Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16890648	16890648	+	Silent	SNP	A	C	C			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr1:16890648A>C	uc009vos.1	-	31	4323	c.3435T>G	c.(3433-3435)CCT>CCG	p.P1145P	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1145	NBPF 8.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GCAAGACTTCAGGCTCTTCCA	0.463000													8	579	---	---	---	---	0	0	0.001368	0	0
OR2T27	403239	broad.mit.edu	37	1	248813367	248813367	+	Silent	SNP	A	T	T			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr1:248813367A>T	uc010pzo.1	-	1	819	c.819T>A	c.(817-819)GCT>GCA	p.A273A		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGGCAGATACAGCTTTGTCCT	0.522000													38	33	---	---	---	---	0	0	0.005524	0	0
PCDH15	65217	broad.mit.edu	37	10	55782771	55782771	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr10:55782771G>C	uc001jju.1	-	19	2802	c.2407C>G	c.(2407-2409)CTA>GTA	p.L803V	PCDH15_uc010qhq.1_Missense_Mutation_p.L808V|PCDH15_uc010qhr.1_Missense_Mutation_p.L803V|PCDH15_uc010qhs.1_Missense_Mutation_p.L815V|PCDH15_uc010qht.1_Missense_Mutation_p.L810V|PCDH15_uc010qhu.1_Missense_Mutation_p.L803V|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.L803V|PCDH15_uc010qhw.1_Missense_Mutation_p.L766V|PCDH15_uc010qhx.1_Missense_Mutation_p.L732V|PCDH15_uc010qhy.1_Missense_Mutation_p.L808V|PCDH15_uc010qhz.1_Missense_Mutation_p.L803V|PCDH15_uc010qia.1_Missense_Mutation_p.L781V|PCDH15_uc010qib.1_Missense_Mutation_p.L781V|PCDH15_uc001jjw.2_Missense_Mutation_p.L803V	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	803	Extracellular (Potential).|Cadherin 7.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCCAAGGTTAGAGTTGAATGA	0.443000										HNSCC(58;0.16)			28	88	---	---	---	---	0	0	0.005443	0	0
ACACB	32	broad.mit.edu	37	12	109650693	109650693	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr12:109650693G>A	uc001tob.2	+	22	3421	c.3302G>A	c.(3301-3303)CGA>CAA	p.R1101Q	ACACB_uc001toc.2_Missense_Mutation_p.R1101Q	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1101					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	AAGGCTGATCGAGAGGTCTTC	0.542000													50	121	---	---	---	---	0	0	0.003610	0	0
NOS1	4842	broad.mit.edu	37	12	117725989	117725989	+	Silent	SNP	G	T	T			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr12:117725989G>T	uc001twm.1	-	5	1703	c.1017C>A	c.(1015-1017)TCC>TCA	p.S339S		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	339					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GATGCATGATGGAGCCCATGC	0.483000													25	50	---	---	---	---	0.000184323	0.000287328	0.007291	1	0
FAM48A	55578	broad.mit.edu	37	13	37583813	37583813	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr13:37583813A>C	uc001uwg.2	-	26	2584	c.2336T>G	c.(2335-2337)TTT>TGT	p.F779C	FAM48A_uc010abt.2_3'UTR|FAM48A_uc001uwh.2_3'UTR|FAM48A_uc001uwi.2_3'UTR|FAM48A_uc001uwj.2_3'UTR|FAM48A_uc001uwk.2_3'UTR|FAM48A_uc001uwd.2_3'UTR|FAM48A_uc001uwe.2_Missense_Mutation_p.F263C|FAM48A_uc001uwf.2_Missense_Mutation_p.F345C	NM_001014286	NP_001014308	Q8NEM7	FA48A_HUMAN	family with sequence similarity 48, member A	779					autophagy|gastrulation	SAGA-type complex	protein binding				0		Lung NSC(96;2.09e-06)|Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.0959)		all cancers(112;6.06e-07)|Epithelial(112;1.87e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00794)|BRCA - Breast invasive adenocarcinoma(63;0.0128)|GBM - Glioblastoma multiforme(144;0.0477)		CAAGACTCAAAATTTTGGAGT	0.378000													58	111	---	---	---	---	0	0	0.003610	0	0
LOC220429	220429	broad.mit.edu	37	13	50466990	50466990	+	Missense_Mutation	SNP	T	C	C	rs144184696	by1000genomes	TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr13:50466990T>C	uc001vdk.2	+	1	2446	c.2264T>C	c.(2263-2265)CTG>CCG	p.L755P		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						GTCTGTCCACTGAGGGGTTTT	0.517000													5	124	---	---	---	---	0	0	0.004482	0	0
USP6	9098	broad.mit.edu	37	17	5076150	5076150	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr17:5076150T>A	uc002gau.1	+	38	6328	c.4098T>A	c.(4096-4098)TAT>TAA	p.Y1366*	USP6_uc002gav.1_Nonsense_Mutation_p.Y1366*|USP6_uc010ckz.1_Nonsense_Mutation_p.Y1049*	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	1366					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						TTCTTTTCTATGAGCAGCAGG	0.428000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								44	115	---	---	---	---	0	0	0.003610	0	0
