TROAP_uc009zlh.2_Missense_Mutation_p.S562I|TROAP_uc001rty.2_Missense_Mutation_p.S270I	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	562	4 X 33 AA approximate tandem repeats.|Cys-rich.|2.				cell adhesion	cytoplasm				ovary(1)	1						TGCTGTAGGAGTGAGCCTGAG	0.592													6	296					0.00198382	0.00226455	0.001984	1	0
LRP1	4035	broad.mit.edu	37	12	57587450	57587450	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:57587450G>A	uc001snd.2	+	47	8252	c.7786G>A	c.(7786-7788)GAC>AAC	p.D2596N	MIR1228_hsa-mir-1228|MI0006318_5'Flank	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2596	Extracellular (Potential).|LDL-receptor class A 12.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GGATGGCTCTGACGAGATCCC	0.622													8	301					0	0	0.004482	0	0
CYP27B1	1594	broad.mit.edu	37	12	58158692	58158692	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:58158692G>A	uc001spz.1	-	5	960	c.808C>T	c.(808-810)CGG>TGG	p.R270W	CYP27B1_uc001sqa.1_Missense_Mutation_p.R35W|CYP27B1_uc001sqb.1_Missense_Mutation_p.A150V|CYP27B1_uc001sqc.1_Missense_Mutation_p.A150V	NM_000785	NP_000776	O15528	CP27B_HUMAN	cytochrome P450, family 27, subfamily B,	270					bone mineralization|calcium ion homeostasis|calcium ion transport|decidualization|G1 to G0 transition|hormone biosynthetic process|negative regulation of calcidiol 1-monooxygenase activity|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of keratinocyte differentiation|positive regulation of vitamin D 24-hydroxylase activity|positive regulation of vitamin D receptor signaling pathway|regulation of bone mineralization|response to estrogen stimulus|response to interferon-gamma|response to lipopolysaccharide|response to tumor necrosis factor|response to vitamin D|vitamin D biosynthetic process|xenobiotic metabolic process	mitochondrial outer membrane	calcidiol 1-monooxygenase activity|electron carrier activity|heme binding			central_nervous_system(3)	3	all_cancers(7;8.09e-80)|Lung NSC(6;2.26e-27)|all_lung(6;1.99e-25)|all_epithelial(6;3.62e-18)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;1.97e-113)|all cancers(5;1.54e-78)|BRCA - Breast invasive adenocarcinoma(9;0.0294)		Calcidiol(DB00146)|Calcitriol(DB00136)|Ergocalciferol(DB00153)	GCCTCTCGCCGCTCCACGTGC	0.612													6	436					0	0	0.001168	0	0
DPY19L2	283417	broad.mit.edu	37	12	64041124	64041124	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:64041124A>G	uc001srp.1	-	5	791	c.610T>C	c.(610-612)TGC>CGC	p.C204R	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	204	Helical; (Potential).				multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		ATGAATGTGCAATACCAGGAG	0.294													7	490					0	0	0.008871	0	0
CIT	11113	broad.mit.edu	37	12	120270636	120270636	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:120270636C>T	uc001txi.1	-	7	745	c.692G>A	c.(691-693)CGC>CAC	p.R231H	CIT_uc001txj.1_Missense_Mutation_p.R231H	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	231	Protein kinase.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GTGTCCTGTGCGGTCAACGAG	0.408													5	540					0	0	0.000602	0	0
ABCB9	23457	broad.mit.edu	37	12	123444354	123444354	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:123444354G>A	uc001udm.3	-	2	739	c.429C>T	c.(427-429)GGC>GGT	p.G143G	ABCB9_uc009zxr.2_Intron|ABCB9_uc001udo.3_Silent_p.G143G|ABCB9_uc010taj.1_Silent_p.G143G|ABCB9_uc001udp.2_Silent_p.G143G|ABCB9_uc001udq.2_5'UTR|ABCB9_uc001udr.2_Silent_p.G143G	NM_019625	NP_062571	Q9NP78	ABCB9_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	143					positive regulation of T cell mediated cytotoxicity|protein transport	lysosomal membrane|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.84e-05)|Epithelial(86;0.000152)|BRCA - Breast invasive adenocarcinoma(302;0.111)		GGGCCTGGGTGCCTGGCCGCA	0.706													4	115					0	0	0.001168	0	0
DDX51	317781	broad.mit.edu	37	12	132626690	132626690	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:132626690G>A	uc001ujy.3	-	5	901	c.862C>T	c.(862-864)CTG>TTG	p.L288L	NOC4L_uc001ujz.1_5'Flank	NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	288	Helicase ATP-binding.				rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		TTGGTGGGCAGCACAACCAGG	0.652													4	393					0	0	0.001168	0	0
LOC284232	284232	broad.mit.edu	37	13	19412884	19412884	+	RNA	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:19412884T>C	uc010tcj.1	-	1		c.33226A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCAATATCTGTCTTCAAAATG	0.269													5	392					0	0	0.001984	0	0
LOC284232	284232	broad.mit.edu	37	13	19414116	19414116	+	RNA	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:19414116C>T	uc010tcj.1	-	1		c.31994G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GATTGATTTACCTGATTTGGA	0.269													8	81					0	0	0.002299	0	0
OXGR1	27199	broad.mit.edu	37	13	97639388	97639388	+	Missense_Mutation	SNP	A	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:97639388A>T	uc001vmx.1	-	4	870	c.626T>A	c.(625-627)CTC>CAC	p.L209H	OXGR1_uc010afr.1_Missense_Mutation_p.L209H	NM_080818	NP_543008	Q96P68	OXGR1_HUMAN	oxoglutarate (alpha-ketoglutarate) receptor 1	209	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.186)			CACCAAGGGGAGGCAGAAAGT	0.468													8	633					0	0	0.006214	0	0
STK24	8428	broad.mit.edu	37	13	99127232	99127232	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:99127232G>A	uc001vnm.1	-	5	711	c.476C>T	c.(475-477)GCG>GTG	p.A159V	STK24_uc001vnn.1_Missense_Mutation_p.A147V|STK24_uc010tim.1_Missense_Mutation_p.A128V	NM_003576	NP_003567	Q9Y6E0	STK24_HUMAN	serine/threonine kinase 24 isoform a	159	Protein kinase.				cellular component disassembly involved in apoptosis|signal transduction	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			GACGTTGGCCGCTGCAAAAGA	0.622													4	161					0	0	0.000602	0	0
NALCN	259232	broad.mit.edu	37	13	101755619	101755619	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:101755619G>A	uc001vox.1	-	26	3150	c.2961C>T	c.(2959-2961)GTC>GTT	p.V987V		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	987	Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GGCACCGAAGGACCATTAGAA	0.443													11	407					0	0	0.001368	0	0
SLC10A2	6555	broad.mit.edu	37	13	103703661	103703661	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:103703661G>A	uc001vpy.3	-	4	1304	c.707C>T	c.(706-708)GCG>GTG	p.A236V		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	236	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GGAGTAACCCGCCACAGGAAA	0.433													4	335					0	0	0.001168	0	0
FAM155A	728215	broad.mit.edu	37	13	108518718	108518718	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:108518718T>C	uc001vql.2	-	1	743	c.227A>G	c.(226-228)CAG>CGG	p.Q76R		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	76	Poly-Gln.					integral to membrane	binding			skin(1)	1						ctgctgccgctgctgctgctg	0.353													9	238					0	0	0.004482	0	0
C14orf21	161424	broad.mit.edu	37	14	24769334	24769334	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:24769334C>A	uc001wol.1	+	1	237	c.174C>A	c.(172-174)AGC>AGA	p.S58R	C14orf21_uc001wom.1_5'Flank|DHRS1_uc001woj.1_5'Flank|DHRS1_uc001wok.2_5'Flank	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	58							RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		CGCACCTGAGCCCGGAAGCTC	0.662													19	385					3.7963e-18	5.08509e-18	0.003330	1	0
LTB4R	1241	broad.mit.edu	37	14	24785074	24785074	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:24785074T>C	uc001wos.2	+	2	538	c.217T>C	c.(217-219)TTT>CTT	p.F73L	LTB4R_uc010alp.2_Missense_Mutation_p.F73L|LTB4R_uc001wou.2_Missense_Mutation_p.F73L	NM_001143919	NP_001137391	Q15722	LT4R1_HUMAN	leukotriene B4 receptor	73	Helical; Name=2; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular component movement|immune response|inflammatory response|muscle contraction	integral to plasma membrane	nucleotide binding				0				GBM - Glioblastoma multiforme(265;0.018)		CACTGCTCCCTTTTTCCTTCA	0.582													4	667					0	0	0.001168	0	0
GALNTL1	57452	broad.mit.edu	37	14	69805396	69805396	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:69805396T>C	uc010aqu.1	+	10	1089	c.996T>C	c.(994-996)GGT>GGC	p.G332G	GALNTL1_uc001xla.1_Silent_p.G332G|GALNTL1_uc001xlb.1_Silent_p.G332G	NM_020692	NP_065743	Q8N428	GLTL1_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	332	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(1)|central_nervous_system(1)	2				all cancers(60;0.00793)|BRCA - Breast invasive adenocarcinoma(234;0.0174)|OV - Ovarian serous cystadenocarcinoma(108;0.0656)		GGATGTGTGGTGGCAGTCTGG	0.592													11	505					0	0	0.002450	0	0
C14orf49	161176	broad.mit.edu	37	14	95921857	95921857	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:95921857C>A	uc001yei.3	-	5	1009	c.994G>T	c.(994-996)GCC>TCC	p.A332S	C14orf49_uc010avi.2_Missense_Mutation_p.A332S|C14orf49_uc001yej.1_Missense_Mutation_p.A332S	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	332	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		TGCTCCCAGGCTCCCCTGGAC	0.652													14	357					3.52763e-06	4.29708e-06	0.004990	1	0
DYNC1H1	1778	broad.mit.edu	37	14	102453970	102453970	+	Splice_Site	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:102453970G>A	uc001yks.2	+	9	2882	c.2718_splice	c.e9+1	p.E906_splice		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1						cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TGACATGGAGGTAAGGGATAG	0.398													6	311					0	0	0.001168	0	0
ADAM6	8755	broad.mit.edu	37	14	106825090	106825090	+	RNA	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:106825090C>G	uc010tyt.1	-	330		c.12987G>C								Parts of antibodies, mostly variable regions.												0						TTTGCAAATACAGTGAGTTCT	0.428													3	146					0	0	0.000602	0	0
RPAP1	26015	broad.mit.edu	37	15	41815528	41815528	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:41815528G>T	uc001zod.2	-	18	2585	c.2461C>A	c.(2461-2463)CTC>ATC	p.L821I	RPAP1_uc001zoc.2_5'UTR	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	821						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		ATGTCCTGGAGCCAATCCTCC	0.577													14	199					1.99824e-07	2.50124e-07	0.004990	1	0
LOC645752	645752	broad.mit.edu	37	15	78208021	78208021	+	Silent	SNP	T	C	C	rs58158543	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:78208021T>C	uc010bky.2	-	16	1829	c.1065A>G	c.(1063-1065)GAA>GAG	p.E355E	LOC645752_uc010umq.1_Silent_p.E2E|uc002bcw.1_5'Flank|uc002bcx.1_5'Flank	NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TGATGACATCTTCCATCTCCT	0.607													6	691					0	0	0.004482	0	0
WASH3P	374666	broad.mit.edu	37	15	102515344	102515344	+	Missense_Mutation	SNP	A	C	C	rs141089280	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:102515344A>C	uc002cdi.2	+	9	1988	c.568A>C	c.(568-570)AAG>CAG	p.K190Q	WASH3P_uc002cdl.2_Missense_Mutation_p.K190Q|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.K190Q|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						GCTGGAGAAGAAGCAGCAGAA	0.662													4	145					0	0	0.000248	0	0
PIGQ	9091	broad.mit.edu	37	16	630960	630960	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:630960T>C	uc002cho.2	+	9	1621	c.1519T>C	c.(1519-1521)TAC>CAC	p.Y507H	PIGQ_uc010bqw.2_Missense_Mutation_p.Y507H|PIGQ_uc002chn.2_Missense_Mutation_p.Y507H|PIGQ_uc010uui.1_Missense_Mutation_p.Y521H|PIGQ_uc002chp.2_5'Flank	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	507	Leu-rich.				C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				CTGCCGGCCCTACAGGCTGGC	0.657													4	591					0	0	0.001168	0	0
NPIP	9284	broad.mit.edu	37	16	15045638	15045638	+	Missense_Mutation	SNP	T	A	A	rs143191947	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:15045638T>A	uc002dcy.3	+	8	809	c.809T>A	c.(808-810)CTG>CAG	p.L270Q	NPIP_uc002dcx.3_RNA	NM_006985	NP_008916	Q9UND3	NPIP_HUMAN	nuclear pore complex interacting protein	270	Pro-rich.				mRNA transport|protein transport|transmembrane transport	nuclear membrane|nuclear pore					0						TCCGAGTGTCTGCTCACTCCC	0.512													5	568					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	16	29415043	29415043	+	Translation_Start_Site	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:29415043G>A	uc010vct.1	-	1	767	c.-14C>T	c.(-16--12)CACGT>CATGT		RUNDC2C_uc010bys.1_RNA					RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		CTGACTTTACGTGCTGCTGCA	0.577													4	52					0	0	0.000248	0	0
SPN	6693	broad.mit.edu	37	16	29675300	29675300	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:29675300G>A	uc002dtm.2	+	2	387	c.251G>A	c.(250-252)AGC>AAC	p.S84N	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SPN_uc002dtn.2_Missense_Mutation_p.S84N|SPN_uc010bzd.2_RNA	NM_001030288	NP_001025459	P16150	LEUK_HUMAN	sialophorin precursor	84	Extracellular (Potential).				blood coagulation|cellular defense response|chemotaxis|defense response to bacterium|establishment or maintenance of cell polarity|immune response|leukocyte migration|negative regulation of cell adhesion|positive regulation of tumor necrosis factor biosynthetic process	extracellular space|integral to plasma membrane	bacterial cell surface binding|transmembrane receptor activity			central_nervous_system(2)	2						ATTGGTGCCAGCACTGGTTCC	0.547													5	619					0	0	0.004482	0	0
C16orf48	84080	broad.mit.edu	37	16	67697392	67697392	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:67697392C>A	uc002etw.1	-	6	1094	c.811G>T	c.(811-813)GCC>TCC	p.A271S	ACD_uc002etp.3_5'Flank|ACD_uc002etq.3_5'Flank|ACD_uc002etr.3_5'Flank|ACD_uc010vjt.1_5'Flank|C16orf48_uc002etv.1_Missense_Mutation_p.A153S|C16orf48_uc010cem.1_Missense_Mutation_p.C216F	NM_032140	NP_115516	Q9H0I2	CP048_HUMAN	hypothetical protein LOC84080	271						microtubule cytoskeleton	protein binding				0		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		GGGGGCATGGCAGGGTCCGGC	0.672													15	269					2.31682e-05	2.7574e-05	0.003163	1	0
COG8	84342	broad.mit.edu	37	16	69368887	69368887	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:69368887C>T	uc002ewy.2	-	3	1021	c.950G>A	c.(949-951)GGC>GAC	p.G317D	COG8_uc002ewz.3_Missense_Mutation_p.G317D	NM_032382	NP_115758	Q96MW5	COG8_HUMAN	component of oligomeric golgi complex 8	317					protein transport	Golgi membrane|Golgi transport complex				ovary(1)	1						TAGCACCCAGCCATGGAAGAT	0.587													4	221					0	0	0.000248	0	0
KLHDC4	54758	broad.mit.edu	37	16	87790046	87790046	+	Nonsense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:87790046C>A	uc002fki.2	-	3	275	c.229G>T	c.(229-231)GAG>TAG	p.E77*	KLHDC4_uc002fkj.2_Nonsense_Mutation_p.E77*|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_5'UTR	NM_017566	NP_060036	Q8TBB5	KLDC4_HUMAN	kelch domain containing 4	77	Kelch 1.									pancreas(2)	2				BRCA - Breast invasive adenocarcinoma(80;0.0283)		AGGATTAACTCATCTTTCTCA	0.438													7	241					1.12685e-05	1.34999e-05	0.004482	1	0
ANKRD11	29123	broad.mit.edu	37	16	89351844	89351844	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:89351844T>C	uc002fmx.1	-	9	1567	c.1106A>G	c.(1105-1107)AAG>AGG	p.K369R	ANKRD11_uc002fmy.1_Missense_Mutation_p.K369R|ANKRD11_uc002fnc.1_Missense_Mutation_p.K369R|ANKRD11_uc002fnb.1_Missense_Mutation_p.K326R	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	369						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TCTGTAGTCCTTTTTCAATAG	0.453													9	693					0	0	0.008291	0	0
SPG7	6687	broad.mit.edu	37	16	89614522	89614522	+	Splice_Site	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:89614522G>A	uc002fnj.2	+	12	1684	c.1663_splice	c.e12+1	p.G555_splice	SPG7_uc002fnk.1_Splice_Site|SPG7_uc002fnl.2_5'Flank	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1						cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		GTCCTCGCAGGTACAGGGGGC	0.622													5	268					0	0	0.000602	0	0
DPEP1	1800	broad.mit.edu	37	16	89704316	89704316	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:89704316G>A	uc010cin.2	+	10	1205	c.1002G>A	c.(1000-1002)ACG>ACA	p.T334T	DPEP1_uc002fnr.3_Silent_p.T334T|DPEP1_uc002fns.3_Silent_p.T334T	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	334					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	GGAACTGGACGGAGGCGGAGG	0.637													3	116					0	0	0.004672	0	0
PRDM7	11105	broad.mit.edu	37	16	90126912	90126912	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:90126912G>T	uc010cje.2	-	9	1090	c.1070C>A	c.(1069-1071)TCT>TAT	p.S357Y	PRDM7_uc002fqo.2_Intron|PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjg.1_Missense_Mutation_p.S151Y	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	357	SET.			S -> Y (in Ref. 2; AAF78084).		chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		CTCATCCCCAGACCAGACCAG	0.532													6	410					8.12818e-05	9.61085e-05	0.001984	1	0
RAP1GAP2	23108	broad.mit.edu	37	17	2898697	2898697	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:2898697G>A	uc010ckd.2	+	13	1071	c.981G>A	c.(979-981)CGG>CGA	p.R327R	RAP1GAP2_uc010cke.2_Silent_p.R312R	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	327	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						CAACATTCCGGGACAGGGAGA	0.567													6	812					0	0	0.001984	0	0
ACADVL	37	broad.mit.edu	37	17	7128329	7128329	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:7128329G>A	uc002gev.2	+	20	2032	c.1881G>A	c.(1879-1881)CAG>CAA	p.Q627Q	ACADVL_uc010vtp.1_Silent_p.Q637Q|ACADVL_uc002gew.2_Silent_p.Q605Q|ACADVL_uc002gex.2_Silent_p.Q551Q|uc002gey.1_5'Flank|MIR324_hsa-mir-324|MI0000813_5'Flank	NM_000018	NP_000009	P49748	ACADV_HUMAN	acyl-Coenzyme A dehydrogenase, very long chain	627					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial inner membrane|mitochondrial nucleoid	long-chain-acyl-CoA dehydrogenase activity			ovary(3)	3						ACCCCTGGCAGCAAGAGCTCT	0.637													5	402					0	0	0.001168	0	0
FXR2	9513	broad.mit.edu	37	17	7499190	7499190	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:7499190G>A	uc002gia.1	-	8	1010	c.783C>T	c.(781-783)ACC>ACT	p.T261T	FXR2_uc010vud.1_Silent_p.T261T	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	261	KH 1.					cytosolic large ribosomal subunit	protein binding|RNA binding				0				READ - Rectum adenocarcinoma(115;0.17)		ACTCAATGGCGGTCACCCCAG	0.547													4	346					0	0	0.000248	0	0
MYH4	4622	broad.mit.edu	37	17	10351193	10351193	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:10351193G>A	uc002gmn.2	-	34	5018	c.4907C>T	c.(4906-4908)GCC>GTC	p.A1636V	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1636	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTGGCGGTTGGCATGGTTCAG	0.453													8	758					0	0	0.003080	0	0
SUPT6H	6830	broad.mit.edu	37	17	27027213	27027213	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:27027213C>G	uc002hby.2	+	34	4674	c.4584C>G	c.(4582-4584)AGC>AGG	p.S1528R	SUPT6H_uc010crt.2_Missense_Mutation_p.S1528R	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1528	Poly-Ser.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					GCAGCAGCAGCAGGACCCGGA	0.542													5	838					0	0	0.001984	0	0
PLXDC1	57125	broad.mit.edu	37	17	37234205	37234205	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:37234205T>C	uc002hrg.2	-	11	1359	c.1147A>G	c.(1147-1149)ACC>GCC	p.T383A	uc002hre.1_Intron|uc002hrf.1_Intron|PLXDC1_uc010cvr.1_Missense_Mutation_p.T91A|PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	383	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						GAGGAGGAGGTAGTGGTGAGG	0.602													5	384					0	0	0.001984	0	0
KRT26	353288	broad.mit.edu	37	17	38928255	38928255	+	Silent	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:38928255C>T	uc002hvf.2	-	1	157	c.111G>A	c.(109-111)TCG>TCA	p.S37S		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	37	Head.|Gly-rich.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				TTCTTGCTCCCGATCCAACAC	0.557													12	849					0	0	0.000978	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39280087	39280087	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:39280087G>A	uc002hwa.2	-	1	333	c.288C>T	c.(286-288)TGC>TGT	p.C96C		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	96	17.|31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGGTGGGCTGGCAGCACACAG	0.512													8	702					0	0	0.001855	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39280114	39280114	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:39280114T>C	uc002hwa.2	-	1	306	c.261A>G	c.(259-261)AGA>AGG	p.R87R		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	87	15.|31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCACTGGGGTCTGCAGCAGC	0.607													6	682					0	0	0.003080	0	0
KRTAP4-4	84616	broad.mit.edu	37	17	39316759	39316759	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:39316759T>C	uc002hwc.2	-	1	225	c.185A>G	c.(184-186)CAC>CGC	p.H62R		NM_032524	NP_115913	Q9BYR3	KRA44_HUMAN	keratin associated protein 4.4	62	9.|26 X 5 AA repeats of C-C-[GRQVCH]-[SPT]- [VSTQR].		Missing (in allele KAP4.13).|Missing (in allele KAP4.4-v1).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			GCAGCTGGGGTGGCAGCAGGT	0.662													7	521					0	0	0.004482	0	0
TUBG1	7283	broad.mit.edu	37	17	40766929	40766929	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:40766929G>A	uc002ian.2	+	11	1624	c.1226G>A	c.(1225-1227)CGC>CAC	p.R409H		NM_001070	NP_001061	P23258	TBG1_HUMAN	tubulin, gamma 1	409					G2/M transition of mitotic cell cycle|meiotic spindle organization|protein polymerization	condensed nuclear chromosome|cytosol|gamma-tubulin complex|polar microtubule	GTP binding|GTPase activity|protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.129)		GAGCAGTTCCGCAAGGAGGAC	0.542													6	705					0	0	0.001168	0	0
GPATCH8	23131	broad.mit.edu	37	17	42476039	42476039	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:42476039G>A	uc002igw.1	-	8	3470	c.3406C>T	c.(3406-3408)CCC>TCC	p.P1136S	GPATCH8_uc002igv.1_Missense_Mutation_p.P1058S|GPATCH8_uc010wiz.1_Missense_Mutation_p.P1058S	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	1136						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		AGAGATGGGGGGAGCTTGGGC	0.557													5	705					0	0	0.001168	0	0
EME1	146956	broad.mit.edu	37	17	48453272	48453272	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:48453272G>A	uc002iqs.1	+	2	776	c.703G>A	c.(703-705)GCA>ACA	p.A235T	MRPL27_uc002iqq.2_5'Flank|MRPL27_uc002iqr.2_5'Flank|EME1_uc010dbp.1_Missense_Mutation_p.A235T	NM_152463	NP_689676	Q96AY2	EME1_HUMAN	essential meiotic endonuclease 1 homolog 1	235					DNA recombination|DNA repair	nucleolus	DNA binding|endonuclease activity|metal ion binding|protein binding				0	Breast(11;5.62e-19)		BRCA - Breast invasive adenocarcinoma(22;2.43e-08)			AAAGAATGCAGCACTGGTTAC	0.517								Direct_reversal_of_damage|Homologous_recombination					5	532					0	0	0.000602	0	0
VEZF1	7716	broad.mit.edu	37	17	56060697	56060697	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:56060697G>T	uc002ivf.1	-	2	234	c.91C>A	c.(91-93)CTG>ATG	p.L31M	VEZF1_uc010dcn.1_Translation_Start_Site	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	31					cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						GCAGAGCTCAGGAGGGGCAGC	0.498													11	662					1.08611e-07	1.36895e-07	0.000978	1	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373													7	441					0	0	0.004482	0	0
RAB12	201475	broad.mit.edu	37	18	8609872	8609872	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr18:8609872C>A	uc002knp.2	+	1	430	c.147C>A	c.(145-147)GGC>GGA	p.G49G	RAB12_uc002kno.1_Silent_p.G145G	NM_001025300	NP_001020471	Q6IQ22	RAB12_HUMAN	RAB12, member RAS oncogene family	49	GTP.				protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding				0						TCATTATCGGCTCCCGCGGCG	0.652													11	100					6.72482e-11	8.78097e-11	0.003163	1	0
ZNF516	9658	broad.mit.edu	37	18	74154244	74154244	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr18:74154244G>T	uc010dqx.1	-	2	1002	c.767C>A	c.(766-768)GCC>GAC	p.A256D	ZNF516_uc002lme.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	256	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		CTGGCTGAAGGCCTGGCCACA	0.687													12	76					2.27111e-07	2.82333e-07	0.001368	1	0
ATP9B	374868	broad.mit.edu	37	18	77135425	77135425	+	Silent	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr18:77135425A>G	uc002lmx.2	+	29	3320	c.3306A>G	c.(3304-3306)TTA>TTG	p.L1102L	ATP9B_uc002lmw.1_Intron|ATP9B_uc002lna.2_Intron|ATP9B_uc010drb.2_RNA	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	1102	Extracellular (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		GAGCTTTCTTAGGTAGGTAAA	0.308													3	188					0	0	0.000602	0	0
UQCR11	10975	broad.mit.edu	37	19	1605381	1605381	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:1605381A>G	uc002ltm.2	-	1	51	c.28T>C	c.(28-30)TAC>CAC	p.Y10H		NM_006830	NP_006821	O14957	QCR10_HUMAN	ubiquinol-cytochrome c reductase, 6.4kDa	10					respiratory electron transport chain	integral to membrane|mitochondrial inner membrane|respiratory chain	electron carrier activity			ovary(1)|breast(1)	2						AGCTCCCGGTAGCGTGGGCCC	0.657													3	60					0	0	0.004672	0	0
ZNF57	126295	broad.mit.edu	37	19	2917807	2917807	+	Missense_Mutation	SNP	A	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:2917807A>C	uc002lwr.2	+	4	1336	c.1188A>C	c.(1186-1188)CAA>CAC	p.Q396H	ZNF57_uc010xha.1_Missense_Mutation_p.Q364H	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	396	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AATGTGAACAATGTGGGAAGG	0.428													5	325					0	0	0.001984	0	0
DENND1C	79958	broad.mit.edu	37	19	6479014	6479014	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:6479014G>A	uc002mfe.2	-	5	322	c.230C>T	c.(229-231)GCC>GTC	p.A77V	DENND1C_uc002mfb.2_5'Flank|DENND1C_uc002mfc.2_5'Flank|DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Missense_Mutation_p.A33V	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	77	UDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GCGGTTGCCGGCAAGGTCTGT	0.642													6	576					0	0	0.000978	0	0
CD209	30835	broad.mit.edu	37	19	7810698	7810698	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:7810698A>G	uc002mht.2	-	4	521	c.454T>C	c.(454-456)TGG>CGG	p.W152R	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.W128R|CD209_uc002mhr.2_Missense_Mutation_p.W128R|CD209_uc002mhs.2_Missense_Mutation_p.W128R|CD209_uc002mhu.2_Missense_Mutation_p.W152R|CD209_uc010dvq.2_Missense_Mutation_p.W152R|CD209_uc002mhq.2_Missense_Mutation_p.W152R|CD209_uc002mhv.2_Missense_Mutation_p.W128R|CD209_uc002mhx.2_Missense_Mutation_p.W108R|CD209_uc002mhw.2_Missense_Mutation_p.W108R|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	152	Extracellular (Probable).|7 X approximate tandem repeats.|3.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GCCTTCAGCCAGGTCAGCTCC	0.557													11	849					0	0	0.001855	0	0
CD209	30835	broad.mit.edu	37	19	7810766	7810766	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:7810766C>T	uc002mht.2	-	4	453	c.386G>A	c.(385-387)CGG>CAG	p.R129Q	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.R105Q|CD209_uc002mhr.2_Missense_Mutation_p.R105Q|CD209_uc002mhs.2_Missense_Mutation_p.R105Q|CD209_uc002mhu.2_Missense_Mutation_p.R129Q|CD209_uc010dvq.2_Missense_Mutation_p.R129Q|CD209_uc002mhq.2_Missense_Mutation_p.R129Q|CD209_uc002mhv.2_Missense_Mutation_p.R105Q|CD209_uc002mhx.2_Missense_Mutation_p.R85Q|CD209_uc002mhw.2_Missense_Mutation_p.R85Q|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	129	Extracellular (Probable).|2.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						AGCCTTCAGCCGGGTCAGCTC	0.567													10	811					0	0	0.006214	0	0
CD209	30835	broad.mit.edu	37	19	7810835	7810835	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:7810835T>C	uc002mht.2	-	4	384	c.317A>G	c.(316-318)CAG>CGG	p.Q106R	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.Q82R|CD209_uc002mhr.2_Missense_Mutation_p.Q82R|CD209_uc002mhs.2_Missense_Mutation_p.Q82R|CD209_uc002mhu.2_Missense_Mutation_p.Q106R|CD209_uc010dvq.2_Missense_Mutation_p.Q106R|CD209_uc002mhq.2_Missense_Mutation_p.Q106R|CD209_uc002mhv.2_Missense_Mutation_p.Q82R|CD209_uc002mhx.2_Missense_Mutation_p.Q62R|CD209_uc002mhw.2_Missense_Mutation_p.Q62R|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	106	1.|Extracellular (Probable).|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						AGCCTTCAGCTGGGTCAGCTC	0.562													7	779					0	0	0.008291	0	0
FBN3	84467	broad.mit.edu	37	19	8201112	8201112	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:8201112G>A	uc002mjf.2	-	11	1448	c.1427C>T	c.(1426-1428)CCG>CTG	p.P476L		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	476	EGF-like 4; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CTGGAAGCCCGGGTAGCACCG	0.647													4	378					0	0	0.000248	0	0
