Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AMIGO1	57463	broad.mit.edu	37	1	110050830	110050830	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr1:110050830G>A	uc001dxx.3	-	2	1087	c.705C>T	c.(703-705)CAC>CAT	p.H235H		NM_020703	NP_065754	Q86WK6	AMGO1_HUMAN	AMIGO protein precursor	235	LRRCT.|Extracellular (Potential).				axonal fasciculation|heterophilic cell-cell adhesion|homophilic cell adhesion|myelination|positive regulation of axonogenesis	axon|integral to membrane				ovary(1)|breast(1)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0182)|Epithelial(280;0.046)|all cancers(265;0.0492)|READ - Rectum adenocarcinoma(129;0.0689)|LUSC - Lung squamous cell carcinoma(189;0.227)		GATACTGCCAGTGTGAAAACA	0.517000													3	83	---	---	---	---	0	0	0.004672	0	0
RC3H1	149041	broad.mit.edu	37	1	173934152	173934152	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr1:173934152C>T	uc001gju.3	-	9	1528	c.1441G>A	c.(1441-1443)GGT>AGT	p.G481S	RC3H1_uc010pms.1_Missense_Mutation_p.G481S|RC3H1_uc001gjv.2_Missense_Mutation_p.G481S|RC3H1_uc010pmt.1_Missense_Mutation_p.G481S	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	481					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TCCACTGCACCTTCATCTGGA	0.498000													3	121	---	---	---	---	0	0	0.004672	0	0
PHF21A	51317	broad.mit.edu	37	11	45959840	45959840	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr11:45959840G>A	uc001ncc.3	-	15	2097	c.1473C>T	c.(1471-1473)TGC>TGT	p.C491C	PHF21A_uc001ncb.3_Silent_p.C445C|PHF21A_uc009ykx.2_Silent_p.C445C|PHF21A_uc001nca.1_Silent_p.C227C	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	491	Required for transcriptional repression.|PHD-type.				blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						TGCAAACGCTGCAAAAATCCT	0.393000													4	94	---	---	---	---	0	0	0.009096	0	0
CLNS1A	1207	broad.mit.edu	37	11	77333647	77333647	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr11:77333647G>T	uc001oyk.2	-	5	636	c.544C>A	c.(544-546)CAA>AAA	p.Q182K	CLNS1A_uc001oyl.2_Missense_Mutation_p.Q148K	NM_001293	NP_001284	P54105	ICLN_HUMAN	chloride channel, nucleotide-sensitive, 1A	182					blood circulation|cell volume homeostasis|chloride transport|ncRNA metabolic process|spliceosomal snRNP assembly	cytoskeleton|cytosol|nucleus|plasma membrane	protein binding			ovary(1)	1	all_cancers(14;5.43e-17)|all_epithelial(13;1.78e-19)		Epithelial(5;1.02e-48)|BRCA - Breast invasive adenocarcinoma(5;1.4e-30)			AGTGTGGCTTGGCCTTCTGCT	0.408000													4	86	---	---	---	---	0.000673444	0.000812094	0.069234	1	0
ASAM	79827	broad.mit.edu	37	11	122968529	122968529	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr11:122968529T>C	uc001pyt.2	-	2	519	c.160A>G	c.(160-162)ACC>GCC	p.T54A		NM_024769	NP_079045	Q9H6B4	CLMP_HUMAN	adipocyte-specific adhesion molecule precursor	54	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|tight junction					0		Breast(109;0.0025)|Lung NSC(97;0.0179)|all_lung(97;0.0182)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.73e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		TCATTATCGGTGAGCAGCCAT	0.493000													4	124	---	---	---	---	0	0	0.009096	0	0
DDX51	317781	broad.mit.edu	37	12	132626093	132626093	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr12:132626093C>G	uc001ujy.3	-	7	1093	c.1054G>C	c.(1054-1056)GAC>CAC	p.D352H	NOC4L_uc001ujz.1_5'Flank	NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	352	Helicase ATP-binding.				rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		TCGATGTGGTCCACCAGGCGG	0.647000													3	38	---	---	---	---	0	0	0.004672	0	0
