Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ESPNP	284729	broad.mit.edu	37	1	17034573	17034573	+	Silent	SNP	C	T	T			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr1:17034573C>T	uc001azn.1	-	2	195	c.81G>A	c.(79-81)GAG>GAA	p.E27E	ESPNP_uc010ocj.1_5'UTR	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CATTCACTCCCCTGCGGAGAC	0.701000													3	7	---	---	---	---	0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181706742	181706742	+	Silent	SNP	C	T	T			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr1:181706742C>T	uc001gow.2	+	23	3669	c.3504C>T	c.(3502-3504)ATC>ATT	p.I1168I	CACNA1E_uc009wxs.2_Silent_p.I1056I|CACNA1E_uc001gox.1_Silent_p.I394I|CACNA1E_uc009wxt.2_Silent_p.I394I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1168	Extracellular (Potential).|III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCAGCAGCATCGCCCTGGCGG	0.627000													5	93	---	---	---	---	0	0	1	0	0
SLC25A45	283130	broad.mit.edu	37	11	65144052	65144052	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr11:65144052C>T	uc001odp.1	-	6	1115	c.693G>A	c.(691-693)ATG>ATA	p.M231I	SLC25A45_uc009yqi.1_Missense_Mutation_p.M169I|SLC25A45_uc001odq.1_Missense_Mutation_p.M207I|SLC25A45_uc001odr.1_Missense_Mutation_p.M231I|SLC25A45_uc001ods.1_Missense_Mutation_p.M189I|SLC25A45_uc001odt.1_Missense_Mutation_p.M189I	NM_001077241	NP_001070709	Q8N413	S2545_HUMAN	solute carrier family 25, member 45 isoform b	231	Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						TCAGTCCATCCATCTGCATCC	0.617000													17	54	---	---	---	---	0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78440483	78440483	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr11:78440483T>C	uc001ozl.3	-	22	3807	c.3344A>G	c.(3343-3345)TAT>TGT	p.Y1115C		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1115	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CCAAATGAAATAATAGGACAG	0.542000													2	5	---	---	---	---	0	0	1	0	0
HERC2P2	400322	broad.mit.edu	37	15	23299984	23299984	+	RNA	SNP	G	A	A	rs429570		TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr15:23299984G>A	uc001yvq.2	-	4		c.1521C>T			HERC2P2_uc001yvo.3_RNA|HERC2P2_uc001yvp.3_RNA					Homo sapiens mRNA for KIAA0393 protein, partial cds.												0						TTCCTTCTGGGAAATCCCATC	0.582000													4	22	---	---	---	---	0	0	1	0	0
C15orf54	400360	broad.mit.edu	37	15	39544171	39544171	+	Translation_Start_Site	SNP	C	G	G			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr15:39544171C>G	uc001zkg.2	+	2	203	c.-165C>G	c.(-167--163)ATCCA>ATGCA			NM_207445	NP_997328	Q8N8G6	CO054_HUMAN	hypothetical protein LOC400360												0		all_cancers(109;5.39e-14)|all_epithelial(112;3.14e-12)|Lung NSC(122;9.74e-10)|all_lung(180;2.23e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;1.19e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0706)		AGTCAACTATCCAGAATCATA	0.363000													2	5	---	---	---	---	0	0	1	0	0
MPDU1	9526	broad.mit.edu	37	17	7495766	7495766	+	Silent	SNP	G	A	A			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr17:7495766G>A	uc010vuc.1	+	6	753	c.537G>A	c.(535-537)GTG>GTA	p.V179V	SOX15_uc002ghy.1_5'Flank|SOX15_uc002ghz.1_5'Flank|FXR2_uc002gia.1_Intron			O75352	MPU1_HUMAN	SubName: Full=cDNA FLJ57793, moderately similar to Mannose-P-dolichol utilization defect 1 protein;	Error:Variant_position_missing_in_O75352_after_alignment					dolichol-linked oligosaccharide biosynthetic process|protein folding	endoplasmic reticulum membrane|integral to membrane|mitochondrion	protein binding			central_nervous_system(1)	1						TCACAGGGGTGAGCATCCCAT	0.532000													8	81	---	---	---	---	0	0	1	0	0
CCDC144B	284047	broad.mit.edu	37	17	18483593	18483593	+	RNA	SNP	C	T	T			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr17:18483593C>T	uc002gua.3	-	12		c.2833G>A								Homo sapiens cDNA FLJ36492 fis, clone THYMU2018455.											ovary(1)|skin(1)	2						CAGTCTACAACGGTATGATTC	0.413000													3	30	---	---	---	---	0	0	1	0	0
