Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
BCL9	607	broad.mit.edu	37	1	147091712	147091712	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr1:147091712G>T	uc001epq.2	+	8	2491	c.1751G>T	c.(1750-1752)AGA>ATA	p.R584I	BCL9_uc010ozr.1_Missense_Mutation_p.R510I	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	584	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CCTGCATCTAGACCAGGTCTT	0.552000			T	IGH@|IGL@	B-ALL								6	213					5.9392e-07	6.6816e-07	0.217242	1	0
NUMA1	4926	broad.mit.edu	37	11	71734181	71734181	+	Missense_Mutation	SNP	T	C	C	rs140051813	byFrequency	TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr11:71734181T>C	uc001orl.1	-	6	393	c.221A>G	c.(220-222)CAT>CGT	p.H74R	NUMA1_uc001ork.1_Missense_Mutation_p.H74R|NUMA1_uc001orm.1_Missense_Mutation_p.H74R|NUMA1_uc009ysx.1_Missense_Mutation_p.H74R|NUMA1_uc001oro.1_Missense_Mutation_p.H74R|NUMA1_uc009ysy.1_Missense_Mutation_p.H74R|NUMA1_uc001orp.2_Missense_Mutation_p.H74R|NUMA1_uc001orq.2_Missense_Mutation_p.H74R	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	74					G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						GGAAGAGGGATGTTTTCGATT	0.493000			T	RARA	APL								63	97					0	0	0.870114	0	0
C11orf63	79864	broad.mit.edu	37	11	122774973	122774973	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr11:122774973G>T	uc001pym.2	+	3	982	c.685G>T	c.(685-687)GTG>TTG	p.V229L	C11orf63_uc001pyl.1_Missense_Mutation_p.V229L	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	229										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		TTCTCCGTACGTGAAGAGCTC	0.512000													5	181					1.23904e-05	1.31192e-05	0.184627	1	0
SLC38A4	55089	broad.mit.edu	37	12	47168909	47168909	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr12:47168909A>T	uc001rpi.2	-	14	1621	c.1222T>A	c.(1222-1224)TTA>ATA	p.L408I	SLC38A4_uc001rpj.2_Missense_Mutation_p.L408I	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	408	Extracellular (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					GGGATGTCTAATGTATACACT	0.438000													60	95					0	0	0.870114	0	0
HPD	3242	broad.mit.edu	37	12	122292689	122292689	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr12:122292689C>T	uc001ubj.2	-	7	374	c.334G>A	c.(334-336)GAA>AAA	p.E112K	HPD_uc001ubk.2_Missense_Mutation_p.E73K	NM_002150	NP_002141	P32754	HPPD_HUMAN	4-hydroxyphenylpyruvate dioxygenase	112					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000105)|Epithelial(86;0.000352)|BRCA - Breast invasive adenocarcinoma(302;0.225)	Nitisinone(DB00348)	GCGCCCCGTTCCCGTGCTTTC	0.597000													55	65					0	0	0.870114	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453858	84453858	+	Silent	SNP	G	A	A			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr13:84453858G>A	uc001vlk.2	-	1	2671	c.1785C>T	c.(1783-1785)AAC>AAT	p.N595N		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	595	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		ACCCAGTGCTGTTTTTACTGT	0.542000													4	62					0	0	0.184627	0	0
NLRP1	22861	broad.mit.edu	37	17	5487102	5487102	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr17:5487102G>A	uc002gci.2	-	1	731	c.176C>T	c.(175-177)GCT>GTT	p.A59V	NLRP1_uc002gcg.1_Missense_Mutation_p.A59V|NLRP1_uc002gck.2_Missense_Mutation_p.A59V|NLRP1_uc002gcj.2_Missense_Mutation_p.A59V|NLRP1_uc002gcl.2_Missense_Mutation_p.A59V|NLRP1_uc002gch.3_Missense_Mutation_p.A59V|NLRP1_uc010clh.2_Missense_Mutation_p.A59V	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	59	DAPIN.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CCCATACTGAGCCACCAGGTA	0.637000													2	6					0	0	0.115264	0	0
MYO15A	51168	broad.mit.edu	37	17	18057452	18057452	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr17:18057452A>G	uc010vxh.1	+	43	8434	c.8096A>G	c.(8095-8097)TAC>TGC	p.Y2699C	MYO15A_uc010vxi.1_5'UTR|MYO15A_uc010vxj.1_5'UTR|MYO15A_uc010vxk.1_5'UTR	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2699	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CAGGTGTTTTACCCCAAGGAC	0.637000													4	108					0	0	0.184627	0	0