SMOC1	64093	broad.mit.edu	37	14	70477484	70477484	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr14:70477484G>A	uc001xls.1	+	8	931	c.678G>A	c.(676-678)TCG>TCA	p.S226S	SMOC1_uc001xlt.1_Silent_p.S226S	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	226	Thyroglobulin type-1 2.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		AAGTCTATTCGTGTGACCAGG	0.527000													4	122	---	---	---	---	0	0	0.009096	0	0
PIK3R5	23533	broad.mit.edu	37	17	8808196	8808196	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr17:8808196T>C	uc002glt.2	-	5	377	c.310A>G	c.(310-312)AAG>GAG	p.K104E	PIK3R5_uc010vuz.1_Missense_Mutation_p.K104E|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Missense_Mutation_p.K104E|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	104					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						CTGGCTGCCTTCAGAAGGAGA	0.552000													27	50	---	---	---	---	0	0	0.030593	0	0
APCDD1	147495	broad.mit.edu	37	18	10485461	10485461	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr18:10485461C>A	uc002kom.3	+	4	1131	c.777C>A	c.(775-777)AAC>AAA	p.N259K		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	259	Extracellular (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		GGCTTCAGAACCACGACCATG	0.577000													5	134	---	---	---	---	0.000602214	0.000748206	0.014758	1	0
LOC55908	55908	broad.mit.edu	37	19	11348845	11348845	+	Silent	SNP	T	G	G			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr19:11348845T>G	uc010dxx.2	+	1	29	c.27T>G	c.(25-27)CCT>CCG	p.P9P	DOCK6_uc010xlq.1_5'Flank|DOCK6_uc002mqs.3_Intron|LOC55908_uc010dxw.2_Intron	NM_018687	NP_061157	Q6UXH0	TD26_HUMAN	hepatocellular carcinoma-associated gene TD26	Error:Variant_position_missing_in_Q6UXH0_after_alignment						extracellular region					0						CCCCCTTCCCTGGGGCACAGC	0.632000													7	84	---	---	---	---	0	0	0.080935	0	0
HIF3A	64344	broad.mit.edu	37	19	46811989	46811989	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr19:46811989C>T	uc002peh.2	+	5	547	c.518C>T	c.(517-519)ACC>ATC	p.T173I	HIF3A_uc002pef.1_Missense_Mutation_p.T173I|HIF3A_uc002peg.3_Missense_Mutation_p.T173I|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.T117I|HIF3A_uc002pej.1_Missense_Mutation_p.T104I|HIF3A_uc002pek.2_Missense_Mutation_p.T117I|HIF3A_uc010xxy.1_Missense_Mutation_p.T104I|HIF3A_uc002pel.2_Missense_Mutation_p.T171I|HIF3A_uc010xxz.1_Missense_Mutation_p.T122I	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	173					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		AGTACACTCACCAGCCGCGGG	0.716000													5	5	---	---	---	---	0	0	0.021553	0	0
C2orf56	55471	broad.mit.edu	37	2	37474607	37474607	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr2:37474607C>T	uc002rqa.3	+	9	1020	c.945C>T	c.(943-945)TGC>TGT	p.C315C	C2orf56_uc010ynj.1_RNA|C2orf56_uc002rqc.3_Silent_p.C217C|C2orf56_uc010ynk.1_Silent_p.C244C|C2orf56_uc010ynl.1_Silent_p.C288C|C2orf56_uc010fah.2_RNA	NM_144736	NP_653337	Q7L592	MIDA_HUMAN	hypothetical protein LOC55471 isoform 1	315					mitochondrial respiratory chain complex I assembly	mitochondrion	enzyme binding|methyltransferase activity			central_nervous_system(1)	1		all_hematologic(82;0.21)				AGGGGTTTTGCGACCACAAGC	0.343000													4	142	---	---	---	---	0	0	0.014758	0	0
ISM1	140862	broad.mit.edu	37	20	13279730	13279730	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr20:13279730G>A	uc010gce.1	+	6	1025	c.1019G>A	c.(1018-1020)CGC>CAC	p.R340H	TASP1_uc010zri.1_Intron	NM_080826	NP_543016	B1AKI9	ISM1_HUMAN	isthmin 1 homolog precursor	340	AMOP.					extracellular region					0						ATCTTCGACCGCATCAAGCGC	0.592000													3	28	---	---	---	---	0	0	0.004672	0	0