SMARCA4	6597	broad.mit.edu	37	19	11100022	11100022	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:11100022A>G	uc002mqf.3	+	7	1432	c.1148A>G	c.(1147-1149)CAG>CGG	p.Q383R	SMARCA4_uc010dxp.2_Missense_Mutation_p.Q383R|SMARCA4_uc010dxo.2_Missense_Mutation_p.Q383R|SMARCA4_uc002mqg.1_Missense_Mutation_p.Q383R|SMARCA4_uc010dxq.2_Missense_Mutation_p.Q383R|SMARCA4_uc010dxr.2_Missense_Mutation_p.Q383R|SMARCA4_uc002mqj.3_Missense_Mutation_p.Q383R|SMARCA4_uc010dxs.2_Missense_Mutation_p.Q383R|SMARCA4_uc002mqe.2_Missense_Mutation_p.Q383R	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	383					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				CACCGAATTCAGGAACTTGAA	0.602			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				4	588					0	0	0.000602	0	0
ZNF844	284391	broad.mit.edu	37	19	12187275	12187275	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:12187275G>C	uc002mtb.2	+	4	1483	c.1340G>C	c.(1339-1341)CGT>CCT	p.R447P	ZNF844_uc010dym.1_Missense_Mutation_p.R290P	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	447					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGAGAAACCGTATGAGTGTA	0.433													6	357					0	0	0.001984	0	0
ZNF563	147837	broad.mit.edu	37	19	12429554	12429554	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:12429554C>T	uc002mtp.2	-	4	1523	c.1285G>A	c.(1285-1287)GCG>ACG	p.A429T		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	429	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGATAACGCTTTCCCACAC	0.428													7	785					0	0	0.006214	0	0
ZNF563	147837	broad.mit.edu	37	19	12429722	12429722	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:12429722T>C	uc002mtp.2	-	4	1355	c.1117A>G	c.(1117-1119)ACG>GCG	p.T373A		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGATAACGTTTTCCCACAC	0.413													7	788					0	0	0.003163	0	0
ZNF563	147837	broad.mit.edu	37	19	12430083	12430083	+	Silent	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:12430083C>T	uc002mtp.2	-	4	994	c.756G>A	c.(754-756)CCG>CCA	p.P252P	ZNF563_uc002mtq.2_Missense_Mutation_p.R213H	NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	252					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TACATTCATACGGTTTCTCCC	0.403													5	789					0	0	0.004482	0	0
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:12501446T>C	uc010dyt.2	-	4	1916	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	589	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCTTACATTCATACGGGTT	0.413													6	318					0	0	0.003080	0	0
ZNF333	84449	broad.mit.edu	37	19	14805849	14805849	+	Missense_Mutation	SNP	G	A	A	rs143812920	byFrequency	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:14805849G>A	uc002mzn.2	+	3	165	c.31G>A	c.(31-33)GTG>ATG	p.V11M	ZNF333_uc010dzq.2_Missense_Mutation_p.V11M|ZNF333_uc002mzk.3_Translation_Start_Site|ZNF333_uc002mzl.3_Missense_Mutation_p.V11M|ZNF333_uc002mzm.2_Missense_Mutation_p.V11M|ZNF333_uc010dzr.1_RNA	NM_032433	NP_115809	Q96JL9	ZN333_HUMAN	zinc finger protein 333	11	KRAB 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGATGTGGCCGTGGAGTTCAT	0.562													5	675					0	0	0.004482	0	0
TMEM161A	54929	broad.mit.edu	37	19	19245591	19245591	+	Splice_Site	SNP	A	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:19245591A>C	uc002nlg.2	-	2	137	c.107_splice	c.e2+1	p.S36_splice	TMEM161A_uc010eca.2_Splice_Site|TMEM161A_uc002nlh.2_Splice_Site_p.S36_splice|TMEM161A_uc002nli.2_Splice_Site_p.S36_splice|TMEM161A_uc002nlj.2_Intron	NM_017814	NP_060284	Q9NX61	T161A_HUMAN	transmembrane protein 161A precursor						cellular response to oxidative stress|cellular response to UV|negative regulation of apoptosis|positive regulation of DNA repair|response to retinoic acid	integral to membrane				breast(2)	2			OV - Ovarian serous cystadenocarcinoma(5;1.19e-05)|Epithelial(12;0.0011)			GGCGGGGCTCACCTGCCGTTA	0.672													3	28					0	0	0.000602	0	0
LOC284441	284441	broad.mit.edu	37	19	20369782	20369782	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:20369782C>T	uc002nov.2	+	1	1326	c.575C>T	c.(574-576)CCA>CTA	p.P192L		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						TATACACTCCCAGATGGAGGA	0.398													4	269					0	0	0.003080	0	0
ZNF208	7757	broad.mit.edu	37	19	22155896	22155896	+	Missense_Mutation	SNP	A	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:22155896A>C	uc002nqp.2	-	5	1789	c.1640T>G	c.(1639-1641)ATT>AGT	p.I547S	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAGACCTTAATAAAGGTTTT	0.398													9	489					0	0	0.000978	0	0
ZNF91	7644	broad.mit.edu	37	19	23544867	23544867	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:23544867T>C	uc002nre.2	-	4	1027	c.914A>G	c.(913-915)CAT>CGT	p.H305R	ZNF91_uc010xrj.1_Missense_Mutation_p.H273R	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	305	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAATGGCTAAAAGC	0.413													8	622					0	0	0.000978	0	0
ZNF254	9534	broad.mit.edu	37	19	24310238	24310238	+	Missense_Mutation	SNP	G	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:24310238G>C	uc002nru.2	+	4	1570	c.1436G>C	c.(1435-1437)AGA>ACA	p.R479T	ZNF254_uc010xrk.1_Missense_Mutation_p.R394T	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	479	C2H2-type 10.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				ACCCTAACTAGACATAAGAGG	0.383													4	488					0	0	0.001168	0	0
SLC7A10	56301	broad.mit.edu	37	19	33699842	33699842	+	Silent	SNP	T	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:33699842T>G	uc002num.2	-	11	1674	c.1527A>C	c.(1525-1527)CCA>CCC	p.P509P	SLC7A10_uc002nul.2_Silent_p.P356P	NM_019849	NP_062823	Q9NS82	AAA1_HUMAN	solute carrier family 7, member 10	509					blood coagulation|cellular nitrogen compound metabolic process|ion transport|leukocyte migration	integral to plasma membrane	L-serine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(110;0.137)					GCAGGGAGGGTGGGCAGGGGC	0.547													19	148					0	0	0.008740	0	0
ZNF599	148103	broad.mit.edu	37	19	35258305	35258305	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:35258305G>A	uc010edn.1	-	3	545	c.157C>T	c.(157-159)CCC>TCC	p.P53S	ZNF599_uc010edm.1_Missense_Mutation_p.P16S|ZNF599_uc010xsd.1_RNA|ZNF599_uc010edo.1_RNA	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	53	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TCTGGTTTGGGAACAGGATGC	0.458													4	210					0	0	0.000248	0	0
FCGBP	8857	broad.mit.edu	37	19	40398010	40398010	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:40398010G>A	uc002omp.3	-	14	6965	c.6957C>T	c.(6955-6957)GCC>GCT	p.A2319A		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2319						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGGCCCCAGCGGCCTGACAGG	0.652													10	186					0	0	0.002450	0	0
PNMAL2	57469	broad.mit.edu	37	19	46998201	46998201	+	Silent	SNP	G	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:46998201G>C	uc002pes.2	-	1	969	c.522C>G	c.(520-522)ACC>ACG	p.T174T	uc002peu.1_Missense_Mutation_p.W104C	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	174										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		TGCCCTTCTGGGTCAACCTGT	0.647													9	468					0	0	0.006214	0	0
NLRP8	126205	broad.mit.edu	37	19	56466799	56466799	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:56466799G>A	uc002qmh.2	+	3	1446	c.1375G>A	c.(1375-1377)GCA>ACA	p.A459T	NLRP8_uc010etg.2_Missense_Mutation_p.A459T	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	459	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCACTTGGCCGCAGACAGCAT	0.498													5	594					0	0	0.000602	0	0
ZNF749	388567	broad.mit.edu	37	19	57955948	57955948	+	Missense_Mutation	SNP	A	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:57955948A>C	uc002qoq.2	+	3	1686	c.1432A>C	c.(1432-1434)ATT>CTT	p.I478L	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	478					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		GAGGATTGACATTAGGCCAAG	0.458													5	214					0	0	0.001168	0	0
ZNF749	388567	broad.mit.edu	37	19	57955950	57955950	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:57955950T>C	uc002qoq.2	+	3	1688	c.1434T>C	c.(1432-1434)ATT>ATC	p.I478I	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	478					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		GGATTGACATTAGGCCAAGGC	0.458													5	207					0	0	0.001168	0	0
C2orf71	388939	broad.mit.edu	37	2	29295748	29295748	+	Silent	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:29295748C>T	uc002rmt.1	-	1	1380	c.1380G>A	c.(1378-1380)GGG>GGA	p.G460G		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	460					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						AGACCCCAATCCCAAAGGAAT	0.557													8	359					0	0	0.003080	0	0
HEATR5B	54497	broad.mit.edu	37	2	37215975	37215975	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:37215975G>A	uc002rpp.1	-	35	5821	c.5725C>T	c.(5725-5727)CTC>TTC	p.L1909F	HEATR5B_uc002rpo.1_Missense_Mutation_p.L221F|HEATR5B_uc010ezy.1_Missense_Mutation_p.L404F	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1909							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				AAGACTGAGAGGAGAAGCTGG	0.353													4	393					0	0	0.000602	0	0
CYP26B1	56603	broad.mit.edu	37	2	72360201	72360201	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:72360201G>A	uc002sih.1	-	5	1097	c.1097C>T	c.(1096-1098)ACG>ATG	p.T366M	CYP26B1_uc010yra.1_Missense_Mutation_p.T349M|CYP26B1_uc010yrb.1_Missense_Mutation_p.T291M	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	366					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						GGAAATGGGCGTGAACAGGCG	0.687													4	354					0	0	0.001168	0	0
IMMT	10989	broad.mit.edu	37	2	86374895	86374895	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:86374895G>A	uc002sqz.3	-	13	1851	c.1463C>T	c.(1462-1464)GCT>GTT	p.A488V	IMMT_uc002sqy.3_Missense_Mutation_p.A229V|IMMT_uc002srb.3_Missense_Mutation_p.A477V|IMMT_uc002sra.3_Missense_Mutation_p.A487V|IMMT_uc010ytd.1_Missense_Mutation_p.A476V|IMMT_uc010yte.1_Missense_Mutation_p.A441V|IMMT_uc002src.1_Missense_Mutation_p.A224V	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	488	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						AGTGTGGGCAGCTGCCTGTCG	0.458													4	323					0	0	0.000248	0	0
TEKT4	150483	broad.mit.edu	37	2	95537377	95537377	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:95537377C>A	uc002stw.1	+	1	146	c.53C>A	c.(52-54)GCC>GAC	p.A18D	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	18					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						TACGACGTGGCCCGTAACACG	0.667													9	105					1.08611e-07	1.36895e-07	0.000978	1	0
RGPD3	653489	broad.mit.edu	37	2	107049631	107049631	+	Silent	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:107049631C>T	uc010ywi.1	-	16	2373	c.2316G>A	c.(2314-2316)GCG>GCA	p.A772A		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	772					intracellular transport		binding			ovary(1)	1						TTTCTGAATCCGCATTTCGCA	0.373													7	699					0	0	0.006214	0	0
PSD4	23550	broad.mit.edu	37	2	113958812	113958812	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:113958812G>A	uc002tjc.2	+	17	3174	c.2991G>A	c.(2989-2991)GAG>GAA	p.E997E	PSD4_uc002tjd.2_Silent_p.E617E|PSD4_uc002tje.2_Silent_p.E967E|PSD4_uc002tjf.2_Silent_p.E618E|PSD4_uc002tjg.2_Silent_p.E163E|PSD4_uc010yxs.1_Silent_p.E227E|PSD4_uc002tjh.2_Silent_p.E184E	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	997					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						ACCTGTGGGAGGAGCAGCTGG	0.652													6	663					0	0	0.003080	0	0
FOXD4L1	200350	broad.mit.edu	37	2	114257073	114257073	+	Silent	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:114257073C>T	uc002tjw.3	+	1	413	c.240C>T	c.(238-240)AGC>AGT	p.S80S		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	80					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						GCGGCCCGAGCGACCCCTCAG	0.697													6	481					0	0	0.001984	0	0
EN1	2019	broad.mit.edu	37	2	119600586	119600586	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:119600586C>A	uc002tlm.2	-	2	2123	c.1107G>T	c.(1105-1107)GCG>GCT	p.A369A		NM_001426	NP_001417	Q05925	HME1_HUMAN	engrailed homeobox 1	369					skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|lung(1)	2						TGAGGTGCAGCGCCAGGCCGT	0.527													8	283					1.08611e-07	1.36895e-07	0.000978	1	0
TBR1	10716	broad.mit.edu	37	2	162274729	162274729	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:162274729C>A	uc002ubw.1	+	3	1167	c.865C>A	c.(865-867)CAT>AAT	p.H289N	TBR1_uc010foy.2_Missense_Mutation_p.H2N	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	289	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						GGTCTATATGCATCCGGATTC	0.428													9	235					2.80697e-09	3.61323e-09	0.000978	1	0
TTN	7273	broad.mit.edu	37	2	179480115	179480115	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:179480115C>T	uc010zfg.1	-	208	41077	c.40853G>A	c.(40852-40854)CGC>CAC	p.R13618H	TTN_uc010zfh.1_Missense_Mutation_p.R7313H|TTN_uc010zfi.1_Missense_Mutation_p.R7246H|TTN_uc010zfj.1_Missense_Mutation_p.R7121H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14545							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTTGATGCGTGAACCACC	0.423													5	634					0	0	0.003080	0	0
GTF3C3	9330	broad.mit.edu	37	2	197657782	197657782	+	Silent	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:197657782C>T	uc002uts.2	-	3	399	c.309G>A	c.(307-309)GAG>GAA	p.E103E	GTF3C3_uc010zgu.1_Silent_p.E103E|GTF3C3_uc002utu.2_Silent_p.E103E	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	103	Glu-rich.					transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						cctcctcctcctcttcttcct	0.343													9	182					0	0	0.000978	0	0
ABI2	10152	broad.mit.edu	37	2	204193328	204193328	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:204193328G>A	uc002vaa.2	+	1	326	c.91G>A	c.(91-93)GAT>AAT	p.D31N	ABI2_uc010zig.1_RNA|ABI2_uc002uzz.2_Missense_Mutation_p.D31N|ABI2_uc010zih.1_5'UTR|ABI2_uc010zii.1_Missense_Mutation_p.D31N|ABI2_uc010zij.1_5'UTR	NM_005759	NP_005750	Q9NYB9	ABI2_HUMAN	abl interactor 2	31					actin polymerization or depolymerization|cell migration|peptidyl-tyrosine phosphorylation	cytoskeleton|cytosol|filopodium|lamellipodium	cytoskeletal adaptor activity|DNA binding|kinase binding|proline-rich region binding|SH3 domain binding|ubiquitin protein ligase binding				0						ACGGGTGGCCGATTACTGCGA	0.418													4	179					0	0	0.001984	0	0
PTPRN	5798	broad.mit.edu	37	2	220162727	220162727	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:220162727C>A	uc002vkz.2	-	13	1856	c.1767G>T	c.(1765-1767)GGG>GGT	p.G589G	PTPRN_uc010zlc.1_Silent_p.G499G|PTPRN_uc002vla.2_Silent_p.G560G	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	589	Helical; (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		CCACCAGCAGCCCAGCCACAC	0.677													16	209					1.99824e-07	2.50124e-07	0.004990	1	0
COL4A4	1286	broad.mit.edu	37	2	227945177	227945177	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:227945177T>C	uc010zlt.1	-	24	2439	c.1785A>G	c.(1783-1785)AAA>AAG	p.K595K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	595	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CTGGATCCCCTTTTTCTCCAG	0.463													4	701					0	0	0.001984	0	0
INPP5D	3635	broad.mit.edu	37	2	234072498	234072498	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:234072498G>A	uc010zmo.1	+	11	1539	c.1386G>A	c.(1384-1386)CTG>CTA	p.L462L	INPP5D_uc010zmp.1_Silent_p.L461L	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	462					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		AGGAGTGGCTGGAGATCCTCA	0.557													4	331					0	0	0.000248	0	0
FRG1B	284802	broad.mit.edu	37	20	29625956	29625956	+	Missense_Mutation	SNP	G	A	A	rs147809085		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:29625956G>A	uc010ztl.1	+	2	142	c.110G>A	c.(109-111)AGA>AAA	p.R37K	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATTGGACCAAGAGAACAATGG	0.338													5	381					0	0	0.002450	0	0
FRG1B	284802	broad.mit.edu	37	20	29625971	29625971	+	Missense_Mutation	SNP	C	A	A	rs145033899		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:29625971C>A	uc010ztl.1	+	2	157	c.125C>A	c.(124-126)CCA>CAA	p.P42Q	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						CAATGGGAACCAGTCTTTCAA	0.328													6	387					0.00136819	0.00157668	0.001368	1	0
DDX27	55661	broad.mit.edu	37	20	47852740	47852740	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:47852740G>A	uc002xuh.2	+	13	1635	c.1574G>A	c.(1573-1575)CGT>CAT	p.R525H		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	525	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GTGGCAGCCCGTGGACTTGAC	0.512													5	585					0	0	0.000602	0	0
PCK1	5105	broad.mit.edu	37	20	56138183	56138183	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:56138183G>A	uc002xyn.3	+	5	873	c.710G>A	c.(709-711)GGG>GAG	p.G237E	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	237		Substrate; via amide nitrogen.			gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GGGTACGGCGGGAACTCGCTG	0.627													6	393					0	0	0.001168	0	0
TAF4	6874	broad.mit.edu	37	20	60578925	60578925	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:60578925G>A	uc002ybs.2	-	8	2233	c.2233C>T	c.(2233-2235)CAG>TAG	p.Q745*		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	745					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			TTCGGAGGCTGCTGGATGACC	0.647													4	189					0	0	0.001168	0	0
C21orf99	149992	broad.mit.edu	37	21	14439197	14439197	+	RNA	SNP	G	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr21:14439197G>C	uc002yja.3	+	10		c.2715G>C				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAAGAAGAGAAGAGAAGAA	0.289													14	139					0	0	0.003163	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43796648	43796648	+	Splice_Site	SNP	A	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr21:43796648A>T	uc002zbb.2	-	11	1395	c.1194_splice	c.e11+1	p.Q398_splice	TMPRSS3_uc002zay.2_Splice_Site_p.Q155_splice|TMPRSS3_uc002zaz.2_Splice_Site_p.Q271_splice|TMPRSS3_uc002zba.2_Splice_Site_p.Q271_splice|TMPRSS3_uc002zbc.2_Splice_Site_p.Q397_splice	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1						cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						GCGGCCCCGTACCTGGCAGCT	0.622											OREG0031642	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	5	286					0	0	0.000602	0	0
LRRC3	81543	broad.mit.edu	37	21	45877295	45877295	+	Silent	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr21:45877295G>T	uc002zfa.2	+	2	1061	c.768G>T	c.(766-768)GGG>GGT	p.G256G		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	256						integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		TCGGCCCGGGGCCCTAGCGCC	0.637													10	134					4.3838e-07	5.37608e-07	0.001855	1	0
PCNT	5116	broad.mit.edu	37	21	47754527	47754527	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr21:47754527A>G	uc002zji.3	+	3	591	c.484A>G	c.(484-486)AGT>GGT	p.S162G	PCNT_uc002zjj.2_Missense_Mutation_p.S44G|PCNT_uc010gqk.1_RNA	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	162					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GTTCACAGTCAGTGACCACCC	0.552													6	351					0	0	0.003080	0	0
SEPT5	5413	broad.mit.edu	37	22	19708382	19708382	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:19708382G>A	uc002zpv.1	+	8	832	c.707G>A	c.(706-708)CGG>CAG	p.R236Q	SEPT5_uc002zpw.1_RNA|SEPT5_uc002zpx.1_RNA|SEPT5_uc002zpy.1_5'UTR|SEPT5_uc002zpz.1_5'Flank	NM_002688	NP_002679	Q99719	SEPT5_HUMAN	septin 5	236					cell cycle|cytokinesis|regulation of exocytosis|synaptic vesicle targeting	plasma membrane|septin complex|synaptic vesicle	GTP binding|GTPase activity|protein binding|structural molecule activity			lung(1)	1	Colorectal(54;0.0993)					CAGCAGGACCGGGAACTGAAG	0.567													4	364					0	0	0.000248	0	0
LOC96610	96610	broad.mit.edu	37	22	22764336	22764336	+	RNA	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:22764336G>A	uc011aim.1	+	58		c.6123G>A								Parts of antibodies, mostly variable regions.												0						TGACGCAGCCGCCCTCAGTGT	0.582											OREG0026360	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	708					0	0	0.000602	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119801	38119801	+	Missense_Mutation	SNP	A	G	G	rs71317064		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:38119801A>G	uc003atr.2	+	7	1509	c.1238A>G	c.(1237-1239)AAA>AGA	p.K413R	TRIOBP_uc003atu.2_Missense_Mutation_p.K241R|TRIOBP_uc003atq.1_Missense_Mutation_p.K413R|TRIOBP_uc003ats.1_Missense_Mutation_p.K241R	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	413					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GACAATCCCAAAGCCTCCAGA	0.582													5	435					0	0	0.001168	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119859	38119859	+	Silent	SNP	C	T	T	rs66505048		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:38119859C>T	uc003atr.2	+	7	1567	c.1296C>T	c.(1294-1296)TGC>TGT	p.C432C	TRIOBP_uc003atu.2_Silent_p.C260C|TRIOBP_uc003atq.1_Silent_p.C432C|TRIOBP_uc003ats.1_Silent_p.C260C	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	432					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAACATCCTGCGCCCAGCGGG	0.582													12	457					0	0	0.004656	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120006	38120006	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:38120006T>C	uc003atr.2	+	7	1714	c.1443T>C	c.(1441-1443)TGT>TGC	p.C481C	TRIOBP_uc003atu.2_Silent_p.C309C|TRIOBP_uc003atq.1_Silent_p.C481C|TRIOBP_uc003ats.1_Silent_p.C309C	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	481					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAACATCCTGTGCCCAGCGGG	0.592													5	360					0	0	0.007413	0	0
EIF3L	51386	broad.mit.edu	37	22	38270460	38270460	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:38270460C>A	uc003auf.2	+	9	922	c.835C>A	c.(835-837)CGC>AGC	p.R279S	EIF3L_uc003aue.1_Missense_Mutation_p.R279S|EIF3L_uc011ann.1_Missense_Mutation_p.R231S|EIF3L_uc003aug.2_Missense_Mutation_p.R171S|EIF3L_uc003auh.2_Missense_Mutation_p.R12S	NM_016091	NP_057175	Q9Y262	EIF3L_HUMAN	eukaryotic translation initiation factor 3	279						eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1						CGGGCTTCTCCGCCTGCACTC	0.547													7	448					0.00198382	0.00226455	0.001984	1	0
MKL1	57591	broad.mit.edu	37	22	40816901	40816901	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:40816901C>G	uc003ayv.1	-	7	1038	c.831G>C	c.(829-831)CAG>CAC	p.Q277H	MKL1_uc003ayw.1_Missense_Mutation_p.Q277H|MKL1_uc010gye.1_Missense_Mutation_p.Q277H|MKL1_uc010gyf.1_Missense_Mutation_p.Q227H	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	277	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GCTGCTGCTGCTGGTTGAGGA	0.657			T	RBM15	acute megakaryocytic leukemia								6	255					0	0	0.001168	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50659212	50659212	+	Silent	SNP	A	G	G	rs141527317		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:50659212A>G	uc003bkb.1	-	16	4088	c.3576T>C	c.(3574-3576)TCT>TCC	p.S1192S	TUBGCP6_uc003bka.1_Silent_p.S279S|TUBGCP6_uc010har.1_Silent_p.S1184S|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1192	7.|9 X 27 AA tandem repeats.				G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TGCTGGCATCAGACACGTGTC	0.617													5	359					0	0	0.006214	0	0
CHKB	1120	broad.mit.edu	37	22	51021004	51021004	+	Silent	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:51021004C>G	uc003bms.2	-	1	425	c.207G>C	c.(205-207)CTG>CTC	p.L69L	CHKB-CPT1B_uc003bmt.1_5'UTR|CHKB-CPT1B_uc003bmu.2_5'UTR|CHKB_uc003bmv.2_Silent_p.L69L|LOC100144603_uc003bmw.3_5'Flank	NM_005198	NP_005189	Q9Y259	CHKB_HUMAN	choline kinase beta	69					phosphatidylethanolamine biosynthetic process		ATP binding|choline kinase activity|ethanolamine kinase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;4.04e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.79e-74)|Epithelial(4;6.17e-70)|GBM - Glioblastoma multiforme(4;5.68e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.205)	Choline(DB00122)	GGTAAACCCTCAGCTCCTCGG	0.706													4	116					0	0	0.000248	0	0
GRIP2	80852	broad.mit.edu	37	3	14536396	14536396	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:14536396C>A	uc011avi.1	-	24	3219	c.3219G>T	c.(3217-3219)GGG>GGT	p.G1073G	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Silent_p.G604G	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	975	PDZ 7.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GGTGGGCTGGCCCATCAGGGC	0.607													14	188					0.000219431	0.000257779	0.002450	1	0
ZNF860	344787	broad.mit.edu	37	3	32031962	32031962	+	Missense_Mutation	SNP	A	G	G	rs1808125	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:32031962A>G	uc011axg.1	+	2	1940	c.1391A>G	c.(1390-1392)CAT>CGT	p.H464R		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	464	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGACCTTCCATCACAATTCA	0.418													7	432					0	0	0.003080	0	0
ZNF860	344787	broad.mit.edu	37	3	32032046	32032046	+	Missense_Mutation	SNP	G	A	A	rs143925165	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:32032046G>A	uc011axg.1	+	2	2024	c.1475G>A	c.(1474-1476)CGT>CAT	p.R492H		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	492	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGACCTTCCGTCACAATTCA	0.403													9	534					0	0	0.008291	0	0
SCN5A	6331	broad.mit.edu	37	3	38591931	38591931	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:38591931C>G	uc003cio.2	-	28	6126	c.5932G>C	c.(5932-5934)GAC>CAC	p.D1978H	SCN5A_uc003cin.2_Missense_Mutation_p.D1977H|SCN5A_uc003cil.3_Missense_Mutation_p.D1978H|SCN5A_uc010hhi.2_Missense_Mutation_p.D1960H|SCN5A_uc010hhk.2_Missense_Mutation_p.D1945H|SCN5A_uc011ayr.1_Missense_Mutation_p.D1924H	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1978				D->A: No effect on interaction with NEDD4, NEDD4L or WWP2.	blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTGACACTGTCATAGGAGGGT	0.602													7	220					0	0	0.001984	0	0
MAP4	4134	broad.mit.edu	37	3	47958222	47958222	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:47958222G>A	uc003csb.2	-	7	1621	c.1095C>T	c.(1093-1095)GCC>GCT	p.A365A	MAP4_uc003csc.3_Silent_p.A365A|MAP4_uc011bbf.1_Silent_p.A342A|MAP4_uc003csf.3_Silent_p.A382A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	365	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGGGCTAAGTCCA	0.478													5	767					0	0	0.001168	0	0
MAP4	4134	broad.mit.edu	37	3	47958225	47958225	+	Silent	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:47958225T>C	uc003csb.2	-	7	1618	c.1092A>G	c.(1090-1092)TTA>TTG	p.L364L	MAP4_uc003csc.3_Silent_p.L364L|MAP4_uc011bbf.1_Silent_p.L341L|MAP4_uc003csf.3_Silent_p.L381L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	364	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGGGCTAAGTCCATTT	0.478													5	784					0	0	0.001984	0	0
RBM6	10180	broad.mit.edu	37	3	50005374	50005374	+	Silent	SNP	A	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:50005374A>T	uc003cyc.2	+	3	649	c.516A>T	c.(514-516)CCA>CCT	p.P172P	RBM6_uc011bdh.1_RNA|RBM6_uc010hlc.1_Intron|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	172					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		ATGCTCCTCCATCTGACTTCA	0.468													6	269					0	0	0.001168	0	0
GRM2	2912	broad.mit.edu	37	3	51746586	51746586	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:51746586G>A	uc010hlv.2	+	3	787	c.548G>A	c.(547-549)CGC>CAC	p.R183H	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	183	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	TACTTTGCCCGCACAGTGCCT	0.542													7	605					0	0	0.004482	0	0
STAB1	23166	broad.mit.edu	37	3	52555908	52555908	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:52555908G>A	uc003dej.2	+	58	6286	c.6212G>A	c.(6211-6213)CGT>CAT	p.R2071H	STAB1_uc003dek.1_Missense_Mutation_p.R86H|STAB1_uc003del.2_Translation_Start_Site	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2071	EGF-like 14.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GCTGTGTGCCGTGCAGGCAAC	0.647													5	384					0	0	0.001168	0	0
MAGI1	9223	broad.mit.edu	37	3	65425588	65425588	+	Silent	SNP	C	T	T	rs139785185		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:65425588C>T	uc003dmn.2	-	9	1762	c.1236G>A	c.(1234-1236)CAG>CAA	p.Q412Q	MAGI1_uc003dmm.2_Silent_p.Q412Q|MAGI1_uc003dmo.2_Silent_p.Q412Q|MAGI1_uc003dmp.2_Silent_p.Q412Q|MAGI1_uc010hny.2_Silent_p.Q297Q	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	412	Poly-Gln.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		gctgctgctgctgttgctgct	0.343											OREG0015658	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	311					0	0	0.004482	0	0
TRAT1	50852	broad.mit.edu	37	3	108549534	108549534	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:108549534T>C	uc003dxi.1	+	2	169	c.25T>C	c.(25-27)TTT>CTT	p.F9L	TRAT1_uc010hpx.1_Intron	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	9	Helical; Signal-anchor for type III membrane protein; (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						TGGGTGCCCCTTTTTCCTCTG	0.408													5	468					0	0	0.001984	0	0