WSCD1	23302	broad.mit.edu	37	17	6014123	6014123	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr17:6014123A>C	uc010cli.2	+	7	1421	c.1042A>C	c.(1042-1044)AAC>CAC	p.N348H	WSCD1_uc002gcn.2_Missense_Mutation_p.N348H|WSCD1_uc002gco.2_Missense_Mutation_p.N348H|WSCD1_uc010clj.2_Missense_Mutation_p.N39H	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	348						integral to membrane	sulfotransferase activity				0						GTTCCTGCCTAACAAATCCAA	0.493000													7	327	---	---	---	---	0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	17	20407426	20407426	+	RNA	SNP	A	C	C			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr17:20407426A>C	uc002gxb.2	-	1		c.369T>G								Homo sapiens similar to Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16), mRNA (cDNA clone IMAGE:4752428).																		caaagccaccacccaagccag	0.348000													8	20	---	---	---	---	0	0	0.002299	0	0
FLJ40504	284085	broad.mit.edu	37	17	26603792	26603792	+	Missense_Mutation	SNP	T	C	C	rs138730739	by1000genomes	TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr17:26603792T>C	uc002has.3	-	3	779	c.683A>G	c.(682-684)AAT>AGT	p.N228S		NM_173624	NP_775895			SubName: Full=Putative uncharacterized protein FLJ40504; SubName: Full=cDNA FLJ40504 fis, clone TESTI2045509, highly similar to KERATIN, TYPE I CYTOSKELETAL 18;												0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		CCAAGTGACATTGGTGTCATC	0.502000													23	45	---	---	---	---	0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	19	23405748	23405748	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr19:23405748C>G	uc010xri.1	-	4	1417	c.1299G>C	c.(1297-1299)CAG>CAC	p.Q433H						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		GTTGTGAGAACTGGTTAAAGG	0.398000													10	34	---	---	---	---	0	0	0.006214	0	0
NLRC4	58484	broad.mit.edu	37	2	32477651	32477651	+	Silent	SNP	C	G	G			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr2:32477651C>G	uc002roi.2	-	3	345	c.99G>C	c.(97-99)CTG>CTC	p.L33L	NLRC4_uc002roj.1_Silent_p.L33L|NLRC4_uc010ezt.1_Silent_p.L33L	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	33	CARD.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					CTTCGCGATTCAGAACATTCC	0.403000													3	166	---	---	---	---	0	0	0.000248	0	0
STAT1	6772	broad.mit.edu	37	2	191862642	191862642	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr2:191862642C>G	uc002usj.2	-	9	1113	c.725G>C	c.(724-726)AGA>ACA	p.R242T	STAT1_uc010fse.1_Missense_Mutation_p.R242T|STAT1_uc002usk.2_Missense_Mutation_p.R242T|STAT1_uc002usl.2_Missense_Mutation_p.R244T|STAT1_uc010fsf.1_Missense_Mutation_p.R54T	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	242					activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	GCTCTGCTGTCTCCGCTTCCA	0.483000													3	64	---	---	---	---	0	0	0.004672	0	0
ASXL1	171023	broad.mit.edu	37	20	31022741	31022741	+	Silent	SNP	G	C	C			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr20:31022741G>C	uc002wxs.2	+	12	2652	c.2226G>C	c.(2224-2226)GGG>GGC	p.G742G	ASXL1_uc010geb.2_Silent_p.G633G	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	742					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						TCACAGATGGGCTAGGAGATG	0.577000			F|N|Mis		MDS|CMML								16	25	---	---	---	---	0	0	0.004007	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869357	36869357	+	Silent	SNP	T	C	C			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr20:36869357T>C	uc002xhy.1	-	3	1448	c.1176A>G	c.(1174-1176)TCA>TCG	p.S392S	KIAA1755_uc002xhz.1_Silent_p.S392S	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	392										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				CTGGCTCTTGTGAGACACCTG	0.587000													71	158	---	---	---	---	0	0	0.003610	0	0
CYTH4	27128	broad.mit.edu	37	22	37688673	37688673	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr22:37688673C>A	uc003arf.2	+	2	147	c.31C>A	c.(31-33)CTG>ATG	p.L11M	CYTH4_uc003ard.3_Missense_Mutation_p.L11M|CYTH4_uc003are.2_Missense_Mutation_p.L11M|CYTH4_uc011amw.1_Translation_Start_Site|CYTH4_uc010gxe.2_RNA	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	11					regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCCCGCGGAGCTGAGCAGCGG	0.483000													36	46	---	---	---	---	9.62906e-15	1.54649e-14	0.006230	1	0
