Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLCE1	51196	broad.mit.edu	37	10	96066243	96066243	+	Silent	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr10:96066243C>T	uc001kjk.2	+	26	6316	c.5682C>T	c.(5680-5682)GTC>GTT	p.V1894V	PLCE1_uc010qnx.1_Silent_p.V1878V|PLCE1_uc001kjm.2_Silent_p.V1586V|PLCE1_uc001kjp.2_Silent_p.V252V	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1894	C2.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GCATTGAAGTCGACGTCCTGG	0.537													29	183	---	---	---	---	0	0	0.027356	0	0
LOC653544	653544	broad.mit.edu	37	10	135491173	135491173	+	Missense_Mutation	SNP	G	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr10:135491173G>T	uc010qvi.1	+	1	895	c.784G>T	c.(784-786)GCT>TCT	p.A262S		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	262						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGCGCCTGGGGCTCTCCCACA	0.776													3	8	---	---	---	---	6.4e-05	7.17576e-05	0.004672	1	0
TMX2	51075	broad.mit.edu	37	11	57506197	57506197	+	Missense_Mutation	SNP	A	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr11:57506197A>T	uc001nlc.1	+	5	552	c.503A>T	c.(502-504)AAT>ATT	p.N168I	CTNND1_uc001nlf.1_Intron|TMX2_uc001nld.1_Missense_Mutation_p.N74I|TMX2_uc001nle.1_Missense_Mutation_p.N130I|C11orf31_uc010rjx.1_5'Flank	NM_015959	NP_057043	Q9Y320	TMX2_HUMAN	thioredoxin domain containing 14 isoform 1	168	Cytoplasmic (Potential).|Thioredoxin.				cell redox homeostasis	integral to membrane					0						AATTGGTCTAATGACTGCCAA	0.488													5	299	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	11	113661349	113661349	+	RNA	SNP	A	G	G	rs1713675	by1000genomes	TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr11:113661349A>G	uc001pof.1	+	1		c.1397A>G								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		GGGTATAGATAACCTGGAAAC	0.478													4	174	---	---	---	---	0	0	0.009096	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18499700	18499700	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr12:18499700C>T	uc001rdt.2	+	11	1671	c.1555C>T	c.(1555-1557)CCC>TCC	p.P519S	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.P519S|PIK3C2G_uc010sic.1_Missense_Mutation_p.P297S	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	519					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CTATCTAAATCCCGGGCTTCC	0.448													41	57	---	---	---	---	0	0	0.027894	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713736	70713736	+	Silent	SNP	A	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr14:70713736A>T	uc010ttg.1	-	1	783	c.132T>A	c.(130-132)GTT>GTA	p.V44V		NR_003951				SubName: Full=ADAM21-like protein;												0						GGTTCACCACAACAACGAGCT	0.438													5	194	---	---	---	---	0	0	0.020292	0	0
ADAM21	8747	broad.mit.edu	37	14	70924858	70924858	+	Silent	SNP	T	A	A			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr14:70924858T>A	uc001xmd.2	+	1	642	c.642T>A	c.(640-642)GTT>GTA	p.V214V		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	214	Peptidase M12B.|Extracellular (Potential).|Poly-Val.				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		AGCTAGTTGTTGTGGTGAACC	0.433													71	79	---	---	---	---	0	0	0.014410	0	0
BATF	10538	broad.mit.edu	37	14	76012817	76012817	+	Silent	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr14:76012817C>T	uc001xrr.2	+	3	423	c.181C>T	c.(181-183)CTG>TTG	p.L61L		NM_006399	NP_006390	Q16520	BATF_HUMAN	basic leucine zipper transcription factor,	61	Leucine-zipper.					nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.028)		GAGCGAAGACCTGGAGAAACA	0.597													7	65	---	---	---	---	0	0	0.003080	0	0
