Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C10orf12	26148	broad.mit.edu	37	10	98742786	98742786	+	Missense_Mutation	SNP	A	G	G			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr10:98742786A>G	uc001kmv.2	+	1	1746	c.1639A>G	c.(1639-1641)AAA>GAA	p.K547E		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	547										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AAAACGTTCAAAAAAAGAAGG	0.443000													8	54	---	---	---	---	0	0	0.047766	0	0
C10orf119	79892	broad.mit.edu	37	10	121612707	121612707	+	Splice_Site	SNP	G	A	A	rs111837774		TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr10:121612707G>A	uc001ler.2	-	6	728	c.430_splice	c.e6-1	p.A144_splice	C10orf119_uc001leq.1_Splice_Site|C10orf119_uc001les.1_Intron|C10orf119_uc001let.1_Splice_Site	NM_024834	NP_079110	Q9BTE3	MCMBP_HUMAN	chromosome 10 open reading frame 119						cell division|DNA-dependent DNA replication|mitosis|S phase of mitotic cell cycle|sister chromatid cohesion	nucleus	chromatin binding				0		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.0044)		TAACATAGGCGTTAAACGAAA	0.363000													10	80	---	---	---	---	0	0	0.069234	0	0
CCDC89	220388	broad.mit.edu	37	11	85396623	85396623	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr11:85396623T>C	uc001pau.1	-	1	698	c.551A>G	c.(550-552)GAG>GGG	p.E184G		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	184	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				AGTGAGGGCCTCACACCGGAC	0.587000													3	147	---	---	---	---	0	0	0.115264	0	0
SAP18	10284	broad.mit.edu	37	13	21721465	21721465	+	Missense_Mutation	SNP	G	A	A			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr13:21721465G>A	uc001uns.2	+	4	542	c.503G>A	c.(502-504)CGC>CAC	p.R168H		NM_005870	NP_005861	O00422	SAP18_HUMAN	Sin3A-associated protein, 18kDa	149					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|plasma membrane	protein binding|transcription corepressor activity				0		all_cancers(29;2.16e-20)|all_epithelial(30;2.97e-18)|all_lung(29;4.58e-16)|Lung SC(185;0.0262)|Breast(139;0.147)		all cancers(112;9.79e-05)|Epithelial(112;0.000292)|OV - Ovarian serous cystadenocarcinoma(117;0.00276)|Lung(94;0.0941)		CCTTCAGGGCGCATGAGACCA	0.403000													4	117	---	---	---	---	0	0	0.150653	0	0
ADAM6	8755	broad.mit.edu	37	14	107062360	107062360	+	RNA	SNP	A	G	G			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr14:107062360A>G	uc010tyt.1	-	131		c.6235T>C								Parts of antibodies, mostly variable regions.												0						GACAGCGCAGATGAGGGACAG	0.612000													4	56	---	---	---	---	0	0	0.021553	0	0
ZNF677	342926	broad.mit.edu	37	19	53740670	53740670	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr19:53740670C>T	uc002qbf.1	-	5	1495	c.1310G>A	c.(1309-1311)GGC>GAC	p.G437D	ZNF677_uc002qbg.1_Missense_Mutation_p.G437D	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	437	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		AAAAGCCCTGCCACACACATT	0.368000													3	34	---	---	---	---	0	0	0.115264	0	0
FAM86D	692099	broad.mit.edu	37	3	75475719	75475719	+	Silent	SNP	C	G	G			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr3:75475719C>G	uc003dpp.3	-	7	878	c.519G>C	c.(517-519)TCG>TCC	p.S173S	FAM86D_uc003dpo.3_RNA|FAM86D_uc003dps.3_RNA|FAM86D_uc003dpq.3_Silent_p.S81S|FAM86D_uc003dpr.3_RNA	NR_024241				RecName: Full=Protein FAM86B1;												0						TCCCGACCAGCGACACGATGG	0.572000													3	46	---	---	---	---	0	0	0.150653	0	0
ANKRD17	26057	broad.mit.edu	37	4	73957562	73957562	+	Missense_Mutation	SNP	G	A	A			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr4:73957562G>A	uc003hgp.2	-	29	5900	c.5783C>T	c.(5782-5784)CCT>CTT	p.P1928L	ANKRD17_uc003hgo.2_Missense_Mutation_p.P1815L|ANKRD17_uc003hgq.2_Missense_Mutation_p.P1677L|ANKRD17_uc003hgr.2_Missense_Mutation_p.P1927L	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	1928					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGGCCTGACAGGAAACGGACC	0.532000													3	89	---	---	---	---	0	0	0.115264	0	0
