Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ADSS	159	broad.mit.edu	37	1	244582071	244582071	+	Silent	SNP	C	T	T			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr1:244582071C>T	uc001iaj.2	-	9	1230	c.936G>A	c.(934-936)GAG>GAA	p.E312E		NM_001126	NP_001117	P30520	PURA2_HUMAN	adenylosuccinate synthase	312					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol|plasma membrane	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(2)|kidney(1)	3	all_cancers(71;2.17e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)	all_cancers(173;0.0896)|all_epithelial(177;0.172)	all cancers(7;9.71e-08)|GBM - Glioblastoma multiforme(7;1.28e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.0014)		L-Aspartic Acid(DB00128)	CATTGTCTTGCTCTGTAGGAA	0.338													4	67	---	---	---	---	0	0	0.009096	0	0
ADRB1	153	broad.mit.edu	37	10	115804259	115804259	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr10:115804259G>A	uc001lba.2	+	1	454	c.368G>A	c.(367-369)CGC>CAC	p.R123H		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	123	Extracellular (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	GTGTGGGGCCGCTGGGAGTAC	0.652													3	118	---	---	---	---	0	0	0.009096	0	0
CD5	921	broad.mit.edu	37	11	60886790	60886790	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr11:60886790G>A	uc009ynk.2	+	5	651	c.548G>A	c.(547-549)GGT>GAT	p.G183D		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	183	Extracellular (Potential).|SRCR 2.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		AGCCTGGGGGGTACCATCAGC	0.612													5	108	---	---	---	---	0	0	0.029380	0	0
PANX1	24145	broad.mit.edu	37	11	93912962	93912962	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr11:93912962G>A	uc001per.2	+	4	1125	c.740G>A	c.(739-741)AGC>AAC	p.S247N	PANX1_uc001peq.2_Missense_Mutation_p.S247N	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	247	Extracellular (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTTGTGTGCAGCATCAAATCA	0.493													3	118	---	---	---	---	0	0	0.004672	0	0
YLPM1	56252	broad.mit.edu	37	14	75276498	75276498	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr14:75276498G>A	uc001xqj.3	+	7	5061	c.4937G>A	c.(4936-4938)CGA>CAA	p.R1646Q	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Missense_Mutation_p.R129Q	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1451					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		GGCCATGGCCGAGGTGAGTAA	0.468													3	55	---	---	---	---	0	0	0.004672	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904194	21904194	+	RNA	SNP	C	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr17:21904194C>A	uc002gza.2	+	1		c.133C>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						agcctcaggcctgccaggacg	0													6	79	---	---	---	---	5.68852e-11	5.99601e-11	0.004482	1	0
Unknown	0	broad.mit.edu	37	17	45105705	45105705	+	RNA	SNP	A	G	G	rs147936028	by1000genomes	TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr17:45105705A>G	uc010wki.1	+	5		c.1307A>G								Homo sapiens cDNA FLJ42521 fis, clone BRACE3000973.																		GCCTGGCACGAAATGCAGTTT	0.303													4	192	---	---	---	---	0	0	0.009096	0	0
MAP2K6	5608	broad.mit.edu	37	17	67515461	67515461	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr17:67515461G>C	uc002jij.2	+	5	542	c.254G>C	c.(253-255)CGA>CCA	p.R85P	MAP2K6_uc002jii.2_Missense_Mutation_p.R85P|MAP2K6_uc002jik.2_Missense_Mutation_p.R115P	NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	85	Protein kinase.				activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					CAGCGGATCCGAGCCACAGTA	0.468													31	85	---	---	---	---	0	0	0.037714	0	0
AKAP8L	26993	broad.mit.edu	37	19	15514819	15514819	+	Splice_Site	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr19:15514819G>A	uc002naw.1	-	3	220	c.121_splice	c.e3+1	p.G41_splice	AKAP8L_uc002nax.1_Splice_Site|AKAP8L_uc010xoh.1_Splice_Site_p.G41_splice|AKAP8L_uc002nay.1_Splice_Site_p.G41_splice|AKAP8L_uc002naz.2_5'Flank	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like							cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						AATGACACTTGCCTCTATTTG	0.498													4	60	---	---	---	---	0	0	0.009096	0	0
NWD1	284434	broad.mit.edu	37	19	16910932	16910932	+	Missense_Mutation	SNP	T	C	C	rs138963732		TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr19:16910932T>C	uc002neu.3	+	17	4117	c.3695T>C	c.(3694-3696)ATT>ACT	p.I1232T	NWD1_uc002net.3_Missense_Mutation_p.I1097T|NWD1_uc002nev.3_Missense_Mutation_p.I1026T			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1232	WD 10.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TTCCCCAAAATTGGGGACAAA	0.493													35	87	---	---	---	---	0	0	0.027894	0	0