ATP6V1A	523	broad.mit.edu	37	3	113505224	113505224	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:113505224T>C	uc003eao.2	+	6	776	c.710T>C	c.(709-711)CTT>CCT	p.L237P	ATP6V1A_uc011bik.1_Missense_Mutation_p.L204P	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	237					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						CTTGATGCCCTTTTTCCGTAA	0.423													6	787					0	0	0.003080	0	0
EAF2	55840	broad.mit.edu	37	3	121575996	121575996	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:121575996C>A	uc003een.2	+	4	576	c.477C>A	c.(475-477)ATC>ATA	p.I159I	EAF2_uc003eeo.2_Silent_p.I29I	NM_018456	NP_060926	Q96CJ1	EAF2_HUMAN	ELL associated factor 2	159					apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	protein binding				0				GBM - Glioblastoma multiforme(114;0.0972)		TAGATGATATCGAAAGAGGTA	0.279													5	219					0.00116845	0.00135078	0.001168	1	0
TMCC1	23023	broad.mit.edu	37	3	129370592	129370592	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:129370592T>A	uc003emz.3	-	7	2195	c.1694A>T	c.(1693-1695)CAG>CTG	p.Q565L	TMCC1_uc003emy.3_Missense_Mutation_p.Q241L|TMCC1_uc011blc.1_Missense_Mutation_p.Q386L|TMCC1_uc010htg.2_Missense_Mutation_p.Q451L	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	565	Potential.					integral to membrane				skin(1)	1						CTGCTGCTGCTGCAGCTCCAT	0.572													4	385					0	0	0.001984	0	0
MED12L	116931	broad.mit.edu	37	3	151100523	151100523	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:151100523G>T	uc003eyp.2	+	31	4603	c.4565G>T	c.(4564-4566)CGC>CTC	p.R1522L	MED12L_uc011bnz.1_Missense_Mutation_p.R1382L|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.R685L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1522					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTGCAACTCCGCCTAAATTTG	0.388													11	135					4.3838e-07	5.37608e-07	0.001855	1	0
PLD1	5337	broad.mit.edu	37	3	171379930	171379930	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:171379930C>A	uc003fhs.2	-	20	2376	c.2260G>T	c.(2260-2262)GGT>TGT	p.G754C	PLD1_uc003fht.2_Missense_Mutation_p.G716C|PLD1_uc003fhu.3_Missense_Mutation_p.G48C|PLD1_uc003fhv.1_Missense_Mutation_p.G79C	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	754	Catalytic.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	TACTTTATACCAGCAGACCAA	0.418													5	368					2.17888e-05	2.60175e-05	0.006214	1	0
TP63	8626	broad.mit.edu	37	3	189526258	189526258	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:189526258G>A	uc003fry.2	+	4	611	c.522G>A	c.(520-522)CCG>CCA	p.P174P	TP63_uc003frx.2_Silent_p.P174P|TP63_uc003frz.2_Silent_p.P174P|TP63_uc010hzc.1_Silent_p.P174P|TP63_uc003fsa.2_Silent_p.P80P|TP63_uc003fsb.2_Silent_p.P80P|TP63_uc003fsc.2_Silent_p.P80P|TP63_uc003fsd.2_Silent_p.P80P|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Silent_p.P55P	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	174					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACCCAGGCCCGCACAGTTTCG	0.647									Hay-Wells_syndrome	HNSCC(45;0.13)			5	324					0	0	0.000602	0	0
MUC4	4585	broad.mit.edu	37	3	195505855	195505855	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:195505855G>T	uc011bto.1	-	3	12672	c.12212C>A	c.(12211-12213)TCC>TAC	p.S4071Y	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GGATGCTGAGGAAGTGTCGGT	0.597													4	32					1.12685e-05	1.34999e-05	0.004482	1	0
MED28	80306	broad.mit.edu	37	4	17616343	17616343	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:17616343C>A	uc003gpi.1	+	1	78	c.66C>A	c.(64-66)GGC>GGA	p.G22G	MED28_uc003gpj.2_RNA	NM_025205	NP_079481	Q9H204	MED28_HUMAN	mediator complex subunit 28	22					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|membrane|nucleus	actin binding				0						CCCCGCCGGGCCTTCCGGGCC	0.602													16	292					4.35082e-09	5.58073e-09	0.001523	1	0
RBPJ	3516	broad.mit.edu	37	4	26422285	26422285	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:26422285G>A	uc003grx.1	+	6	709	c.473G>A	c.(472-474)AGC>AAC	p.S158N	RBPJ_uc003gry.1_Missense_Mutation_p.S143N|RBPJ_uc003grz.1_Missense_Mutation_p.S158N|RBPJ_uc011bxt.1_Missense_Mutation_p.S158N|RBPJ_uc003gsa.1_Missense_Mutation_p.S144N|RBPJ_uc003gsb.1_Missense_Mutation_p.S145N|RBPJ_uc003gsc.1_Missense_Mutation_p.S144N	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	158					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				GTGTTCCTCAGCAAGCGGATA	0.398													4	253					0	0	0.000602	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351275	40351275	+	Missense_Mutation	SNP	T	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:40351275T>A	uc003gva.1	+	4	758	c.742T>A	c.(742-744)TGC>AGC	p.C248S		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	248	Helical; (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	CCTCATCCCATGCGTCCTCAT	0.527													6	897					0	0	0.008291	0	0
MUC7	4589	broad.mit.edu	37	4	71347185	71347185	+	Missense_Mutation	SNP	T	C	C	rs79807294	by1000genomes	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:71347185T>C	uc011cat.1	+	4	1012	c.724T>C	c.(724-726)TCT>CCT	p.S242P	MUC7_uc011cau.1_Missense_Mutation_p.S242P|MUC7_uc003hfj.2_Missense_Mutation_p.S242P|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	242	Thr-rich.|4.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCCACACCTTCTGCAACTAC	0.592													9	830					0	0	0.004482	0	0
PPP3CA	5530	broad.mit.edu	37	4	101947138	101947138	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:101947138G>A	uc011cen.1	-	14	2125	c.1450C>T	c.(1450-1452)CCG>TCG	p.P484S	PPP3CA_uc003hvu.2_Missense_Mutation_p.P474S|PPP3CA_uc010ilj.2_Missense_Mutation_p.P432S|PPP3CA_uc003hvt.2_Missense_Mutation_p.P461S|PPP3CA_uc003hvs.2_Missense_Mutation_p.P417S|PPP3CA_uc010ilk.2_Missense_Mutation_p.P252S	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	protein phosphatase 3, catalytic subunit, alpha	484	Inhibitory domain.				protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		CTGCGAGGCGGCATCCTCTCA	0.468													5	667					0	0	0.001168	0	0
NEUROG2	63973	broad.mit.edu	37	4	113436127	113436127	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:113436127G>A	uc003ias.2	-	2	832	c.505C>T	c.(505-507)CGC>TGC	p.R169C		NM_024019	NP_076924	Q9H2A3	NGN2_HUMAN	neurogenin 2	169					positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent	nucleus	E-box binding			skin(2)|central_nervous_system(1)	3		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.00168)		TCCGCCAGGCGCAGGGTCTCG	0.557													4	175					0	0	0.000602	0	0
KIAA1109	84162	broad.mit.edu	37	4	123274248	123274248	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:123274248T>C	uc003ieh.2	+	79	14084	c.14039T>C	c.(14038-14040)CTT>CCT	p.L4680P	KIAA1109_uc003iem.2_Missense_Mutation_p.L1036P	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4680					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCTTGGGCCCTTTTTCATTTA	0.373													4	220					0	0	0.001168	0	0
TRIM61	391712	broad.mit.edu	37	4	165890992	165890992	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:165890992A>G	uc003iqw.2	-	3	774	c.163T>C	c.(163-165)TTT>CTT	p.F55L		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	55	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		AAGTGGCAAAAGGGGCAGGGG	0.448													4	469					0	0	0.000248	0	0
ANKRD37	353322	broad.mit.edu	37	4	186318391	186318391	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:186318391G>A	uc003ixm.2	+	2	353	c.115G>A	c.(115-117)GCA>ACA	p.A39T	LRP2BP_uc011ckr.1_5'Flank|ANKRD37_uc011cks.1_Missense_Mutation_p.A39T	NM_181726	NP_859077	Q7Z713	ANR37_HUMAN	ankyrin repeat domain 37	39	ANK 2.					cytoplasm|nucleus					0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;1.27e-25)|Epithelial(43;1.02e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.14e-11)|BRCA - Breast invasive adenocarcinoma(30;7.72e-05)|GBM - Glioblastoma multiforme(59;0.000118)|STAD - Stomach adenocarcinoma(60;0.000756)|LUSC - Lung squamous cell carcinoma(40;0.00902)|COAD - Colon adenocarcinoma(29;0.00939)|READ - Rectum adenocarcinoma(43;0.155)		CCACTTAGCCGCAGGAAGCGG	0.592													4	211					0	0	0.000248	0	0
PRDM9	56979	broad.mit.edu	37	5	23527083	23527083	+	Missense_Mutation	SNP	G	C	C	rs112192848		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:23527083G>C	uc003jgo.2	+	11	2068	c.1886G>C	c.(1885-1887)AGA>ACA	p.R629T		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	629	C2H2-type 5.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACCAGAGGAGACACACAGGG	0.612										HNSCC(3;0.000094)			8	362					0	0	0.006214	0	0
ITGA2	3673	broad.mit.edu	37	5	52363072	52363072	+	Missense_Mutation	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:52363072C>A	uc003joy.2	+	16	2211	c.2068C>A	c.(2068-2070)CAA>AAA	p.Q690K	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.Q614K|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	690	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				ACCTACTAAGCAAAACAATCA	0.358													4	201					0.00198382	0.00226455	0.001984	1	0
CDK7	1022	broad.mit.edu	37	5	68565120	68565120	+	Silent	SNP	G	A	A	rs111845256		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:68565120G>A	uc003jvs.3	+	9	895	c.714G>A	c.(712-714)CCG>CCA	p.P238P	CDK7_uc003jvt.3_Silent_p.P197P|CDK7_uc003jvu.3_Silent_p.P145P	NM_001799	NP_001790	P50613	CDK7_HUMAN	cyclin-dependent kinase 7	238	Protein kinase.				androgen receptor signaling pathway|cell division|cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex|mitochondrion	androgen receptor binding|ATP binding|cyclin-dependent protein kinase activity|DNA-dependent ATPase activity|protein C-terminus binding|RNA polymerase II carboxy-terminal domain kinase activity|transcription coactivator activity			lung(1)	1		Lung NSC(167;7.26e-05)|Prostate(74;0.00634)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.98e-56)|Epithelial(20;3.54e-52)|all cancers(19;9.11e-48)|Lung(70;0.0185)		AACAGTGGCCGGTAAGCCTTT	0.363								NER					4	338					0	0	0.000602	0	0
PCSK1	5122	broad.mit.edu	37	5	95746529	95746529	+	Silent	SNP	G	A	A	rs111426115		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:95746529G>A	uc003kls.1	-	8	1250	c.1044C>T	c.(1042-1044)TCC>TCT	p.S348S	PCSK1_uc010jbi.1_Intron	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	348	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCAGTGTGGAGGAGCACTTCT	0.512													5	854					0	0	0.000602	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7988015	7988015	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:7988015G>A	uc003mxx.3	+	1	1681	c.1246G>A	c.(1246-1248)GCT>ACT	p.A416T	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						TGATGGGGACGCTGTCTCAGT	0.473													4	375					0	0	0.001168	0	0
HLA-E	3133	broad.mit.edu	37	6	30459140	30459140	+	Silent	SNP	G	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:30459140G>C	uc003nqg.2	+	4	875	c.837G>C	c.(835-837)ACG>ACC	p.T279T	HLA-E_uc011dmg.1_RNA|HLA-E_uc011dmh.1_Silent_p.T320T	NM_005516	NP_005507	P13747	HLAE_HUMAN	major histocompatibility complex, class I, E	279	Ig-like C1-type.|Alpha-3.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			central_nervous_system(4)|ovary(1)	5						AGAGATACACGTGCCATGTGC	0.622													4	418					0	0	0.001984	0	0
VARS2	57176	broad.mit.edu	37	6	30892256	30892256	+	Silent	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:30892256C>G	uc003nsc.1	+	25	3224	c.2592C>G	c.(2590-2592)CTC>CTG	p.L864L	VARS2_uc011dmx.1_Silent_p.L864L|VARS2_uc011dmy.1_Silent_p.L724L|VARS2_uc011dmz.1_Silent_p.L894L|VARS2_uc011dna.1_Silent_p.L862L|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Silent_p.L302L|VARS2_uc010jsg.1_Silent_p.L236L|VARS2_uc010jsh.1_Silent_p.L8L	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	864					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						CTGAAGAGCTCTGGCAGAGGC	0.706													6	258					0	0	0.004482	0	0
MDN1	23195	broad.mit.edu	37	6	90459410	90459410	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:90459410G>T	uc003pnn.1	-	25	3583	c.3467C>A	c.(3466-3468)GCC>GAC	p.A1156D		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1156					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		ATCAGTAGGGGCCAAATTTAA	0.388													10	366					0.00244969	0.00278758	0.002450	1	0
THEMIS	387357	broad.mit.edu	37	6	128135053	128135053	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:128135053G>A	uc003qbi.2	-	5	1052	c.733C>T	c.(733-735)CTC>TTC	p.L245F	THEMIS_uc010kfa.2_Missense_Mutation_p.L148F|THEMIS_uc011ebt.1_Missense_Mutation_p.L245F|THEMIS_uc010kfb.2_Missense_Mutation_p.L210F	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	245	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						AGACTGGGGAGGATGCGGATT	0.353													4	434					0	0	0.001168	0	0
LPA	4018	broad.mit.edu	37	6	161026093	161026093	+	Missense_Mutation	SNP	G	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:161026093G>T	uc003qtl.2	-	19	3050	c.2930C>A	c.(2929-2931)GCA>GAA	p.A977E		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3485	Kringle 31.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGGGTAGTATGCTGGGGTCCG	0.438													7	899					1.33834e-09	1.72888e-09	0.007413	1	0
SLC29A4	222962	broad.mit.edu	37	7	5340082	5340082	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:5340082G>A	uc003sod.2	+	10	1400	c.1239G>A	c.(1237-1239)CGG>CGA	p.R413R	SLC29A4_uc003soc.2_Silent_p.R413R|SLC29A4_uc003soe.2_Silent_p.R399R|SLC29A4_uc010ksw.2_Intron	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	413	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		TGGACTGGCGGGGCACCCACC	0.706													5	329					0	0	0.000602	0	0
FAM188B	84182	broad.mit.edu	37	7	30825414	30825414	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:30825414A>G	uc003tbt.2	+	4	546	c.469A>G	c.(469-471)AGG>GGG	p.R157G	FAM188B_uc010kwe.2_Missense_Mutation_p.R128G	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	157											0						ATCATCTAAAAGGCCCCCGCA	0.443													4	459					0	0	0.000248	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130895	75130895	+	Missense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:75130895C>T	uc011kfy.1	+	6	906	c.770C>T	c.(769-771)CCG>CTG	p.P257L		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	257	Arg-rich.										0						TCCATGAACCCGAGGGCCAGG	0.592													5	639					0	0	0.003080	0	0
DPY19L2P2	349152	broad.mit.edu	37	7	102825947	102825947	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:102825947A>G	uc003vbh.3	-	20	3239	c.1048T>C	c.(1048-1050)TGT>CGT	p.C350R	DPY19L2P2_uc003vbg.3_RNA|DPY19L2P2_uc010lit.2_RNA	NR_003561				RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						ACAGCTTGACACTTGCCATTG	0.373													6	294					0	0	0.004482	0	0
SLC26A4	5172	broad.mit.edu	37	7	107329564	107329564	+	Missense_Mutation	SNP	C	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:107329564C>G	uc003vep.2	+	9	1292	c.1068C>G	c.(1066-1068)ATC>ATG	p.I356M	SLC26A4_uc011kmb.1_5'Flank|SLC26A4_uc011kmc.1_5'Flank	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	356	Helical; (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						CATTTTCCATCGCTGTGGTGG	0.453									Pendred_syndrome				4	582					0	0	0.000248	0	0
SLC26A3	1811	broad.mit.edu	37	7	107432329	107432329	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:107432329A>G	uc003ver.2	-	4	539	c.328T>C	c.(328-330)TTT>CTT	p.F110L	SLC26A3_uc003ves.2_Missense_Mutation_p.F75L	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	110	Helical; (Potential).				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						GCTGGGAAAAAGGATGCATAC	0.453													6	348					0	0	0.008291	0	0
TMEM168	64418	broad.mit.edu	37	7	112407785	112407785	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:112407785G>A	uc003vgn.2	-	5	1953	c.1561C>T	c.(1561-1563)CGC>TGC	p.R521C	TMEM168_uc010lju.2_Missense_Mutation_p.R521C|TMEM168_uc011kmr.1_Missense_Mutation_p.R137C	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	521						integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						GTGTCAAGGCGTAGTGTATCT	0.393													4	316					0	0	0.001168	0	0
FOXP2	93986	broad.mit.edu	37	7	114298280	114298280	+	Nonsense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:114298280C>T	uc003vhb.2	+	11	1800	c.1426C>T	c.(1426-1428)CGA>TGA	p.R476*	FOXP2_uc003vgu.2_Intron|FOXP2_uc003vgz.2_Nonsense_Mutation_p.R501*|FOXP2_uc003vha.2_Nonsense_Mutation_p.R384*|FOXP2_uc011kmu.1_Nonsense_Mutation_p.R493*|FOXP2_uc011kmv.1_Nonsense_Mutation_p.R475*|FOXP2_uc010ljz.1_Intron|FOXP2_uc003vhe.1_Nonsense_Mutation_p.R46*	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	476					camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						GGGAGCCATACGAAGGCGACA	0.507													8	329					0	0	0.003080	0	0
GRM8	2918	broad.mit.edu	37	7	126173379	126173379	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:126173379G>A	uc003vlr.2	-	8	2368	c.2057C>T	c.(2056-2058)GCG>GTG	p.A686V	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.A686V|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	686	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GAACTTGGGCGCTGTGACAGA	0.507										HNSCC(24;0.065)			5	369					0	0	0.001168	0	0
MKRN1	23608	broad.mit.edu	37	7	140171766	140171766	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:140171766G>A	uc003vvt.2	-	2	456	c.231C>T	c.(229-231)TAC>TAT	p.Y77Y	MKRN1_uc003vvs.2_Silent_p.Y13Y|MKRN1_uc011krd.1_5'UTR|MKRN1_uc003vvv.3_Silent_p.Y77Y|MKRN1_uc003vvu.3_Silent_p.Y13Y	NM_013446	NP_038474	Q9UHC7	MKRN1_HUMAN	makorin ring finger protein 1 isoform 1	77	C3H1-type 1.						ligase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.00956)					GGTCATGCGAGTAGCGACAGT	0.403													4	322					0	0	0.001168	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146536935	146536935	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:146536935G>A	uc003weu.1	+	3	857	c.341G>A	c.(340-342)CGG>CAG	p.R114Q		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	114	F5/8 type C.|Extracellular (Potential).		R -> Q.		behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ACCCAATACCGGATGCTCTAC	0.468										HNSCC(39;0.1)			4	247					0	0	0.000248	0	0
EZH2	2146	broad.mit.edu	37	7	148512600	148512600	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:148512600T>C	uc003wfd.1	-	13	1695	c.1529A>G	c.(1528-1530)AAG>AGG	p.K510R	EZH2_uc011kug.1_Missense_Mutation_p.K501R|EZH2_uc003wfb.1_Missense_Mutation_p.K515R|EZH2_uc003wfc.1_Missense_Mutation_p.K471R|EZH2_uc011kuh.1_Missense_Mutation_p.K501R	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	510					negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding			haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			ATGCTAACCCTTTTTCAGCTG	0.368			Mis		DLBCL								4	484					0	0	0.001984	0	0
KCNH2	3757	broad.mit.edu	37	7	150645974	150645974	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:150645974G>A	uc003wic.2	-	10	2575	c.2562C>T	c.(2560-2562)TCC>TCT	p.S854S	KCNH2_uc003wib.2_Silent_p.S514S|KCNH2_uc011kux.1_Silent_p.S758S	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	854	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TCTCCAGGCTGGACCAGAAGT	0.537													4	261					0	0	0.000248	0	0
BMP1	649	broad.mit.edu	37	8	22054907	22054907	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:22054907A>G	uc003xbg.2	+	15	2325	c.2081A>G	c.(2080-2082)AAG>AGG	p.K694R	BMP1_uc003xba.2_Missense_Mutation_p.K694R|BMP1_uc003xbb.2_Missense_Mutation_p.K694R|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_Missense_Mutation_p.K443R|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_Missense_Mutation_p.K443R|BMP1_uc011kzc.1_Missense_Mutation_p.K443R|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	694	CUB 3.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		GTGTCCAAAAAGGGCTTCAAG	0.577													6	775					0	0	0.001168	0	0
RNF19A	25897	broad.mit.edu	37	8	101271259	101271259	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:101271259T>C	uc003yjj.1	-	11	2359	c.2042A>G	c.(2041-2043)AAG>AGG	p.K681R	RNF19A_uc003yjk.1_Missense_Mutation_p.K681R	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	681	Interaction with CASR.				microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			CATGTTACCCTTTTTCCTCAG	0.438											OREG0018897	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	613					0	0	0.000248	0	0
LRP12	29967	broad.mit.edu	37	8	105502937	105502937	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:105502937G>A	uc003yma.2	-	7	2639	c.2544C>T	c.(2542-2544)AAC>AAT	p.N848N	LRP12_uc003ymb.2_Silent_p.N829N|LRP12_uc003ylz.2_Silent_p.N254N	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	848	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CACTCGTTTCGTTTTTCAGTG	0.418													10	431					0	0	0.001368	0	0
SYBU	55638	broad.mit.edu	37	8	110590222	110590222	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:110590222G>A	uc003ynj.3	-	6	922	c.759C>T	c.(757-759)TGC>TGT	p.C253C	SYBU_uc003yni.3_Silent_p.C250C|SYBU_uc003ynk.3_Silent_p.C134C|SYBU_uc010mco.2_Silent_p.C252C|SYBU_uc003ynl.3_Silent_p.C252C|SYBU_uc010mcp.2_Silent_p.C253C|SYBU_uc010mcq.2_Silent_p.C253C|SYBU_uc003yno.3_Silent_p.C134C|SYBU_uc010mcr.2_Silent_p.C253C|SYBU_uc003ynm.3_Silent_p.C252C|SYBU_uc003ynn.3_Silent_p.C252C|SYBU_uc010mcs.2_Silent_p.C134C|SYBU_uc010mct.2_Silent_p.C253C|SYBU_uc010mcu.2_Silent_p.C252C|SYBU_uc003ynp.3_Silent_p.C185C|SYBU_uc010mcv.2_Silent_p.C253C|SYBU_uc003ynh.3_Silent_p.C47C|SYBU_uc011lhw.1_Silent_p.C123C	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	253	Sufficient for interaction with KIF5B.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						GATTTTCACCGCAAGACATGT	0.428													6	767					0	0	0.004482	0	0
MTSS1	9788	broad.mit.edu	37	8	125575104	125575104	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:125575104G>A	uc003yrk.2	-	10	1488	c.954C>T	c.(952-954)TCC>TCT	p.S318S	NDUFB9_uc011lim.1_Intron|MTSS1_uc011lin.1_Silent_p.S52S|MTSS1_uc011lio.1_Silent_p.S208S|MTSS1_uc003yri.2_Silent_p.S118S|MTSS1_uc003yrj.2_Silent_p.S318S|MTSS1_uc003yrl.2_Silent_p.S322S	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	318	Ser-rich.				actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			AGTCATGGGAGGACACGCTGG	0.637													5	230					0	0	0.001168	0	0
PLEC	5339	broad.mit.edu	37	8	145006714	145006714	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:145006714G>A	uc003zaf.1	-	16	2412	c.2242C>T	c.(2242-2244)CGC>TGC	p.R748C	PLEC_uc003zab.1_Missense_Mutation_p.R611C|PLEC_uc003zac.1_Missense_Mutation_p.R615C|PLEC_uc003zad.2_Missense_Mutation_p.R611C|PLEC_uc003zae.1_Missense_Mutation_p.R579C|PLEC_uc003zag.1_Missense_Mutation_p.R589C|PLEC_uc003zah.2_Missense_Mutation_p.R597C|PLEC_uc003zaj.2_Missense_Mutation_p.R638C	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	748	Spectrin 2.|Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GACCTGAGGCGGGCCTTGGAG	0.657													7	444					0	0	0.004482	0	0
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:20414379G>A	uc003zoe.2	-	5	724	c.465C>T	c.(463-465)AGC>AGT	p.S155S	MLLT3_uc011lne.1_Silent_p.S123S|MLLT3_uc011lnf.1_Silent_p.S152S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Silent_p.S123S	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	155	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.149			T	MLL	ALL								5	107					0	0	0.001984	0	0
KLHL9	55958	broad.mit.edu	37	9	21333273	21333273	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:21333273G>A	uc003zoy.2	-	1	2157	c.1586C>T	c.(1585-1587)GCC>GTC	p.A529V	KLHL9_uc003zow.2_Intron|KLHL9_uc003zox.2_RNA	NM_018847	NP_061335	Q9P2J3	KLHL9_HUMAN	kelch-like 9	529	Kelch 5.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|midbody				ovary(3)|skin(1)	4				Lung(24;8.52e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.118)		TAACATGGCGGCAATTGGGGT	0.403													5	717					0	0	0.000602	0	0
RUSC2	9853	broad.mit.edu	37	9	35548533	35548533	+	Splice_Site	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:35548533G>A	uc003zww.2	+	2	2269	c.2014_splice	c.e2+1	p.G672_splice	RUSC2_uc010mkq.2_Intron|RUSC2_uc003zwx.3_Splice_Site_p.G672_splice	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2							cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			AGAGCTGACGGTAAGGAGCCT	0.597													4	161					0	0	0.000248	0	0
KGFLP2	654466	broad.mit.edu	37	9	41962661	41962661	+	RNA	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:41962661G>A	uc004aca.3	-	3		c.848C>T				NR_003670				Homo sapiens cDNA FLJ76381 complete cds.												0						TTTCCCCTCCGTTGTTTGTCC	0.358													17	114					0	0	0.007413	0	0
APBA1	320	broad.mit.edu	37	9	72071305	72071305	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:72071305G>A	uc004ahh.2	-	8	1922	c.1646C>T	c.(1645-1647)GCG>GTG	p.A549V		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	549	PID.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						CCCAATGTCCGCAATGTAGGA	0.567													6	849					0	0	0.000602	0	0
KIAA1529	57653	broad.mit.edu	37	9	100053719	100053719	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:100053719C>A	uc011lut.1	+	10	809	c.36C>A	c.(34-36)ACC>ACA	p.T12T	KIAA1529_uc011lur.1_RNA|KIAA1529_uc004axe.1_Silent_p.T12T|KIAA1529_uc011lus.1_5'UTR|KIAA1529_uc011luu.1_Missense_Mutation_p.P157H|KIAA1529_uc010msm.1_RNA	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				CTGGTGCTACCCATCGTCCAA	0.537													14	662					0.000422831	0.00049353	0.004007	1	0
TBC1D2	55357	broad.mit.edu	37	9	100971103	100971103	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:100971103G>A	uc011lvb.1	-	9	2177	c.1997C>T	c.(1996-1998)GCT>GTT	p.A666V	TBC1D2_uc004ayp.2_Missense_Mutation_p.A206V|TBC1D2_uc004ayq.2_Missense_Mutation_p.A666V|TBC1D2_uc004ayr.2_Missense_Mutation_p.A448V|TBC1D2_uc004ayo.3_Missense_Mutation_p.A666V	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	666	Rab-GAP TBC.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		CTGGCGGGCAGCAGGGTGCTC	0.662													4	286					0	0	0.000602	0	0
OR13C4	138804	broad.mit.edu	37	9	107288857	107288857	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:107288857G>A	uc011lvn.1	-	1	634	c.634C>T	c.(634-636)CTC>TTC	p.L212F		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAAATCACGAGCAGAGGAAGA	0.413													6	494					0	0	0.001168	0	0
PTGS1	5742	broad.mit.edu	37	9	125148756	125148756	+	Silent	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:125148756C>T	uc004bmg.1	+	9	1176	c.1041C>T	c.(1039-1041)TAC>TAT	p.Y347Y	PTGS1_uc011lys.1_Silent_p.Y322Y|PTGS1_uc010mwb.1_Silent_p.Y238Y|PTGS1_uc004bmf.1_Silent_p.Y347Y|PTGS1_uc004bmh.1_Silent_p.Y238Y|PTGS1_uc011lyt.1_Silent_p.Y238Y	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	347					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	TCGAGGAGTACGTGCAGCAGC	0.527													17	779					0	0	0.004990	0	0
OR1L1	26737	broad.mit.edu	37	9	125424267	125424267	+	Silent	SNP	C	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:125424267C>A	uc011lza.1	+	1	423	c.423C>A	c.(421-423)ACC>ACA	p.T141T		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	141	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						AGACAAAGACCATCTCTTACA	0.433													8	752					5.18039e-06	6.28924e-06	0.003080	1	0
SPTAN1	6709	broad.mit.edu	37	9	131375727	131375727	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:131375727A>G	uc004bvl.3	+	39	5209	c.5096A>G	c.(5095-5097)AAG>AGG	p.K1699R	SPTAN1_uc004bvm.3_Missense_Mutation_p.K1704R|SPTAN1_uc004bvn.3_Missense_Mutation_p.K1679R	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	1699	Spectrin 18.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CTGCTGAAAAAGCATCAACTG	0.527													4	320					0	0	0.001168	0	0
KDM6A	7403	broad.mit.edu	37	X	44879925	44879925	+	Nonsense_Mutation	SNP	C	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:44879925C>T	uc004dge.3	+	6	889	c.514C>T	c.(514-516)CGA>TGA	p.R172*	KDM6A_uc010nhk.2_Nonsense_Mutation_p.R172*|KDM6A_uc011mkz.1_Nonsense_Mutation_p.R172*|KDM6A_uc011mla.1_Nonsense_Mutation_p.R172*|KDM6A_uc011mlb.1_Nonsense_Mutation_p.R172*|KDM6A_uc011mlc.1_Intron	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	172	TPR 3.				histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.0(4)|p.?(1)|p.R172*(1)		kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						AATTCATTTACGACTTGGGCT	0.343			D|N|F|S		renal|oesophageal SCC|MM								6	627					0	0	0.001168	0	0
OPHN1	4983	broad.mit.edu	37	X	67454408	67454408	+	Missense_Mutation	SNP	T	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:67454408T>C	uc004dww.3	-	6	701	c.407A>G	c.(406-408)AAG>AGG	p.K136R	OPHN1_uc011mpg.1_Missense_Mutation_p.K136R|OPHN1_uc004dwx.2_Missense_Mutation_p.K136R	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	136					axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						CTCACCATCCTTTTCAAATTT	0.398													4	307					0	0	0.000602	0	0