ZHX3	23051	broad.mit.edu	37	20	39831621	39831621	+	Silent	SNP	T	G	G			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr20:39831621T>G	uc002xjs.1	-	3	2314	c.1936A>C	c.(1936-1938)AGA>CGA	p.R646R	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Silent_p.R646R|ZHX3_uc002xjt.1_Silent_p.R646R|ZHX3_uc002xju.1_Silent_p.R646R|ZHX3_uc002xjv.1_Silent_p.R646R|ZHX3_uc002xjw.1_Silent_p.R646R|ZHX3_uc010ggg.1_Silent_p.R646R	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	646	Homeobox 3.				negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				GTTTCACTTCTCAGGCGGTCC	0.493000													6	254	---	---	---	---	0	0	0.021553	0	0
ST13	6767	broad.mit.edu	37	22	41231580	41231580	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr22:41231580G>A	uc003aze.2	-	7	705	c.562C>T	c.(562-564)CGG>TGG	p.R188W	ST13_uc011aow.1_Missense_Mutation_p.R178W	NM_003932	NP_003923	P50502	F10A1_HUMAN	heat shock 70kD protein binding protein	188	TPR 3.						protein binding, bridging				0						GCTTTCCCCCGCCACTTGTAA	0.358000													6	328	---	---	---	---	0	0	0.029380	0	0
NPR3	4883	broad.mit.edu	37	5	32774825	32774825	+	Silent	SNP	T	C	C			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr5:32774825T>C	uc003jhv.2	+	4	1289	c.1071T>C	c.(1069-1071)TTT>TTC	p.F357F	NPR3_uc010iuo.2_Silent_p.F141F|NPR3_uc011cnz.1_Silent_p.F141F|NPR3_uc003jhu.2_Silent_p.F357F	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	357	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	TTAACATGTTTGTTGAAGGAT	0.433000													6	282	---	---	---	---	0	0	0.029380	0	0
RNF14	9604	broad.mit.edu	37	5	141364442	141364442	+	Silent	SNP	C	G	G			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr5:141364442C>G	uc003lly.2	+	7	1350	c.1311C>G	c.(1309-1311)CTC>CTG	p.L437L	RNF14_uc003llz.2_Silent_p.L437L|RNF14_uc003lma.2_Silent_p.L437L|RNF14_uc003lmb.2_Silent_p.L311L|RNF14_uc003lmc.2_Silent_p.L437L|RNF14_uc011dbg.1_Silent_p.L261L|RNF14_uc011dbh.1_Silent_p.L134L|RNF14_uc003lmd.2_Silent_p.L437L	NM_183399	NP_899646	Q9UBS8	RNF14_HUMAN	ring finger protein 14 isoform 1	437	Interaction with androgen receptor.				androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|protein ubiquitination|regulation of androgen receptor signaling pathway|regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|small conjugating protein ligase activity|transcription coactivator activity|zinc ion binding				0		all_hematologic(541;0.0536)|Ovarian(839;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		TGGGTTCTCTCTCTAGAGCAA	0.403000													4	229	---	---	---	---	0	0	0.009096	0	0
HIST1H4L	8368	broad.mit.edu	37	6	27841025	27841025	+	Silent	SNP	A	T	T			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr6:27841025A>T	uc003njz.2	-	1	265	c.264T>A	c.(262-264)GTT>GTA	p.V88V	HIST1H3I_uc003njy.2_5'Flank	NM_003546	NP_003537	P62805	H4_HUMAN	histone cluster 1, H4l	88					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)|breast(1)	2						TGAGCGCGTAAACCACGTCCA	0.542000													36	48	---	---	---	---	0	0	0.080422	0	0
PLG	5340	broad.mit.edu	37	6	161123357	161123357	+	Silent	SNP	T	C	C			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr6:161123357T>C	uc003qtm.3	+	1	84	c.21T>C	c.(19-21)GTT>GTC	p.V7V		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	7					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AGGAAGTGGTTCTTCTACTTC	0.363000													3	163	---	---	---	---	0	0	0.021553	0	0
PLEKHA8	84725	broad.mit.edu	37	7	30118255	30118255	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr7:30118255C>T	uc003tam.1	+	14	1503	c.1412C>T	c.(1411-1413)ACC>ATC	p.T471I	PLEKHA8_uc003tao.2_Intron|PLEKHA8_uc003tap.1_Intron|PLEKHA8_uc003tan.2_Intron|uc003taq.2_5'Flank	NM_032639	NP_116028	Q96JA3	PKHA8_HUMAN	pleckstrin homology domain containing, family A	471					protein transport	cytoplasm	glycolipid binding|glycolipid transporter activity			breast(3)|ovary(1)	4						GCCGCGTTAACCGTAAAGGAA	0.488000													4	87	---	---	---	---	0	0	0.009096	0	0
