Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ADM	133	broad.mit.edu	37	11	10327267	10327267	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr11:10327267C>T	uc001mik.1	+	1	637	c.20C>T	c.(19-21)GCC>GTC	p.A7V	ADM_uc001mil.1_Missense_Mutation_p.A7V|ADM_uc001mim.1_5'UTR	NM_001124	NP_001115	P35318	ADML_HUMAN	adrenomedullin precursor	7					blood circulation|cAMP biosynthetic process|female pregnancy|negative regulation of vasoconstriction|progesterone biosynthetic process|response to wounding	cytoplasm|extracellular space|soluble fraction	hormone activity			central_nervous_system(1)	1				all cancers(16;3.51e-65)|Epithelial(150;1.52e-62)|BRCA - Breast invasive adenocarcinoma(625;0.0257)		GTTTCCGTCGCCCTGATGTAC	0.642													43	56	---	---	---	---	0	0	0.111260	0	0
ANKRD42	338699	broad.mit.edu	37	11	82959006	82959006	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr11:82959006C>T	uc001ozz.1	+	10	1555	c.1133C>T	c.(1132-1134)GCC>GTC	p.A378V	ANKRD42_uc010rsv.1_Silent_p.G448G|ANKRD42_uc001paa.2_Silent_p.G448G|ANKRD42_uc001pab.1_Silent_p.G447G	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	378										skin(1)	1						AACTGCAGGGCCAGCTGGAGT	0.343													3	38	---	---	---	---	0	0	0.009096	0	0
KRAS	3845	broad.mit.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	C	C	rs121913240		TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr12:25380276T>C	uc001rgp.1	-	3	363	c.182A>G	c.(181-183)CAA>CGA	p.Q61R	KRAS_uc001rgq.1_Missense_Mutation_p.Q61R	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	61	GTP.		Q -> R (in a colorectal cancer sample; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.Q61H(140)|p.Q61L(51)|p.Q61R(44)|p.Q61K(24)|p.Q61P(11)|p.Q61E(10)|p.Q61D(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GTACTCCTCTTGACCTGCTGT	0.418	Q61R(PANC0213_PANCREAS)|Q61L(NCIH650_LUNG)|Q61L(SW948_LARGE_INTESTINE)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			34	76	---	---	---	---	0	0	0.074837	0	0
SPATS2	65244	broad.mit.edu	37	12	49890689	49890689	+	Silent	SNP	A	G	G			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr12:49890689A>G	uc001rud.2	+	8	1589	c.600A>G	c.(598-600)CAA>CAG	p.Q200Q	SPATS2_uc001rue.2_RNA|SPATS2_uc009zli.1_Silent_p.Q200Q|SPATS2_uc001ruf.2_Silent_p.Q200Q|SPATS2_uc001rug.2_Silent_p.Q200Q	NM_023071	NP_075559	Q86XZ4	SPAS2_HUMAN	spermatogenesis associated, serine-rich 2	200						cytoplasm				breast(1)	1						ACAATTCTCAACAACCCAGGA	0.438													69	94	---	---	---	---	0	0	0.139131	0	0
ATP2A2	488	broad.mit.edu	37	12	110771021	110771021	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr12:110771021A>G	uc001tqk.3	+	10	1783	c.1220A>G	c.(1219-1221)TAT>TGT	p.Y407C	ATP2A2_uc001tql.3_Missense_Mutation_p.Y407C|ATP2A2_uc010sxy.1_Missense_Mutation_p.Y380C	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	407	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						TGTCACCAGTATGATGGTCTG	0.423													81	126	---	---	---	---	0	0	0.139131	0	0
RPUSD1	113000	broad.mit.edu	37	16	837367	837367	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr16:837367G>A	uc002cka.2	-	2	527	c.293C>T	c.(292-294)GCT>GTT	p.A98V	RPUSD1_uc002ckb.2_Missense_Mutation_p.A98V|RPUSD1_uc002ckc.2_5'UTR|RPUSD1_uc002ckd.2_Missense_Mutation_p.A98V|CHTF18_uc010uus.1_5'Flank|CHTF18_uc010bre.1_5'Flank|CHTF18_uc002cke.3_5'Flank|CHTF18_uc002ckf.3_5'Flank|CHTF18_uc010brf.2_5'Flank|CHTF18_uc002ckg.3_5'Flank	NM_058192	NP_478072	Q9UJJ7	RUSD1_HUMAN	RNA pseudouridylate synthase domain containing	98					pseudouridine synthesis		pseudouridine synthase activity|RNA binding				0		Hepatocellular(780;0.00335)				TGCCAGGTAAGCCTTGGTCAC	0.657													8	14	---	---	---	---	0	0	0.047766	0	0
KIAA0895L	653319	broad.mit.edu	37	16	67213988	67213988	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr16:67213988C>T	uc002ert.2	-	2	1301	c.526G>A	c.(526-528)GTG>ATG	p.V176M	KIAA0895L_uc002err.2_5'Flank|KIAA0895L_uc002ers.2_5'Flank|KIAA0895L_uc002eru.2_Missense_Mutation_p.V176M|EXOC3L_uc002erv.1_RNA	NM_001040715	NP_001035805	Q68EN5	K895L_HUMAN	hypothetical protein LOC653319	176											0						TTTTCCAGCACAGCCGTGGGC	0.582													36	88	---	---	---	---	0	0	0.064281	0	0