DOCK11	139818	broad.mit.edu	37	X	117814641	117814641	+	Missense_Mutation	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:117814641G>A	uc004eqp.2	+	49	5720	c.5657G>A	c.(5656-5658)CGT>CAT	p.R1886H	DOCK11_uc004eqq.2_Missense_Mutation_p.R1665H	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1886	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						TGCAAACGCCGTACAATCTTG	0.378													5	536					0	0	0.001984	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125686253	125686253	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:125686253G>A	uc004eul.2	-	1	590	c.339C>T	c.(337-339)TGC>TGT	p.C113C		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	113										skin(3)|ovary(1)	4						ACTTGGTGCCGCACACCACCT	0.637													5	371					0	0	0.000602	0	0
SAGE1	55511	broad.mit.edu	37	X	134990767	134990767	+	Missense_Mutation	SNP	A	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:134990767A>G	uc004ezh.2	+	12	1599	c.1432A>G	c.(1432-1434)AGG>GGG	p.R478G	SAGE1_uc010nry.1_Missense_Mutation_p.R447G|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	478										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AATGAGTTCCAGGGATCTGTG	0.393													6	718					0	0	0.001168	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935609	151935609	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:151935609G>A	uc004fgp.2	-	3	767	c.558C>T	c.(556-558)TAC>TAT	p.Y186Y		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	186	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GCAGGCCATCGTAGGAGAGGC	0.572													21	750					0	0	0.002780	0	0
HCFC1	3054	broad.mit.edu	37	X	153224824	153224824	+	Silent	SNP	G	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:153224824G>A	uc004fjp.2	-	9	2091	c.1563C>T	c.(1561-1563)GCC>GCT	p.A521A		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	521					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TCCGCACTCCGGCGGGAAGGG	0.602													7	682					0	0	0.006214	0	0
KLHL17	339451	broad.mit.edu	37	1	899314	899315	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:899314_899315insC	uc001aca.1	+	9	1477_1478	c.1370_1371insC	c.(1369-1371)GACfs	p.D457fs	KLHL17_uc001acc.1_RNA|PLEKHN1_uc001acd.2_5'Flank|PLEKHN1_uc001acf.2_5'Flank|PLEKHN1_uc001ace.2_5'Flank	NM_198317	NP_938073	Q6TDP4	KLH17_HUMAN	kelch-like 17	457	Interaction with F-actin (By similarity).|Kelch 3.				actin cytoskeleton organization	actin cytoskeleton|cell junction|postsynaptic density|postsynaptic membrane	protein complex scaffold				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.52e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.59e-23)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000469)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GAACGCTACGACCCCCTGACCG	0.688													7	1090	---	---	---	---					
CAMTA1	23261	broad.mit.edu	37	1	7811329	7811329	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:7811329delA	uc001aoi.2	+	20	4967	c.4760delA	c.(4759-4761)CAAfs	p.Q1587fs	CAMTA1_uc001aok.3_Frame_Shift_Del_p.Q630fs|CAMTA1_uc001aoj.2_Frame_Shift_Del_p.Q550fs|CAMTA1_uc009vmf.2_Frame_Shift_Del_p.Q177fs	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	1587	IQ 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		TACTATGAACAAAAAAAATTC	0.473													17	1142	---	---	---	---					
TNFRSF9	3604	broad.mit.edu	37	1	7980912	7980914	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:7980912_7980914delCTT	uc001aot.2	-	8	877_879	c.749_751delAAG	c.(748-753)GAAGGA>GGA	p.E250del		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	250	Cytoplasmic (Potential).|Interaction with LRR-1.		E -> G (in a colorectal cancer sample; somatic mutation).		induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity	p.E250G(1)		large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		TCACATCCTCCTTCTTCTTCTTC	0.379													8	581	---	---	---	---					
SLC2A5	6518	broad.mit.edu	37	1	9098944	9098946	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:9098944_9098946delCAG	uc001apo.2	-	9	1331_1333	c.1039_1041delCTG	c.(1039-1041)CTGdel	p.L347del	SLC2A5_uc010nzy.1_In_Frame_Del_p.L288del|SLC2A5_uc010nzz.1_In_Frame_Del_p.L232del|SLC2A5_uc010oaa.1_In_Frame_Del_p.L303del|SLC2A5_uc010oab.1_In_Frame_Del_p.L347del	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	347	Helical; Name=9; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TGGAGAAGCCCAGCAGCAGCAGC	0.675													10	182	---	---	---	---					
SPEN	23013	broad.mit.edu	37	1	16262465	16262466	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:16262465_16262466insC	uc001axk.1	+	11	9934_9935	c.9730_9731insC	c.(9730-9732)ACCfs	p.T3244fs	SPEN_uc010obp.1_Frame_Shift_Ins_p.T3203fs	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	3244	Pro-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AGCTgcccccacccccacccct	0.416													8	250	---	---	---	---					
MST1P2	11209	broad.mit.edu	37	1	16975913	16975918	+	RNA	DEL	CCTGTT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:16975913_16975918delCCTGTT	uc010och.1	+	11		c.1935_1940delCCTGTT			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GGTTGGGCACCCTGTTCCAGAACCCA	0.578													8	219	---	---	---	---					
LYPLA2	11313	broad.mit.edu	37	1	24119502	24119502	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:24119502delT	uc001bht.2	+	3	204	c.83delT	c.(82-84)ATTfs	p.I28fs	LYPLA2_uc001bhr.2_Frame_Shift_Del_p.I23fs|LYPLA2_uc001bhs.1_Frame_Shift_Del_p.I23fs|LYPLA2_uc001bhu.2_Intron	NM_007260	NP_009191	O95372	LYPA2_HUMAN	lysophospholipase II	28					fatty acid metabolic process	cytoplasm	hydrolase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;1.79e-24)|Colorectal(126;4.8e-08)|COAD - Colon adenocarcinoma(152;2.83e-06)|GBM - Glioblastoma multiforme(114;4.22e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0827)|LUSC - Lung squamous cell carcinoma(448;0.184)		TTCCAGGTTATTTTTTTACAT	0.582													8	981	---	---	---	---					
EXTL1	2134	broad.mit.edu	37	1	26349533	26349535	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:26349533_26349535delCCT	uc001blf.2	+	1	1263_1265	c.396_398delCCT	c.(394-399)TGCCTC>TGC	p.L137del		NM_004455	NP_004446	Q92935	EXTL1_HUMAN	exostoses-like 1	137	Lumenal (Potential).				skeletal system development	integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|protein binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00594)|READ - Rectum adenocarcinoma(331;0.0649)		CTGGGGCCTGCCTCCTCCTCCTC	0.606													8	358	---	---	---	---					
CNKSR1	10256	broad.mit.edu	37	1	26514778	26514778	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:26514778delC	uc001bln.3	+	17	1587	c.1529delC	c.(1528-1530)GCCfs	p.A510fs	CNKSR1_uc001blm.3_Frame_Shift_Del_p.A503fs|CNKSR1_uc009vsd.2_Frame_Shift_Del_p.A245fs|CNKSR1_uc009vse.2_Frame_Shift_Del_p.A245fs|CNKSR1_uc001blo.2_Frame_Shift_Del_p.A245fs|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	510					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGGCCGGGCCCCCCCACCC	0.527													8	471	---	---	---	---					
MAP7D1	55700	broad.mit.edu	37	1	36636625	36636626	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:36636625_36636626insC	uc001bzz.2	+	2	316_317	c.100_101insC	c.(100-102)TCCfs	p.S34fs	MAP7D1_uc001caa.2_Frame_Shift_Ins_p.S34fs|MAP7D1_uc001cab.2_Frame_Shift_Ins_p.S34fs|MAP7D1_uc001cac.2_5'Flank	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	34	Pro-rich.					cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				AGGTGACCCTTCCCCCCCACCA	0.594													9	611	---	---	---	---					
ZMPSTE24	10269	broad.mit.edu	37	1	40756542	40756543	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:40756542_40756543insT	uc001cfg.2	+	9	1287_1288	c.1076_1077insT	c.(1075-1077)TGTfs	p.C359fs		NM_005857	NP_005848	O75844	FACE1_HUMAN	zinc metallopeptidase STE24	359	Helical; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane	metal ion binding|metalloexopeptidase activity				0	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			TCTTTCCTGTGTTTTTTTTTAT	0.332													10	327	---	---	---	---					
KIAA0467	23334	broad.mit.edu	37	1	43909340	43909340	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:43909340delC	uc001cjk.1	+	47	6463	c.6001delC	c.(6001-6003)CCCfs	p.P2001fs	KIAA0467_uc001cjl.1_5'Flank	NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2900						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGATGTGTCGCCCCCGGGAGC	0.577													7	816	---	---	---	---					
PTPRF	5792	broad.mit.edu	37	1	44071946	44071948	+	In_Frame_Del	DEL	GCG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:44071946_44071948delGCG	uc001cjr.2	+	20	3859_3861	c.3519_3521delGCG	c.(3517-3522)CAGCGG>CAG	p.R1178del	PTPRF_uc001cjs.2_In_Frame_Del_p.R1169del|PTPRF_uc001cju.2_In_Frame_Del_p.R556del|PTPRF_uc009vwt.2_In_Frame_Del_p.R738del|PTPRF_uc001cjv.2_In_Frame_Del_p.R638del|PTPRF_uc001cjw.2_In_Frame_Del_p.R404del	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1178	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GAGAGGAGCAGCGGCGGCGGCGG	0.631													12	563	---	---	---	---					
IPP	3652	broad.mit.edu	37	1	46184897	46184898	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:46184897_46184898delAC	uc001cou.2	-	6	1430_1431	c.1163_1164delGT	c.(1162-1164)TGTfs	p.C388fs	IPP_uc001cos.3_Frame_Shift_Del_p.C388fs	NM_005897	NP_005888	Q9Y573	IPP_HUMAN	intracisternal A particle-promoted polypeptide	388	Kelch 2.					actin cytoskeleton|cytoplasm	actin binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TAGCCCCATAACACACACACAC	0.317													17	431	---	---	---	---					
LRRC41	10489	broad.mit.edu	37	1	46752129	46752129	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:46752129delA	uc001cpn.2	-	4	444	c.400delT	c.(400-402)TCCfs	p.S134fs	LRRC41_uc010omb.1_Frame_Shift_Del_p.S134fs|LRRC41_uc001cpo.1_Frame_Shift_Del_p.S134fs	NM_006369	NP_006360	Q15345	LRC41_HUMAN	MUF1 protein	134										ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(166;0.155)					AGAACATGGGAAAAAAAGGCC	0.483													8	371	---	---	---	---					
TMEM48	55706	broad.mit.edu	37	1	54298190	54298192	+	In_Frame_Del	DEL	TTA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:54298190_54298192delTTA	uc001cvs.2	-	3	492_494	c.251_253delTAA	c.(250-255)ATAAGT>AGT	p.I84del	TMEM48_uc010onu.1_In_Frame_Del_p.I84del|TMEM48_uc001cvt.2_5'UTR|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_5'UTR	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	84	Helical; Name=2; (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TTGAAAATACTTATTATTATTAT	0.305													9	279	---	---	---	---					
ZNF326	284695	broad.mit.edu	37	1	90470782	90470784	+	In_Frame_Del	DEL	GTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:90470782_90470784delGTG	uc001dnq.2	+	4	327_329	c.188_190delGTG	c.(187-192)AGTGGT>AGT	p.G68del	ZNF326_uc001dnp.3_In_Frame_Del_p.G68del|ZNF326_uc009wda.1_In_Frame_Del_p.G68del|ZNF326_uc001dnr.2_Intron	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1	68	Mediates transcriptional activation (By similarity).|Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		GACAATCACAGTGGTGGTGGTGG	0.409													9	595	---	---	---	---					
AGL	178	broad.mit.edu	37	1	100378028	100378028	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:100378028delA	uc001dsi.1	+	29	4304	c.3904delA	c.(3904-3906)AAAfs	p.K1302fs	AGL_uc001dsj.1_Frame_Shift_Del_p.K1302fs|AGL_uc001dsk.1_Frame_Shift_Del_p.K1302fs|AGL_uc001dsl.1_Frame_Shift_Del_p.K1302fs|AGL_uc001dsm.1_Frame_Shift_Del_p.K1286fs|AGL_uc001dsn.1_Frame_Shift_Del_p.K1285fs	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1302	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GGAATTATCCAAAAAAAATAT	0.323													7	368	---	---	---	---					
FNDC7	163479	broad.mit.edu	37	1	109276138	109276138	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:109276138delA	uc001dvx.2	+	10	2124	c.2124delA	c.(2122-2124)CCAfs	p.P708fs	FNDC7_uc010ova.1_Frame_Shift_Del_p.P475fs	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	709	Fibronectin type-III 8.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		CTTTCTGTCCAAAAAAAATAT	0.363													12	409	---	---	---	---					
SV2A	9900	broad.mit.edu	37	1	149884988	149884989	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:149884988_149884989insC	uc001etg.2	-	2	895_896	c.404_405insG	c.(403-405)GGCfs	p.G135fs	SV2A_uc001eth.2_Frame_Shift_Ins_p.G135fs	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	135	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	CCTCCCCCCGGCCCCCAGGGGG	0.663													8	512	---	---	---	---					
TCHH	7062	broad.mit.edu	37	1	152083818	152083820	+	In_Frame_Del	DEL	CGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:152083818_152083820delCGG	uc001ezp.2	-	2	1873_1875	c.1873_1875delCCG	c.(1873-1875)CCGdel	p.P625del	TCHH_uc009wne.1_In_Frame_Del_p.P625del	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	625	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCTTCCTCCGGCTCCTCGCGC	0.680													11	474	---	---	---	---					
KPRP	448834	broad.mit.edu	37	1	152732678	152732678	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:152732678delC	uc001fal.1	+	2	672	c.614delC	c.(613-615)ACCfs	p.T205fs		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	205	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACAACTACACCCCCCAGTTC	0.572													7	1017	---	---	---	---					
GON4L	54856	broad.mit.edu	37	1	155823172	155823172	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:155823172delT	uc001flz.2	-	2	497	c.400delA	c.(400-402)ATGfs	p.M134fs	GON4L_uc001fly.1_Frame_Shift_Del_p.M134fs|GON4L_uc009wrh.1_Frame_Shift_Del_p.M134fs|GON4L_uc001fma.1_Frame_Shift_Del_p.M134fs|GON4L_uc001fmc.2_Frame_Shift_Del_p.M134fs|GON4L_uc001fmd.3_Frame_Shift_Del_p.M134fs|GON4L_uc009wri.2_Translation_Start_Site	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	134					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CTGAGTGTCATTTTTTTCCCT	0.458													8	620	---	---	---	---					
KIAA0907	22889	broad.mit.edu	37	1	155886422	155886423	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:155886422_155886423delCT	uc001fmi.1	-	12	1570_1571	c.1546_1547delAG	c.(1546-1548)AGGfs	p.R516fs	KIAA0907_uc001fmj.1_Frame_Shift_Del_p.R516fs|KIAA0907_uc009wrk.1_Frame_Shift_Del_p.R373fs|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	516											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TTACCTGTCCCTCTCTCTCTCT	0.396													35	924	---	---	---	---					
CCT3	7203	broad.mit.edu	37	1	156290648	156290648	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:156290648delT	uc001fol.1	-	7	811	c.591delA	c.(589-591)AAAfs	p.K197fs	CCT3_uc001fom.1_Frame_Shift_Del_p.K196fs|CCT3_uc001fon.1_Frame_Shift_Del_p.K159fs|CCT3_uc010phj.1_Frame_Shift_Del_p.K151fs|CCT3_uc010phk.1_Frame_Shift_Del_p.K151fs|CCT3_uc010phl.1_Frame_Shift_Del_p.K151fs	NM_005998	NP_005989	P49368	TCPG_HUMAN	chaperonin containing TCP1, subunit 3 isoform a	197					'de novo' posttranslational protein folding	cytoskeleton|cytosol|plasma membrane	ATP binding|unfolded protein binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					CTCTTGCATATTTTTTTATGT	0.393													9	942	---	---	---	---					
PCP4L1	654790	broad.mit.edu	37	1	161254154	161254156	+	In_Frame_Del	DEL	GGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:161254154_161254156delGGA	uc001gad.2	+	3	338_340	c.90_92delGGA	c.(88-93)GCGGAG>GCG	p.E35del		NM_001102566	NP_001096036	A6NKN8	PC4L1_HUMAN	Purkinje cell protein 4 like 1	35											0	all_cancers(52;4.16e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TCAAGAAGGCGGAGGAGGAGGAG	0.488													11	536	---	---	---	---					
LMX1A	4009	broad.mit.edu	37	1	165177332	165177334	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:165177332_165177334delTGC	uc001gcy.1	-	6	1004_1006	c.783_785delGCA	c.(781-786)CAGCAA>CAA	p.261_262QQ>Q	LMX1A_uc001gcz.1_In_Frame_Del_p.261_262QQ>Q|LMX1A_uc001gcw.1_5'UTR|LMX1A_uc001gcx.1_In_Frame_Del_p.12_13QQ>Q	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	261_262	Poly-Gln.|Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CTGCTGATCTTGCTGCTGCTGCT	0.567													9	217	---	---	---	---					
RYR2	6262	broad.mit.edu	37	1	237969494	237969494	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr1:237969494delT	uc001hyl.1	+	99	14329	c.14209delT	c.(14209-14211)TTTfs	p.F4737fs	RYR2_uc010pyb.1_Frame_Shift_Del_p.F170fs	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4737	Helical; Name=M7; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTATAACAACTTTTTTTTTGC	0.403													7	160	---	---	---	---					
STAM	8027	broad.mit.edu	37	10	17756616	17756618	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:17756616_17756618delCTG	uc001ipj.1	+	14	1676_1678	c.1460_1462delCTG	c.(1459-1464)ACTGCT>ACT	p.A491del	STAM_uc009xjw.1_In_Frame_Del_p.A149del	NM_003473	NP_003464	Q92783	STAM1_HUMAN	signal transducing adaptor molecule 1	491					cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	SH3/SH2 adaptor activity			large_intestine(1)|ovary(1)	2						CCTGCCGCTACTGCTGCTGCTGC	0.493													8	618	---	---	---	---					
C10orf68	79741	broad.mit.edu	37	10	33018277	33018277	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:33018277delA	uc001iwn.3	+	10	1191	c.718delA	c.(718-720)AAAfs	p.K240fs	C10orf68_uc001iwl.1_Frame_Shift_Del_p.K248fs|C10orf68_uc001iwm.1_Frame_Shift_Del_p.K216fs|C10orf68_uc010qei.1_Frame_Shift_Del_p.K152fs|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	240										skin(2)|ovary(1)	3						TTTAGAAATCAAAAAAAAGGA	0.323													8	322	---	---	---	---					
PARD3	56288	broad.mit.edu	37	10	34620059	34620061	+	In_Frame_Del	DEL	TCA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:34620059_34620061delTCA	uc010qej.1	-	19	2826_2828	c.2826_2828delTGA	c.(2824-2829)GATGAA>GAA	p.D942del	PARD3_uc010qek.1_In_Frame_Del_p.D939del|PARD3_uc010qel.1_In_Frame_Del_p.D942del|PARD3_uc010qem.1_In_Frame_Del_p.D926del|PARD3_uc010qen.1_In_Frame_Del_p.D896del|PARD3_uc010qeo.1_In_Frame_Del_p.D896del|PARD3_uc010qep.1_In_Frame_Del_p.D852del|PARD3_uc010qeq.1_In_Frame_Del_p.D867del|PARD3_uc001ixo.1_In_Frame_Del_p.D655del|PARD3_uc001ixp.1_In_Frame_Del_p.D773del|PARD3_uc001ixq.1_In_Frame_Del_p.D896del|PARD3_uc001ixr.1_In_Frame_Del_p.D939del|PARD3_uc001ixt.1_In_Frame_Del_p.D760del|PARD3_uc001ixu.1_In_Frame_Del_p.D884del|PARD3_uc001ixs.1_In_Frame_Del_p.D565del	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	942					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CTCCATGCCTTCATCATCATCAT	0.345													9	441	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	51821328	51821328	+	RNA	DEL	G	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:51821328delG	uc001jiz.1	-	2		c.1307delC								Homo sapiens cDNA FLJ31813 fis, clone NT2RI2009517.																		CGGTCAGCTTGGGGGGTGCGA	0.517													8	874	---	---	---	---					
A1CF	29974	broad.mit.edu	37	10	52569667	52569669	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:52569667_52569669delAGC	uc001jjj.2	-	12	1806_1808	c.1618_1620delGCT	c.(1618-1620)GCTdel	p.A540del	A1CF_uc010qhn.1_In_Frame_Del_p.A540del|A1CF_uc001jji.2_In_Frame_Del_p.A532del|A1CF_uc001jjh.2_In_Frame_Del_p.A540del|A1CF_uc010qho.1_In_Frame_Del_p.A548del|A1CF_uc009xov.2_In_Frame_Del_p.A532del	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	540					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GGAAagcagtagcagcagcagca	0.433													10	453	---	---	---	---					
ANK3	288	broad.mit.edu	37	10	61828745	61828747	+	In_Frame_Del	DEL	GTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:61828745_61828747delGTG	uc001jky.2	-	37	12084_12086	c.11892_11894delCAC	c.(11890-11895)ACCACT>ACT	p.3964_3965TT>T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3964_3965	Thr-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ggtggtggcagtggtggtggtgg	0.320													7	483	---	---	---	---					
JMJD1C	221037	broad.mit.edu	37	10	64952699	64952699	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:64952699delT	uc001jmn.2	-	16	6375	c.6075delA	c.(6073-6075)AAAfs	p.K2025fs	JMJD1C_uc001jml.2_Frame_Shift_Del_p.K1788fs|JMJD1C_uc001jmm.2_Frame_Shift_Del_p.K1737fs|JMJD1C_uc010qiq.1_Frame_Shift_Del_p.K1843fs|JMJD1C_uc009xpi.2_Frame_Shift_Del_p.K1843fs|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmo.2_5'Flank|JMJD1C_uc009xpk.1_Frame_Shift_Del_p.K923fs	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	2025					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TATGTTTACCTTTTTTTTCCT	0.373													7	473	---	---	---	---					
CCAR1	55749	broad.mit.edu	37	10	70509285	70509286	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:70509285_70509286delGA	uc001joo.2	+	10	1080_1081	c.961_962delGA	c.(961-963)GAGfs	p.E321fs	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_Frame_Shift_Del_p.E126fs|CCAR1_uc009xpx.1_Frame_Shift_Del_p.E295fs|CCAR1_uc001jon.1_Frame_Shift_Del_p.E267fs|CCAR1_uc010qiz.1_Frame_Shift_Del_p.E306fs|CCAR1_uc010qja.1_Frame_Shift_Del_p.E306fs|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	321	Arg-rich.				apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						TTTCAGTCGTGAGAGAGAGAGA	0.391													11	207	---	---	---	---					
PRF1	5551	broad.mit.edu	37	10	72358622	72358624	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:72358622_72358624delCTT	uc009xqg.2	-	3	1014_1016	c.853_855delAAG	c.(853-855)AAGdel	p.K285del	PRF1_uc001jrf.3_In_Frame_Del_p.K285del	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	285	MACPF.		Missing (in FHL2).		apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TCATCTTGTGCTTCTTCTTCTTC	0.591			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				8	451	---	---	---	---					
ZMIZ1	57178	broad.mit.edu	37	10	81070787	81070789	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:81070787_81070789delCTC	uc001kaf.2	+	24	3514_3516	c.2942_2944delCTC	c.(2941-2946)GCTCCT>GCT	p.P986del	ZMIZ1_uc001kag.2_In_Frame_Del_p.P862del|ZMIZ1_uc010qlq.1_Intron	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	986	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CACAGTGGGGCTCCTCCTCCTCC	0.635													16	848	---	---	---	---					
TM9SF3	56889	broad.mit.edu	37	10	98336475	98336475	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:98336475delT	uc001kmm.3	-	2	431	c.214delA	c.(214-216)AGTfs	p.S72fs	TM9SF3_uc010qot.1_Frame_Shift_Del_p.S72fs	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	72						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		TGACTGATACTTTTTTTTGAC	0.363													12	665	---	---	---	---					
ABCC2	1244	broad.mit.edu	37	10	101559000	101559000	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:101559000delA	uc001kqf.2	+	8	1043	c.904delA	c.(904-906)AAAfs	p.K302fs		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	302	Cytoplasmic (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GTCTGGGACCAAAAAAGATGT	0.403													12	817	---	---	---	---					
POLL	27343	broad.mit.edu	37	10	103345131	103345133	+	In_Frame_Del	DEL	GGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:103345131_103345133delGGA	uc001ktg.1	-	3	1279_1281	c.513_515delTCC	c.(511-516)CCTCCC>CCC	p.171_172PP>P	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_5'Flank|POLL_uc001kte.1_5'Flank|POLL_uc001kth.1_Intron|POLL_uc001kti.1_In_Frame_Del_p.171_172PP>P|POLL_uc001ktj.1_In_Frame_Del_p.171_172PP>P|POLL_uc001ktf.2_In_Frame_Del_p.171_172PP>P|POLL_uc001ktk.1_Intron|POLL_uc010qqa.1_Intron|POLL_uc010qqb.1_Intron|POLL_uc001ktm.2_In_Frame_Del_p.171_172PP>P|POLL_uc001ktl.2_In_Frame_Del_p.83_84PP>P|POLL_uc010qqc.1_Intron|POLL_uc010qqd.1_Intron|DPCD_uc001ktn.2_5'Flank	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	171_172					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		AGGCCTGGTGGGAGGAGGAGGAG	0.591								DNA_polymerases_(catalytic_subunits)					11	461	---	---	---	---					
SLK	9748	broad.mit.edu	37	10	105727547	105727549	+	In_Frame_Del	DEL	AGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:105727547_105727549delAGA	uc001kxo.1	+	1	78_80	c.44_46delAGA	c.(43-48)GAGAAG>GAG	p.K19del	SLK_uc001kxp.1_In_Frame_Del_p.K19del	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	19	Poly-Lys.				apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TTGGGGAGCGAGAAGAAGAAGAA	0.448													7	544	---	---	---	---					
CPXM2	119587	broad.mit.edu	37	10	125528165	125528167	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr10:125528165_125528167delCAG	uc001lhk.1	-	9	1499_1501	c.1174_1176delCTG	c.(1174-1176)CTGdel	p.L392del	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	392	Poly-Leu.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CGAACTGCACCAGCAGCAGCAGC	0.626													15	1057	---	---	---	---					
APBB1	322	broad.mit.edu	37	11	6432090	6432092	+	In_Frame_Del	DEL	TCC	-	-	rs145320037		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:6432090_6432092delTCC	uc001mdb.1	-	2	586_588	c.486_488delGGA	c.(484-489)GAGGAT>GAT	p.E162del	APBB1_uc001mdc.1_In_Frame_Del_p.E162del|APBB1_uc010rah.1_Intron	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	162	Glu-rich.				apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding	p.E162K(1)		breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		atcatcatcatcctcctcctcct	0.404													14	154	---	---	---	---					
RRP8	23378	broad.mit.edu	37	11	6623336	6623338	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:6623336_6623338delTCC	uc001med.2	-	2	286_288	c.207_209delGGA	c.(205-210)GAGGAA>GAA	p.69_70EE>E	ILK_uc001mee.2_5'Flank|ILK_uc001mef.2_5'Flank|ILK_uc010rap.1_5'Flank|ILK_uc010raq.1_5'Flank|ILK_uc001meg.2_5'Flank|ILK_uc001meh.2_5'Flank	NM_015324	NP_056139	O43159	RRP8_HUMAN	ribosomal RNA processing 8, methyltransferase,	69_70	Poly-Glu.				chromatin modification|chromatin silencing at rDNA|rRNA processing|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	methylated histone residue binding|S-adenosylmethionine-dependent methyltransferase activity				0						CTTCTTCCTTTCCTCCTCCTCCT	0.532													11	332	---	---	---	---					
OR10A5	144124	broad.mit.edu	37	11	6867223	6867225	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:6867223_6867225delTTC	uc001met.1	+	1	310_312	c.310_312delTTC	c.(310-312)TTCdel	p.F108del		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCAGATGTATTTCTTCTTCTTCT	0.517													10	638	---	---	---	---					
OR10A2	341276	broad.mit.edu	37	11	6891253	6891255	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:6891253_6891255delTTC	uc001meu.1	+	1	268_270	c.268_270delTTC	c.(268-270)TTCdel	p.F94del		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	94	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TCAGATGTATTTCTTCTTCTTCT	0.517													12	690	---	---	---	---					
E2F8	79733	broad.mit.edu	37	11	19251461	19251461	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:19251461delG	uc001mpm.2	-	10	1955	c.1433delC	c.(1432-1434)CCAfs	p.P478fs	E2F8_uc009yhv.2_Intron|E2F8_uc001mpn.3_Frame_Shift_Del_p.P478fs	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	478					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						AGCATTCACTGGGGGGTCCAG	0.547													8	1722	---	---	---	---					
MYBPC3	4607	broad.mit.edu	37	11	47359101	47359103	+	In_Frame_Del	DEL	TCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:47359101_47359103delTCT	uc001nfa.3	-	24	2496_2498	c.2441_2443delAGA	c.(2440-2445)AAGAGC>AGC	p.K814del	MYBPC3_uc010rhl.1_Intron	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	813	Fibronectin type-III 1.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		CACCGGTAGCTCTTCTTCTTCTT	0.601													10	402	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	55065031	55065032	+	RNA	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:55065031_55065032insT	uc001nhl.1	-	2		c.391_392insA								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		CAAAGACTGCATTTTTTTTTAG	0.396													7	236	---	---	---	---					
EEF1G	1937	broad.mit.edu	37	11	62334377	62334377	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:62334377delT	uc001ntm.1	-	7	904	c.758delA	c.(757-759)AAGfs	p.K253fs	EEF1G_uc010rlw.1_Frame_Shift_Del_p.K303fs|EEF1G_uc001ntn.1_Frame_Shift_Del_p.K133fs	NM_001404	NP_001395	P26641	EF1G_HUMAN	eukaryotic translation elongation factor 1	253					response to virus	cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						GGCAGCCGCCTTTTTCTCCTC	0.587													7	371	---	---	---	---					