FPR2	2358	broad.mit.edu	37	19	52272349	52272349	+	Silent	SNP	C	T	T			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr19:52272349C>T	uc002pxr.2	+	2	483	c.438C>T	c.(436-438)ATC>ATT	p.I146I	FPR2_uc002pxs.3_Silent_p.I146I|FPR2_uc010epf.2_Silent_p.I146I	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	146	Helical; Name=4; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						TGAAGGTGATCGTCGGACCTT	0.478													16	90	---	---	---	---	0	0	0.028581	0	0
CCDC142	84865	broad.mit.edu	37	2	74709264	74709264	+	Missense_Mutation	SNP	C	T	T	rs145805017		TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr2:74709264C>T	uc002slr.2	-	1	1094	c.701G>A	c.(700-702)CGT>CAT	p.R234H	TTC31_uc002sls.2_5'Flank|TTC31_uc010yrv.1_5'Flank|TTC31_uc002slt.2_5'Flank|TTC31_uc002slu.2_5'Flank|CCDC142_uc002slo.2_RNA|CCDC142_uc002slq.2_Missense_Mutation_p.R234H|CCDC142_uc002slp.2_Missense_Mutation_p.R234H	NM_032779	NP_116168	Q17RM4	CC142_HUMAN	coiled-coil domain containing 142	234										central_nervous_system(1)	1						GCGGAGCACACGGGACGTGGG	0.662													3	63	---	---	---	---	0	0	0.004672	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95464613	95464613	+	RNA	SNP	T	C	C			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr2:95464613T>C	uc010fhp.2	-	17		c.2777A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATTTCTTCTTTCAACATCTTT	0.303													2	26	---	---	---	---	0	0	0.004672	0	0
LRP2	4036	broad.mit.edu	37	2	170058316	170058316	+	Silent	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr2:170058316G>A	uc002ues.2	-	44	8487	c.8274C>T	c.(8272-8274)TAC>TAT	p.Y2758Y		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2758	Extracellular (Potential).|LDL-receptor class A 17.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AATCACAGCGGTAAGAGTATT	0.493													3	130	---	---	---	---	0	0	0.004672	0	0
WFDC3	140686	broad.mit.edu	37	20	44417689	44417689	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr20:44417689C>G	uc002xpf.1	-	3	176	c.92G>C	c.(91-93)GGA>GCA	p.G31A	DNTTIP1_uc002xpk.2_5'Flank|WFDC3_uc002xpj.1_RNA|WFDC3_uc002xph.1_RNA|WFDC3_uc010ghh.1_Intron	NM_080614	NP_542181	Q8IUB2	WFDC3_HUMAN	WAP four-disulfide core domain 3 precursor	31	WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				AGGGCATTCTCCCTCTTTTGC	0.517													4	205	---	---	---	---	0	0	0.004482	0	0
NPHP3	27031	broad.mit.edu	37	3	132423069	132423069	+	Silent	SNP	A	G	G			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr3:132423069A>G	uc003epe.1	-	9	1574	c.1497T>C	c.(1495-1497)AAT>AAC	p.N499N	NPHP3_uc003epf.1_Silent_p.N254N	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	499	TPR 1.				maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						CATGGGCTGAATTAGAAGCCT	0.388													3	172	---	---	---	---	0	0	0.004672	0	0
UNC5C	8633	broad.mit.edu	37	4	96140272	96140272	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr4:96140272G>A	uc003htp.1	-	9	1647	c.1493C>T	c.(1492-1494)ACG>ATG	p.T498M	UNC5C_uc010ilc.1_Missense_Mutation_p.T517M|UNC5C_uc003htq.2_Missense_Mutation_p.T517M	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	498	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		CAGCTTGGACGTAAACTCAGA	0.512													4	180	---	---	---	---	0	0	0.009096	0	0
MTTP	4547	broad.mit.edu	37	4	100532612	100532612	+	Splice_Site	SNP	T	C	C			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr4:100532612T>C	uc003hvc.3	+	15	2245	c.1989_splice	c.e15+2	p.Q663_splice	MTTP_uc011cej.1_Splice_Site_p.Q690_splice	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large						lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	GGTAGCCAGGTAACTCACTTC	0.398													4	145	---	---	---	---	0	0	0.014758	0	0
DNAH5	1767	broad.mit.edu	37	5	13737517	13737517	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr5:13737517G>A	uc003jfd.2	-	66	11341	c.11299C>T	c.(11299-11301)CGC>TGC	p.R3767C	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3767	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTGTCAGGCGGTAAAGCAAG	0.428									Kartagener_syndrome				4	116	---	---	---	---	0	0	0.009096	0	0