SCN9A	6335	broad.mit.edu	37	2	167055182	167055182	+	Nonstop_Mutation	SNP	C	G	G			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr2:167055182C>G	uc010fpl.2	-	27	6275	c.5934G>C	c.(5932-5934)TAG>TAC	p.*1978Y	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1978						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AAATGAAGCTCTATTTTTTGC	0.318													11	17	---	---	---	---	0	0	0.069234	0	0
MITF	4286	broad.mit.edu	37	3	69987187	69987187	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr3:69987187A>G	uc003dnz.2	+	3	685	c.569A>G	c.(568-570)AAC>AGC	p.N190S	MITF_uc011bgb.1_Missense_Mutation_p.N138S|MITF_uc003doa.2_Missense_Mutation_p.N189S|MITF_uc003dob.2_Missense_Mutation_p.N174S|MITF_uc003dod.2_Missense_Mutation_p.N165S|MITF_uc003doe.2_Missense_Mutation_p.N83S|MITF_uc003dof.2_Missense_Mutation_p.N83S	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	190					melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		CTTAACTCCAACTGTGAAAAA	0.488			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						41	70	---	---	---	---	0	0	0.086207	0	0
MFAP3L	9848	broad.mit.edu	37	4	170913279	170913279	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr4:170913279G>A	uc003isp.3	-	3	658	c.480C>T	c.(478-480)GCC>GCT	p.A160A	MFAP3L_uc003isn.3_Silent_p.A57A	NM_021647	NP_067679	O75121	MFA3L_HUMAN	microfibrillar-associated protein 3-like isoform	160	Helical; (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0201)|LUSC - Lung squamous cell carcinoma(193;0.116)		CGATGGTGAAGGCCACCAGGC	0.512													7	159	---	---	---	---	0	0	0.038147	0	0
ABCF1	23	broad.mit.edu	37	6	30553911	30553911	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr6:30553911G>C	uc003nql.2	+	18	1809	c.1714G>C	c.(1714-1716)GAA>CAA	p.E572Q	ABCF1_uc003nqm.2_Missense_Mutation_p.E534Q|ABCF1_uc010jsb.2_Intron	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	572					inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						TCCTCTCCAGGAAAAACAAAC	0.552													29	40	---	---	---	---	0	0	0.108266	0	0
HLA-DMA	3108	broad.mit.edu	37	6	32917464	32917464	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr6:32917464G>A	uc003ocm.2	-	3	662	c.576C>T	c.(574-576)TTC>TTT	p.F192F	HLA-DMA_uc011dqm.1_3'UTR	NM_006120	NP_006111	Q31604	Q31604_HUMAN	major histocompatibility complex, class II, DM	192						integral to membrane|MHC class II protein complex					0						GTTCTGGTGTGAAGTTTAAGT	0.478													4	102	---	---	---	---	0	0	0.009096	0	0
SLA	6503	broad.mit.edu	37	8	134050906	134050906	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr8:134050906T>G	uc003ytz.2	-	9	1526	c.694A>C	c.(694-696)AGC>CGC	p.S232R	TG_uc003ytw.2_Intron|TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron|SLA_uc011lje.1_Missense_Mutation_p.S249R|SLA_uc011ljf.1_Missense_Mutation_p.S124R|SLA_uc011ljg.1_Missense_Mutation_p.S205R|SLA_uc011ljd.1_Missense_Mutation_p.S272R	NM_001045556	NP_001039021	Q13239	SLAP1_HUMAN	Src-like-adaptor isoform a	232	SLA C-terminal.					endosome	SH3/SH2 adaptor activity			lung(1)|liver(1)	2	all_epithelial(106;3.51e-21)|Lung NSC(106;4.24e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0279)|Breast(495;0.037)	BRCA - Breast invasive adenocarcinoma(115;0.000701)			GAGGCAATGCTCTCTCGAAGG	0.532													7	99	---	---	---	---	0	0	0.139131	0	0
GPT	2875	broad.mit.edu	37	8	145731945	145731945	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr8:145731945A>G	uc011lli.1	+	10	1350	c.1193A>G	c.(1192-1194)AAT>AGT	p.N398S	GPT_uc003zdh.3_Missense_Mutation_p.N398S|MFSD3_uc003zdi.1_5'Flank	NM_005309	NP_005300	P24298	ALAT1_HUMAN	glutamic pyruvate transaminase	398					gluconeogenesis	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|central_nervous_system(1)	2	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)		L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CAGGTCTTCAATGAGGCTCCT	0.692													5	9	---	---	---	---	0	0	0.029380	0	0
PTGES	9536	broad.mit.edu	37	9	132511009	132511009	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr9:132511009G>A	uc004byi.2	-	2	187	c.134C>T	c.(133-135)GCC>GTC	p.A45V	PTGES_uc010myy.2_RNA|PTGES_uc004byj.2_Missense_Mutation_p.A45V	NM_004878	NP_004869	O14684	PTGES_HUMAN	prostaglandin E synthase	45	Cytoplasmic.				prostaglandin biosynthetic process|signal transduction	integral to membrane|membrane fraction	glutathione binding|prostaglandin-E synthase activity			skin(1)	1		Ovarian(14;0.00556)				CTCGGGGTTGGCAAAGGCCTG	0.592													3	51	---	---	---	---	0	0	0.115264	0	0