SLC3A2	6520	broad.mit.edu	37	11	62649529	62649529	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:62649529delA	uc001nwd.2	+	5	1116	c.892delA	c.(892-894)AAAfs	p.K298fs	SLC3A2_uc001nwb.2_Frame_Shift_Del_p.K329fs|SLC3A2_uc001nwc.2_Frame_Shift_Del_p.K299fs|SLC3A2_uc001nwe.2_Frame_Shift_Del_p.K267fs|SLC3A2_uc001nwf.2_Frame_Shift_Del_p.K236fs|SLC3A2_uc001nwg.2_Frame_Shift_Del_p.K197fs|SLC3A2_uc010rml.1_5'Flank	NM_002394	NP_002385	P08195	4F2_HUMAN	solute carrier family 3, member 2 isoform c	298	Extracellular (Potential).				blood coagulation|carbohydrate metabolic process|cell growth|cellular nitrogen compound metabolic process|leucine import|leukocyte migration|tryptophan transport	apical plasma membrane|cell surface|integral to membrane|melanosome	calcium:sodium antiporter activity|catalytic activity|cation binding|neutral amino acid transmembrane transporter activity|protein binding				0						GCAATCGGCTAAAAAAAAGAG	0.463													9	365	---	---	---	---					
ATG16L2	89849	broad.mit.edu	37	11	72528863	72528865	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:72528863_72528865delAGG	uc001otd.2	+	3	321_323	c.281_283delAGG	c.(280-285)CAGGAG>CAG	p.E98del	ATG16L2_uc001otc.1_In_Frame_Del_p.E98del|ATG16L2_uc010rrf.1_In_Frame_Del_p.E98del|ATG16L2_uc001ote.2_5'UTR|ATG16L2_uc009ytj.1_In_Frame_Del_p.E98del	NM_033388	NP_203746	Q8NAA4	A16L2_HUMAN	ATG16 autophagy related 16-like 2	98					autophagy|protein transport	cytoplasm	protein binding				0			BRCA - Breast invasive adenocarcinoma(5;2.73e-06)			GTGAAGTGGCAGGAGGAGGAGGA	0.591													7	292	---	---	---	---					
DDX6	1656	broad.mit.edu	37	11	118629613	118629614	+	Splice_Site	INS	-	G	G			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr11:118629613_118629614insG	uc001pub.2	-	9	1226	c.865_splice	c.e9-1	p.N289_splice	DDX6_uc001pua.2_5'UTR|DDX6_uc001puc.2_Splice_Site_p.N289_splice	NM_004397	NP_004388	P26196	DDX6_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6						exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|RNA-induced silencing complex|stress granule	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|RNA helicase activity			ovary(1)	1	all_hematologic(175;0.0839)	Renal(330;0.0183)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)|Hepatocellular(160;0.0893)|Breast(348;0.0979)|all_hematologic(192;0.103)		OV - Ovarian serous cystadenocarcinoma(223;3.39e-06)|BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Colorectal(284;0.0377)		ATGGGAATTCTGGGGGGGGAGC	0.426			T	IGH@	B-NHL								20	772	---	---	---	---					
CHD4	1108	broad.mit.edu	37	12	6711145	6711147	+	In_Frame_Del	DEL	TCC	-	-	rs1639122	byFrequency	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:6711145_6711147delTCC	uc001qpo.2	-	4	581_583	c.417_419delGGA	c.(415-420)GAGGAT>GAT	p.E139del	CHD4_uc001qpn.2_In_Frame_Del_p.E132del|CHD4_uc001qpp.2_In_Frame_Del_p.E136del	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	139	Poly-Asp.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ATCATCATCAtcctcctcctcct	0.384													12	223	---	---	---	---					
CHD4	1108	broad.mit.edu	37	12	6711207	6711209	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:6711207_6711209delCTT	uc001qpo.2	-	4	519_521	c.355_357delAAG	c.(355-357)AAGdel	p.K119del	CHD4_uc001qpn.2_In_Frame_Del_p.K112del|CHD4_uc001qpp.2_In_Frame_Del_p.K116del	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	119	Poly-Lys.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TAGGTCCAAGCTTCTTCTTCTTC	0.468													8	185	---	---	---	---					
CHD4	1108	broad.mit.edu	37	12	6711546	6711546	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:6711546delT	uc001qpo.2	-	3	382	c.218delA	c.(217-219)AAGfs	p.K73fs	CHD4_uc001qpn.2_Frame_Shift_Del_p.K73fs|CHD4_uc001qpp.2_Frame_Shift_Del_p.K70fs	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	73					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ACTCACCTCCTTTTTTTGGCG	0.468													7	1194	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11546732	11546733	+	In_Frame_Ins	INS	-	AGA	AGA			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:11546732_11546733insAGA	uc010shk.1	-	3	314_315	c.279_280insTCT	c.(277-282)insTCT	p.93_94insS		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTTCCTGGAGGTGGGGGACCTT	0.614													9	2488	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11546788	11546790	+	In_Frame_Del	DEL	GGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:11546788_11546790delGGA	uc010shk.1	-	3	257_259	c.222_224delTCC	c.(220-225)CCTCCA>CCA	p.74_75PP>P		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGCTTTCCTGGAGGAGGTGGGG	0.601													12	1716	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11546856	11546858	+	In_Frame_Del	DEL	AGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:11546856_11546858delAGA	uc010shk.1	-	3	189_191	c.154_156delTCT	c.(154-156)TCTdel	p.S52del		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTCCTGGAGGAGATGGGGGACCT	0.557													10	1774	---	---	---	---					
ITPR2	3709	broad.mit.edu	37	12	26749901	26749901	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:26749901delT	uc001rhg.2	-	31	4586	c.4169delA	c.(4168-4170)AATfs	p.N1390fs		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1390	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					AGTGTAGACATTTTTCCCCTC	0.527													7	604	---	---	---	---					
CBX5	23468	broad.mit.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:54645832delT	uc001sfh.3	-	3	635	c.317delA	c.(316-318)AAGfs	p.K106fs	CBX5_uc001sfk.3_Frame_Shift_Del_p.K106fs|CBX5_uc001sfi.3_Frame_Shift_Del_p.K106fs|CBX5_uc001sfj.3_Frame_Shift_Del_p.K106fs	NM_001127322	NP_001120794	P45973	CBX5_HUMAN	heterochromatin protein 1-alpha	106					blood coagulation|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|nuclear centromeric heterochromatin|nuclear envelope|nucleolus|transcriptional repressor complex	methylated histone residue binding|protein binding, bridging|repressing transcription factor binding				0						TACCTCTCTCTTTTTTTTAGA	0.323													8	929	---	---	---	---					
OR10A7	121364	broad.mit.edu	37	12	55615114	55615116	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:55615114_55615116delCTT	uc010spf.1	+	1	306_308	c.306_308delCTT	c.(304-309)TACTTC>TAC	p.F107del		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						CCCAGATGTACTTCTTCTTCTTC	0.414													15	871	---	---	---	---					
OR6C75	390323	broad.mit.edu	37	12	55759486	55759486	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:55759486delT	uc010spk.1	+	1	592	c.592delT	c.(592-594)TTTfs	p.F198fs		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	198	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						ACTCATGGCATTTTTTTTAGC	0.393													11	453	---	---	---	---					
SMARCC2	6601	broad.mit.edu	37	12	56559113	56559113	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:56559113delG	uc001skb.2	-	26	3234	c.3128delC	c.(3127-3129)CCTfs	p.P1043fs	SMARCC2_uc001skd.2_Frame_Shift_Del_p.P1074fs|SMARCC2_uc001ska.2_Frame_Shift_Del_p.P1074fs|SMARCC2_uc001skc.2_Frame_Shift_Del_p.P1073fs|SMARCC2_uc010sqf.1_Frame_Shift_Del_p.P963fs	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1043	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			ATGGGGTCCAGGGGGGGGAAC	0.577													8	588	---	---	---	---					
TIMELESS	8914	broad.mit.edu	37	12	56824025	56824025	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:56824025delT	uc001slf.2	-	10	1118	c.950delA	c.(949-951)AAGfs	p.K317fs	TIMELESS_uc001slg.2_Frame_Shift_Del_p.K316fs	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	317					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TTTAGGCACCTTTTTCGGCTG	0.532													8	472	---	---	---	---					
LRP1	4035	broad.mit.edu	37	12	57605740	57605742	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:57605740_57605742delTGC	uc001snd.2	+	87	13755_13757	c.13289_13291delTGC	c.(13288-13293)TTGCTG>TTG	p.4430_4431LL>L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4430_4431	Helical; (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCTCTGCTGTTGCTGCTGCTGCT	0.557													14	837	---	---	---	---					
CCDC63	160762	broad.mit.edu	37	12	111311658	111311659	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:111311658_111311659insA	uc001trv.1	+	5	577_578	c.382_383insA	c.(382-384)GAAfs	p.E128fs	CCDC63_uc009zvt.1_Frame_Shift_Ins_p.E43fs|CCDC63_uc010sye.1_Frame_Shift_Ins_p.E88fs|CCDC63_uc001trw.1_Frame_Shift_Ins_p.E43fs	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	128	Potential.									skin(6)|ovary(1)|pancreas(1)	8						TCTTCAGATGGAAAAAAAAATC	0.416													14	340	---	---	---	---					
NCOR2	9612	broad.mit.edu	37	12	124915255	124915255	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr12:124915255delG	uc010tba.1	-	9	1078	c.961delC	c.(961-963)CGGfs	p.R321fs	NCOR2_uc010tay.1_Frame_Shift_Del_p.R321fs|NCOR2_uc010taz.1_Frame_Shift_Del_p.R321fs|NCOR2_uc010tbb.1_Frame_Shift_Del_p.R321fs|NCOR2_uc010tbc.1_Frame_Shift_Del_p.R321fs|NCOR2_uc001ugj.1_Frame_Shift_Del_p.R321fs|NCOR2_uc001ugk.1_Frame_Shift_Del_p.R321fs	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	321					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GCCCGCCGCCGGGGGTTGTTC	0.637													7	913	---	---	---	---					
TPTE2	93492	broad.mit.edu	37	13	20041394	20041394	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:20041394delA	uc001umd.2	-	8	694	c.483delT	c.(481-483)TTTfs	p.F161fs	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Intron|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	161	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ACTTAATGTCAAAAAAAATGT	0.303													12	364	---	---	---	---					
LATS2	26524	broad.mit.edu	37	13	21562482	21562483	+	In_Frame_Ins	INS	-	GGGGCG	GGGGCG	rs10658032		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:21562482_21562483insGGGGCG	uc009zzs.2	-	4	1801_1802	c.1436_1437insCGCCCC	c.(1435-1437)CCG>CCCGCCCCG	p.479_479P>PAP	LATS2_uc001unr.3_In_Frame_Ins_p.479_479P>PAP	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	479					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity	p.P479_A480insGR(1)		lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		CCTCCGCAgccggggcgggggc	0.589													12	22	---	---	---	---					
HSPH1	10808	broad.mit.edu	37	13	31715381	31715382	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:31715381_31715382insT	uc001utj.2	-	13	2129_2130	c.1731_1732insA	c.(1729-1734)AAAGTTfs	p.K577fs	HSPH1_uc001utk.2_Frame_Shift_Ins_p.K533fs|HSPH1_uc010aaw.2_Frame_Shift_Ins_p.K536fs|HSPH1_uc001utl.2_Frame_Shift_Ins_p.K579fs|HSPH1_uc010tds.1_Frame_Shift_Ins_p.K501fs	NM_006644	NP_006635	Q92598	HS105_HUMAN	heat shock 105kD	577_578					positive regulation of MHC class I biosynthetic process|positive regulation of NK T cell activation|response to unfolded protein	cytoplasm|extracellular region	ATP binding				0		Lung SC(185;0.0257)		all cancers(112;0.00385)|Epithelial(112;0.0328)|OV - Ovarian serous cystadenocarcinoma(117;0.0375)|GBM - Glioblastoma multiforme(144;0.125)		GGCTGGTCAACTTTTTTTTCAT	0.376													7	396	---	---	---	---					
EEF1DP3	196549	broad.mit.edu	37	13	32527507	32527508	+	RNA	DEL	GT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:32527507_32527508delGT	uc001utu.2	+	4		c.1265_1266delGT			EEF1DP3_uc010tdv.1_Intron|uc001utv.2_RNA					Homo sapiens similar to hypothetical protein FLJ20897, mRNA (cDNA clone IMAGE:5267252).												0						TCTGGCCTGAGTGTGTGTGTGT	0.460													8	289	---	---	---	---					
SPG20	23111	broad.mit.edu	37	13	36903501	36903501	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:36903501delT	uc001uvn.2	-	5	1432	c.1162delA	c.(1162-1164)AGGfs	p.R388fs	SPG20_uc010ten.1_Intron|SPG20_uc001uvm.2_Frame_Shift_Del_p.R388fs|SPG20_uc001uvo.2_Frame_Shift_Del_p.R388fs|SPG20_uc001uvq.2_Frame_Shift_Del_p.R388fs|SPG20_uc001uvp.2_Frame_Shift_Del_p.R388fs	NM_001142296	NP_001135768	Q8N0X7	SPG20_HUMAN	spartin	388					cell death	cytoplasm	ubiquitin protein ligase binding				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;2.42e-08)|Epithelial(112;1.58e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00128)|BRCA - Breast invasive adenocarcinoma(63;0.0125)|GBM - Glioblastoma multiforme(144;0.026)		TTATTTACCCTTTTTCCACGT	0.373													9	1034	---	---	---	---					
LRCH1	23143	broad.mit.edu	37	13	47243183	47243186	+	Frame_Shift_Del	DEL	CCTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:47243183_47243186delCCTG	uc001vbj.2	+	3	707_710	c.471_474delCCTG	c.(469-474)GCCCTGfs	p.A157fs	LRCH1_uc010acp.2_Frame_Shift_Del_p.A157fs|LRCH1_uc001vbk.2_Frame_Shift_Del_p.A157fs|LRCH1_uc001vbl.3_Frame_Shift_Del_p.A157fs	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	157_158	LRR 3.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		AGCTGTCCGCCCTGCCTGCCTGCC	0.436													8	1105	---	---	---	---					
SLITRK5	26050	broad.mit.edu	37	13	88329794	88329796	+	In_Frame_Del	DEL	CGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:88329794_88329796delCGG	uc001vln.2	+	2	2370_2372	c.2151_2153delCGG	c.(2149-2154)TACGGC>TAC	p.G722del	SLITRK5_uc010tic.1_In_Frame_Del_p.G481del	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	722	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					ACAGCGTGTACGGCGGCGGCGGC	0.645													7	386	---	---	---	---					
ABCC4	10257	broad.mit.edu	37	13	95696016	95696016	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr13:95696016delT	uc001vmd.3	-	29	3774	c.3655delA	c.(3655-3657)ATCfs	p.I1219fs	ABCC4_uc010afj.2_Intron|ABCC4_uc010afk.2_Frame_Shift_Del_p.I1172fs	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1219	ABC transporter 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TTCTCCCGGATTTTTTTTTGT	0.378													11	536	---	---	---	---					
ZNF219	51222	broad.mit.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	-	-	rs3841049		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:21560753_21560758delGAGGCT	uc001vzr.2	-	3	1119_1124	c.698_703delAGCCTC	c.(697-705)CAGCCTCCA>CCA	p.QP233del	ZNF219_uc001vzs.2_In_Frame_Del_p.QP233del|ZNF219_uc010aik.1_In_Frame_Del_p.QP233del	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	233_234					negative regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)		ggctggggtggaggctgaggctgagg	0.335											OREG0022565	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	17	---	---	---	---					
SALL2	6297	broad.mit.edu	37	14	21991334	21991336	+	In_Frame_Del	DEL	GGT	-	-	rs113881459		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:21991334_21991336delGGT	uc001wbe.2	-	2	2808_2810	c.2526_2528delACC	c.(2524-2529)CCACCT>CCT	p.842_843PP>P	SALL2_uc010tly.1_In_Frame_Del_p.840_841PP>P|SALL2_uc010tlz.1_In_Frame_Del_p.705_706PP>P|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_In_Frame_Del_p.707_708PP>P|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	842_843	Poly-Pro.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		CAGGCTGTCAGGTGGTGGTGGTG	0.571													7	445	---	---	---	---					
SALL2	6297	broad.mit.edu	37	14	21993077	21993079	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:21993077_21993079delGAG	uc001wbe.2	-	2	1065_1067	c.783_785delCTC	c.(781-786)TCCTCT>TCT	p.261_262SS>S	SALL2_uc010tly.1_In_Frame_Del_p.259_260SS>S|SALL2_uc010tlz.1_Intron|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Intron|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	261_262	Poly-Ser.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		Tgaagaggaagaggaggaggagg	0.512													9	239	---	---	---	---					
LRP10	26020	broad.mit.edu	37	14	23341527	23341529	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:23341527_23341529delCCT	uc001whd.2	+	1	568_570	c.15_17delCCT	c.(13-18)ACCCTC>ACC	p.L11del	LRP10_uc001whe.2_5'Flank	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	11					endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		TGTTGGCCACCCTCCTCCTCCTC	0.670													38	614	---	---	---	---					
ACIN1	22985	broad.mit.edu	37	14	23528502	23528503	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:23528502_23528503delTC	uc001wit.3	-	19	4208_4209	c.3880_3881delGA	c.(3880-3882)GAAfs	p.E1294fs	CDH24_uc001wil.2_5'Flank|CDH24_uc010akf.2_5'Flank|CDH24_uc001win.3_5'Flank|ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_Frame_Shift_Del_p.E536fs|ACIN1_uc001wiq.3_Frame_Shift_Del_p.E536fs|ACIN1_uc001wir.3_Frame_Shift_Del_p.E567fs|ACIN1_uc001wis.3_Frame_Shift_Del_p.E975fs|ACIN1_uc010akg.2_Frame_Shift_Del_p.E1281fs	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	1294	Arg/Asp/Glu/Lys-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		ccgctccctttctctctctctc	0.436											OREG0022595	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	278	---	---	---	---					
FAM158A	51016	broad.mit.edu	37	14	24610422	24610422	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:24610422delA	uc001wmi.2	-	2	255	c.92delT	c.(91-93)TTGfs	p.L31fs		NM_016049	NP_057133	Q9Y3B6	F158A_HUMAN	hypothetical protein LOC51016	31											0						CGCTGGCGCCAAAAACAGCCC	0.657											OREG0022618	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	700	---	---	---	---					
IPO4	79711	broad.mit.edu	37	14	24655611	24655611	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:24655611delA	uc001wmv.1	-	10	1018	c.887delT	c.(886-888)TTCfs	p.F296fs	IPO4_uc001wmt.1_5'Flank|IPO4_uc001wmu.2_5'UTR|IPO4_uc001wmx.1_Frame_Shift_Del_p.F160fs|IPO4_uc001wmy.1_Frame_Shift_Del_p.F160fs|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Frame_Shift_Del_p.F296fs	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	296					intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		CACAATGGGGAAAAGGGTGTG	0.567													7	1181	---	---	---	---					
G2E3	55632	broad.mit.edu	37	14	31074771	31074772	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:31074771_31074772insA	uc001wqk.2	+	11	1225_1226	c.1071_1072insA	c.(1069-1074)ATTAAAfs	p.I357fs	G2E3_uc010tpe.1_Intron|G2E3_uc010tpf.1_Frame_Shift_Ins_p.I311fs	NM_017769	NP_060239	Q7L622	G2E3_HUMAN	G2/M-phase specific E3 ubiquitin ligase	357_358					apoptosis|multicellular organismal development|protein modification process	Golgi apparatus|nucleolus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						GATTCCAAATTAAAAAAAAAAC	0.272													10	125	---	---	---	---					
FANCM	57697	broad.mit.edu	37	14	45642288	45642289	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:45642288_45642289delCT	uc001wwd.3	+	13	2290_2291	c.2191_2192delCT	c.(2191-2193)CTCfs	p.L731fs	FANCM_uc010anf.2_Frame_Shift_Del_p.L705fs|FANCM_uc001wwe.3_Frame_Shift_Del_p.L267fs|FANCM_uc010ang.2_5'Flank	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	731					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						AATTCATCAACTCTCTCTCTCT	0.347								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				12	398	---	---	---	---					
C14orf106	55320	broad.mit.edu	37	14	45711240	45711241	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:45711240_45711241insT	uc001wwf.2	-	4	1598_1599	c.1139_1140insA	c.(1138-1140)AATfs	p.N380fs	C14orf106_uc010anh.2_RNA	NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	380					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						TTCCCACCTGATTTTTTTTAAG	0.307													9	440	---	---	---	---					
BTBD7	55727	broad.mit.edu	37	14	93712186	93712188	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:93712186_93712188delTGC	uc001ybo.2	-	10	2892_2894	c.2566_2568delGCA	c.(2566-2568)GCAdel	p.A856del	BTBD7_uc010aur.2_In_Frame_Del_p.A381del|BTBD7_uc010two.1_In_Frame_Del_p.A676del|BTBD7_uc001ybp.2_In_Frame_Del_p.A505del	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	856	Poly-Ala.									pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		GCTTCTCAGAtgctgctgctgct	0.453													8	229	---	---	---	---					
C14orf49	161176	broad.mit.edu	37	14	95921888	95921890	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:95921888_95921890delCTC	uc001yei.3	-	5	976_978	c.961_963delGAG	c.(961-963)GAGdel	p.E321del	C14orf49_uc010avi.2_In_Frame_Del_p.E321del|C14orf49_uc001yej.1_In_Frame_Del_p.E321del	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	321	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CCCGCAGCCGCTCCTCCTCCTCC	0.616													14	677	---	---	---	---					
CCNK	8812	broad.mit.edu	37	14	99969244	99969246	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:99969244_99969246delCAG	uc001ygi.3	+	8	1064_1066	c.934_936delCAG	c.(934-936)CAGdel	p.Q315del	CCNK_uc001ygg.3_Intron	NM_001099402	NP_001092872	O75909	CCNK_HUMAN	cyclin K isoform 1	315	Poly-Gln.				cell division|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein kinase binding				0		all_cancers(154;0.224)|all_epithelial(191;0.0643)|Melanoma(154;0.0866)				GCAACCAGCCCAGCAGCAGCAGC	0.621													7	669	---	---	---	---					
MTA1	9112	broad.mit.edu	37	14	105932775	105932776	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:105932775_105932776insC	uc001yqx.2	+	17	1824_1825	c.1637_1638insC	c.(1636-1638)CGCfs	p.R546fs	MTA1_uc001yqy.2_RNA|MTA1_uc001yrb.2_Frame_Shift_Ins_p.R307fs	NM_004689	NP_004680	Q13330	MTA1_HUMAN	metastasis associated protein	546	SH3-binding (Potential).				signal transduction	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(154;0.0293)|all_epithelial(191;0.128)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00897)|Epithelial(46;0.026)	Epithelial(152;0.19)		ACCCACCCCCGCCCCCCCAAGC	0.688													7	146	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106691799	106691801	+	RNA	DEL	ACT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr14:106691799_106691801delACT	uc010tyt.1	-	754		c.20562_20564delAGT								Parts of antibodies, mostly variable regions.												0						AGTATATGTAACTACTACTACTA	0.517													12	1409	---	---	---	---					
HERC2	8924	broad.mit.edu	37	15	28518115	28518115	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:28518115delC	uc001zbj.2	-	8	942	c.836delG	c.(835-837)GGAfs	p.G279fs	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	279					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GGGGATGCTTCCTGGCCCTTT	0.592													12	359	---	---	---	---					
BUB1B	701	broad.mit.edu	37	15	40477505	40477506	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:40477505_40477506insC	uc001zkx.3	+	7	1103_1104	c.891_892insC	c.(889-894)GCACCCfs	p.A297fs	BUB1B_uc010ucl.1_Frame_Shift_Ins_p.A160fs	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	297_298					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		CATGGATAGCACCCCCCATGCC	0.475			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				7	1049	---	---	---	---					
SPINT1	6692	broad.mit.edu	37	15	41149075	41149077	+	In_Frame_Del	DEL	CAC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:41149075_41149077delCAC	uc001zna.2	+	11	1696_1698	c.1492_1494delCAC	c.(1492-1494)CACdel	p.H501del	SPINT1_uc001znb.2_In_Frame_Del_p.H485del|SPINT1_uc001znc.2_In_Frame_Del_p.H485del|SPINT1_uc010ucs.1_In_Frame_Del_p.H492del	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	501						extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		CTTCCACGGACACCACCACCACC	0.586													8	1370	---	---	---	---					
ZNF609	23060	broad.mit.edu	37	15	64972995	64972997	+	In_Frame_Del	DEL	CAC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:64972995_64972997delCAC	uc002ann.2	+	7	4096_4098	c.4096_4098delCAC	c.(4096-4098)CACdel	p.H1371del		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	1371	Poly-His.					nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GATGTCCACACACCACCACCACC	0.576													23	939	---	---	---	---					
ARID3B	10620	broad.mit.edu	37	15	74888025	74888027	+	In_Frame_Del	DEL	CAG	-	-	rs141710149		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:74888025_74888027delCAG	uc002aye.2	+	9	1797_1799	c.1596_1598delCAG	c.(1594-1599)GCCAGC>GCC	p.S538del	ARID3B_uc002ayd.2_In_Frame_Del_p.S537del|CLK3_uc002ayf.1_5'Flank	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	538	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						gcagcagcgccagcagcagcagc	0.547													10	224	---	---	---	---					
VPS33B	26276	broad.mit.edu	37	15	91550236	91550238	+	In_Frame_Del	DEL	TCC	-	-	rs147271815		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:91550236_91550238delTCC	uc002bqp.1	-	9	996_998	c.642_644delGGA	c.(640-645)GAGGAT>GAT	p.E214del	VPS33B_uc002bqq.1_In_Frame_Del_p.E123del|VPS33B_uc010uqu.1_In_Frame_Del_p.E187del	NM_018668	NP_061138	Q9H267	VP33B_HUMAN	vacuolar protein sorting 33B (yeast homolog))	214					cellular membrane fusion|lysosome localization|melanosome localization|platelet alpha granule organization|protein transport|vesicle docking involved in exocytosis	late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm|platelet alpha granule	protein binding			ovary(2)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					GGTTTCGCCATCCTCCTCCTCCT	0.522													12	813	---	---	---	---					
C15orf51	196968	broad.mit.edu	37	15	100340032	100340034	+	RNA	DEL	AGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr15:100340032_100340034delAGA	uc010urx.1	-	4		c.893_895delTCT			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_RNA|uc002bvq.2_RNA|uc002bvt.1_5'Flank	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						AGCAGCTCTGAGAAGATGAACTC	0.606													7	147	---	---	---	---					
EME2	197342	broad.mit.edu	37	16	1824298	1824300	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:1824298_1824300delTGC	uc002cmq.1	+	3	422_424	c.422_424delTGC	c.(421-426)TTGCTG>TTG	p.141_142LL>L	NME3_uc002cmm.2_5'Flank|NME3_uc010brv.2_5'Flank|MRPS34_uc002cmn.2_5'Flank|MRPS34_uc002cmo.2_5'Flank|MRPS34_uc002cmp.1_5'Flank|EME2_uc010brw.1_In_Frame_Del_p.141_142LL>L	NM_001010865	NP_001010865	A4GXA9	EME2_HUMAN	essential meiotic endonuclease 1 homolog 2	141_142					DNA recombination|DNA repair	nucleus	DNA binding|endonuclease activity			lung(1)|central_nervous_system(1)|pancreas(1)	3						GAACAGGAATTGCTGCTGCTGCT	0.655								Direct_reversal_of_damage|Homologous_recombination					15	602	---	---	---	---					
ABCA3	21	broad.mit.edu	37	16	2369649	2369651	+	In_Frame_Del	DEL	AGC	-	-	rs145342500		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:2369649_2369651delAGC	uc002cpy.1	-	8	1516_1518	c.804_806delGCT	c.(802-807)CTGCTC>CTC	p.268_269LL>L	ABCA3_uc010bsk.1_In_Frame_Del_p.268_269LL>L|ABCA3_uc010bsl.1_In_Frame_Del_p.268_269LL>L	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	268_269	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GGTGAAGCTGAGCAGCAGCAGCA	0.611													11	600	---	---	---	---					
C16orf62	57020	broad.mit.edu	37	16	19580800	19580802	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:19580800_19580802delTCC	uc002dgn.1	+	3	184_186	c.172_174delTCC	c.(172-174)TCCdel	p.S64del	C16orf62_uc002dgo.1_In_Frame_Del_p.S64del|C16orf62_uc010vas.1_5'UTR|C16orf62_uc002dgm.1_In_Frame_Del_p.S64del	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	64	Ser-rich.					integral to membrane				ovary(1)	1						TTCTTCCACGTCCTCCTCCTCCT	0.562													8	472	---	---	---	---					
DNAH3	55567	broad.mit.edu	37	16	21132130	21132132	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:21132130_21132132delCAG	uc010vbe.1	-	11	1628_1630	c.1628_1630delCTG	c.(1627-1632)GCTGAT>GAT	p.A543del	DNAH3_uc002die.2_Intron	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	543	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CATTGCCGATCAGCAGCAGCAGC	0.498													8	302	---	---	---	---					
RABEP2	79874	broad.mit.edu	37	16	28931200	28931202	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:28931200_28931202delCTG	uc002drq.2	-	3	385_387	c.337_339delCAG	c.(337-339)CAGdel	p.Q113del	uc010vct.1_Intron|RABEP2_uc010vdf.1_In_Frame_Del_p.Q42del|RABEP2_uc010byn.2_In_Frame_Del_p.Q113del|RABEP2_uc002drr.2_In_Frame_Del_p.Q113del	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	113	Poly-Gln.|Potential.				endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						CCTCACAGTCCTGCTGCTGCTGC	0.527													16	322	---	---	---	---					
CD2BP2	10421	broad.mit.edu	37	16	30365550	30365552	+	In_Frame_Del	DEL	CAT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:30365550_30365552delCAT	uc002dxr.2	-	2	423_425	c.170_172delATG	c.(169-174)GATGGG>GGG	p.D57del	CD2BP2_uc002dxs.2_In_Frame_Del_p.D57del	NM_006110	NP_006101	O95400	CD2B2_HUMAN	CD2 antigen (cytoplasmic tail) binding protein	57					assembly of spliceosomal tri-snRNP	cytoplasm|nucleoplasm|U5 snRNP	protein binding|ribonucleoprotein binding			ovary(1)	1						CTGGACCCCCCATCATCATCATC	0.532													20	1631	---	---	---	---					
FHOD1	29109	broad.mit.edu	37	16	67267852	67267852	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:67267852delG	uc002esl.2	-	13	1866	c.1754delC	c.(1753-1755)CCTfs	p.P585fs	FHOD1_uc010ced.2_Frame_Shift_Del_p.P392fs|FHOD1_uc010vjh.1_Frame_Shift_Del_p.P245fs	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	585	FH1.|Poly-Pro.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding	p.P585fs*43(1)		breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		AAGTGGGGGAGGGGGGGGTAC	0.622													8	316	---	---	---	---					