PRSS8	5652	broad.mit.edu	37	16	31144049	31144049	+	Silent	SNP	G	A	A			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr16:31144049G>A	uc002ebc.3	-	4	824	c.492C>T	c.(490-492)AAC>AAT	p.N164N	PRSS8_uc010vfe.1_Silent_p.N110N	NM_002773	NP_002764	Q16651	PRSS8_HUMAN	prostasin preproprotein	164	Peptidase S1.				proteolysis	extracellular space|integral to membrane|plasma membrane	serine-type endopeptidase activity				0						AGTGGAGGCCGTTGGGGAAGG	0.652													4	139	---	---	---	---	0	0	0.014758	0	0
SLC46A1	113235	broad.mit.edu	37	17	26733056	26733056	+	Missense_Mutation	SNP	T	G	G			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr17:26733056T>G	uc002hbf.1	-	1	173	c.77A>C	c.(76-78)GAG>GCG	p.E26A	SLC46A1_uc002hbg.1_Missense_Mutation_p.E26A|SLC46A1_uc010wak.1_Missense_Mutation_p.E26A	NM_080669	NP_542400	Q96NT5	PCFT_HUMAN	proton-coupled folate transporter	26					cellular iron ion homeostasis|folic acid metabolic process	apical plasma membrane|cytoplasm|integral to membrane	folic acid binding|folic acid transporter activity|heme transporter activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Folic Acid(DB00158)	GACCAGCGGCTCTACCGGGCC	0.716													6	9	---	---	---	---	0	0	0.003080	0	0
CCL23	6368	broad.mit.edu	37	17	34340319	34340319	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr17:34340319C>T	uc002hkt.1	-	4	352	c.281G>A	c.(280-282)TGT>TAT	p.C94Y	CCL23_uc002hks.1_Missense_Mutation_p.C111Y	NM_145898	NP_665905	P55773	CCL23_HUMAN	small inducible cytokine A23 isoform CKbeta8	94					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response|negative regulation of cell proliferation	extracellular space	chemokine activity|heparin binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)	Treprostinil(DB00374)	GGGGTTGGCACAGAAACGTCG	0.522													20	24	---	---	---	---	0	0	0.012319	0	0
ZNF737	100129842	broad.mit.edu	37	19	20727618	20727618	+	Missense_Mutation	SNP	G	C	C			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr19:20727618G>C	uc002npa.2	-	4	1571	c.1391C>G	c.(1390-1392)TCG>TGG	p.S464W		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	464					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GTGTGAGGACGAGTTGAAGGC	0.423													3	125	---	---	---	---	0	0	0.004672	0	0
GLTSCR2	29997	broad.mit.edu	37	19	48254336	48254336	+	Silent	SNP	G	A	A			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr19:48254336G>A	uc002phm.2	+	4	594	c.570G>A	c.(568-570)CGG>CGA	p.R190R	GLTSCR2_uc002phk.2_Silent_p.R190R|GLTSCR2_uc002phl.2_Silent_p.R190R|GLTSCR2_uc010elj.2_Silent_p.R190R|GLTSCR2_uc010elk.1_5'Flank	NM_015710	NP_056525	Q9NZM5	GSCR2_HUMAN	glioma tumor suppressor candidate region gene 2	190				RRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAKPGPQD TVERP -> SGRSSYGRSWPSRASSPGGAQGPSPVAQPFCN KGPNPAPGHRIAA (in Ref. 3; AAG30413).		nucleolus				central_nervous_system(1)	1		all_cancers(25;1.47e-06)|all_lung(116;6.89e-05)|all_epithelial(76;0.000108)|Lung NSC(112;0.000117)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000301)|OV - Ovarian serous cystadenocarcinoma(262;0.00031)|Epithelial(262;0.0149)|GBM - Glioblastoma multiforme(486;0.0278)		CCGTAGAGCGGCCCTTCTACG	0.537													11	16	---	---	---	---	0	0	0.024245	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736373	56736373	+	Missense_Mutation	SNP	A	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr19:56736373A>T	uc002qmq.2	-	2	209	c.43T>A	c.(43-45)TGC>AGC	p.C15S	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.C15S|ZSCAN5A_uc002qms.1_Missense_Mutation_p.C15S	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	15					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGTCTGTTGCAGGATTCTCCT	0.468													8	99	---	---	---	---	0	0	0.003080	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612													2	12	---	---	---	---	0	0	0.004672	0	0
