Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			115	173	---	---	---	---	0	0	0.014410	0	0
HIST2H3D	653604	broad.mit.edu	37	1	149785212	149785212	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr1:149785212G>A	uc010pbl.1	-	1	25	c.25C>T	c.(25-27)CGC>TGC	p.R9C	HIST2H2BF_uc010pbj.1_5'Flank|HIST2H2BF_uc010pbk.1_5'Flank|HIST2H2BF_uc001esr.2_5'Flank	NM_001123375	NP_001116847	Q71DI3	H32_HUMAN	histone cluster 2, H3d	9					blood coagulation|nucleosome assembly	nucleoplasm|nucleosome	DNA binding|protein binding				0						GTCGACTTGCGGGCAGTCTGC	0.602													37	49	---	---	---	---	0	0	0.013114	0	0
CDHR1	92211	broad.mit.edu	37	10	85972879	85972879	+	Silent	SNP	C	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr10:85972879C>T	uc001kcv.2	+	16	1815	c.1815C>T	c.(1813-1815)AAC>AAT	p.N605N	CDHR1_uc001kcw.2_Silent_p.N605N|CDHR1_uc009xst.2_Silent_p.N309N|CDHR1_uc001kcx.2_5'UTR	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	605	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						AACCCAACAACCTGGTGGACT	0.557													60	59	---	---	---	---	0	0	0.014410	0	0
KCNA4	3739	broad.mit.edu	37	11	30033056	30033056	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr11:30033056G>T	uc001msk.2	-	2	2322	c.1170C>A	c.(1168-1170)TGC>TGA	p.C390*		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	390	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GACAAGCAAAGCAGCGAACCA	0.448													47	73	---	---	---	---	1.02687e-29	7.18806e-29	0.013114	1	0
FAT3	120114	broad.mit.edu	37	11	92577600	92577600	+	Silent	SNP	C	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr11:92577600C>T	uc001pdj.3	+	18	11084	c.11067C>T	c.(11065-11067)AGC>AGT	p.S3689S	FAT3_uc001pdi.3_Silent_p.S129S	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3689	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCATCATCAGCATCCAGCCCG	0.602										TCGA Ovarian(4;0.039)			16	24	---	---	---	---	0	0	0.004007	0	0
C11orf87	399947	broad.mit.edu	37	11	109294829	109294829	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr11:109294829C>T	uc001pkn.2	+	2	844	c.470C>T	c.(469-471)CCG>CTG	p.P157L	C11orf87_uc010rwb.1_5'Flank	NM_207645	NP_997528	Q6NUJ2	CK087_HUMAN	hypothetical protein LOC399947 precursor	157	Cytoplasmic (Potential).					integral to membrane		p.P157R(1)		ovary(2)	2						CCTGGCCTCCCGTGCCAGGGT	0.672													48	55	---	---	---	---	0	0	0.013114	0	0
PSMA6	5687	broad.mit.edu	37	14	35761712	35761712	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr14:35761712C>A	uc001wtd.2	+	1	139	c.30C>A	c.(28-30)GAC>GAA	p.D10E	KIAA0391_uc001wta.2_Intron|PSMA6_uc010tpt.1_5'UTR|PSMA6_uc010tpu.1_5'UTR	NM_002791	NP_002782	P60900	PSA6_HUMAN	proteasome alpha 6 subunit	10					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nuclear matrix|polysome|proteasome core complex, alpha-subunit complex|sarcomere	NF-kappaB binding|purine ribonucleoside triphosphate binding|RNA binding|threonine-type endopeptidase activity				0	Breast(36;0.0519)|Hepatocellular(127;0.158)		Lung(238;3.81e-05)|LUAD - Lung adenocarcinoma(48;5.59e-05)|Epithelial(34;0.00342)|all cancers(34;0.00973)	GBM - Glioblastoma multiforme(112;0.0234)		CCGGTTTTGACCGCCACATTA	0.562													9	115	---	---	---	---	0.000673444	0.00394966	0.008291	1	0
ADAM6	8755	broad.mit.edu	37	14	107062402	107062402	+	RNA	SNP	G	C	C			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr14:107062402G>C	uc010tyt.1	-	131		c.6193C>G								Parts of antibodies, mostly variable regions.												0						TCCTGGGCCCGACTCCTGCAG	0.597													4	73	---	---	---	---	0	0	0.014758	0	0