CDH3	1001	broad.mit.edu	37	16	68718504	68718504	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:68718504delA	uc002ewf.2	+	10	2333	c.1201delA	c.(1201-1203)AAAfs	p.K401fs	CDH3_uc010vli.1_Frame_Shift_Del_p.K346fs	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	401	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		TTTTGAGGCCAAAAACCAGCA	0.522													10	1494	---	---	---	---					
NOB1	28987	broad.mit.edu	37	16	69782978	69782980	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:69782978_69782980delTCC	uc002exs.2	-	6	583_585	c.567_569delGGA	c.(565-570)GAGGAA>GAA	p.189_190EE>E		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	189_190	Poly-Glu.					nucleus	metal ion binding|protein binding				0						CCCGTTTTCTTCCTCCTCCTCCT	0.522													31	532	---	---	---	---					
WDR59	79726	broad.mit.edu	37	16	74976690	74976691	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr16:74976690_74976691insT	uc002fdh.1	-	7	581_582	c.479_480insA	c.(478-480)AATfs	p.N160fs	WDR59_uc002fdi.2_Frame_Shift_Ins_p.N160fs|WDR59_uc002fdj.2_Frame_Shift_Ins_p.N160fs	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	160	WD 3.									ovary(1)|breast(1)	2						GGCAGTTAGCATTTTTTTTATT	0.500													7	385	---	---	---	---					
FXR2	9513	broad.mit.edu	37	17	7495872	7495874	+	In_Frame_Del	DEL	CGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:7495872_7495874delCGG	uc002gia.1	-	15	2000_2002	c.1773_1775delCCG	c.(1771-1776)CGCCGT>CGT	p.591_592RR>R	MPDU1_uc010vuc.1_3'UTR|SOX15_uc002ghy.1_5'Flank|SOX15_uc002ghz.1_5'Flank	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	591_592	Poly-Arg.					cytosolic large ribosomal subunit	protein binding|RNA binding				0				READ - Rectum adenocarcinoma(115;0.17)		ACCACGGTTACGGCGGCGGCGGC	0.547													21	1459	---	---	---	---					
CHD3	1107	broad.mit.edu	37	17	7796808	7796809	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:7796808_7796809insC	uc002gje.2	+	5	864_865	c.714_715insC	c.(712-717)GGACCCfs	p.G238fs	CHD3_uc002gjd.2_Frame_Shift_Ins_p.G297fs|CHD3_uc002gjf.2_Frame_Shift_Ins_p.G238fs|CHD3_uc002gjg.1_Frame_Shift_Ins_p.G70fs	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	238_239					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CACCCTCCGGACCCCCCGCCCT	0.480													8	223	---	---	---	---					
CHD3	1107	broad.mit.edu	37	17	7801857	7801859	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:7801857_7801859delAAG	uc002gje.2	+	13	2245_2247	c.2095_2097delAAG	c.(2095-2097)AAGdel	p.K703del	CHD3_uc002gjd.2_In_Frame_Del_p.K762del|CHD3_uc002gjf.2_In_Frame_Del_p.K703del	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	703	Poly-Lys.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CCGCAAGTATAAGAAGAAGAAGA	0.488													11	287	---	---	---	---					
NDEL1	81565	broad.mit.edu	37	17	8370271	8370273	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:8370271_8370273delCTC	uc002glj.2	+	9	1165_1167	c.968_970delCTC	c.(967-972)GCTCCT>GCT	p.P327del	NDEL1_uc002gli.2_3'UTR|NDEL1_uc002glk.1_RNA	NM_030808	NP_110435	Q9GZM8	NDEL1_HUMAN	nudE nuclear distribution gene E homolog (A.	327	Interaction with CENPF.|Interaction with NEFL (By similarity).				chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|microtubule|spindle					0						TTTGACCCCGCTCCTCCTCCTCC	0.576													7	702	---	---	---	---					
MYH10	4628	broad.mit.edu	37	17	8397095	8397097	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:8397095_8397097delCCT	uc002gll.2	-	30	4166_4168	c.4070_4072delAGG	c.(4069-4074)GAGGCC>GCC	p.E1357del	MYH10_uc002glm.2_In_Frame_Del_p.E1388del|MYH10_uc010cnx.2_In_Frame_Del_p.E1366del	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1357	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TTCTTCCTGGCCTCCTCCTCCTC	0.596													14	300	---	---	---	---					
SUPT6H	6830	broad.mit.edu	37	17	27001303	27001305	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:27001303_27001305delGAG	uc002hby.2	+	3	202_204	c.112_114delGAG	c.(112-114)GAGdel	p.E43del	SUPT6H_uc010crt.2_In_Frame_Del_p.E43del	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	43	Asp/Glu-rich.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					TCTTCCAGATGAGGAGGAGGAGG	0.453													8	247	---	---	---	---					
WNK4	65266	broad.mit.edu	37	17	40939528	40939528	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:40939528delT	uc002ibj.2	+	7	1730	c.1709delT	c.(1708-1710)CTTfs	p.L570fs	WNK4_uc010wgx.1_Frame_Shift_Del_p.L234fs|WNK4_uc002ibk.1_Frame_Shift_Del_p.L342fs|WNK4_uc010wgy.1_5'UTR	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	570					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CAGCCCTTCCTTTTCCGCCAC	0.617													7	1380	---	---	---	---					
SPAG9	9043	broad.mit.edu	37	17	49157025	49157025	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:49157025delT	uc002itc.2	-	2	553	c.344delA	c.(343-345)AAGfs	p.K115fs	SPAG9_uc002itb.2_Frame_Shift_Del_p.K115fs|SPAG9_uc002itd.2_Frame_Shift_Del_p.K115fs|SPAG9_uc002itf.2_5'UTR	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	115	Potential.				positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			CTGTAAGTCCTTTTTTTCCTG	0.313													8	516	---	---	---	---					
KCNH6	81033	broad.mit.edu	37	17	61620959	61620959	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:61620959delC	uc002jay.2	+	10	2251	c.2171delC	c.(2170-2172)TCCfs	p.S724fs	KCNH6_uc010wpl.1_Frame_Shift_Del_p.S601fs|KCNH6_uc010wpm.1_Frame_Shift_Del_p.S724fs|KCNH6_uc002jaz.1_Frame_Shift_Del_p.S671fs	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	724	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	CTCCACTCATCCCCCCGACAG	0.597													7	576	---	---	---	---					
FTSJ3	117246	broad.mit.edu	37	17	61897291	61897291	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:61897291delT	uc002jbz.2	-	20	2493	c.2415delA	c.(2413-2415)AAAfs	p.K805fs	FTSJ3_uc002jca.2_Frame_Shift_Del_p.K805fs	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	805					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						GGCCCACACCTTTTTTGGCTA	0.532													7	647	---	---	---	---					
BPTF	2186	broad.mit.edu	37	17	65822267	65822269	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:65822267_65822269delGAG	uc002jgf.2	+	1	488_490	c.427_429delGAG	c.(427-429)GAGdel	p.E148del	BPTF_uc002jge.2_In_Frame_Del_p.E148del|BPTF_uc010wqm.1_In_Frame_Del_p.E148del	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	148	Glu-rich.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			catggtctccgaggaggaggagg	0.473													11	110	---	---	---	---					
ITGB4	3691	broad.mit.edu	37	17	73732157	73732158	+	Frame_Shift_Del	DEL	GT	-	-	rs121912463		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr17:73732157_73732158delGT	uc002jpg.2	+	14	1870_1871	c.1683_1684delGT	c.(1681-1686)CAGTGTfs	p.Q561fs	ITGB4_uc002jph.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc010dgo.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc002jpi.3_Frame_Shift_Del_p.Q561fs|ITGB4_uc010dgp.1_Frame_Shift_Del_p.Q561fs|ITGB4_uc002jpj.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc010wsh.1_Frame_Shift_Del_p.Q116fs	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	561_562	III.|Extracellular (Potential).|Cysteine-rich tandem repeats.		C -> R (in EB-PA; mild form).		cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCATGGGCCAGTGTGTGTGTGA	0.604													7	1014	---	---	---	---					
HAUS1	115106	broad.mit.edu	37	18	43685174	43685174	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr18:43685174delA	uc002lbu.2	+	2	125	c.45delA	c.(43-45)TTAfs	p.L15fs	ATP5A1_uc002lbt.1_5'Flank|HAUS1_uc002lbv.2_5'UTR	NM_138443	NP_612452	Q96CS2	HAUS1_HUMAN	coiled-coil domain containing 5	15					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole				ovary(1)	1						CTGCGTGGTTAAAAAAAATAT	0.393													7	231	---	---	---	---					
CXXC1	30827	broad.mit.edu	37	18	47812275	47812277	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr18:47812275_47812277delCTG	uc002leq.3	-	5	1214_1216	c.481_483delCAG	c.(481-483)CAGdel	p.Q161del	CXXC1_uc002lep.3_In_Frame_Del_p.Q18del|CXXC1_uc002ler.3_In_Frame_Del_p.Q161del|CXXC1_uc010doy.2_In_Frame_Del_p.Q161del|CXXC1_uc002les.2_In_Frame_Del_p.Q161del	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	161	CXXC-type.				histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						ACCGTTTGATctgctgctgctgc	0.468													10	217	---	---	---	---					
ADNP2	22850	broad.mit.edu	37	18	77894260	77894261	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr18:77894260_77894261insC	uc002lnw.2	+	4	1419_1420	c.964_965insC	c.(964-966)TCCfs	p.S322fs		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	322	Pro-rich.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CCTCACTCATTCCCCCCCTGCT	0.644													11	481	---	---	---	---					
CNN2	1265	broad.mit.edu	37	19	1037646	1037646	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:1037646delC	uc002lqu.2	+	7	1040	c.677delC	c.(676-678)ACCfs	p.T226fs	ABCA7_uc002lqw.3_5'Flank|CNN2_uc002lqv.2_Frame_Shift_Del_p.T187fs|CNN2_uc010xgb.1_Frame_Shift_Del_p.T215fs|CNN2_uc010xgc.1_Frame_Shift_Del_p.T247fs|ABCA7_uc010dsa.2_5'Flank	NM_004368	NP_004359	Q99439	CNN2_HUMAN	calponin 2 isoform a	226	Calponin-like 2.				actomyosin structure organization|cellular response to mechanical stimulus|regulation of actin filament-based process	cell-cell junction|stress fiber	actin binding|calmodulin binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCCCGGGACCCGGCGGCAC	0.552													7	948	---	---	---	---					
MLLT1	4298	broad.mit.edu	37	19	6222272	6222274	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:6222272_6222274delAGG	uc002mek.2	-	6	1132_1134	c.968_970delCCT	c.(967-972)TCCTTC>TTC	p.S323del		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	323	Poly-Ser.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						TTGTCCGAGAAGGAGGAGGAGGA	0.650			T	MLL	AL								8	304	---	---	---	---					
XAB2	56949	broad.mit.edu	37	19	7684652	7684657	+	In_Frame_Del	DEL	CTCGTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:7684652_7684657delCTCGTC	uc002mgx.2	-	18	2508_2513	c.2482_2487delGACGAG	c.(2482-2487)GACGAGdel	p.DE828del		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	828_829					transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						CCAGGTCCATCTCGTCCTCGTCCTCG	0.699								Direct_reversal_of_damage|NER					8	1411	---	---	---	---					
NWD1	284434	broad.mit.edu	37	19	16908642	16908642	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:16908642delT	uc002neu.3	+	16	3826	c.3404delT	c.(3403-3405)GTTfs	p.V1135fs	NWD1_uc002net.3_Frame_Shift_Del_p.V1000fs|NWD1_uc002nev.3_Frame_Shift_Del_p.V929fs			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1135	WD 8.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAGACGGCTGTTTTTGGTACT	0.552													8	1564	---	---	---	---					
CRTC1	23373	broad.mit.edu	37	19	18887993	18887993	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:18887993delC	uc002nkb.3	+	14	1794	c.1706delC	c.(1705-1707)TCCfs	p.S569fs	CRTC1_uc010ebv.2_Frame_Shift_Del_p.S585fs|CRTC1_uc010ebw.2_Frame_Shift_Del_p.S405fs|CRTC1_uc002nkc.3_Frame_Shift_Del_p.S267fs	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	569					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						ACAGGAGAGTCCCCCCCCAGC	0.617													11	528	---	---	---	---					
NUDT19	390916	broad.mit.edu	37	19	33200189	33200190	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:33200189_33200190delCT	uc010edf.2	+	2	813_814	c.813_814delCT	c.(811-816)GCCTCTfs	p.A271fs		NM_001105570	NP_001099040	A8MXV4	NUD19_HUMAN	nudix (nucleoside diphosphate linked moiety	271_272						mitochondrion|peroxisome	hydrolase activity|metal ion binding				0	Esophageal squamous(110;0.137)					CAAACTTTGCCTCTCTCTCTGA	0.450													7	904	---	---	---	---					
C19orf55	148137	broad.mit.edu	37	19	36255947	36255949	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:36255947_36255949delCTC	uc002obq.1	+	7	712_714	c.639_641delCTC	c.(637-642)ATCTCC>ATC	p.S218del		NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	218	Ser-rich.									ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AAGCCTCCATCTCCTCCTCCTCC	0.631													15	1382	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	38948159	38948160	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:38948159_38948160delTG	uc002oit.2	+	17	1944_1945	c.1814_1815delTG	c.(1813-1815)CTGfs	p.L605fs	RYR1_uc002oiu.2_Frame_Shift_Del_p.L605fs	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	605	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTATGCTCCCTGTGTGTGTGTA	0.530													12	1291	---	---	---	---					
SERTAD1	29950	broad.mit.edu	37	19	40929409	40929411	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:40929409_40929411delCTC	uc002ont.3	-	2	202_204	c.43_45delGAG	c.(43-45)GAGdel	p.E15del		NM_013376	NP_037508	Q9UHV2	SRTD1_HUMAN	SERTA domain containing 1	15					positive regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GAGGTTCCTTCTCCTCCTCCTCC	0.453													14	498	---	---	---	---					
ERF	2077	broad.mit.edu	37	19	42753149	42753151	+	In_Frame_Del	DEL	GAA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:42753149_42753151delGAA	uc002ote.3	-	4	1271_1273	c.1113_1115delTTC	c.(1111-1116)TCTTCC>TCC	p.371_372SS>S	ERF_uc002otd.3_In_Frame_Del_p.102_103SS>S	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	371_372	Poly-Ser.				cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				GAATGGGGAGGAAGAAGAAGAAG	0.680													7	566	---	---	---	---					
TEAD2	8463	broad.mit.edu	37	19	49850511	49850511	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:49850511delT	uc002pnj.2	-	9	936	c.845delA	c.(844-846)AAGfs	p.K282fs	TEAD2_uc002png.2_Frame_Shift_Del_p.K285fs|TEAD2_uc002pnh.2_Frame_Shift_Del_p.K286fs|TEAD2_uc002pni.2_Frame_Shift_Del_p.K285fs|TEAD2_uc010yao.1_Frame_Shift_Del_p.K154fs|TEAD2_uc010emw.2_Frame_Shift_Del_p.K285fs	NM_003598	NP_003589	Q15562	TEAD2_HUMAN	TEA domain family member 2	282	Transcriptional activation (Potential).				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3		all_lung(116;7.65e-05)|Lung NSC(112;0.000132)|all_neural(266;0.0506)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00093)|GBM - Glioblastoma multiforme(486;0.0467)		GAGGCCACCCTTTTTCTCAGG	0.572													9	1306	---	---	---	---					
FLT3LG	2323	broad.mit.edu	37	19	49978960	49978962	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:49978960_49978962delCTG	uc010yau.1	+	3	136_138	c.46_48delCTG	c.(46-48)CTGdel	p.L20del	FLT3LG_uc002pnv.2_5'UTR|FLT3LG_uc002pnw.2_5'UTR|FLT3LG_uc002pnu.2_In_Frame_Del_p.L20del|FLT3LG_uc002pnx.2_In_Frame_Del_p.L20del|FLT3LG_uc010yav.1_5'UTR	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	20					positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CTATCTCCTCCTGCTGCTGCTGC	0.621													16	538	---	---	---	---					
LILRB1	10859	broad.mit.edu	37	19	55146148	55146150	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr19:55146148_55146150delCTC	uc002qgj.2	+	11	1757_1759	c.1417_1419delCTC	c.(1417-1419)CTCdel	p.L479del	LILRB1_uc010erp.1_In_Frame_Del_p.L94del|LILRB1_uc002qgl.2_In_Frame_Del_p.L479del|LILRB1_uc002qgk.2_In_Frame_Del_p.L480del|LILRB1_uc002qgm.2_In_Frame_Del_p.L480del|LILRB1_uc010erq.2_In_Frame_Del_p.L463del|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	479	Helical; (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity	p.L479del(1)		large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CAtcctactgctcctcctcctcc	0.458										HNSCC(37;0.09)			22	358	---	---	---	---					
ATP6V1C2	245973	broad.mit.edu	37	2	10917819	10917820	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:10917819_10917820delAG	uc002ras.2	+	11	1043_1044	c.934_935delAG	c.(934-936)AGAfs	p.R312fs	ATP6V1C2_uc002rat.2_Intron	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	312					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		GCAGACCGACAGAGAGAGAGAG	0.604													28	549	---	---	---	---					
PUM2	23369	broad.mit.edu	37	2	20482977	20482979	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:20482977_20482979delGCT	uc002rds.1	-	11	1472_1474	c.1449_1451delAGC	c.(1447-1452)GCAGCT>GCT	p.483_484AA>A	PUM2_uc002rdt.1_In_Frame_Del_p.483_484AA>A|PUM2_uc002rdr.2_In_Frame_Del_p.422_423AA>A|PUM2_uc010yjy.1_In_Frame_Del_p.483_484AA>A|PUM2_uc002rdu.1_In_Frame_Del_p.483_484AA>A|PUM2_uc010yjz.1_In_Frame_Del_p.422_423AA>A	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	483_484	Ala-rich.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGTTCCTCCAGCTGCTGCTGCTG	0.424													9	521	---	---	---	---					
ASXL2	55252	broad.mit.edu	37	2	26022304	26022306	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:26022304_26022306delCTG	uc002rgs.2	-	4	572_574	c.351_353delCAG	c.(349-354)AGCAGT>AGT	p.117_118SS>S		NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	117_118	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCACCATCACTGCTGCTGCTGC	0.463													23	782	---	---	---	---					
OTOF	9381	broad.mit.edu	37	2	26693554	26693556	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:26693554_26693556delCTT	uc002rhk.2	-	32	4055_4057	c.3928_3930delAAG	c.(3928-3930)AAGdel	p.K1310del	OTOF_uc010yla.1_In_Frame_Del_p.K40del|OTOF_uc002rhh.2_In_Frame_Del_p.K543del|OTOF_uc002rhi.2_In_Frame_Del_p.K620del|OTOF_uc002rhj.2_In_Frame_Del_p.K543del	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1310	Cytoplasmic (Potential).|Poly-Lys.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGCAGTGCCcttcttcttcttc	0.507													11	435	---	---	---	---					
DHX57	90957	broad.mit.edu	37	2	39074185	39074185	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:39074185delA	uc002rrf.2	-	11	2294	c.2195delT	c.(2194-2196)TTGfs	p.L732fs	DHX57_uc002rrd.3_Frame_Shift_Del_p.L116fs|DHX57_uc002rre.2_Frame_Shift_Del_p.L165fs	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	732							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TGCATCTTCCAAAAAAAATTG	0.259													16	229	---	---	---	---					
USP34	9736	broad.mit.edu	37	2	61575023	61575025	+	In_Frame_Del	DEL	TGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:61575023_61575025delTGG	uc002sbe.2	-	15	2287_2289	c.2265_2267delCCA	c.(2263-2268)CACCAT>CAT	p.755_756HH>H		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	755_756					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			gtggtggtgatggtggtggtggt	0.281													10	381	---	---	---	---					
RAB11FIP5	26056	broad.mit.edu	37	2	73315337	73315339	+	In_Frame_Del	DEL	TGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:73315337_73315339delTGG	uc002siu.3	-	3	1648_1650	c.1407_1409delCCA	c.(1405-1410)CACCAA>CAA	p.H469del	RAB11FIP5_uc002sit.3_In_Frame_Del_p.H391del	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	469					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						ACTTAGGCCTTGGTGGTGGTGGT	0.635													7	925	---	---	---	---					
RGPD1	400966	broad.mit.edu	37	2	87211874	87211875	+	Splice_Site	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:87211874_87211875insC	uc010fgv.2	+	19	2649	c.2582_splice	c.e19-2	p.V861_splice	RMND5A_uc002srs.3_Intron|RGPD1_uc002ssb.2_Splice_Site_p.V850_splice|RGPD1_uc002ssc.2_Splice_Site_p.V118_splice	NM_001024457	NP_001019628	Q68DN6	RGPD1_HUMAN	RANBP2-like and GRIP domain containing 1						intracellular transport		binding				0						tttttttttttAGTTGCAACTA	0.312													14	283	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	90458648	90458648	+	RNA	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:90458648delT	uc010fhm.2	+	31		c.4267delT								Parts of antibodies, mostly variable regions.																		CTTATTACTGTCAACAGAGTG	0.512													9	3710	---	---	---	---					
TMEM127	55654	broad.mit.edu	37	2	96919781	96919783	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:96919781_96919783delTGC	uc002svq.2	-	4	737_739	c.480_482delGCA	c.(478-483)CAGCAT>CAT	p.Q160del	TMEM127_uc002svr.2_In_Frame_Del_p.Q160del	NM_017849	NP_060319	O75204	TM127_HUMAN	transmembrane protein 127	160					negative regulation of cell proliferation|negative regulation of TOR signaling cascade	cytoplasm|integral to membrane|plasma membrane					0						GTACTTCTTATGCTGCTGCTGCT	0.557									Pheochromocytoma_(Adrenal)_Familial				15	538	---	---	---	---					
REV1	51455	broad.mit.edu	37	2	100055102	100055102	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:100055102delT	uc002tad.2	-	6	1386	c.1174delA	c.(1174-1176)ATGfs	p.M392fs	REV1_uc002tac.2_Frame_Shift_Del_p.M392fs|REV1_uc002tae.1_Frame_Shift_Del_p.M371fs	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	392					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						CCTGTTTTCATTTTTTTTAAC	0.348								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					12	499	---	---	---	---					
SLC20A1	6574	broad.mit.edu	37	2	113416607	113416608	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:113416607_113416608delAG	uc002tib.2	+	7	1430_1431	c.984_985delAG	c.(982-987)CCAGAGfs	p.P328fs	SLC20A1_uc002tic.1_Frame_Shift_Del_p.P140fs	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	328_329	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						AGGAAGCTCCAGAGAGAGAGAG	0.515													14	415	---	---	---	---					
PLA2R1	22925	broad.mit.edu	37	2	160801441	160801442	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:160801441_160801442insT	uc002ube.1	-	28	4326_4327	c.4119_4120insA	c.(4117-4122)AAAGGCfs	p.K1373fs	PLA2R1_uc010zcp.1_Frame_Shift_Ins_p.K1371fs	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	1373_1374	Extracellular (Potential).|C-type lectin 8.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						CATATAAAGCCTTTTTTTTCTT	0.401													8	853	---	---	---	---					
SCN9A	6335	broad.mit.edu	37	2	167055992	167055992	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:167055992delT	uc010fpl.2	-	27	5465	c.5124delA	c.(5122-5124)AAAfs	p.K1708fs	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1719	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CAGGATGAACTTTTTTTGGGT	0.423													8	1471	---	---	---	---					
ANKRD44	91526	broad.mit.edu	37	2	197943383	197943384	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:197943383_197943384delTG	uc002uub.2	-	16	1860_1861	c.1693_1694delCA	c.(1693-1695)CATfs	p.H565fs	ANKRD44_uc002utz.3_Intron|ANKRD44_uc002uua.1_Intron|ANKRD44_uc010zgw.1_Frame_Shift_Del_p.H493fs	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			ATTTGGGGTATGTGTGTGTGTG	0.342													8	60	---	---	---	---					
CYP20A1	57404	broad.mit.edu	37	2	204150380	204150380	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:204150380delA	uc002uzv.3	+	9	1518	c.896delA	c.(895-897)CAAfs	p.Q299fs	CYP20A1_uc002uzx.3_Frame_Shift_Del_p.Q197fs|CYP20A1_uc010zif.1_Frame_Shift_Del_p.Q307fs|CYP20A1_uc002uzy.3_Frame_Shift_Del_p.Q197fs|CYP20A1_uc002uzw.3_RNA|CYP20A1_uc010ftw.2_Frame_Shift_Del_p.Q29fs	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,	299						integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						GAAGAAGTTCAAAAAAAATTA	0.348													7	349	---	---	---	---					
NCL	4691	broad.mit.edu	37	2	232319942	232319944	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:232319942_232319944delCCT	uc002vru.2	-	14	2232_2234	c.2091_2093delAGG	c.(2089-2094)GGAGGT>GGT	p.697_698GG>G		NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	697_698	Arg/Gly/Phe-rich.				angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		CTTGTGGTCACCTCCTCCTCCTC	0.498													9	476	---	---	---	---					
ALPP	250	broad.mit.edu	37	2	233243529	233243531	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:233243529_233243531delTGC	uc002vsq.2	+	1	182_184	c.17_19delTGC	c.(16-21)ATGCTG>ATG	p.L13del	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	13						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		GGGCCCTGCAtgctgctgctgct	0.542													15	321	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233620985	233620987	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:233620985_233620987delGAG	uc002vti.3	+	8	657_659	c.320_322delGAG	c.(319-324)CGAGGA>CGA	p.G111del	GIGYF2_uc010zmj.1_In_Frame_Del_p.G111del|GIGYF2_uc002vtg.2_In_Frame_Del_p.G111del|GIGYF2_uc002vtj.3_In_Frame_Del_p.G111del|GIGYF2_uc002vtk.3_In_Frame_Del_p.G111del|GIGYF2_uc002vth.3_In_Frame_Del_p.G111del|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	111	Poly-Gly.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		TTGACAGGACGAGGAGGAGGAGG	0.394													9	446	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233676006	233676008	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:233676006_233676008delCAG	uc002vti.3	+	19	2288_2290	c.1951_1953delCAG	c.(1951-1953)CAGdel	p.Q655del	GIGYF2_uc010zmj.1_In_Frame_Del_p.Q655del|GIGYF2_uc002vtg.2_In_Frame_Del_p.Q649del|GIGYF2_uc002vtj.3_In_Frame_Del_p.Q676del|GIGYF2_uc002vtk.3_In_Frame_Del_p.Q655del|GIGYF2_uc002vth.3_In_Frame_Del_p.Q649del|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_In_Frame_Del_p.Q486del|GIGYF2_uc002vtq.3_5'UTR	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	655	Gln-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		ACTGTCTTCCCAGCAGCAGCAGC	0.424													7	511	---	---	---	---					
GAL3ST2	64090	broad.mit.edu	37	2	242738494	242738496	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr2:242738494_242738496delTCC	uc002wcj.1	+	2	175_177	c.44_46delTCC	c.(43-48)ATCCTC>ATC	p.L20del		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	20	Helical; Signal-anchor for type II membrane protein; (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TTCCGGGTCATCCTCCTCCTCCT	0.631													29	644	---	---	---	---					
TMEM90B	79953	broad.mit.edu	37	20	24524183	24524185	+	In_Frame_Del	DEL	GGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:24524183_24524185delGGA	uc002wtw.1	+	2	1083_1085	c.450_452delGGA	c.(448-453)GTGGAG>GTG	p.E155del		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	155	Poly-Glu.|Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCTACGATGTGGAGGAGGAGGAG	0.547													12	1017	---	---	---	---					
PYGB	5834	broad.mit.edu	37	20	25255327	25255328	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:25255327_25255328insC	uc002wup.2	+	5	737_738	c.628_629insC	c.(628-630)ACCfs	p.T210fs		NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	210					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	CGTGGAGCACACCCCCGACGGC	0.634													7	1171	---	---	---	---					
PYGB	5834	broad.mit.edu	37	20	25274864	25274864	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:25274864delT	uc002wup.2	+	18	2357	c.2248delT	c.(2248-2250)TTTfs	p.F750fs		NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	750					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	CAGCAGTGGCTTTTTTTCTCC	0.562													7	490	---	---	---	---					
C20orf85	128602	broad.mit.edu	37	20	56735727	56735727	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:56735727delC	uc002xyv.2	+	4	301	c.263delC	c.(262-264)TCCfs	p.S88fs		NM_178456	NP_848551	Q9H1P6	CT085_HUMAN	hypothetical protein LOC128602	88										ovary(1)	1	all_epithelial(3;5.99e-14)|Lung NSC(12;0.000152)|all_lung(29;0.000518)|Melanoma(10;0.118)		BRCA - Breast invasive adenocarcinoma(13;5.53e-12)|Epithelial(14;7.42e-08)|all cancers(14;7.19e-07)			GTCTTTCCATCCCCCCCAGTC	0.582													12	272	---	---	---	---					
YTHDF1	54915	broad.mit.edu	37	20	61833650	61833652	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:61833650_61833652delCCT	uc002yeh.2	-	4	1934_1936	c.1640_1642delAGG	c.(1639-1644)GAGGTG>GTG	p.E547del	YTHDF1_uc011aaq.1_In_Frame_Del_p.E497del	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	547										ovary(2)	2						TTGCGCACCACCTCCTCCTCCTC	0.557													16	674	---	---	---	---					
YTHDF1	54915	broad.mit.edu	37	20	61834519	61834519	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:61834519delC	uc002yeh.2	-	4	1067	c.773delG	c.(772-774)GGTfs	p.G258fs	YTHDF1_uc011aaq.1_Frame_Shift_Del_p.G208fs	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	258	Gln/Pro-rich.									ovary(2)	2						GGGCAGCCCACCCCCCATGAC	0.582													8	1180	---	---	---	---					
RTEL1	51750	broad.mit.edu	37	20	62292822	62292824	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr20:62292822_62292824delGCT	uc002yfu.1	+	3	617_619	c.274_276delGCT	c.(274-276)GCTdel	p.A96del	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_In_Frame_Del_p.A96del|RTEL1_uc011abd.1_In_Frame_Del_p.A96del|RTEL1_uc002yfv.2_In_Frame_Del_p.A96del|RTEL1_uc011abe.1_5'UTR|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	96	Helicase ATP-binding.				DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			CTGGGGCAACGCTGCTGCTGCTG	0.645													8	207	---	---	---	---					
C21orf99	149992	broad.mit.edu	37	21	14439225	14439226	+	RNA	INS	-	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr21:14439225_14439226insA	uc002yja.3	+	10		c.2743_2744insA				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						TATATTAAATGAAAAATTAGGG	0.287													8	122	---	---	---	---					