UBP1	7342	broad.mit.edu	37	3	33451063	33451063	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr3:33451063G>A	uc003cfq.3	-	6	1116	c.586C>T	c.(586-588)CGG>TGG	p.R196W	UBP1_uc003cfr.3_Missense_Mutation_p.R196W|UBP1_uc010hga.2_Missense_Mutation_p.R196W	NM_014517	NP_055332	Q9NZI7	UBIP1_HUMAN	upstream binding protein 1 (LBP-1a) isoform a	196					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			kidney(2)	2						CCGTGCTTCCGTGGAGTAAAT	0.418000													22	86	---	---	---	---	0	0	0.002780	0	0
DOCK3	1795	broad.mit.edu	37	3	51399384	51399384	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr3:51399384G>A	uc011bds.1	+	48	5124	c.5101G>A	c.(5101-5103)GGC>AGC	p.G1701S		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1701						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCTGGGTGACGGCTCCATGGG	0.567000													6	13	---	---	---	---	0	0	0.001168	0	0
CCDC54	84692	broad.mit.edu	37	3	107097052	107097052	+	Silent	SNP	C	T	T			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr3:107097052C>T	uc003dwi.1	+	1	865	c.618C>T	c.(616-618)GAC>GAT	p.D206D		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	206											0						AGTCCACTGACCATCTTGAGA	0.393000													34	81	---	---	---	---	0	0	0.003271	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125850235	125850235	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr3:125850235T>C	uc003eim.1	-	13	1805	c.1615A>G	c.(1615-1617)AAG>GAG	p.K539E	ALDH1L1_uc010hse.1_Intron|ALDH1L1_uc011bki.1_Missense_Mutation_p.K438E|ALDH1L1_uc003eio.2_Missense_Mutation_p.K241E	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	539	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	ACCTGGATCTTGTCACACCAG	0.592000													86	224	---	---	---	---	0	0	0.003610	0	0
AGGF1	55109	broad.mit.edu	37	5	76331518	76331518	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr5:76331518A>G	uc003ket.2	+	3	826	c.466A>G	c.(466-468)ACA>GCA	p.T156A	AGGF1_uc003kes.2_Missense_Mutation_p.T156A|AGGF1_uc003keu.1_RNA	NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	156					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		TACCGATAGAACAGAAAATGT	0.353000													18	70	---	---	---	---	0	0	0.006122	0	0
MSH3	4437	broad.mit.edu	37	5	79950762	79950762	+	Silent	SNP	G	A	A			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr5:79950762G>A	uc003kgz.2	+	1	469	c.216G>A	c.(214-216)CCG>CCA	p.P72P	DHFR_uc011ctl.1_5'Flank|DHFR_uc011ctm.1_5'Flank|DHFR_uc010jap.1_5'Flank|DHFR_uc003kgx.1_Silent_p.G7G|DHFR_uc003kgy.1_5'UTR	NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	72					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		CCGCCTTCCCGCCCCAGCTGC	0.622000								MMR					4	9	---	---	---	---	0	0	0.000248	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181378	140181378	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr5:140181378A>G	uc003lhf.2	+	1	596	c.596A>G	c.(595-597)AAT>AGT	p.N199S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.N199S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	199	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGAAAAAAAATTTAAATCGA	0.368000													3	107	---	---	---	---	0	0	0.004672	0	0
SYNE1	23345	broad.mit.edu	37	6	152765610	152765611	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr6:152765610_152765611TG>CT	uc010kiw.2	-	30	4374_4375	c.3772_3773CA>AG	c.(3772-3774)CAA>AGA	p.Q1258R	SYNE1_uc003qot.3_Missense_Mutation_p.Q1265R|SYNE1_uc003qou.3_Missense_Mutation_p.Q1258R|SYNE1_uc010kjb.1_Missense_Mutation_p.Q1241R|SYNE1_uc003qow.2_Missense_Mutation_p.Q553R|SYNE1_uc003qox.1_Missense_Mutation_p.Q774R	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1258	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTTCTCAGCTTGTTCCTGGACT	0.366000										HNSCC(10;0.0054)			29	86	---	---	---	---	0	0	0.004672	0	0
SPDYE5	442590	broad.mit.edu	37	7	75124522	75124522	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr7:75124522A>G	uc011kfy.1	+	1	224	c.88A>G	c.(88-90)AGG>GGG	p.R30G		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	30											0						TGGCTGGAAAAGGAAGAGGGA	0.577000													3	57	---	---	---	---	0	0	0.000248	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				24	74	---	---	---	---	0	0	0.006320	0	0
ZNF746	155061	broad.mit.edu	37	7	149171562	149171562	+	Silent	SNP	G	A	A			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr7:149171562G>A	uc003wfw.2	-	7	2119	c.1848C>T	c.(1846-1848)TCC>TCT	p.S616S	ZNF746_uc010lpi.2_Silent_p.S617S	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	616					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			AAGGTCCTTTGGAGGCGGGGC	0.687000													13	15	---	---	---	---	0	0	0.004007	0	0