RBPMS	11030	broad.mit.edu	37	8	30361916	30361916	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr8:30361916G>A	uc003xic.1	+	5	1025	c.360G>A	c.(358-360)CTG>CTA	p.L120L	RBPMS_uc003xid.1_Silent_p.L120L|RBPMS_uc003xie.1_Silent_p.L120L|RBPMS_uc003xif.1_RNA|RBPMS_uc011lba.1_Silent_p.L120L|RBPMS_uc003xib.2_Silent_p.L120L|RBPMS_uc010lvh.1_Silent_p.L16L	NM_006867	NP_006858	Q93062	RBPMS_HUMAN	RNA-binding protein with multiple splicing	120					positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|nucleus	nucleotide binding|poly(A) RNA binding|protein binding|transcription coactivator activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.144)|Kidney(114;0.172)		GTACTCCTCTGCCCAACACTG	0.433000													12	131	---	---	---	---	0	0	0.105934	0	0
RALYL	138046	broad.mit.edu	37	8	85785580	85785580	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr8:85785580C>G	uc003ycq.3	+	8	1049	c.633C>G	c.(631-633)GAC>GAG	p.D211E	RALYL_uc003ycr.3_Missense_Mutation_p.D211E|RALYL_uc003ycs.3_Missense_Mutation_p.D211E|RALYL_uc010lzy.2_Missense_Mutation_p.D200E|RALYL_uc003yct.3_Missense_Mutation_p.D224E|RALYL_uc003ycu.3_Missense_Mutation_p.D138E|RALYL_uc003ycv.3_Missense_Mutation_p.D123E	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	211	Potential.						identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						CTAAAATTGACTCCTTGCTAG	0.428000													2	14	---	---	---	---	0	0	0.004672	0	0
DCAF10	79269	broad.mit.edu	37	9	37857330	37857330	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr9:37857330C>G	uc004aao.2	+	5	1221	c.1147C>G	c.(1147-1149)CGA>GGA	p.R383G	DCAF10_uc010mlz.2_Missense_Mutation_p.R210G|DCAF10_uc004aap.2_Intron	NM_024345	NP_077321	Q5QP82	DCA10_HUMAN	WD repeat domain 32	383	Ser-rich.					CUL4 RING ubiquitin ligase complex				central_nervous_system(1)	1						ACACATGTCACGAGCCTCTCA	0.338000													12	114	---	---	---	---	0	0	0.055883	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070139	141070139	+	Missense_Mutation	SNP	C	T	T	rs143443709	by1000genomes	TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr9:141070139C>T	uc004com.2	+	3	298	c.37C>T	c.(37-39)CTC>TTC	p.L13F	TUBBP5_uc010ncq.2_Missense_Mutation_p.L127F					RecName: Full=Putative tubulin beta-4q chain;												0						CGGGCAGGTCCTCAGGCCAGA	0.667000													4	62	---	---	---	---	0	0	0.014758	0	0
DMD	1756	broad.mit.edu	37	X	31854884	31854884	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chrX:31854884G>A	uc004dda.1	-	49	7395	c.7151C>T	c.(7150-7152)TCT>TTT	p.S2384F	DMD_uc004dcr.1_5'UTR|DMD_uc004dcs.1_5'UTR|DMD_uc004dct.1_5'UTR|DMD_uc004dcu.1_5'UTR|DMD_uc004dcv.1_5'UTR|DMD_uc004dcw.2_Missense_Mutation_p.S1040F|DMD_uc004dcx.2_Missense_Mutation_p.S1043F|DMD_uc004dcz.2_Missense_Mutation_p.S2261F|DMD_uc004dcy.1_Missense_Mutation_p.S2380F|DMD_uc004ddb.1_Missense_Mutation_p.S2376F|DMD_uc004ddd.1_5'UTR	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2384					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CTGCCCTTTAGACAAAATCTC	0.408000													5	98	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	13	77402068	77402071	+	IGR	DEL	GGAA	-	-			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr13:77402068_77402071delGGAA								LMO7 (968064 upstream) : KCTD12 (52233 downstream)																							gggggaggggggaaggaaggaagg	0.152													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	102989877	102989878	+	IGR	INS	-	AGAGAGAG	AGAGAGAG	rs149529753	by1000genomes	TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr14:102989877_102989878insAGAGAGAG								ANKRD9 (13749 upstream) : RCOR1 (69355 downstream)																							ggaagaaagaaagAGAAAAAAA	0.272													6	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22646862	22646862	+	IGR	DEL	C	-	-			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr15:22646862delC								MIR1268 (133582 upstream) : GOLGA8DP (55423 downstream)																							CCCAAGTGAGCAggctggggc	0.463													6	8	---	---	---	---					