PWP2	5822	broad.mit.edu	37	21	45535692	45535694	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr21:45535692_45535694delGAG	uc002zeb.2	+	7	817_819	c.727_729delGAG	c.(727-729)GAGdel	p.E247del		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	247	Poly-Glu.					cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		ggaggaggaagaggaggaggagg	0.527													7	238	---	---	---	---					
MED15	51586	broad.mit.edu	37	22	20918916	20918918	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:20918916_20918918delCAG	uc002zsp.2	+	6	711_713	c.631_633delCAG	c.(631-633)CAGdel	p.Q218del	MED15_uc002zsn.1_In_Frame_Del_p.Q137del|MED15_uc002zso.2_In_Frame_Del_p.Q147del|MED15_uc002zsq.2_In_Frame_Del_p.Q218del|MED15_uc010gso.2_In_Frame_Del_p.Q218del|MED15_uc002zsr.2_In_Frame_Del_p.Q192del|MED15_uc011ahs.1_In_Frame_Del_p.Q192del|MED15_uc011aht.1_In_Frame_Del_p.Q192del|MED15_uc002zss.2_In_Frame_Del_p.Q137del|MED15_uc011ahu.1_5'Flank	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	218	Poly-Gln.			Missing (in Ref. 4; CAG30423).	regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			gcagcagctccagcagcagcagc	0.187											OREG0026319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	128	---	---	---	---					
MYH9	4627	broad.mit.edu	37	22	36689419	36689421	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:36689419_36689421delCCT	uc003apg.2	-	30	4280_4282	c.4049_4051delAGG	c.(4048-4053)GAGGCC>GCC	p.E1350del		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1350	Potential.			E -> EE (in Ref. 7).	actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TTGTGCTTGGCCTCCTCCTCCTC	0.650			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				8	519	---	---	---	---					
SH3BP1	23616	broad.mit.edu	37	22	38039752	38039754	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:38039752_38039754delAGG	uc003ati.2	+	7	686_688	c.575_577delAGG	c.(574-579)AAGGAG>AAG	p.E197del	SH3BP1_uc003atg.1_RNA|SH3BP1_uc011anl.1_In_Frame_Del_p.E197del|SH3BP1_uc003ath.1_In_Frame_Del_p.E197del|SH3BP1_uc003atj.1_In_Frame_Del_p.E133del|SH3BP1_uc003atk.1_In_Frame_Del_p.E111del|uc003atl.1_RNA	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	197	BAR.				signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAGACGCTGAAGGAGGAGGAGGA	0.498											OREG0026546	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	521	---	---	---	---					
SREBF2	6721	broad.mit.edu	37	22	42262949	42262951	+	In_Frame_Del	DEL	GCA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:42262949_42262951delGCA	uc003bbi.2	+	2	372_374	c.203_205delGCA	c.(202-207)GGCAGC>GGC	p.S74del	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	74	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						ggcagcagtggcagcagcagcag	0.365													14	395	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610362	42610364	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:42610362_42610364delTGC	uc003bcj.1	-	1	1082_1084	c.948_950delGCA	c.(946-951)CAGCAA>CAA	p.316_317QQ>Q	TCF20_uc003bck.1_In_Frame_Del_p.316_317QQ>Q|TCF20_uc003bnt.2_In_Frame_Del_p.316_317QQ>Q	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	316_317	Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						ttgctgcggttgctgctgctgct	0.409													7	460	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610573	42610575	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr22:42610573_42610575delAGG	uc003bcj.1	-	1	871_873	c.737_739delCCT	c.(736-741)TCCTTC>TTC	p.S246del	TCF20_uc003bck.1_In_Frame_Del_p.S246del|TCF20_uc003bnt.2_In_Frame_Del_p.S246del	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	246	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GGTGAAGGGAaggaggaggagga	0.438													19	457	---	---	---	---					
CNTN6	27255	broad.mit.edu	37	3	1371501	1371501	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:1371501delA	uc003boz.2	+	11	1513	c.1246delA	c.(1246-1248)AAAfs	p.K416fs	CNTN6_uc011asj.1_Frame_Shift_Del_p.K344fs|CNTN6_uc003bpa.2_Frame_Shift_Del_p.K416fs	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	416	Ig-like C2-type 5.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AAGTCCAGTTAAAAAAAAGTC	0.393													7	439	---	---	---	---					
PRRT3	285368	broad.mit.edu	37	3	9991858	9991859	+	Splice_Site	INS	-	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:9991858_9991859insA	uc003bul.2	-	2	74	c.-56_splice	c.e2-1		CIDEC_uc003bto.2_Intron|PRRT3_uc003buk.2_Splice_Site|PRRT3_uc003bum.2_Splice_Site	NM_207351	NP_997234	Q5FWE3	PRRT3_HUMAN	proline-rich transmembrane protein 3 precursor							integral to membrane					0						TGGATGAGCCTAAAAAAAAAAC	0.574													8	41	---	---	---	---					
CLASP2	23122	broad.mit.edu	37	3	33602361	33602361	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:33602361delT	uc003cfu.2	-	27	3223	c.2869delA	c.(2869-2871)ATGfs	p.M957fs	CLASP2_uc003cfs.2_Frame_Shift_Del_p.M164fs|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Frame_Shift_Del_p.M557fs	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	966										ovary(3)|central_nervous_system(1)	4						TCAGCACCCATTTTTTTTAGT	0.343													9	604	---	---	---	---					
PDCD6IP	10015	broad.mit.edu	37	3	33866811	33866811	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:33866811delT	uc003cfx.2	+	5	750	c.595delT	c.(595-597)TTTfs	p.F199fs	PDCD6IP_uc011axv.1_Frame_Shift_Del_p.F199fs|PDCD6IP_uc003cfy.2_Frame_Shift_Del_p.F199fs	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	programmed cell death 6 interacting protein	199	Interaction with EIAV p9.|Interaction with CHMP4A, CHMP4B and CHMP4C.|BRO1.			F->D: Abolishes interaction with CHMP4B and abolishes rescue of PTAP-type L domain-deficient HIV-1 p6.	apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			ovary(1)|skin(1)	2						TCAAGAAGTATTTTTTTTAAA	0.368													8	434	---	---	---	---					
HHATL	57467	broad.mit.edu	37	3	42740315	42740317	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:42740315_42740317delAGC	uc003clw.2	-	6	513_515	c.366_368delGCT	c.(364-369)CTGCTT>CTT	p.122_123LL>L	HHATL_uc003clx.2_In_Frame_Del_p.122_123LL>L	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	122_123					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		ACAGTGACCAAGCAGCAGCAGCA	0.621													10	580	---	---	---	---					
USP4	7375	broad.mit.edu	37	3	49321969	49321971	+	In_Frame_Del	DEL	TCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:49321969_49321971delTCT	uc003cwq.2	-	18	2397_2399	c.2318_2320delAGA	c.(2317-2322)AAGACC>ACC	p.K773del	USP4_uc003cwo.2_In_Frame_Del_p.K485del|USP4_uc003cwp.2_In_Frame_Del_p.K503del|USP4_uc003cwr.2_In_Frame_Del_p.K726del	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	773					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		GCCACTGTGGTCTTCTTCTTCTT	0.532													12	625	---	---	---	---					
VGLL3	389136	broad.mit.edu	37	3	87027857	87027859	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:87027857_87027859delCTC	uc003dqn.2	-	2	584_586	c.220_222delGAG	c.(220-222)GAGdel	p.E74del		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	74					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GCTGGtctttctcctcctcctcc	0.394													8	227	---	---	---	---					
DIRC2	84925	broad.mit.edu	37	3	122591321	122591321	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:122591321delT	uc003efw.3	+	8	1337	c.1198delT	c.(1198-1200)TTTfs	p.F400fs	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Frame_Shift_Del_p.F238fs	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	400	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		CGTGCCTATATTTTTTGAGCT	0.363													7	907	---	---	---	---					
LOC100125556	100125556	broad.mit.edu	37	3	125647339	125647339	+	RNA	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:125647339delC	uc003eif.3	+	5		c.513delC			LOC100125556_uc003eid.3_RNA|LOC100125556_uc003eie.3_RNA	NR_024251				Homo sapiens family with sequence similarity 86, member A pseudogene, mRNA (cDNA clone IMAGE:4425123).												0						TGTTTCCAGGCCAGGCCAGGA	0.557													8	571	---	---	---	---					
COPB2	9276	broad.mit.edu	37	3	139094364	139094365	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:139094364_139094365insT	uc003etf.3	-	6	726_727	c.596_597insA	c.(595-597)AAGfs	p.K199fs	COPB2_uc011bmv.1_Frame_Shift_Ins_p.K170fs|COPB2_uc010hui.2_Frame_Shift_Ins_p.K170fs|COPB2_uc011bmw.1_Frame_Shift_Ins_p.K199fs	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	199	WD 5.				COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						TGAGGTATGGCTTGTCCCCACC	0.421													8	595	---	---	---	---					
WWTR1	25937	broad.mit.edu	37	3	149260194	149260196	+	In_Frame_Del	DEL	CTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:149260194_149260196delCTG	uc003exe.2	-	3	713_715	c.697_699delCAG	c.(697-699)CAGdel	p.Q233del	WWTR1_uc003exf.2_In_Frame_Del_p.Q233del|WWTR1_uc011bns.1_In_Frame_Del_p.Q233del|WWTR1_uc003exh.2_In_Frame_Del_p.Q233del	NM_015472	NP_056287	Q9GZV5	WWTR1_HUMAN	WW domain containing transcription regulator 1	233	Potential.|Gln-rich.				hippo signaling cascade|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of protein kinase activity|negative regulation of protein phosphorylation|positive regulation of cell proliferation|positive regulation of epithelial to mesenchymal transition|regulation of SMAD protein import into nucleus|stem cell division|transcription, DNA-dependent	cytoplasm	transcription coactivator activity			breast(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GCCGCAGTTTCTGCTGCTGCTGC	0.581													7	334	---	---	---	---					
MED12L	116931	broad.mit.edu	37	3	151148114	151148116	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:151148114_151148116delCAG	uc003eyp.2	+	42	6369_6371	c.6331_6333delCAG	c.(6331-6333)CAGdel	p.Q2115del	MED12L_uc011bnz.1_In_Frame_Del_p.Q1779del	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	2115	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCAGCAGACCCAGCAGCAGCAGC	0.527													31	511	---	---	---	---					
TRIM59	286827	broad.mit.edu	37	3	160156367	160156368	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:160156367_160156368insT	uc003fdm.2	-	3	799_800	c.604_605insA	c.(604-606)AGTfs	p.S202fs	IFT80_uc003fda.2_RNA	NM_173084	NP_775107	Q8IWR1	TRI59_HUMAN	tripartite motif-containing 59	202	Potential.					integral to membrane|intracellular	zinc ion binding				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			CGTTAGGAAACTTTTTTTTTTC	0.342													18	219	---	---	---	---					
BCHE	590	broad.mit.edu	37	3	165548196	165548196	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:165548196delT	uc003fem.3	-	2	786	c.626delA	c.(625-627)AATfs	p.N209fs	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	209					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding	p.N209Y(1)		ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	GGCTGCTATATTTTTTTGAAC	0.458													7	557	---	---	---	---					
GOLIM4	27333	broad.mit.edu	37	3	167747642	167747644	+	In_Frame_Del	DEL	CTG	-	-	rs61743912	byFrequency	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:167747642_167747644delCTG	uc003ffe.2	-	10	1701_1703	c.1357_1359delCAG	c.(1357-1359)CAGdel	p.Q453del	GOLIM4_uc011bpe.1_In_Frame_Del_p.Q453del|GOLIM4_uc011bpf.1_In_Frame_Del_p.Q425del|GOLIM4_uc011bpg.1_In_Frame_Del_p.Q425del	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	453	Glu-rich.|Gln-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						CTCTTGCCACctgctgctgctgc	0.374													14	251	---	---	---	---					
TNK2	10188	broad.mit.edu	37	3	195595229	195595229	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr3:195595229delG	uc003fvu.1	-	12	2438	c.1895delC	c.(1894-1896)CCGfs	p.P632fs	TNK2_uc003fvq.1_Frame_Shift_Del_p.P39fs|TNK2_uc003fvr.1_Frame_Shift_Del_p.P157fs|TNK2_uc003fvs.1_Frame_Shift_Del_p.P664fs|TNK2_uc003fvt.1_Frame_Shift_Del_p.P710fs|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_3'UTR	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	632	Required for interaction with SRC.|Required for interaction with NEDD4 (By similarity).|Pro-rich.			Missing (in Ref. 4; AAH08884).	positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	ATAGGCGGGCGGGGGGGGCAG	0.726													13	453	---	---	---	---					
PROM1	8842	broad.mit.edu	37	4	15995680	15995680	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:15995680delT	uc003goo.2	-	15	1909	c.1697delA	c.(1696-1698)AATfs	p.N566fs	PROM1_uc003gor.2_Frame_Shift_Del_p.N566fs|PROM1_uc003gos.2_Frame_Shift_Del_p.N557fs|PROM1_uc003got.2_Frame_Shift_Del_p.N566fs|PROM1_uc003gou.2_Frame_Shift_Del_p.N557fs|PROM1_uc003gop.2_Frame_Shift_Del_p.N557fs|PROM1_uc003goq.3_Frame_Shift_Del_p.N557fs	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	566	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						AGTGCCTCTATTTTTTTTGCA	0.428													19	538	---	---	---	---					
KLF3	51274	broad.mit.edu	37	4	38691476	38691476	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:38691476delC	uc003gth.3	+	4	1003	c.671delC	c.(670-672)TCCfs	p.S224fs	KLF3_uc003gtg.2_Frame_Shift_Del_p.S224fs	NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	224	Pro-rich.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						AACTCAGTGTCCCCCCCGCAA	0.423													9	881	---	---	---	---					
YTHDC1	91746	broad.mit.edu	37	4	69202891	69202893	+	In_Frame_Del	DEL	TCC	-	-	rs141105019		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:69202891_69202893delTCC	uc003hdx.2	-	4	1088_1090	c.735_737delGGA	c.(733-738)GAGGAA>GAA	p.245_246EE>E	YTHDC1_uc003hdy.2_In_Frame_Del_p.245_246EE>E	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	245_246	Glu-rich.									upper_aerodigestive_tract(1)|ovary(1)	2						ttcttcttcttcctcctcctcct	0.202													9	243	---	---	---	---					
UTP3	57050	broad.mit.edu	37	4	71554620	71554622	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:71554620_71554622delGAG	uc003hfo.2	+	1	425_427	c.226_228delGAG	c.(226-228)GAGdel	p.E81del		NM_020368	NP_065101	Q9NQZ2	SAS10_HUMAN	UTP3, small subunit processome component	81	Glu-rich.				brain development|chromatin modification|gene silencing	nucleolus					0			Lung(101;0.235)			ggaggatggcgaggaggaggagg	0.291													11	237	---	---	---	---					
ANKRD17	26057	broad.mit.edu	37	4	73951008	73951008	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:73951008delA	uc003hgp.2	-	30	7234	c.7117delT	c.(7117-7119)TCCfs	p.S2373fs	ANKRD17_uc003hgo.2_Frame_Shift_Del_p.S2260fs|ANKRD17_uc003hgq.2_Frame_Shift_Del_p.S2122fs|ANKRD17_uc003hgr.2_Frame_Shift_Del_p.S2372fs	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2373					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CTAAGCGGGGAAAAATGTTGT	0.438													7	1581	---	---	---	---					
CDKL2	8999	broad.mit.edu	37	4	76539579	76539580	+	Frame_Shift_Ins	INS	-	T	T			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:76539579_76539580insT	uc003hiq.2	-	3	747_748	c.222_223insA	c.(220-225)AAACGAfs	p.K74fs	CDKL2_uc011cbp.1_Frame_Shift_Ins_p.K74fs|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	74_75	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			AGGTACCATCGTTTTTTTTTCT	0.322													16	289	---	---	---	---					
SEC31A	22872	broad.mit.edu	37	4	83785675	83785677	+	In_Frame_Del	DEL	TGC	-	-	rs146843621		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:83785675_83785677delTGC	uc003hnf.2	-	11	1436_1438	c.1272_1274delGCA	c.(1270-1275)CAGCAC>CAC	p.Q424del	SEC31A_uc003hne.2_In_Frame_Del_p.Q196del|SEC31A_uc011ccl.1_In_Frame_Del_p.Q424del|SEC31A_uc003hnl.2_In_Frame_Del_p.Q424del|SEC31A_uc003hng.2_In_Frame_Del_p.Q424del|SEC31A_uc003hnh.2_In_Frame_Del_p.Q424del|SEC31A_uc003hni.2_In_Frame_Del_p.Q424del|SEC31A_uc003hnj.2_In_Frame_Del_p.Q424del|SEC31A_uc011ccm.1_In_Frame_Del_p.Q419del|SEC31A_uc011ccn.1_In_Frame_Del_p.Q424del|SEC31A_uc003hnk.2_In_Frame_Del_p.Q424del|SEC31A_uc003hnm.2_In_Frame_Del_p.Q424del|SEC31A_uc003hnn.1_In_Frame_Del_p.Q424del|SEC31A_uc003hno.2_In_Frame_Del_p.Q424del	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	424	Interaction with SEC13.				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				GAACACATGGTGCTGCTGCTGCT	0.448													8	434	---	---	---	---					
WDFY3	23001	broad.mit.edu	37	4	85611708	85611709	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:85611708_85611709delCA	uc003hpd.2	-	61	9721_9722	c.9313_9314delTG	c.(9313-9315)TGGfs	p.W3105fs		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	3105	WD 1.					cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GCCCATCTCCCACACACACACA	0.510													14	573	---	---	---	---					
MMRN1	22915	broad.mit.edu	37	4	90844391	90844393	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:90844391_90844393delAGC	uc003hst.2	+	4	994_996	c.923_925delAGC	c.(922-927)GAGCAG>GAG	p.Q313del	MMRN1_uc010iku.2_In_Frame_Del_p.Q279del|MMRN1_uc011cds.1_In_Frame_Del_p.Q55del	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	313	Poly-Gln.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GGAGTAGCTGAGCAGCAGCAGCA	0.448													14	1744	---	---	---	---					
INTU	27152	broad.mit.edu	37	4	128564917	128564917	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:128564917delA	uc003ifk.1	+	2	458	c.388delA	c.(388-390)AAAfs	p.K130fs	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	130										ovary(1)	1						GCGCTGCAATAAAAAAAATAG	0.358													7	266	---	---	---	---					
OTUD4	54726	broad.mit.edu	37	4	146059009	146059010	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:146059009_146059010delTC	uc003ika.3	-	21	2860_2861	c.2722_2723delGA	c.(2722-2724)GAAfs	p.E908fs	OTUD4_uc003ijz.3_Frame_Shift_Del_p.E907fs	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	972							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AGGCACAGTTTCTCTCTCTCTG	0.455													8	947	---	---	---	---					
OTUD4	54726	broad.mit.edu	37	4	146077123	146077125	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:146077123_146077125delCAG	uc003ika.3	-	8	596_598	c.458_460delCTG	c.(457-462)GCTGAT>GAT	p.A153del	OTUD4_uc003ijz.3_In_Frame_Del_p.A153del	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	218							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					CCATTCACATCAGCAGCAGCAGC	0.340													11	411	---	---	---	---					
DDX60	55601	broad.mit.edu	37	4	169182016	169182016	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:169182016delA	uc003irp.2	-	25	3690	c.3398delT	c.(3397-3399)TTAfs	p.L1133fs		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1133							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AATAACTTACAAAAAAAATAG	0.254													7	332	---	---	---	---					
HMGB2	3148	broad.mit.edu	37	4	174253277	174253279	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr4:174253277_174253279delTCC	uc011ckc.1	-	4	702_704	c.582_584delGGA	c.(580-585)GAGGAA>GAA	p.194_195EE>E	HMGB2_uc003ita.3_In_Frame_Del_p.194_195EE>E|HMGB2_uc003itb.2_In_Frame_Del_p.194_195EE>E|HMGB2_uc003itc.2_3'UTR	NM_001130689	NP_001124161	P26583	HMGB2_HUMAN	high-mobility group box 2	194_195	Asp/Glu-rich (acidic).				base-excision repair, DNA ligation|cell chemotaxis|cellular response to lipopolysaccharide|DNA fragmentation involved in apoptotic nuclear change|DNA topological change|negative regulation of transcription, DNA-dependent|nucleosome assembly|phosphatidylinositol-mediated signaling|positive regulation of DNA binding|positive regulation of endothelial cell proliferation|positive regulation of erythrocyte differentiation|positive regulation of megakaryocyte differentiation|positive regulation of nuclease activity|positive regulation of transcription from RNA polymerase II promoter|V(D)J recombination	condensed chromosome|extracellular space|nucleolus|nucleoplasm|perinuclear region of cytoplasm|protein complex	chemoattractant activity|damaged DNA binding|DNA bending activity|double-stranded DNA binding|RAGE receptor binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding|transcription regulatory region DNA binding				0		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;9.58e-18)|Epithelial(43;3.75e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.24e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		atcttcttcttcctcctcctcct	0.286													9	398	---	---	---	---					
IRX4	50805	broad.mit.edu	37	5	1879669	1879671	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:1879669_1879671delCCT	uc003jcz.2	-	4	802_804	c.683_685delAGG	c.(682-687)GAGGGG>GGG	p.E228del	IRX4_uc011cmf.1_In_Frame_Del_p.E89del	NM_016358	NP_057442	P78413	IRX4_HUMAN	iroquois homeobox 4	228	Poly-Glu.				heart development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(108;0.242)		tcctcgcccccctcctcctcctc	0.507													11	160	---	---	---	---					
PAM	5066	broad.mit.edu	37	5	102296908	102296910	+	In_Frame_Del	DEL	AGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:102296908_102296910delAGA	uc003knw.2	+	13	1510_1512	c.1137_1139delAGA	c.(1135-1140)CGAGAA>CGA	p.E383del	PAM_uc003kns.2_In_Frame_Del_p.E383del|PAM_uc003knt.2_In_Frame_Del_p.E383del|PAM_uc003knu.2_In_Frame_Del_p.E383del|PAM_uc003knv.2_In_Frame_Del_p.E383del|PAM_uc011cuz.1_In_Frame_Del_p.E286del|PAM_uc003knx.1_In_Frame_Del_p.E75del	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	383	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	AGCCAAAACGAGAAGAAGAAGAA	0.325													12	596	---	---	---	---					
AP3S1	1176	broad.mit.edu	37	5	115202418	115202421	+	Frame_Shift_Del	DEL	AAGA	-	-	rs80118146		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:115202418_115202421delAAGA	uc003krl.2	+	2	237_240	c.121_124delAAGA	c.(121-126)AAGAGAfs	p.K41fs	AP3S1_uc003krk.2_Frame_Shift_Del_p.K19fs|AP3S1_uc003krm.2_Frame_Shift_Del_p.K41fs	NM_001284	NP_001275	Q92572	AP3S1_HUMAN	adaptor-related protein complex 3, sigma 1	41_42					insulin receptor signaling pathway|intracellular protein transport|vesicle-mediated transport	AP-type membrane coat adaptor complex|cytoplasmic vesicle membrane|Golgi apparatus|transport vesicle	protein binding|protein transporter activity				0		all_cancers(142;0.00377)|all_epithelial(76;0.000129)|Prostate(80;0.0132)|Ovarian(225;0.0776)|Lung NSC(810;0.245)		OV - Ovarian serous cystadenocarcinoma(64;1.08e-07)|Epithelial(69;1.11e-06)|all cancers(49;5.2e-05)		TTTGGTATCTAAGAGAGATGAAAA	0.304													12	348	---	---	---	---					
ZNF608	57507	broad.mit.edu	37	5	124079813	124079815	+	In_Frame_Del	DEL	CTC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:124079813_124079815delCTC	uc003ktq.1	-	1	991_993	c.868_870delGAG	c.(868-870)GAGdel	p.E290del	ZNF608_uc003ktr.1_RNA|ZNF608_uc003kts.1_In_Frame_Del_p.E290del|ZNF608_uc003ktt.1_In_Frame_Del_p.E290del	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	290	Potential.					intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		GCCTGTGGCTCTCCTCCTCCTCC	0.522													7	1029	---	---	---	---					
MEGF10	84466	broad.mit.edu	37	5	126792989	126792991	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:126792989_126792991delCAG	uc003kuh.3	+	26	3764_3766	c.3402_3404delCAG	c.(3400-3405)AACAGC>AAC	p.S1139del	MEGF10_uc003kui.3_In_Frame_Del_p.S1139del	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	1139	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.|Ser-rich.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		gcagcagcaacagcagcagcagc	0.433													11	326	---	---	---	---					
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139905676	139905676	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:139905676delA	uc003lfs.1	+	26	4712	c.4588delA	c.(4588-4590)AAAfs	p.K1530fs	ANKHD1_uc003lfr.2_Frame_Shift_Del_p.K1530fs|ANKHD1_uc003lfu.1_Frame_Shift_Del_p.K1010fs|ANKHD1-EIF4EBP3_uc011czh.1_Frame_Shift_Del_p.K269fs|ANKHD1_uc003lfw.2_Frame_Shift_Del_p.K168fs|ANKHD1_uc010jfl.2_5'UTR|ANKHD1-EIF4EBP3_uc003lfx.1_5'Flank	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1530						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTGTTTGGGAAAAAAAGGGC	0.423													9	838	---	---	---	---					
TIMD4	91937	broad.mit.edu	37	5	156378745	156378747	+	In_Frame_Del	DEL	TTG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:156378745_156378747delTTG	uc003lwh.2	-	3	512_514	c.455_457delCAA	c.(454-459)ACAAGC>AGC	p.T152del	TIMD4_uc010jii.2_In_Frame_Del_p.T152del	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	152	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGGTGGGGCTTGTTGTTGTTGT	0.537													7	1889	---	---	---	---					
HAVCR2	84868	broad.mit.edu	37	5	156535948	156535950	+	In_Frame_Del	DEL	AGC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:156535948_156535950delAGC	uc003lwk.1	-	1	189_191	c.45_47delGCT	c.(43-48)CTGCTA>CTA	p.15_16LL>L	HAVCR2_uc003lwl.2_In_Frame_Del_p.15_16LL>L	NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	15_16						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGTAAGTAGTAGCAGCAGCAGCA	0.291													9	369	---	---	---	---					
CANX	821	broad.mit.edu	37	5	179149920	179149920	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr5:179149920delT	uc003mkk.2	+	11	1475	c.1298delT	c.(1297-1299)ATTfs	p.I433fs	CANX_uc011dgp.1_Frame_Shift_Del_p.I468fs|CANX_uc003mkl.2_Frame_Shift_Del_p.I433fs|CANX_uc011dgq.1_Frame_Shift_Del_p.I325fs	NM_001746	NP_001737	P27824	CALX_HUMAN	calnexin precursor	433	Lumenal (Potential).			SDI -> LTF (in Ref. 9; AAA35696).	post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein secretion	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane|melanosome	calcium ion binding|sugar binding|unfolded protein binding				0	all_cancers(89;0.000129)|all_epithelial(37;5.59e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0413)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACCTCTGACATTTTTTTTGAC	0.423													9	496	---	---	---	---					
DEK	7913	broad.mit.edu	37	6	18264079	18264081	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:18264079_18264081delTCC	uc003ncr.1	-	2	331_333	c.138_140delGGA	c.(136-141)GAGGAA>GAA	p.46_47EE>E	DEK_uc011djf.1_In_Frame_Del_p.46_47EE>E|DEK_uc011djg.1_RNA	NM_003472	NP_003463	P35659	DEK_HUMAN	DEK oncogene isoform 1	46_47	Asp/Glu-rich (highly acidic).				chromatin modification|regulation of transcription from RNA polymerase II promoter|signal transduction|transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|histone binding			kidney(1)	1	Ovarian(93;0.00769)|Breast(50;0.0495)	all_hematologic(90;0.053)	OV - Ovarian serous cystadenocarcinoma(7;0.00291)|all cancers(50;0.031)|Epithelial(50;0.0332)			CCCACCTTTTtcctcctcctcct	0.365			T	NUP214	AML								10	321	---	---	---	---					
BTN2A2	10385	broad.mit.edu	37	6	26384091	26384093	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:26384091_26384093delCCT	uc003nhq.2	+	2	128_130	c.42_44delCCT	c.(40-45)TCCCTC>TCC	p.L24del	BTN2A2_uc011dkf.1_In_Frame_Del_p.L24del|BTN2A2_uc011dkg.1_In_Frame_Del_p.L24del|BTN2A2_uc003nhr.2_In_Frame_Del_p.L24del|BTN2A2_uc011dkh.1_In_Frame_Del_p.L24del|BTN2A2_uc003nhs.2_In_Frame_Del_p.L24del|BTN2A2_uc003nht.2_In_Frame_Del_p.L24del	NM_006995	NP_008926	Q8WVV5	BT2A2_HUMAN	butyrophilin, subfamily 2, member A2 isoform a	24					negative regulation of activated T cell proliferation|negative regulation of cellular metabolic process|negative regulation of cytokine secretion	integral to membrane					0						TGCCAGCCTCcctcctcctcctc	0.483													15	605	---	---	---	---					
HLA-J	3137	broad.mit.edu	37	6	29977389	29977393	+	Frame_Shift_Del	DEL	CTTCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:29977389_29977393delCTTCT	uc003rtl.3	+	5	770_774	c.408_412delCTTCT	c.(406-414)GACTTCTCTfs	p.D136fs	HLA-G_uc011dmb.1_3'UTR|NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_RNA|HLA-J_uc003nov.3_RNA					Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).												0						AGAACCCTGACTTCTCTTTCTGCAA	0.488													10	138	---	---	---	---					
TRIM26	7726	broad.mit.edu	37	6	30157254	30157254	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:30157254delT	uc003npr.2	-	7	1054	c.845delA	c.(844-846)AAGfs	p.K282fs	TRIM26_uc003nps.2_Frame_Shift_Del_p.K282fs|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Frame_Shift_Del_p.K282fs	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	282							DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TTCTCCGGTCTTTTTTTTAAC	0.483													12	534	---	---	---	---					
PPP1R10	5514	broad.mit.edu	37	6	30570264	30570266	+	In_Frame_Del	DEL	GGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:30570264_30570266delGGA	uc003nqn.1	-	19	2712_2714	c.2160_2162delTCC	c.(2158-2163)CCTCCA>CCA	p.720_721PP>P	PPP1R10_uc010jsc.1_In_Frame_Del_p.374_375PP>P	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	720_721	Gly-rich.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GCCTCGGAATggaggaggaggag	0.601													8	288	---	---	---	---					