GRAMD2	196996	broad.mit.edu	37	15	72457708	72457708	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr15:72457708T>G	uc002atq.2	-	8	611	c.587A>C	c.(586-588)GAA>GCA	p.E196A	GRAMD2_uc010bis.2_Missense_Mutation_p.E196A|GRAMD2_uc010ukh.1_5'Flank	NM_001012642	NP_001012660	Q8IUY3	GRAM2_HUMAN	GRAM domain containing 2	196						integral to membrane					0						AGACTCAGGTTCCCCTGAAAA	0.552													7	118	---	---	---	---	0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	15	102292797	102292797	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr15:102292797C>G	uc010usj.1	+	4	444	c.385C>G	c.(385-387)CCA>GCA	p.P129A	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		GAGCTGCTGTCCAACCTGCAC	0.597													3	35	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	15	102292839	102292839	+	Splice_Site	SNP	C	A	A	rs62026971		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr15:102292839C>A	uc010usj.1	+	4	484	c.425_splice	c.e4+2	p.R142_splice	uc002bxo.2_5'Flank|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CTCGTGGAGGCGTCGGCAGAG	0.597													5	16	---	---	---	---	2.0095e-06	1.24589e-05	0.001984	1	0
ADCY9	115	broad.mit.edu	37	16	4164144	4164144	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr16:4164144T>G	uc002cvx.2	-	2	1839	c.1300A>C	c.(1300-1302)AAG>CAG	p.K434Q		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	434	Cytoplasmic (Potential).|Guanylate cyclase 1.				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TTCTCACACTTGGTCTCCTCA	0.612													6	136	---	---	---	---	0	0	0.001168	0	0
GAS8	2622	broad.mit.edu	37	16	90103675	90103675	+	Silent	SNP	C	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr16:90103675C>T	uc002fqi.1	+	7	914	c.792C>T	c.(790-792)CAC>CAT	p.H264H	GAS8_uc010vps.1_Silent_p.H239H|GAS8_uc002fqh.2_Silent_p.H181H|GAS8_uc010vpt.1_3'UTR|GAS8_uc010vpu.1_3'UTR|GAS8_uc010vpv.1_Silent_p.H235H|GAS8_uc010cjc.1_Silent_p.H181H|GAS8_uc010vpw.1_Silent_p.H181H|GAS8_uc002fqj.1_Silent_p.H72H	NM_001481	NP_001472	O95995	GAS8_HUMAN	growth arrest-specific 8	264	Potential.				negative regulation of cell proliferation|sperm motility	cilium|Golgi apparatus|microtubule|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.029)		AGGAGGACCACCTGGAGAGGG	0.627													4	21	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	22	18845990	18845990	+	RNA	SNP	C	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr22:18845990C>T	uc002zoe.2	+	5		c.2352C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		ACCTCCATCCCGTCCTGCGCA	0.582													7	34	---	---	---	---	0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	22	18845998	18845998	+	RNA	SNP	G	A	A			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr22:18845998G>A	uc002zoe.2	+	5		c.2360G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CCCGTCCTGCGCAGGCCGACA	0.607													7	33	---	---	---	---	0	0	0.003080	0	0
ARVCF	421	broad.mit.edu	37	22	19969230	19969230	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr22:19969230G>A	uc002zqz.2	-	5	671	c.400C>T	c.(400-402)CGG>TGG	p.R134W	ARVCF_uc002zqy.2_5'Flank|ARVCF_uc002zra.2_Missense_Mutation_p.R134W	NM_001670	NP_001661	O00192	ARVC_HUMAN	armadillo repeat protein	134					cell adhesion|multicellular organismal development		protein binding			liver(1)	1	Colorectal(54;0.0993)					CGTACTGTCCGAGTGGTCACC	0.622													38	58	---	---	---	---	0	0	0.007835	0	0
SF3A1	10291	broad.mit.edu	37	22	30734812	30734812	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr22:30734812G>A	uc003ahl.2	-	11	1841	c.1709C>T	c.(1708-1710)GCT>GTT	p.A570V		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	570					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						GATGGGTGGAGCCGAGCTGGG	0.542													95	103	---	---	---	---	0	0	0.014410	0	0
KLHL24	54800	broad.mit.edu	37	3	183397022	183397022	+	Missense_Mutation	SNP	A	G	G	rs143529905		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr3:183397022A>G	uc003flv.2	+	8	2046	c.1751A>G	c.(1750-1752)TAT>TGT	p.Y584C	KLHL24_uc003flw.2_Missense_Mutation_p.Y584C	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	584	Kelch 6.					axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			CCAGTGTCCTATCATGGCTGT	0.463													33	36	---	---	---	---	0	0	0.009535	0	0