CYP2U1	113612	broad.mit.edu	37	4	108866315	108866315	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr4:108866315C>T	uc003hyp.2	+	2	763	c.680C>T	c.(679-681)GCC>GTC	p.A227V	CYP2U1_uc011cfi.1_Missense_Mutation_p.A18V	NM_183075	NP_898898	Q7Z449	CP2U1_HUMAN	cytochrome P450, family 2, subfamily U,	227					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000128)		ATCAGCAATGCCGTCTCTAAC	0.438000													4	76	---	---	---	---	0	0	0.150653	0	0
RAI14	26064	broad.mit.edu	37	5	34811917	34811917	+	Silent	SNP	G	A	A			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr5:34811917G>A	uc003jir.2	+	9	799	c.603G>A	c.(601-603)GTG>GTA	p.V201V	RAI14_uc010iur.2_Silent_p.V201V|RAI14_uc011coj.1_Silent_p.V201V|RAI14_uc010ius.1_Silent_p.V130V|RAI14_uc003jis.2_Silent_p.V204V|RAI14_uc003jit.2_Silent_p.V201V|RAI14_uc011cok.1_Silent_p.V193V	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	201	ANK 6.					cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					CTAACGCTGTGGAAGCCTTAA	0.378000													7	52	---	---	---	---	0	0	0.058154	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121651637	121651637	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr7:121651637C>T	uc003vjy.2	+	12	2932	c.2537C>T	c.(2536-2538)ACT>ATT	p.T846I	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	846	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CCACAAGTTACTTCAGCTACC	0.473000													8	126	---	---	---	---	0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	1	100288394	100288396	+	IGR	DEL	AAG	-	-			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr1:100288394_100288396delAAG								FRRS1 (57045 upstream) : AGL (27244 downstream)																							ACTGTAAAGAAAGAAGAAGtacc	0.148													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	94771661	94771661	+	IGR	DEL	A	-	-			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr11:94771661delA								KDM4DL (10901 upstream) : SFRS2B (28395 downstream)																							GGACTTGGGGAAAAGGACTCC	0.488													2	4	---	---	---	---					
MLEC	9761	broad.mit.edu	37	12	121134166	121134168	+	In_Frame_Del	DEL	GAA	-	-			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr12:121134166_121134168delGAA	uc001tyy.1	+	5	848_850	c.697_699delGAA	c.(697-699)GAAdel	p.E238del		NM_014730	NP_055545	Q14165	MLEC_HUMAN	malectin precursor	238	Poly-Glu.|Lumenal (Potential).				post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	carbohydrate binding			ovary(1)	1						gaaagaagaggaagaagaagaag	0.404													7	172	---	---	---	---					
KIAA0182	23199	broad.mit.edu	37	16	85682289	85682290	+	Frame_Shift_Ins	INS	-	C	C			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr16:85682289_85682290insC	uc002fix.2	+	3	432_433	c.358_359insC	c.(358-360)ACCfs	p.T120fs	KIAA0182_uc002fiw.2_Frame_Shift_Ins_p.T16fs|KIAA0182_uc002fiy.2_Frame_Shift_Ins_p.T47fs	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	120							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						CGTGCCCAGCACCCCCCCCGTG	0.688													8	81	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684394	26684395	+	Splice_Site	INS	-	G	G	rs113730440		TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr17:26684394_26684395insG	uc002haz.2	-	2	210	c.78_splice	c.e2+1	p.W26_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AGAGCGGCTTTGCCACCGGGCC	0.762													3	6	---	---	---	---					
LOC644936	644936	broad.mit.edu	37	5	79598394	79598394	+	5'Flank	DEL	A	-	-			TCGA-CE-A27D-01A-11D-A16O-08	TCGA-CE-A27D-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	75dad729-7b44-4b6d-b01f-cbcf57244b77	25cd0ba4-5250-45ac-96b5-e16b21a252f8	g.chr5:79598394delA	uc010jai.2	-							NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						cttttaaaggaaaaaaaaaaa	0.204													3	5	---	---	---	---					