FCER2	2208	broad.mit.edu	37	19	7754305	7754305	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr19:7754305G>A	uc002mhn.2	-	11	924	c.740C>T	c.(739-741)CCA>CTA	p.P247L	FCER2_uc010xjs.1_Missense_Mutation_p.P169L|FCER2_uc010xjt.1_Missense_Mutation_p.P169L|FCER2_uc002mhm.2_Missense_Mutation_p.P247L	NM_002002	NP_001993	P06734	FCER2_HUMAN	Fc fragment of IgE, low affinity II, receptor	247	C-type lectin.|Extracellular (Potential).				positive regulation of killing of cells of other organism|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase activity	extracellular region|integral to plasma membrane	IgE binding|integrin binding|receptor activity|sugar binding				0						GGGCTCCCCTGGAGCCCAGTT	0.677000													10	7					0	0	0.361761	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010294	24010294	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr19:24010294C>G	uc002nrn.2	+	4	754	c.331C>G	c.(331-333)CAG>GAG	p.Q111E		NM_002295	NP_002286			ribosomal protein SA												0						CTTCACTAACCAGATCCAGGC	0.567000													4	53					0	0	0.184627	0	0
ZNF607	84775	broad.mit.edu	37	19	38190685	38190685	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr19:38190685C>A	uc002ohc.1	-	5	943	c.347G>T	c.(346-348)TGT>TTT	p.C116F	ZNF607_uc002ohb.1_Missense_Mutation_p.C115F	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	116	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			ACATTGCTTACACTCATATGG	0.368000													88	132					4.37026e-21	5.24431e-21	0.870114	1	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315689	73315689	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr2:73315689G>A	uc002siu.3	-	3	1298	c.1057C>T	c.(1057-1059)CGG>TGG	p.R353W	RAB11FIP5_uc002sit.3_Missense_Mutation_p.R275W	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	353					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						CTGCGGTGCCGCACAGGGCCC	0.627000													4	82					0	0	0.150653	0	0
FBXW7	55294	broad.mit.edu	37	4	153244232	153244232	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr4:153244232T>C	uc003ims.2	-	12	2074	c.1925A>G	c.(1924-1926)GAT>GGT	p.D642G	FBXW7_uc011cii.1_Missense_Mutation_p.D642G|FBXW7_uc003imt.2_Missense_Mutation_p.D642G|FBXW7_uc011cih.1_Missense_Mutation_p.D466G|FBXW7_uc003imq.2_Missense_Mutation_p.D562G|FBXW7_uc003imr.2_Missense_Mutation_p.D524G	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	642	WD 7.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				AGTTCCATCATCTGAGCTGGT	0.428000			Mis|N|D|F		colorectal|endometrial|T-ALL								17	125					0	0	0.500413	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				42	79					0	0	0.847076	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212809	26212809	+	Silent	SNP	G	A	A			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chrX:26212809G>A	uc004dbr.2	+	2	995	c.846G>A	c.(844-846)CTG>CTA	p.L282L	MAGEB6_uc010ngc.1_Silent_p.L62L	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	282	MAGE.									ovary(3)	3						ATAATGCGCTGCCGAAGTCGG	0.542000													8	250					0	0	0.278610	0	0
Unknown	0	broad.mit.edu	37	10	30900666	30900669	+	IGR	DEL	GAAA	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr10:30900666_30900669delGAAA								MAP3K8 (149905 upstream) : LYZL2 (40 downstream)																							gaaaagaaaggaaagaaagaaaga	0.118													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	37691088	37691088	+	IGR	DEL	C	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr10:37691088delC								ANKRD30A (169593 upstream) : ZNF248 (399359 downstream)																							ttccctccctccctctctccc	0.109													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	134206084	134206086	+	IGR	DEL	TGA	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr10:134206084_134206086delTGA								LRRC27 (11074 upstream) : PWWP2B (4616 downstream)																							atggtgatggtgatgatggtgat	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	111759853	111759853	+	IGR	DEL	T	-	-	rs150833390		TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr11:111759853delT								C11orf1 (5058 upstream) : CRYAB (19497 downstream)																							tctctctctcttttttttttt	0.144													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	80632597	80632598	+	IGR	DEL	TG	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr12:80632597_80632598delTG								