CSH2	1443	broad.mit.edu	37	17	61952951	61952952	+	5'Flank	DEL	TC	-	-			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr17:61952951_61952952delTC	uc002jch.2	-						CSH2_uc002jcg.2_5'Flank|CSH2_uc002jci.2_5'Flank|GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Intron	NM_020991	NP_066271	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 2 isoform 1						female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding				0						tttctttctttctttctttctt	0.000													2	4	---	---	---	---					
FAM187B	148109	broad.mit.edu	37	19	35719750	35719750	+	5'Flank	DEL	T	-	-			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr19:35719750delT	uc002nyk.1	-							NM_152481	NP_689694	Q17R55	F187B_HUMAN	family with sequence similarity 187, member B							integral to membrane				ovary(2)	2						ACTGtttttcttttttttttt	0.249													3	4	---	---	---	---					
FKRP	79147	broad.mit.edu	37	19	47259363	47259364	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr19:47259363_47259364insC	uc002pfn.2	+	4	953_954	c.656_657insC	c.(655-657)GGCfs	p.G219fs	FKRP_uc002pfp.2_Frame_Shift_Ins_p.G219fs	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	219						extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		CGGCCGGTGGGCACCAGCCTCT	0.762													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	39237659	39237659	+	IGR	DEL	A	-	-			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr3:39237659delA								XIRP1 (3582 upstream) : CX3CR1 (67327 downstream)																							caaaaaaaagaaaagaaaaga	0.000													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	111197863	111197868	+	IGR	DEL	CACACA	-	-	rs7650195		TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr3:111197863_111197868delCACACA								PVRL3 (285490 upstream) : CD96 (63058 downstream)																							CGAACAGCCTcacacacacacacaca	0.442													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	90475785	90475786	+	IGR	INS	-	A	A	rs140241795	by1000genomes	TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr5:90475785_90475786insA								GPR98 (15753 upstream) : ARRDC3 (188755 downstream)																							aggaaggaaggaggaaggaagg	0.030													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	12348462	12348465	+	IGR	DEL	TCTT	-	-	rs71754709		TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr6:12348462_12348465delTCTT								EDN1 (51036 upstream) : PHACTR1 (368423 downstream)																							cttcctttcctctttctttctttc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	132083054	132083055	+	IGR	INS	-	TCCT	TCCT	rs4053155		TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chr6:132083054_132083055insTCCT								ENPP3 (14505 upstream) : ENPP1 (46101 downstream)																							TTTTAAGTAGAtccttccttcc	0.158													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	9368329	9368330	+	IGR	INS	-	TG	TG			TCGA-BJ-A0ZC-01A-12D-A13W-08	TCGA-BJ-A0ZC-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ae01da3a-78ad-4405-a24a-bcd786b4846b	bbb6db00-380f-4352-b719-235d668bdd23	g.chrY:9368329_9368330insTG								TSPY1 (20940 upstream) : RBMY3AP (80000 downstream)																							gtctttgtgtttgtgtgtgtgt	0.272													7	3	---	---	---	---					