ABCB7	22	broad.mit.edu	37	X	74332769	74332769	+	Silent	SNP	A	G	G			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chrX:74332769A>G	uc004eca.2	-	3	310	c.285T>C	c.(283-285)TGT>TGC	p.C95C	ABCB7_uc004ebz.2_Silent_p.C96C|ABCB7_uc011mqn.1_Silent_p.C69C|ABCB7_uc010nls.2_Silent_p.C96C|ABCB7_uc010nlt.2_Silent_p.C95C	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	95					cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						GACCATGCCAACATGTCCTCT	0.438													9	244	---	---	---	---	0	0	0.069234	0	0
Unknown	0	broad.mit.edu	37	1	19314274	19314277	+	IGR	DEL	GAAA	-	-	rs72498264		TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr1:19314274_19314277delGAAA								IFFO2 (31448 upstream) : UBR4 (84327 downstream)																							aggaaggaaggaaagaaggaagga	0.191													2	4	---	---	---	---					
MEN1	4221	broad.mit.edu	37	11	64575515	64575515	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr11:64575515delG	uc001obj.2	-	3	590	c.517delC	c.(517-519)CTGfs	p.L173fs	MEN1_uc001obk.2_Frame_Shift_Del_p.L173fs|MEN1_uc001obl.2_Frame_Shift_Del_p.L168fs|MEN1_uc001obm.2_Frame_Shift_Del_p.L168fs|MEN1_uc001obn.2_Frame_Shift_Del_p.L173fs|MEN1_uc001obo.2_Frame_Shift_Del_p.L173fs|MEN1_uc001obp.2_Frame_Shift_Del_p.L168fs|MEN1_uc001obq.2_Frame_Shift_Del_p.L173fs|MEN1_uc001obr.2_Frame_Shift_Del_p.L173fs	NM_130800	NP_570712	O00255	MEN1_HUMAN	menin isoform 1	173			L -> P (in MEN1).|Missing (in MEN1).		DNA repair|histone lysine methylation|MAPKKK cascade|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of JNK cascade|negative regulation of osteoblast differentiation|negative regulation of protein phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of telomerase activity|negative regulation of transcription from RNA polymerase II promoter|osteoblast development|positive regulation of protein binding|positive regulation of transforming growth factor beta receptor signaling pathway|response to gamma radiation|response to UV|transcription, DNA-dependent	chromatin|cleavage furrow|cytosol|histone methyltransferase complex|nuclear matrix|soluble fraction	double-stranded DNA binding|four-way junction DNA binding|protein binding, bridging|protein N-terminus binding|R-SMAD binding|transcription regulatory region DNA binding|Y-form DNA binding			parathyroid(105)|pancreas(64)|gastrointestinal_tract_(site_indeterminate)(15)|small_intestine(13)|lung(9)|pituitary(7)|NS(7)|adrenal_gland(5)|soft_tissue(4)|central_nervous_system(4)|thymus(2)|stomach(1)|retroperitoneum(1)|skin(1)	238						CGGAGACCCAGGGCCTGGCAG	0.602			D|Mis|N|F|S		parathyroid tumors|Pancreatic neuroendocrine tumors	parathyroid adenoma|pituitary adenoma|pancreatic islet cell|carcinoid			Hyperparathyroidism_Familial_Isolated|Multiple_Endocrine_Neoplasia_type_1				21	41	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	31652509	31652516	+	IGR	DEL	AAGGAAGA	-	-	rs148041842	by1000genomes	TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr13:31652509_31652516delAAGGAAGA								C13orf26 (103358 upstream) : HSPH1 (58249 downstream)																							ggaaggaaggaaggaagaaagaaagaaa	0.192													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	90902014	90902015	+	IGR	INS	-	A	A	rs143996596	by1000genomes	TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr13:90902014_90902015insA								MIR622 (18483 upstream) : LOC144776 (641193 downstream)																							gtgagagaaagaaggaaggaag	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	71311230	71311231	+	IGR	DEL	TG	-	-	rs151138464		TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr14:71311230_71311231delTG								MAP3K9 (35342 upstream) : PCNX (62891 downstream)																							cccacatctttgtgtgtgtgtg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	89277678	89277679	+	IGR	INS	-	C	C			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr14:89277678_89277679insC								EML5 (18521 upstream) : TTC8 (12818 downstream)																							gatgtaaccatccttttttccc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	51823076	51823077	+	IGR	INS	-	TGTGTGTT	TGTGTGTT	rs9303340	by1000genomes	TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr17:51823076_51823077insTGTGTGTT								