TBC1D7	51256	broad.mit.edu	37	6	13307860	13307860	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr6:13307860C>T	uc003naj.2	-	6	728	c.637G>A	c.(637-639)GGA>AGA	p.G213R	TBC1D7_uc011dis.1_Intron|TBC1D7_uc003nan.2_Missense_Mutation_p.G213R|TBC1D7_uc003nal.2_Missense_Mutation_p.G213R|TBC1D7_uc003nam.2_Missense_Mutation_p.G213R|TBC1D7_uc003nao.2_Missense_Mutation_p.G186R|TBC1D7_uc010jpd.2_Missense_Mutation_p.G167R|TBC1D7_uc003nap.2_Missense_Mutation_p.G186R	NM_016495	NP_057579	Q9P0N9	TBCD7_HUMAN	TBC1 domain family, member 7 isoform a	213	Rab-GAP TBC.				positive regulation of protein ubiquitination	cytoplasmic membrane-bounded vesicle	protein binding|Rab GTPase activator activity			ovary(1)	1	Breast(50;0.0296)|Ovarian(93;0.0339)	all_hematologic(90;0.135)	Epithelial(50;0.0784)|BRCA - Breast invasive adenocarcinoma(129;0.13)|all cancers(50;0.21)			GGCAAACATCCCGCAAAGCAC	0.483													40	56	---	---	---	---	0	0	0.006230	0	0
C6orf47	57827	broad.mit.edu	37	6	31627090	31627090	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr6:31627090C>A	uc003nvm.1	-	1	1460	c.635G>T	c.(634-636)CGT>CTT	p.R212L		NM_021184	NP_067007	O95873	CF047_HUMAN	G4 protein	212										ovary(1)	1						CAGCGGTCCACGCAGGCCCAG	0.637													45	34	---	---	---	---	1.76056e-25	1.19388e-24	0.011902	1	0
SYNCRIP	10492	broad.mit.edu	37	6	86324743	86324743	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr6:86324743C>T	uc003pla.2	-	11	2144	c.1603G>A	c.(1603-1605)GTT>ATT	p.V535I	SYNCRIP_uc003pku.2_Missense_Mutation_p.V535I|SYNCRIP_uc003pkw.2_Missense_Mutation_p.V500I|SYNCRIP_uc003pky.2_Missense_Mutation_p.V437I|SYNCRIP_uc003pkv.2_Missense_Mutation_p.V535I|SYNCRIP_uc003pkx.2_Missense_Mutation_p.V383I|SYNCRIP_uc003pkz.2_Missense_Mutation_p.V500I	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	535	Interaction with SMN.|Interaction with APOBEC1.|8 X 3 AA repeats of R-G-G.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		GCACCTCGAACGCCTCTTGCT	0.627													39	177	---	---	---	---	0	0	0.009718	0	0
MOBKL2B	79817	broad.mit.edu	37	9	27359236	27359236	+	Splice_Site	SNP	T	C	C			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr9:27359236T>C	uc003zqn.2	-	3	915	c.419_splice	c.e3-1	p.G140_splice		NM_024761	NP_079037	Q86TA1	MOL2B_HUMAN	MOB1, Mps One Binder kinase activator-like 2B								metal ion binding|protein binding			ovary(1)|pleura(1)	2		all_neural(11;9.12e-11)		Lung(218;6.54e-05)|LUSC - Lung squamous cell carcinoma(38;0.000397)		AGGGAACACCTAGAGAAGAAA	0.453													59	71	---	---	---	---	0	0	0.014410	0	0
LAMC3	10319	broad.mit.edu	37	9	133917103	133917103	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr9:133917103G>T	uc004caa.1	+	7	1461	c.1363G>T	c.(1363-1365)GAA>TAA	p.E455*		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	455	Laminin EGF-like 4.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		AGAGAATGTGGAAGGCAACCT	0.582													13	43	---	---	---	---	0.000308642	0.00186043	0.003163	1	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9160470	9160470	+	RNA	SNP	C	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chrY:9160470C>T	uc004frl.1	-	1		c.14G>A				NR_001547				Homo sapiens RBMY1A3P pseudogene, mRNA sequence.												