PPP1R12A (303362 upstream) : PTPRQ (205528 downstream)																							TACACCTATTtgtgtgtgtgtg	0.302													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	40369522	40369529	+	IGR	DEL	GGAAGGAA	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr15:40369522_40369529delGGAAGGAA								SRP14 (38133 upstream) : BMF (10565 downstream)																							agggatggagggaaggaaggaaggaagg	0.053													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	100328703	100328704	+	IGR	INS	-	CTTC	CTTC	rs56252855		TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr15:100328703_100328704insCTTC								LYSMD4 (55077 upstream) : C15orf51 (1657 downstream)																							tccctccctttcttccttcctt	0.139													3	3	---	---	---	---					
BFAR	51283	broad.mit.edu	37	16	14761616	14761617	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr16:14761616_14761617delTT	uc002dco.2	+	8	1566_1567	c.1285_1286delTT	c.(1285-1287)TTTfs	p.F429fs	BFAR_uc002dcp.2_Frame_Shift_Del_p.F304fs|BFAR_uc010uzh.1_Frame_Shift_Del_p.F301fs	NM_016561	NP_057645	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	429	Cytoplasmic (Potential).				anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			ovary(1)|skin(1)	2						GGCCCTGTACTTTAACCCAATT	0.495													9	247	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	13023052	13023055	+	IGR	DEL	CCTT	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr17:13023052_13023055delCCTT								ELAC2 (101693 upstream) : HS3ST3A1 (375951 downstream)																							cctctttTTCccttccttccttcc	0.034													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	20648273	20648273	+	IGR	DEL	T	-	-	rs36007188		TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr17:20648273delT								LGALS9B (277425 upstream) : CCDC144NL (118437 downstream)																							AACACTAGACTTTTTTTTTTT	0.313													5	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	15038962	15038962	+	IGR	DEL	C	-	-	rs3044713		TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr19:15038962delC								OR7A17 (46795 upstream) : OR7C2 (13339 downstream)																							GGAAACTGCTCtttttttttt	0.224													2	4	---	---	---	---					
MIR1285-2	100302268	broad.mit.edu	37	2	70480799	70480799	+	5'Flank	DEL	T	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr2:70480799delT	hsa-mir-1285-2|MI0006347	-																							0						GAAATGAGACTTTTTTTTTTT	0.343													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	101318024	101318024	+	IGR	DEL	T	-	-	rs148687228	by1000genomes	TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr3:101318024delT								PCNP (4745 upstream) : ZBTB11 (50261 downstream)																							TTTTTTGTTGTTTTTTTTTTT	0.184													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	18147044	18147044	+	IGR	DEL	C	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr4:18147044delC								LCORL (123659 upstream) : None (None downstream)																							ttccttccttccttccttcct	0.124													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	7045029	7045029	+	IGR	DEL	T	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr5:7045029delT								PAPD7 (287868 upstream) : ADCY2 (351314 downstream)																							tctttctttcttttttttttt	0.114													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	173747919	173747948	+	IGR	DEL	CCTTCCTTCCTCCCCCCTTCCTTCTTCCTC	-	-	rs62394091		TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr5:173747919_173747948delCCTTCCTTCCTCCCCCCTTCCTTCTTCCTC								HMP19 (211738 upstream) : MSX2 (403627 downstream)																							ttccttgcttccttccttcctccccccttccttcttcctccctccctccc	0.057													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	138016448	138016451	+	IGR	DEL	AAGA	-	-			TCGA-DJ-A13T-01A-11D-A10S-08	TCGA-DJ-A13T-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8acbdbd-68b9-4fb3-97c8-90b290a1f098	8f7b0d92-d0ba-4881-a695-6fb6fed6d455	g.chr9:138016448_138016451delAAGA								OLFM1 (3417 upstream) : KIAA0649 (355197 downstream)																							ggaaggaaggaagaaagaaagaaa	0.000													4	6	---	---	---	---					