None (None upstream) : KIF2B (77162 downstream)																							gtgtgtgtgtgtgtgtgtTGAA	0.267													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	66198805	66198806	+	IGR	INS	-	AGGAAGGT	AGGAAGGT	rs2849828	by1000genomes	TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr18:66198805_66198806insAGGAAGGT								None (None upstream) : TMX3 (142121 downstream)																							ggaaggaaggaaggtaggtaga	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	15578651	15578653	+	IGR	DEL	TCC	-	-	rs140423177	by1000genomes	TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr19:15578651_15578653delTCC								RASAL3 (3269 upstream) : PGLYRP2 (806 downstream)																							tttttttttttccttccttcctt	0.074													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	45036669	45036669	+	IGR	DEL	A	-	-			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr19:45036669delA								CEACAM20 (3121 upstream) : CEACAM22P (4376 downstream)																							aaggaaggagaaaaaaaaAAG	0.020													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	36109007	36109010	+	IGR	DEL	TTCC	-	-			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr20:36109007_36109010delTTCC								SRC (75188 upstream) : BLCAP (36810 downstream)																							ccttccttctttccttccttcctt	0.000													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	142895155	142895155	+	IGR	DEL	C	-	-			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr3:142895155delC								CHST2 (53345 upstream) : SLC9A9 (88910 downstream)																							GGCCTCAGGGCCCCCCCCCAG	0.746													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	75468290	75468291	+	IGR	INS	-	AAGG	AAGG	rs71685977		TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr6:75468290_75468291insAAGG								CD109 (930250 upstream) : COL12A1 (325752 downstream)																							aggaagaaagaaagaaagaaag	0.173													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	134707229	134707229	+	IGR	DEL	A	-	-			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr6:134707229delA								SGK1 (68033 upstream) : ALDH8A1 (531300 downstream)																							ggaaggaaggaaaaaaaaaaa	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	65082885	65082886	+	IGR	DEL	AT	-	-	rs67619741		TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr7:65082885_65082886delAT								ZNF92 (216888 upstream) : INTS4L2 (29891 downstream)																							ATGCatatgcatatatatatat	0.173													2	4	---	---	---	---					
TEX15	56154	broad.mit.edu	37	8	30695491	30695491	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr8:30695491delT	uc003xil.2	-	3	7160	c.7160delA	c.(7159-7161)AAGfs	p.K2387fs		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2387										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CATTTCAACCTTTTTTGGCGT	0.388													7	323	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	70117581	70117581	+	IGR	DEL	G	-	-			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr9:70117581delG								LOC100133920 (452632 upstream) : FOXD4L5 (58128 downstream)																							GGTCTTCAGAGGTTTACCCTC	0.308													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	90460050	90460051	+	IGR	DEL	GA	-	-			TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chr9:90460050_90460051delGA								CTSL3 (58251 upstream) : C9orf79 (37690 downstream)																							tgtgtgtgtgGATATCAGCTTT	0.302													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	95229661	95229665	+	IGR	DEL	ACACA	-	-	rs140951088		TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chrX:95229661_95229665delACACA								MIR548M (911436 upstream) : LOC643486 (362421 downstream)																							acacacacacacacacacacacact	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	126864185	126864189	+	IGR	DEL	TTTAA	-	-	rs72147289		TCGA-BJ-A0ZE-01A-11D-A10S-08	TCGA-BJ-A0ZE-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	351bea69-3247-4c7f-914f-72722a03545b	a9dbff9f-6e45-4f3f-939d-34c7a4a29b3f	g.chrX:126864185_126864189delTTTAA								CXorf64 (908419 upstream) : ACTRT1 (320754 downstream)																							TTATTTTCTTTTTAATTTTTCTACT	0.151													3	3	---	---	---	---					