ERMP1	79956	broad.mit.edu	37	9	5812998	5812998	+	Silent	SNP	T	C	C			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr9:5812998T>C	uc003zjm.1	-	5	966	c.912A>G	c.(910-912)TCA>TCG	p.S304S	ERMP1_uc011lme.1_RNA|ERMP1_uc010mhs.1_5'UTR|ERMP1_uc003zjn.1_Silent_p.S304S	NM_024896	NP_079172	Q7Z2K6	ERMP1_HUMAN	aminopeptidase Fxna	304	Extracellular (Potential).				proteolysis	endoplasmic reticulum membrane|integral to membrane	metal ion binding|metallopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00115)|Lung(218;0.111)		GTTTAGCTGCTGAAACATAAG	0.388000													15	79	---	---	---	---	0	0	1	0	0
LOC442421	442421	broad.mit.edu	37	9	66500841	66500841	+	RNA	SNP	C	T	T			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr9:66500841C>T	uc004aed.1	+	3		c.934C>T								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						CCACCTGGTGCCCAGGGCTCC	0.632000													4	31	---	---	---	---	0	0	1	0	0
OR1N1	138883	broad.mit.edu	37	9	125288964	125288964	+	Silent	SNP	G	A	A			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr9:125288964G>A	uc004bmn.1	-	1	609	c.609C>T	c.(607-609)ACC>ACT	p.T203T		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						CGATGAGTACGGTGCCTCCCA	0.507000													6	26	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	143391935	143391936	+	IGR	INS	-	TG	TG			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr1:143391935_143391936insTG								None (None upstream) : LOC100286793 (255703 downstream)																							ATATATATATATAAAGAGATTG	0.252													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	170338788	170338788	+	IGR	DEL	T	-	-			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr1:170338788delT								LOC284688 (85439 upstream) : GORAB (162475 downstream)																							CATCTGCTCCTTTTGCTGGCT	0.532													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	27620447	27620448	+	IGR	INS	-	TT	TT	rs142562667	by1000genomes	TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr10:27620447_27620448insTT								LOC387646 (79212 upstream) : PTCHD3 (66669 downstream)																							ACTCAGGCTTCTTTCCGCCAAG	0.465													2	4	---	---	---	---					
SYCE1	93426	broad.mit.edu	37	10	135373607	135373615	+	In_Frame_Del	DEL	TTTGCACCA	-	-			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr10:135373607_135373615delTTTGCACCA	uc001lno.2	-	2	221_229	c.116_124delTGGTGCAAA	c.(115-126)ATGGTGCAAAAG>AAG	p.MVQ39del	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_5'Flank|SYCE1_uc009ybn.2_In_Frame_Del_p.MVQ39del|SYCE1_uc001lnn.2_In_Frame_Del_p.MVQ3del	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	39_41					cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TTCTGCAGCTTTTGCACCATTTCCATCAA	0.364													14	83	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	124109553	124109553	+	IGR	DEL	T	-	-			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr11:124109553delT								OR8G2 (13243 upstream) : OR8D1 (70184 downstream)																							TTTTCCCCCCTGATTTTGGGT	0.313													8	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	20086382	20086383	+	IGR	INS	-	AAAA	AAAA			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr14:20086382_20086383insAAAA								P704P (66110 upstream) : OR4Q3 (129204 downstream)																							TCTTACAAGGTAAAAAAAATGA	0.312													10	12	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	84790135	84790136	+	IGR	INS	-	T	T			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr15:84790135_84790136insT								ADAMTSL3 (81544 upstream) : LOC388152 (77464 downstream)																							ATTTTGTTTTCTTTTTTTTTTT	0.302													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133018715	133018715	+	IGR	DEL	T	-	-	rs66735050		TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr2:133018715delT								NCRNA00164 (3173 upstream) : GPR39 (155432 downstream)																							GGCGGGGTGGTGGGGGGTGCC	0.532													2	4	---	---	---	---					
FAM160B2	64760	broad.mit.edu	37	8	21953857	21953857	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3D4-01A-11D-A19J-08	TCGA-EL-A3D4-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	7162382d-c791-45d4-9679-95ec9989906f	02eb2729-233e-41ad-a43b-274267b89d3e	g.chr8:21953857delC	uc011kyx.1	+	3	185	c.134delC	c.(133-135)ACCfs	p.T45fs	FAM160B2_uc011kyw.1_3'UTR|FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	45											0						GATGAAAGCACCCCCGCCAAG	0.577													2	4	---	---	---	---					