TREX1	11277	broad.mit.edu	37	3	48508560	48508560	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr3:48508560C>G	uc003ctj.2	+	2	1928	c.671C>G	c.(670-672)TCA>TGA	p.S224*	TREX1_uc010hjy.2_Nonsense_Mutation_p.S169*|TREX1_uc003ctk.2_Nonsense_Mutation_p.S30*|TREX1_uc010hjz.2_Nonsense_Mutation_p.S169*|TREX1_uc010hka.2_Nonsense_Mutation_p.S224*	NM_033629	NP_338599	Q9NSU2	TREX1_HUMAN	three prime repair exonuclease 1 isoform b	224					cell death|DNA recombination|DNA replication|mismatch repair	nuclear envelope	3'-5'-exodeoxyribonuclease activity|exodeoxyribonuclease III activity|metal ion binding|MutLalpha complex binding|MutSalpha complex binding|protein homodimerization activity|single-stranded DNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000286)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		AGCAGCCCCTCAGAACACGGC	0.612								Direct_reversal_of_damage|Editing_and_processing_nucleases					3	99	---	---	---	---	0	0	0.004672	0	0
SLC6A18	348932	broad.mit.edu	37	5	1232375	1232375	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr5:1232375G>A	uc003jby.1	+	2	325	c.202G>A	c.(202-204)GGG>AGG	p.G68R		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	68	Helical; Name=2; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGTCTTCGAGGGGATCCCCAT	0.687													20	16	---	---	---	---	0	0	0.024334	0	0
SLC6A3	6531	broad.mit.edu	37	5	1443103	1443103	+	Silent	SNP	G	C	C			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr5:1443103G>C	uc003jck.2	-	2	331	c.210C>G	c.(208-210)CTC>CTG	p.L70L		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	70	Helical; Name=1; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	TGACGGACAGGAGAAAGTCGA	0.612													4	121	---	---	---	---	0	0	0.009096	0	0
DNAJC21	134218	broad.mit.edu	37	5	34954066	34954066	+	Missense_Mutation	SNP	T	C	C			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr5:34954066T>C	uc003jjc.2	+	11	1621	c.1394T>C	c.(1393-1395)ATG>ACG	p.M465T	DNAJC21_uc003jjb.2_Missense_Mutation_p.M510T|DNAJC21_uc010iuu.1_Missense_Mutation_p.M362T	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	465					protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			ACCAAAGATATGAAAAAACCT	0.318													4	127	---	---	---	---	0	0	0.014758	0	0
PCSK1	5122	broad.mit.edu	37	5	95748058	95748058	+	Silent	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr5:95748058C>T	uc003kls.1	-	7	1052	c.846G>A	c.(844-846)CGG>CGA	p.R282R	PCSK1_uc010jbi.1_Silent_p.R43R	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	282	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCTGGGCTAGCCGGCCAGGCC	0.478													4	127	---	---	---	---	0	0	0.014758	0	0
FNIP1	96459	broad.mit.edu	37	5	131008166	131008166	+	Silent	SNP	T	C	C			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr5:131008166T>C	uc003kvs.1	-	14	2113	c.1971A>G	c.(1969-1971)GAA>GAG	p.E657E	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Silent_p.E629E|FNIP1_uc010jdm.1_Silent_p.E612E	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	657					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		CAGCATTTTCTTCTTGGCAGT	0.393													11	323	---	---	---	---	0	0	0.008291	0	0
MATR3	9782	broad.mit.edu	37	5	138643134	138643134	+	Silent	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr5:138643134C>T	uc003ldu.2	+	5	457	c.30C>T	c.(28-30)CTC>CTT	p.L10L	MATR3_uc003lds.2_Silent_p.L10L|MATR3_uc010jfb.2_Silent_p.L10L|MATR3_uc003ldt.2_Intron|MATR3_uc003ldw.2_Silent_p.L10L|MATR3_uc003ldx.2_Silent_p.L10L|MATR3_uc010jfc.2_Silent_p.L10L|MATR3_uc003ldy.2_Intron|MATR3_uc011czb.1_Intron|MATR3_uc003ldz.2_Silent_p.L10L|MATR3_uc003lea.2_Silent_p.L10L	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	10						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			AGTCATCTCTCAGTAGGGACT	0.423													8	193	---	---	---	---	0	0	0.003080	0	0