POU4F3	5459	broad.mit.edu	37	5	145719616	145719616	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr5:145719616G>A	uc003loa.2	+	2	715	c.626G>A	c.(625-627)GGC>GAC	p.G209D		NM_002700	NP_002691	Q15319	PO4F3_HUMAN	POU class 4 homeobox 3	209	POU-specific.				sensory perception of sound|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCGGACGTGGGCGCGGCTCTG	0.637													6	73	---	---	---	---	0	0	0.003080	0	0
TFAP2D	83741	broad.mit.edu	37	6	50683317	50683317	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr6:50683317C>A	uc003paf.2	+	2	1040	c.528C>A	c.(526-528)GAC>GAA	p.D176E	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	176							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					CGGGAGCAGACGACTTGCAGG	0.582													6	104	---	---	---	---	0.00829132	0.00850951	0.008291	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				30	84	---	---	---	---	0	0	0.013726	0	0
SGK196	84197	broad.mit.edu	37	8	42977872	42977872	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr8:42977872T>C	uc003xpw.2	+	5	1164	c.905T>C	c.(904-906)GTC>GCC	p.V302A		NM_032237	NP_115613	Q9H5K3	SG196_HUMAN	protein kinase-like protein SgK196	302	Protein kinase.					integral to membrane	ATP binding|protein kinase activity				0						AGTGATATGGTCCGATTCCAT	0.478													3	101	---	---	---	---	0	0	0.009096	0	0
TP53INP1	94241	broad.mit.edu	37	8	95952260	95952260	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr8:95952260G>A	uc003yhg.2	-	3	685	c.301C>T	c.(301-303)CCC>TCC	p.P101S	C8orf38_uc003yhe.1_Intron|C8orf38_uc003yhf.2_Intron|TP53INP1_uc003yhh.2_Missense_Mutation_p.P101S	NM_033285	NP_150601	Q96A56	T53I1_HUMAN	tumor protein p53 inducible nuclear protein 1	101					apoptosis	PML body					0	Breast(36;8.75e-07)					AAACATGGGGGTGGGGTGATA	0.463													3	78	---	---	---	---	0	0	0.004672	0	0
CLCN5	1184	broad.mit.edu	37	X	49854982	49854982	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chrX:49854982G>A	uc004dos.1	+	10	1992	c.1744G>A	c.(1744-1746)GCA>ACA	p.A582T	CLCN5_uc004dor.1_Missense_Mutation_p.A652T|CLCN5_uc004doq.1_Missense_Mutation_p.A652T|CLCN5_uc004dot.1_Missense_Mutation_p.A582T	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	582	Cytoplasmic (By similarity).				excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					TAAGACCCTGGCAATGGATGT	0.478													20	60	---	---	---	---	0	0	0.008871	0	0
ITIH5L	347365	broad.mit.edu	37	X	54783712	54783712	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chrX:54783712G>A	uc004dtj.2	-	8	2825	c.2795C>T	c.(2794-2796)ACT>ATT	p.T932I		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	932	Pro-rich.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						CAGAGTGGGAGTAAAGGGCAT	0.567													3	69	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	12	47761313	47761314	+	IGR	INS	-	T	T	rs11419253		TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr12:47761313_47761314insT								FAM113B (130872 upstream) : RPAP3 (294402 downstream)																							ttcgctctctattttttttttt	0.000													8	3	---	---	---	---					
HOXC12	3228	broad.mit.edu	37	12	54348571	54348572	+	5'Flank	INS	-	A	A	rs55739629		TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr12:54348571_54348572insA	uc010soq.1	+							NM_173860	NP_776272	P31275	HXC12_HUMAN	homeobox C12						multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						GGATGGTGGGGGGGGGGGATCG	0.594													3	3	---	---	---	---					
IL25	64806	broad.mit.edu	37	14	23845057	23845058	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr14:23845057_23845058delTG	uc001wjr.2	+	2	812_813	c.502_503delTG	c.(502-504)TGTfs	p.C168fs	IL25_uc001wjq.2_Frame_Shift_Del_p.C152fs|CMTM5_uc001wjs.2_5'Flank|CMTM5_uc001wjt.2_5'Flank|CMTM5_uc010akm.2_5'Flank|CMTM5_uc010akn.2_5'Flank|CMTM5_uc001wju.2_5'Flank|CMTM5_uc010ako.2_5'Flank	NM_022789	NP_073626	Q9H293	IL25_HUMAN	interleukin 25 isoform 1 precursor	168					inflammatory response	extracellular space|membrane	cytokine activity|interleukin-17E receptor binding			ovary(1)	1	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.00665)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0396)		TTCCTTAGCTTGTGTGTGTGTG	0.604													7	227	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22566962	22566963	+	IGR	DEL	GA	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr15:22566962_22566963delGA								MIR1268 (53682 upstream) : GOLGA8DP (135322 downstream)																							gactgggactgagagagagaga	0.307													7	290	---	---	---	---					