PPP1R10	5514	broad.mit.edu	37	6	30572795	30572795	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:30572795delT	uc003nqn.1	-	11	1482	c.930delA	c.(928-930)AAAfs	p.K310fs	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	310	Interaction with TOX4 (By similarity).|Poly-Lys.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GTGACAGTACTTTTTTTTTCT	0.448													10	272	---	---	---	---					
SYNGAP1	8831	broad.mit.edu	37	6	33411201	33411203	+	In_Frame_Del	DEL	CAC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:33411201_33411203delCAC	uc011dri.1	+	15	3067_3069	c.2872_2874delCAC	c.(2872-2874)CACdel	p.H966del	SYNGAP1_uc010juy.2_In_Frame_Del_p.H937del|SYNGAP1_uc010juz.2_In_Frame_Del_p.H678del	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	966					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						TTCCTCccatcaccaccaccacc	0.547													12	745	---	---	---	---					
TULP1	7287	broad.mit.edu	37	6	35478775	35478777	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:35478775_35478777delTCC	uc003okv.3	-	5	372_374	c.360_362delGGA	c.(358-363)GAGGAA>GAA	p.120_121EE>E	TULP1_uc003okw.3_In_Frame_Del_p.67_68EE>E	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	120_121	Poly-Glu.		Missing (in RP14).		dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						gtcctcctcttcctcctcctcct	0.389													7	521	---	---	---	---					
TREML2	79865	broad.mit.edu	37	6	41168714	41168716	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:41168714_41168716delCAG	uc010jxm.1	-	1	210_212	c.31_33delCTG	c.(31-33)CTGdel	p.L11del		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	11					T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCTGTGGCCACAGCAGCAGCAGC	0.631													23	219	---	---	---	---					
UBR2	23304	broad.mit.edu	37	6	42611951	42611951	+	Splice_Site	DEL	G	-	-	rs112519289		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:42611951delG	uc011dur.1	+	19	2098	c.2098_splice	c.e19-1	p.T700_splice	UBR2_uc011dus.1_Splice_Site_p.T345_splice|UBR2_uc010jxv.1_Splice_Site_p.T204_splice|UBR2_uc003osh.2_Splice_Site	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin						cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			AAAAAAAAAAGACAGGTGTCT	0.373													7	386	---	---	---	---					
SENP6	26054	broad.mit.edu	37	6	76405603	76405604	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:76405603_76405604delAG	uc003pid.3	+	17	2778_2779	c.2159_2160delAG	c.(2158-2160)CAGfs	p.Q720fs	SENP6_uc003pie.3_Frame_Shift_Del_p.Q713fs|SENP6_uc010kbf.2_RNA	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	SUMO1/sentrin specific peptidase 6 isoform 1	720	Protease.				proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|urinary_tract(1)|ovary(1)|lung(1)|skin(1)	6		all_hematologic(105;0.189)				CGCCTTAATCAGAGAGAGAGGA	0.317													7	577	---	---	---	---					
TTK	7272	broad.mit.edu	37	6	80751896	80751897	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:80751896_80751897insA	uc003pjc.2	+	22	2625_2626	c.2551_2552insA	c.(2551-2553)GAAfs	p.E851fs	TTK_uc003pjb.3_Frame_Shift_Ins_p.E850fs	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	851					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R838fs*4(3)		ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		CAAGACTTTTGAAAAAAAAAGG	0.302													10	449	---	---	---	---					
GABRR2	2570	broad.mit.edu	37	6	89975427	89975429	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:89975427_89975429delAAG	uc003pnb.2	-	7	875_877	c.867_869delCTT	c.(865-870)TTCTTG>TTG	p.F289del	GABRR2_uc011dzx.1_In_Frame_Del_p.F165del	NM_002043	NP_002034	P28476	GBRR2_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 2	289	Helical; (Potential).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0		all_cancers(76;1.67e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.77e-07)|all_epithelial(107;2.51e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0158)		TGTTTGGAGCAAGAAGAAGAAGA	0.517													8	420	---	---	---	---					
MAP3K7	6885	broad.mit.edu	37	6	91296568	91296570	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:91296568_91296570delGAG	uc003pnz.1	-	1	195_197	c.33_35delCTC	c.(31-36)TCCTCG>TCG	p.11_12SS>S	MAP3K7_uc003poa.1_In_Frame_Del_p.11_12SS>S|MAP3K7_uc003pob.1_In_Frame_Del_p.11_12SS>S|MAP3K7_uc003poc.1_In_Frame_Del_p.11_12SS>S	NM_145331	NP_663304	O43318	M3K7_HUMAN	mitogen-activated protein kinase kinase kinase 7	11_12	Poly-Ser.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|histone H3 acetylation|I-kappaB phosphorylation|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytosol|endosome membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)	6		all_cancers(76;6.4e-08)|Acute lymphoblastic leukemia(125;1.43e-09)|Prostate(29;9.32e-09)|all_hematologic(105;3.69e-06)|all_epithelial(107;0.000187)|Ovarian(999;0.0164)		OV - Ovarian serous cystadenocarcinoma(136;2.05e-11)|all cancers(137;3.25e-11)|GBM - Glioblastoma multiforme(226;0.0416)|BRCA - Breast invasive adenocarcinoma(108;0.0429)		GGCCGAAGACGAGGAGGAGGAGG	0.655													12	213	---	---	---	---					
IFNGR1	3459	broad.mit.edu	37	6	137519505	137519506	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:137519505_137519506delCT	uc003qho.2	-	7	1235_1236	c.1132_1133delAG	c.(1132-1134)AGTfs	p.S378fs	IFNGR1_uc011edm.1_Frame_Shift_Del_p.S350fs	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	378	Cytoplasmic (Potential).				regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	AGGTGAAGAACTCTCTCTCTCT	0.431													10	627	---	---	---	---					
AIG1	51390	broad.mit.edu	37	6	143457987	143457987	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:143457987delT	uc003qjh.2	+	2	197	c.157delT	c.(157-159)TTTfs	p.F53fs	AIG1_uc003qjf.2_Frame_Shift_Del_p.F43fs|AIG1_uc003qji.2_Intron|AIG1_uc011edw.1_Frame_Shift_Del_p.F53fs|AIG1_uc003qjg.2_Frame_Shift_Del_p.F53fs	NM_016108	NP_057192	Q9NVV5	AIG1_HUMAN	androgen-induced 1	53	Helical; (Potential).					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(155;2.34e-05)|GBM - Glioblastoma multiforme(68;0.0246)		CCAGGCTGTCTTTTTTGGCAT	0.507													8	1177	---	---	---	---					
PHACTR2	9749	broad.mit.edu	37	6	144086414	144086414	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:144086414delA	uc003qjq.3	+	6	808	c.678delA	c.(676-678)TCAfs	p.S226fs	PHACTR2_uc010khh.2_Frame_Shift_Del_p.S146fs|PHACTR2_uc010khi.2_Frame_Shift_Del_p.S237fs|PHACTR2_uc003qjr.3_Frame_Shift_Del_p.S157fs	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3	226							actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		CCTCTCATTCAAAAAAAACAA	0.398													13	587	---	---	---	---					
GRM1	2911	broad.mit.edu	37	6	146755399	146755401	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:146755399_146755401delCAG	uc010khw.1	+	9	3522_3524	c.3052_3054delCAG	c.(3052-3054)CAGdel	p.Q1022del	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1022	Gln/Pro-rich.|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCCTCCTCTCCAGCAGCAGCAGC	0.660													8	1002	---	---	---	---					
SYNE1	23345	broad.mit.edu	37	6	152719836	152719836	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:152719836delA	uc010kiw.2	-	49	7870	c.7268delT	c.(7267-7269)TTGfs	p.L2423fs	SYNE1_uc003qot.3_Frame_Shift_Del_p.L2430fs|SYNE1_uc003qou.3_Frame_Shift_Del_p.L2423fs|SYNE1_uc010kjb.1_Frame_Shift_Del_p.L2406fs	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2423	Spectrin 4.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTTTGCTCCCAAAAACCATTC	0.378										HNSCC(10;0.0054)			8	799	---	---	---	---					
MAP3K4	4216	broad.mit.edu	37	6	161469776	161469776	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr6:161469776delA	uc003qtn.2	+	3	614	c.472delA	c.(472-474)AAAfs	p.K158fs	MAP3K4_uc010kkc.1_Frame_Shift_Del_p.K158fs|MAP3K4_uc003qto.2_Frame_Shift_Del_p.K158fs|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_5'UTR	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	158					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		GCGTGATCGTAAAAAAAATGT	0.403													7	562	---	---	---	---					
PHF14	9678	broad.mit.edu	37	7	11075380	11075381	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:11075380_11075381delAG	uc003sry.1	+	8	2004_2005	c.1569_1570delAG	c.(1567-1572)CAAGAGfs	p.Q523fs	PHF14_uc011jxi.1_Frame_Shift_Del_p.Q238fs|PHF14_uc003srz.2_Frame_Shift_Del_p.Q523fs|PHF14_uc011jxj.1_Frame_Shift_Del_p.Q238fs	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	523_524							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		TGTCTTTGCAAGAGAGAGAGAA	0.376													7	999	---	---	---	---					
ABCB4	5244	broad.mit.edu	37	7	87074281	87074282	+	Frame_Shift_Ins	INS	-	A	A			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:87074281_87074282insA	uc003uiv.1	-	10	1091_1092	c.1015_1016insT	c.(1015-1017)TCAfs	p.S339fs	ABCB4_uc003uiw.1_Frame_Shift_Ins_p.S339fs|ABCB4_uc003uix.1_Frame_Shift_Ins_p.S339fs	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	339	Helical; (By similarity).|ABC transmembrane type-1 1.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					AATTAGGATTGAAAAAAAAACC	0.347													9	166	---	---	---	---					
AKAP9	10142	broad.mit.edu	37	7	91671392	91671393	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:91671392_91671393delAG	uc003ulg.2	+	19	5175_5176	c.4950_4951delAG	c.(4948-4953)TCAGAGfs	p.S1650fs	AKAP9_uc003ulf.2_Frame_Shift_Del_p.S1650fs|AKAP9_uc003uli.2_Frame_Shift_Del_p.S1275fs	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1662_1663					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			ACCTGGTTTCAGAGAGAGAGAG	0.411			T	BRAF	papillary thyroid								10	250	---	---	---	---					
CYP51A1	1595	broad.mit.edu	37	7	91752494	91752494	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:91752494delT	uc003ulm.3	-	7	1188	c.1026delA	c.(1024-1026)AAAfs	p.K342fs	CYP51A1_uc011khn.1_Frame_Shift_Del_p.K237fs|CYP51A1_uc003uln.3_Frame_Shift_Del_p.K279fs	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	336					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	CTAAATAACATTTTTTTTGAA	0.398													14	632	---	---	---	---					
DYNC1I1	1780	broad.mit.edu	37	7	95614249	95614249	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:95614249delT	uc003uoc.3	+	8	1031	c.754delT	c.(754-756)TTTfs	p.F252fs	DYNC1I1_uc003uod.3_Frame_Shift_Del_p.F235fs|DYNC1I1_uc003uob.2_Frame_Shift_Del_p.F215fs|DYNC1I1_uc003uoe.3_Frame_Shift_Del_p.F232fs|DYNC1I1_uc010lfl.2_Frame_Shift_Del_p.F241fs	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	252					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			TTCCGACATCTTTTTTGACTA	0.383													8	689	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100281686	100281688	+	In_Frame_Del	DEL	GCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:100281686_100281688delGCT	uc003uwg.1	-	15	2832_2834	c.1823_1825delAGC	c.(1822-1827)CAGCTC>CTC	p.Q608del		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	608	Poly-Gln.|Gln-rich.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					AATGCCGTGAGCTGCTGCTGCTG	0.690													9	131	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100284335	100284337	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:100284335_100284337delCCT	uc003uwg.1	-	7	1638_1640	c.629_631delAGG	c.(628-633)GAGGGC>GGC	p.E210del		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	210	Poly-Glu.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTCCAGCTGCcctcctcctcctc	0.616													12	250	---	---	---	---					
DNAJC2	27000	broad.mit.edu	37	7	102964992	102964992	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:102964992delT	uc003vbo.2	-	6	841	c.590delA	c.(589-591)AATfs	p.N197fs	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_Translation_Start_Site|DNAJC2_uc010lix.2_Frame_Shift_Del_p.N197fs|DNAJC2_uc003vbp.2_Translation_Start_Site|DNAJC2_uc003vbq.1_RNA	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	197	ZRF1-UBD.				'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TTTAGGAACATTTTTTTTATT	0.234													7	368	---	---	---	---					
FOXP2	93986	broad.mit.edu	37	7	114270016	114270018	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:114270016_114270018delCAG	uc003vhb.2	+	5	927_929	c.553_555delCAG	c.(553-555)CAGdel	p.Q191del	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_In_Frame_Del_p.Q216del|FOXP2_uc003vha.2_In_Frame_Del_p.Q99del|FOXP2_uc011kmu.1_In_Frame_Del_p.Q208del|FOXP2_uc011kmv.1_In_Frame_Del_p.Q191del|FOXP2_uc010ljz.1_In_Frame_Del_p.Q99del|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_In_Frame_Del_p.Q191del|FOXP2_uc003vgx.2_In_Frame_Del_p.Q191del|FOXP2_uc003vhd.2_In_Frame_Del_p.Q191del|FOXP2_uc003vhc.2_In_Frame_Del_p.Q216del	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	191	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						gcagcagcaacagcagcagcagc	0.172													12	281	---	---	---	---					
CNOT4	4850	broad.mit.edu	37	7	135047688	135047688	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr7:135047688delG	uc011kpy.1	-	11	2183	c.2091delC	c.(2089-2091)CCCfs	p.P697fs	CNOT4_uc003vss.2_Frame_Shift_Del_p.P623fs|CNOT4_uc011kpz.1_Frame_Shift_Del_p.P694fs|CNOT4_uc003vst.2_Frame_Shift_Del_p.P626fs	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						GGGTTTTGCTGGGGGGTCTGA	0.532													9	1967	---	---	---	---					
ANGPT2	285	broad.mit.edu	37	8	6378797	6378798	+	Frame_Shift_Ins	INS	-	T	T	rs34047276		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:6378797_6378798insT	uc003wqj.3	-	4	1029_1030	c.700_701insA	c.(700-702)ATAfs	p.I234fs	MCPH1_uc003wqi.2_Intron|ANGPT2_uc003wqk.3_Frame_Shift_Ins_p.I234fs|ANGPT2_uc010lri.2_Frame_Shift_Ins_p.I182fs|ANGPT2_uc003wql.3_Frame_Shift_Ins_p.I234fs	NM_001147	NP_001138	O15123	ANGP2_HUMAN	angiopoietin 2 isoform a precursor	234	Potential.				angiogenesis|blood coagulation|leukocyte migration|negative regulation of blood vessel endothelial cell migration|negative regulation of positive chemotaxis|Tie receptor signaling pathway	extracellular space	metal ion binding|receptor tyrosine kinase binding			upper_aerodigestive_tract(1)	1		Hepatocellular(245;0.0663)		Colorectal(4;0.0142)|READ - Rectum adenocarcinoma(4;0.19)|COAD - Colon adenocarcinoma(4;0.226)		GGCAGTCACTATTTTTTTTTCT	0.366													15	432	---	---	---	---					
DLC1	10395	broad.mit.edu	37	8	12957611	12957613	+	In_Frame_Del	DEL	GCT	-	-	rs137989738		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:12957611_12957613delGCT	uc003wwm.2	-	9	2677_2679	c.2233_2235delAGC	c.(2233-2235)AGCdel	p.S745del	DLC1_uc003wwk.1_In_Frame_Del_p.S308del|DLC1_uc003wwl.1_In_Frame_Del_p.S342del|DLC1_uc011kxx.1_In_Frame_Del_p.S234del	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	745	Poly-Ser.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TCTCCGACTGGCTGCTGCTGCTG	0.621													12	348	---	---	---	---					
PRKDC	5591	broad.mit.edu	37	8	48746799	48746799	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:48746799delT	uc003xqi.2	-	60	8167	c.8110delA	c.(8110-8112)AGGfs	p.R2704fs	PRKDC_uc003xqj.2_Frame_Shift_Del_p.R2704fs|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2704	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				AGGCCCAGCCTTTTTTTCCCA	0.498								NHEJ					14	1789	---	---	---	---					
TOX	9760	broad.mit.edu	37	8	59750796	59750798	+	In_Frame_Del	DEL	CTT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:59750796_59750798delCTT	uc003xtw.1	-	5	987_989	c.766_768delAAG	c.(766-768)AAGdel	p.K256del		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	256	Nuclear localization signal (Potential).					nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				CATTGGGATCCTTCTTCTTCTTC	0.453													13	738	---	---	---	---					
MTFR1	9650	broad.mit.edu	37	8	66619294	66619295	+	Frame_Shift_Ins	INS	-	C	C			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:66619294_66619295insC	uc003xvm.2	+	6	779_780	c.567_568insC	c.(565-570)CCTCCCfs	p.P189fs	MTFR1_uc011lep.1_Frame_Shift_Ins_p.P189fs|MTFR1_uc003xvn.2_Frame_Shift_Ins_p.P156fs|MTFR1_uc003xvo.1_Frame_Shift_Ins_p.P179fs	NM_014637	NP_055452	Q15390	MTFR1_HUMAN	mitochondrial fission regulator 1 isoform 1	189_190	Pro-rich.					mitochondrion|plasma membrane				pancreas(1)	1			Epithelial(68;0.0526)|BRCA - Breast invasive adenocarcinoma(89;0.156)|all cancers(69;0.171)|OV - Ovarian serous cystadenocarcinoma(28;0.194)			ACCCTCCACCTCCCCCACCGCC	0.475													7	620	---	---	---	---					
STAU2	27067	broad.mit.edu	37	8	74507471	74507471	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:74507471delT	uc003xzm.2	-	11	1327	c.1091delA	c.(1090-1092)AATfs	p.N364fs	STAU2_uc011lfg.1_Frame_Shift_Del_p.N192fs|STAU2_uc003xzn.2_Frame_Shift_Del_p.N332fs|STAU2_uc011lfh.1_Frame_Shift_Del_p.N260fs|STAU2_uc003xzo.2_Frame_Shift_Del_p.N364fs|STAU2_uc003xzp.2_Frame_Shift_Del_p.N332fs|STAU2_uc011lfi.1_Frame_Shift_Del_p.N326fs|STAU2_uc003xzq.2_Frame_Shift_Del_p.N144fs|STAU2_uc010lzk.2_Frame_Shift_Del_p.N332fs|STAU2_uc010lzl.1_Frame_Shift_Del_p.N192fs	NM_014393	NP_055208	Q9NUL3	STAU2_HUMAN	staufen homolog 2 isoform e	364	DRBM 4.				transport	endoplasmic reticulum|microtubule|nucleolus	double-stranded RNA binding				0	Breast(64;0.0138)		Epithelial(68;0.026)|BRCA - Breast invasive adenocarcinoma(89;0.0483)|all cancers(69;0.0972)			TTCTGCAGCATTTTTTTTGGC	0.328													9	544	---	---	---	---					
MYC	4609	broad.mit.edu	37	8	128750605	128750607	+	In_Frame_Del	DEL	CAG	-	-	rs61752959	byFrequency	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:128750605_128750607delCAG	uc003ysh.1	+	3	610_612	c.97_99delCAG	c.(97-99)CAGdel	p.Q37del	MYC_uc003ysi.2_In_Frame_Del_p.Q52del	NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	37	Poly-Gln.				branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		GAACTTCTACCAGCAGCAGCAGC	0.611		3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL						OREG0018982	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	429	---	---	---	---					
ZC3H3	23144	broad.mit.edu	37	8	144522387	144522389	+	In_Frame_Del	DEL	GAG	-	-	rs2272754	byFrequency	TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:144522387_144522389delGAG	uc003yyd.2	-	11	2666_2668	c.2637_2639delCTC	c.(2635-2640)TCCTCA>TCA	p.879_880SS>S		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	879_880	Poly-Ser.				mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding	p.S879F(1)		skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			Gggaggggatgaggaggaggagg	0.552													8	78	---	---	---	---					
SCRIB	23513	broad.mit.edu	37	8	144890900	144890902	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr8:144890900_144890902delTCC	uc003yzp.1	-	15	1999_2001	c.1992_1994delGGA	c.(1990-1995)GAGGAA>GAA	p.664_665EE>E	SCRIB_uc003yzo.1_In_Frame_Del_p.664_665EE>E	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	664_665	Potential.|Glu-rich.|Sufficient for targeting to adherens junction and to inhibit cell proliferation.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			actaccctcttcctcctcctcct	0.478													7	177	---	---	---	---					
KANK1	23189	broad.mit.edu	37	9	732475	732477	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:732475_732477delGAG	uc003zgl.1	+	10	3752_3754	c.3103_3105delGAG	c.(3103-3105)GAGdel	p.E1039del	KANK1_uc003zgm.2_3'UTR|KANK1_uc003zgn.1_In_Frame_Del_p.E1039del|KANK1_uc003zgs.1_In_Frame_Del_p.E881del|KANK1_uc010mgx.1_5'UTR|KANK1_uc010mgy.1_5'UTR|KANK1_uc003zgt.1_5'Flank	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	1039					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		TCTTGAAGAAGAGGAGGAGGAGG	0.463													13	704	---	---	---	---					
NOL6	65083	broad.mit.edu	37	9	33466939	33466939	+	Frame_Shift_Del	DEL	G	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:33466939delG	uc003zsz.2	-	15	2022	c.1921delC	c.(1921-1923)CTGfs	p.L641fs	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Frame_Shift_Del_p.L641fs|NOL6_uc010mjv.2_Frame_Shift_Del_p.L638fs|NOL6_uc011lob.1_Frame_Shift_Del_p.L589fs|NOL6_uc003ztb.1_Frame_Shift_Del_p.L641fs	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	641					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		AGTGCATCCAGGGGGCCCCCC	0.512											OREG0019137	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	2064	---	---	---	---					
FAM74A3	728495	broad.mit.edu	37	9	40715923	40715924	+	RNA	DEL	AA	-	-	rs62565543		TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:40715923_40715924delAA	uc010mmk.2	+	1		c.400_401delAA				NR_026801				Homo sapiens family with sequence similarity 74, member A3 (FAM74A3), non-coding RNA.											skin(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GAAGACGTGGAAAGAGCTCAGA	0.569													10	163	---	---	---	---					
FKBP15	23307	broad.mit.edu	37	9	115969556	115969556	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:115969556delT	uc004bgs.2	-	3	308	c.190delA	c.(190-192)ACAfs	p.T64fs	FKBP15_uc010muu.1_Frame_Shift_Del_p.T128fs|FKBP15_uc011lxd.1_5'UTR|FKBP15_uc010mut.1_Intron|FKBP15_uc004bgt.2_Frame_Shift_Del_p.T64fs	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	64					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						GCTGGTGCTGTTTTTGGTGTT	0.378													7	1480	---	---	---	---					
DAB2IP	153090	broad.mit.edu	37	9	124522389	124522391	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:124522389_124522391delAAG	uc004bln.2	+	6	826_828	c.757_759delAAG	c.(757-759)AAGdel	p.K257del	DAB2IP_uc004blo.2_In_Frame_Del_p.K161del	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	285	C2.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						GGAGACCGACAAGAAGAAGAAGA	0.601													9	385	---	---	---	---					
CRB2	286204	broad.mit.edu	37	9	126139182	126139184	+	In_Frame_Del	DEL	CCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chr9:126139182_126139184delCCT	uc004bnx.1	+	13	3791_3793	c.3699_3701delCCT	c.(3697-3702)TGCCTC>TGC	p.L1239del		NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	1239	Helical; (Potential).			Missing (in Ref. 2; BAC86684).		extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CCTGTGCCTGCCTCCTCCTCCTC	0.670													8	91	---	---	---	---					
RAI2	10742	broad.mit.edu	37	X	17818550	17818550	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:17818550delA	uc004cyf.2	-	3	2151	c.1581delT	c.(1579-1581)TTTfs	p.F527fs	RAI2_uc004cyg.2_Frame_Shift_Del_p.F527fs|RAI2_uc010nfa.2_Frame_Shift_Del_p.F527fs|RAI2_uc004cyh.3_Frame_Shift_Del_p.F527fs|RAI2_uc011miy.1_Frame_Shift_Del_p.F477fs	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	527					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					ACTTTCTTGGAAAAAAGGTGG	0.333													10	2034	---	---	---	---					
HUWE1	10075	broad.mit.edu	37	X	53586347	53586347	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:53586347delA	uc004dsp.2	-	57	8285	c.7883delT	c.(7882-7884)TTCfs	p.F2628fs	HUWE1_uc004dsn.2_Frame_Shift_Del_p.F1452fs|uc004dss.2_5'Flank|MIRLET7F2_hsa-let-7f-2|MI0000068_5'Flank	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2628					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CTGATCATGGAAAAAGTCATC	0.532													7	672	---	---	---	---					
FAM155B	27112	broad.mit.edu	37	X	68749484	68749486	+	In_Frame_Del	DEL	GAA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:68749484_68749486delGAA	uc004dxk.2	+	3	1152_1154	c.1104_1106delGAA	c.(1102-1107)GCGAAG>GCG	p.K372del		NM_015686	NP_056501	O75949	F155B_HUMAN	transmembrane protein 28	373	Poly-Lys.					integral to membrane				ovary(1)|breast(1)	2						CCTGTGAGGCGAAGAAGAAGAAG	0.369													8	261	---	---	---	---					
MED12	9968	broad.mit.edu	37	X	70360648	70360650	+	In_Frame_Del	DEL	CAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:70360648_70360650delCAG	uc004dyy.2	+	42	6407_6409	c.6208_6210delCAG	c.(6208-6210)CAGdel	p.Q2076del	MED12_uc004dyz.2_In_Frame_Del_p.Q2075del|MED12_uc004dza.2_In_Frame_Del_p.Q1926del|MED12_uc010nla.2_In_Frame_Del_p.Q705del	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	2076	Gln-rich.				androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					gcaacagcaacagcagcagcagc	0.291													8	224	---	---	---	---					
NAP1L2	4674	broad.mit.edu	37	X	72434104	72434104	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:72434104delT	uc004ebi.2	-	1	581	c.225delA	c.(223-225)AAAfs	p.K75fs	NAP1L2_uc011mqj.1_Intron	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	75					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TATCGCCACCTTTTTTCCCAT	0.498													8	680	---	---	---	---					
TSIX	9383	broad.mit.edu	37	X	73047124	73047125	+	RNA	DEL	AC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:73047124_73047125delAC	uc004ebn.2	+	1		c.35085_35086delAC			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GCCACACATGACACACACACAC	0.470													9	596	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76778785	76778787	+	In_Frame_Del	DEL	TCT	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:76778785_76778787delTCT	uc004ecp.3	-	31	7024_7026	c.6792_6794delAGA	c.(6790-6795)GAAGAG>GAG	p.2264_2265EE>E	ATRX_uc004ecq.3_In_Frame_Del_p.2226_2227EE>E|ATRX_uc004eco.3_In_Frame_Del_p.2049_2050EE>E	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2264_2265	Poly-Glu.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTCAGTCAACTCTTCTTCTTCTT	0.369			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						10	1145	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76907782	76907784	+	In_Frame_Del	DEL	TCC	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:76907782_76907784delTCC	uc004ecp.3	-	15	4609_4611	c.4377_4379delGGA	c.(4375-4380)GAGGAA>GAA	p.1459_1460EE>E	ATRX_uc004ecq.3_In_Frame_Del_p.1421_1422EE>E|ATRX_uc004eco.3_In_Frame_Del_p.1244_1245EE>E	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1459_1460	Poly-Glu.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ctcctcctcttcctcctcctcct	0.212			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						17	496	---	---	---	---					
RPL36A	6173	broad.mit.edu	37	X	100646805	100646805	+	Frame_Shift_Del	DEL	A	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:100646805delA	uc004ehk.2	+	3	256	c.172delA	c.(172-174)AAAfs	p.K58fs	BTK_uc010nno.2_5'Flank|RPL36A_uc004ehj.1_Frame_Shift_Del_p.K58fs	NM_021029	NP_066357	P83881	RL36A_HUMAN	ribosomal protein L36a	58					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	protein binding|structural constituent of ribosome				0						GATTTTCCGGAAAAAGGTGAG	0.418													8	682	---	---	---	---					
ARMCX3	51566	broad.mit.edu	37	X	100880152	100880154	+	In_Frame_Del	DEL	TGA	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:100880152_100880154delTGA	uc004ehz.1	+	5	716_718	c.183_185delTGA	c.(181-186)TCTGAT>TCT	p.D66del	ARMCX3_uc004eia.1_In_Frame_Del_p.D66del|ARMCX3_uc004eib.1_In_Frame_Del_p.D66del|ARMCX3_uc004eic.1_In_Frame_Del_p.D66del	NM_016607	NP_057691	Q9UH62	ARMX3_HUMAN	armadillo repeat containing, X-linked 3	66						integral to membrane	binding			ovary(1)|lung(1)	2						ATGACTGGTCTGATGATGATGAT	0.448													16	1178	---	---	---	---					
HTATSF1	27336	broad.mit.edu	37	X	135585048	135585050	+	In_Frame_Del	DEL	AAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:135585048_135585050delAAG	uc004ezw.2	+	6	1104_1106	c.682_684delAAG	c.(682-684)AAGdel	p.K232del	HTATSF1_uc004ezx.2_In_Frame_Del_p.K232del	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	232	Poly-Lys.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGATGCCTCAAAGAAGAAGAAGA	0.335													15	555	---	---	---	---					
SPANXN2	494119	broad.mit.edu	37	X	142803692	142803692	+	Frame_Shift_Del	DEL	T	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:142803692delT	uc004fbz.2	-	1	825	c.71delA	c.(70-72)AATfs	p.N24fs		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	24										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TACCTCATCATTTTTTTTGTT	0.239													20	857	---	---	---	---					
MAGEA10	4109	broad.mit.edu	37	X	151303906	151303908	+	In_Frame_Del	DEL	AGG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:151303906_151303908delAGG	uc004ffk.2	-	5	593_595	c.185_187delCCT	c.(184-189)TCCTGC>TGC	p.S62del	MAGEA10_uc004ffl.2_In_Frame_Del_p.S62del	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	62	Poly-Ser.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGGATAGCaggaggaggagga	0.419													25	583	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	-	-			TCGA-IB-7897-01A-21D-2201-08	TCGA-IB-7897-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c284154-c3c3-4cd9-be15-7299b375fc83	e9687af7-9276-4f39-9f3d-5a96e305026f	g.chrX:152087570_152087572delGAG	uc010ntv.1	+	7	512_514	c.475_477delGAG	c.(475-477)GAGdel	p.E165del	ZNF185_uc011myg.1_In_Frame_Del_p.E165del|ZNF185_uc011myh.1_In_Frame_Del_p.E165del|ZNF185_uc011myi.1_In_Frame_Del_p.E165del|ZNF185_uc011myj.1_In_Frame_Del_p.E165del|ZNF185_uc011myk.1_In_Frame_Del_p.E165del|ZNF185_uc004fgw.3_In_Frame_Del_p.E30del|ZNF185_uc004fgu.2_5'UTR|ZNF185_uc004fgv.2_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.522													12	188	---	---	---	---					