GRB10	2887	broad.mit.edu	37	7	50674044	50674044	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr7:50674044G>A	uc003tpi.2	-	11	1293	c.1262C>T	c.(1261-1263)TCG>TTG	p.S421L	GRB10_uc003tph.3_Missense_Mutation_p.S363L|GRB10_uc003tpj.2_Missense_Mutation_p.S375L|GRB10_uc003tpk.2_Missense_Mutation_p.S421L|GRB10_uc010kzb.2_Missense_Mutation_p.S363L|GRB10_uc003tpl.2_Missense_Mutation_p.S415L|GRB10_uc003tpm.2_Missense_Mutation_p.S363L|GRB10_uc003tpn.2_Missense_Mutation_p.S363L	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	421					insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					CACTGGCGTCGAGAACGGGGA	0.527									Russell-Silver_syndrome				10	209	---	---	---	---	0	0	0.008291	0	0
MAGI2	9863	broad.mit.edu	37	7	77973161	77973161	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr7:77973161C>T	uc003ugx.2	-	9	1596	c.1342G>A	c.(1342-1344)GAG>AAG	p.E448K	MAGI2_uc003ugy.2_Missense_Mutation_p.E448K|MAGI2_uc010ldx.1_Missense_Mutation_p.E57K|MAGI2_uc010ldy.1_Missense_Mutation_p.E57K|MAGI2_uc011kgr.1_Missense_Mutation_p.E280K|MAGI2_uc011kgs.1_Missense_Mutation_p.E285K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	448	PDZ 2.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGCAGAAACTCATCAGGCTCG	0.473													43	55	---	---	---	---	0	0	0.013114	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				58	77	---	---	---	---	0	0	0.014410	0	0
DMRT3	58524	broad.mit.edu	37	9	990617	990617	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr9:990617C>T	uc003zgw.1	+	2	1069	c.1031C>T	c.(1030-1032)GCC>GTC	p.A344V		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	344					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		AGGTTTTCTGCCGACTCTAGC	0.582													4	158	---	---	---	---	0	0	0.014758	0	0
PDK3	5165	broad.mit.edu	37	X	24483609	24483609	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chrX:24483609C>T	uc004dbg.2	+	1	266	c.37C>T	c.(37-39)CCC>TCC	p.P13S	PDK3_uc004dbh.2_Missense_Mutation_p.P13S	NM_005391	NP_005382	Q15120	PDK3_HUMAN	pyruvate dehydrogenase kinase 3 isoform 2	13					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|protein binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						GCAGCCGGTGCCCAAGCAGAT	0.687													8	16	---	---	---	---	0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	1	36872302	36872305	+	IGR	DEL	TTCC	-	-	rs28542712		TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr1:36872302_36872305delTTCC								LSM10 (8809 upstream) : OSCP1 (11203 downstream)																							ctttctttctttccttccttcctt	0.034													2	4	---	---	---	---					
MTX1	4580	broad.mit.edu	37	1	155178692	155178695	+	Frame_Shift_Del	DEL	CAGA	-	-			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr1:155178692_155178695delCAGA	uc001fjb.2	+	1	203_206	c.97_100delCAGA	c.(97-102)CAGACCfs	p.Q33fs	RAG1AP1_uc010pey.1_Intron|THBS3_uc001fix.2_5'Flank|THBS3_uc009wqi.2_5'Flank|THBS3_uc001fiz.2_5'Flank|THBS3_uc001fiy.2_5'Flank|THBS3_uc010pfu.1_5'Flank|THBS3_uc010pfv.1_5'Flank|THBS3_uc001fja.2_Intron|THBS3_uc009wqj.1_Intron|MTX1_uc001fjc.2_Frame_Shift_Del_p.Q33fs	NM_002455	NP_002446	Q13505	MTX1_HUMAN	metaxin 1 isoform 1	33_34					protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane	protein binding			skin(1)	1	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CAAGAGCCCCCAGACCTGGCCCAG	0.711													12	32	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	44336453	44336454	+	IGR	INS	-	T	T			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr11:44336453_44336454insT								ALX4 (4737 upstream) : CD82 (250687 downstream)																							cttttccttccttccttccttc	0.025													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	25031526	25031526	+	IGR	DEL	A	-	-			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr16:25031526delA								ARHGAP17 (4851 upstream) : LCMT1 (91521 downstream)																							ggaaggaaggaaggaaggaag	0.179													2	4	---	---	---	---					