STX10	8677	broad.mit.edu	37	19	13261013	13261014	+	5'Flank	INS	-	C	C			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr19:13261013_13261014insC	uc010xnb.1	-						STX10_uc002mwn.2_5'Flank|STX10_uc002mwo.2_5'Flank|STX10_uc010xna.1_5'Flank|STX10_uc010xnc.1_5'Flank|IER2_uc002mwr.2_5'Flank	NM_003765	NP_003756	O60499	STX10_HUMAN	syntaxin 10						Golgi vesicle transport|intracellular protein transport|retrograde transport, endosome to Golgi	Golgi membrane|integral to membrane	SNAP receptor activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.41e-21)			CCCAGGCCGAACCCCCCTCCCG	0.688											OREG0025290	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	9	---	---	---	---					
LYPD3	27076	broad.mit.edu	37	19	43969653	43969655	+	In_Frame_Del	DEL	AGC	-	-	rs141441894	byFrequency	TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr19:43969653_43969655delAGC	uc002owl.1	-	1	177_179	c.69_71delGCT	c.(67-72)CTGCTT>CTT	p.23_24LL>L	LYPD3_uc002owm.2_In_Frame_Del_p.23_24LL>L	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	23_24						anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				ACCTCCGCGAAGCAGCAGCAGCA	0.675													7	267	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	26372632	26372632	+	IGR	DEL	C	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr2:26372632delC								RAB10 (12310 upstream) : HADHA (40873 downstream)																							Cttttcatttctttttttttt	0.229													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	91801285	91801285	+	IGR	DEL	T	-	-	rs56833157		TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr2:91801285delT								None (None upstream) : LOC654342 (3907 downstream)																							cctctccccctagtagtccct	0.000													6	9	---	---	---	---					
TMEM90B	79953	broad.mit.edu	37	20	24524183	24524185	+	In_Frame_Del	DEL	GGA	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr20:24524183_24524185delGGA	uc002wtw.1	+	2	1083_1085	c.450_452delGGA	c.(448-453)GTGGAG>GTG	p.E155del		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	155	Poly-Glu.|Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCTACGATGTGGAGGAGGAGGAG	0.547													7	345	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	61857900	61857923	+	IGR	DEL	TCCCTCCCACCCCTTTCCTCCTCC	-	-	rs28671604	by1000genomes	TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr20:61857900_61857923delTCCCTCCCACCCCTTTCCTCCTCC								YTHDF1 (10362 upstream) : BIRC7 (9353 downstream)																							ttcctcctcttccctcccacccctttcctcctcctccctcccac	0.317													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	158195269	158195270	+	IGR	INS	-	G	G	rs150472202	by1000genomes	TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr6:158195269_158195270insG								ZDHHC14 (100293 upstream) : SNX9 (49024 downstream)																							gaggtggaggagtggaggaggt	0.322													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	170402946	170402946	+	IGR	DEL	G	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr6:170402946delG								C6orf208 (199977 upstream) : LOC154449 (160476 downstream)																							agcgtggtgtgggggggaccc	0.075													3	4	---	---	---	---					
MKRN1	23608	broad.mit.edu	37	7	140179061	140179061	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chr7:140179061delG	uc003vvt.2	-	1	309	c.84delC	c.(82-84)CCCfs	p.P28fs	MKRN1_uc011krd.1_5'UTR|MKRN1_uc003vvv.3_Frame_Shift_Del_p.P28fs|MKRN1_uc003vvu.3_5'UTR	NM_013446	NP_038474	Q9UHC7	MKRN1_HUMAN	makorin ring finger protein 1 isoform 1	28							ligase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.00956)					GGATCGGGGTGGGGGAGgctg	0.259													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	13062	13062	+	RNA	DEL	A	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chrM:13062delA	uc004cox.3	+	1		c.726delA			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		GGCCCCACCCCAGTCTCAGCC	0.542													29	13	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	844350	844351	+	IGR	DEL	GA	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chrX:844350_844351delGA								SHOX (224205 upstream) : CRLF2 (470536 downstream)																							gagagagagggagagagagaga	0.069													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	113625166	113625166	+	IGR	DEL	A	-	-			TCGA-DJ-A3UQ-01A-11D-A22D-08	TCGA-DJ-A3UQ-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73fc8e6f-827f-417a-a19d-3d473a02c8d5	0c50a2f6-1a1e-4ebb-ada3-b63c5b751cf3	g.chrX:113625166delA								None (None upstream) : HTR2C (193385 downstream)																							GGTGTGCTGGAATAACCAGAA	0.527													2	4	---	---	---	---					