FAAH	2166	broad.mit.edu	37	1	46877297	46877298	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr1:46877297_46877298delCT	uc001cpu.2	+	12	1412_1413	c.1330_1331delCT	c.(1330-1332)CTCfs	p.L444fs	FAAH_uc001cpv.2_Intron	NM_001441	NP_001432	O00519	FAAH1_HUMAN	fatty acid amide hydrolase	444	Cytoplasmic (By similarity).				fatty acid catabolic process	cytoplasm|cytoskeleton|endomembrane system|integral to membrane|organelle membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|fatty acid amide hydrolase activity			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)				Propofol(DB00818)|Thiopental(DB00599)	GGCTGGAAAACTCTGGGAACTG	0.594													16	33	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	10660065	10660065	+	IGR	DEL	T	-	-			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr12:10660065delT								KLRC1 (53081 upstream) : KLRA1 (81013 downstream)																							TTATTCTCTCTTTTTTTTTTT	0.323													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	74865395	74865396	+	IGR	DEL	CA	-	-			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr14:74865395_74865396delCA								C14orf115 (38685 upstream) : TMEM90A (7200 downstream)																							cacgtgcgtgcacacacacaca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	29083972	29083973	+	RNA	INS	-	TCT	TCT			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr15:29083972_29083973insTCT	uc001zcj.2	+	3		c.323_324insTCT								Homo sapiens, Similar to hect domain and RLD 2, clone IMAGE:4581928, mRNA.																		CAACCAGGTAATCTGAGTTTTG	0.371													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	16748911	16748913	+	IGR	DEL	GCT	-	-			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr17:16748911_16748913delGCT								LOC162632 (41092 upstream) : TNFRSF13B (83936 downstream)																							CGCCCTCAAAGCTGCTGCTGCCA	0.650													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	46484229	46484229	+	IGR	DEL	T	-	-			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr2:46484229delT								PRKCE (69101 upstream) : EPAS1 (40334 downstream)																							CAGGGAATCCTTGCCCTTCTT	0.502													3	4	---	---	---	---					
RAB3GAP1	22930	broad.mit.edu	37	2	135888244	135888244	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr2:135888244delG	uc002tuj.2	+	13	1214	c.1189delG	c.(1189-1191)GTAfs	p.V397fs	RAB3GAP1_uc010fnf.2_Frame_Shift_Del_p.V397fs|RAB3GAP1_uc010fng.2_Frame_Shift_Del_p.V222fs|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	397						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		ACACAGAGGTGTAGAGGAGTC	0.328													20	57	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	32711133	32711134	+	IGR	INS	-	A	A			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr20:32711133_32711134insA								EIF2S2 (11048 upstream) : ASIP (137037 downstream)																							AATTAAGCCTGAAAAAAAAAAA	0.317													2	4	---	---	---	---					
MIR574	693159	broad.mit.edu	37	4	38869680	38869681	+	RNA	DEL	GT	-	-			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr4:38869680_38869681delGT	hsa-mir-574|MI0003581	+			c.28_29delGT			FAM114A1_uc003gtn.2_Intron|FAM114A1_uc011byh.1_Intron|FAM114A1_uc011byg.1_Intron																	0						gggcgtgtgagtgtgtgtgtgt	0.559													2	4	---	---	---	---					
TUBB4Q	56604	broad.mit.edu	37	4	190906066	190906066	+	5'Flank	DEL	G	-	-			TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr4:190906066delG	uc011clg.1	-							NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q						'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		AGCGCGAGAAGGAGGAGCAGA	0.642													3	4	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149518533	149518533	+	Frame_Shift_Del	DEL	C	-	-	rs11353848		TCGA-EL-A3GP-01A-11D-A202-08	TCGA-EL-A3GP-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0897af2-30df-472e-b4d6-343c98c51231	028e9464-4ba4-4319-888b-583c4bbed034	g.chr7:149518533delC	uc010lpk.2	+	89	12602	c.12602delC	c.(12601-12603)TCCfs	p.S4201fs	SSPO_uc010lpm.1_5'Flank|SSPO_uc003wgg.2_5'Flank|SSPO_uc003wgh.2_5'Flank|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4201	TSP type-1 19.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GAGGAGCAGTCCCAGAGCCAG	0.711													3	3	---	---	---	---					