EIF2AK3	9451	broad.mit.edu	37	2	88874269	88874270	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr2:88874269_88874270delCT	uc002stc.3	-	13	2933_2934	c.2731_2732delAG	c.(2731-2733)AGGfs	p.R911fs		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	911	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						ACACACGCTCCTCTCTCTCTCC	0.465													10	208	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	56112802	56112809	+	IGR	DEL	CTTCCTTC	-	-	rs138258377	by1000genomes	TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr20:56112802_56112809delCTTCCTTC								CTCFL (12094 upstream) : PCK1 (23328 downstream)																							CACAGGTTCtcttccttccttccttcct	0.192													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9676853	9676854	+	IGR	INS	-	GT	GT			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr21:9676853_9676854insGT								None (None upstream) : None (None downstream)																							taatatataccgtgtgtgtgtg	0.010													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	40499416	40499419	+	IGR	DEL	TTTG	-	-	rs9753785		TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr21:40499416_40499419delTTTG								ETS2 (302540 upstream) : PSMG1 (47971 downstream)																							ttttttttgttttgttttgttttt	0.309													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	111260223	111260224	+	IGR	DEL	CC	-	-	rs143253022	by1000genomes	TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr4:111260223_111260224delCC								ELOVL6 (140403 upstream) : ENPEP (137005 downstream)																							ttccttccttccccttccttcc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58777355	58777356	+	IGR	DEL	CT	-	-	rs71218087		TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr6:58777355_58777356delCT								GUSBL2 (489631 upstream) : None (None downstream)																							ttttgaaacactctttttgtaa	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	53445021	53445022	+	IGR	DEL	TG	-	-	rs144474239		TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr7:53445021_53445022delTG								POM121L12 (340404 upstream) : HPVC1 (823895 downstream)																							AGTGTGCCTCtgtgtgtgtgtg	0.282													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	150311028	150311029	+	IGR	INS	-	CTCTAT	CTCTAT	rs141505392	by1000genomes	TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr7:150311028_150311029insCTCTAT								GIMAP4 (39988 upstream) : GIMAP6 (11437 downstream)																							tctctatttacctctatctcta	0.094													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	127426641	127426641	+	IGR	DEL	C	-	-			TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr8:127426641delC								TRIB1 (975999 upstream) : FAM84B (138046 downstream)																							tctttcttttctttctttctt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	142545229	142545229	+	IGR	DEL	G	-	-	rs35705831		TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr8:142545229delG								FLJ43860 (27899 upstream) : MIR1302-7 (322374 downstream)																							CGGATGGGATGGATGGGACGG	0.617													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	133834193	133834195	+	IGR	DEL	AGA	-	-	rs141449694	by1000genomes	TCGA-DE-A0Y3-01B-11D-A10S-08	TCGA-DE-A0Y3-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7dfcfe29-3900-4d7b-8067-60c51584b0b1	22898cc2-01f2-4e03-a2a5-a4c6f9f836ce	g.chr9:133834193_133834195delAGA								FIBCD1 (19738 upstream) : LAMC3 (50309 downstream)																							caccatcaccagaaccaccacca	0.000													2	4	---	---	---	---					