0						GATGATCTGCCTCTACCATTG	0.333													6	101	---	---	---	---	0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	10	38939620	38939620	+	IGR	DEL	C	-	-	rs139346722		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr10:38939620delC								LOC399744 (198540 upstream) : None (None downstream)																							GTTAAAGTCTCCCTCACCttt	0.144													16	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42705742	42705743	+	IGR	INS	-	A	A	rs61853421		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr10:42705742_42705743insA								None (None upstream) : LOC441666 (121572 downstream)																							TGTGATGTGGGCAAGAGCCTGC	0.485													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262780	130262780	+	IGR	DEL	A	-	-			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr10:130262780delA								MKI67 (338312 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262814	130262814	+	IGR	DEL	A	-	-	rs142355007		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr10:130262814delA								MKI67 (338346 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.025													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	1824009	1824010	+	IGR	INS	-	A	A	rs140710701	by1000genomes	TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr11:1824009_1824010insA								CTSD (38787 upstream) : SYT8 (24699 downstream)																							CCaaaaaaaacaaaaaaatcaa	0.396													8	12	---	---	---	---					
MIR1244	100302285	broad.mit.edu	37	12	9392182	9392183	+	5'Flank	INS	-	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr12:9392182_9392183insT	hsa-mir-1244-3|MI0015975	-						uc001qvm.1_5'Flank																	0						TTTTTTACAAGTTTTTTTTTTC	0.371													7	157	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	31270080	31270081	+	In_Frame_Ins	INS	-	AAA	AAA	rs112314315		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr12:31270080_31270081insAAA	uc010sjy.1	-	28	3788_3789	c.3788_3789insTTT	c.(3787-3789)ATC>ATTTTC	p.1263_1264insF	uc001rjy.2_Intron|uc001rjz.2_Intron					RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		CGTTAAACTGGATCTCACTGGA	0.505													9	28	---	---	---	---					
PPHLN1	51535	broad.mit.edu	37	12	42717961	42717961	+	5'Flank	DEL	G	-	-	rs3747557	by1000genomes	TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr12:42717961delG	uc001rng.1	+						PPHLN1_uc001rmy.2_Intron|PPHLN1_uc001rna.2_5'Flank|PPHLN1_uc001rne.2_5'Flank|PPHLN1_uc001rnb.2_5'Flank|PPHLN1_uc001rnd.2_5'Flank|PPHLN1_uc001rnc.2_5'Flank|PPHLN1_uc001rnf.2_5'Flank|PPHLN1_uc010skq.1_5'Flank|PPHLN1_uc010skr.1_5'Flank|PPHLN1_uc010sks.1_5'Flank|PPHLN1_uc010skt.1_5'Flank|PPHLN1_uc001rni.1_5'Flank|PPHLN1_uc001rnh.1_5'Flank|PPHLN1_uc010sku.1_5'Flank|ZCRB1_uc001rmz.2_Intron	NM_016488	NP_057572	Q8NEY8	PPHLN_HUMAN	periphilin 1 isoform 1						keratinization	cytoplasm|nucleus				ovary(1)|breast(1)	2	all_cancers(12;0.00049)|Breast(8;0.165)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0875)		ttctttttttgttgtttgaga	0.174													7	53	---	---	---	---					
TSC22D1	8848	broad.mit.edu	37	13	45148706	45148708	+	In_Frame_Del	DEL	TGC	-	-	rs112613609		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr13:45148706_45148708delTGC	uc001uzn.3	-	1	1994_1996	c.1503_1505delGCA	c.(1501-1506)CAGCAA>CAA	p.501_502QQ>Q	TSC22D1_uc001uzo.1_In_Frame_Del_p.501_502QQ>Q	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	501_502	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		ttgttgttgttgctgctgctgct	0.409													10	192	---	---	---	---					
LOC647288	647288	broad.mit.edu	37	13	75814307	75814309	+	In_Frame_Del	DEL	AGG	-	-			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr13:75814307_75814309delAGG	uc010ths.1	-	1	209_211	c.168_170delCCT	c.(166-171)CTCCTT>CTT	p.56_57LL>L		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACAAAAAAAGGAGAACAACAA	0.414													7	134	---	---	---	---					
MLH3	27030	broad.mit.edu	37	14	75514603	75514604	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr14:75514603_75514604insT	uc001xrd.1	-	2	1971_1972	c.1755_1756insA	c.(1753-1758)AAAGAAfs	p.K585fs	MLH3_uc001xre.1_Frame_Shift_Ins_p.K585fs|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	585_586					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		TTGCTAGATTCTTTTTTTTTCT	0.356								MMR					7	190	---	---	---	---					
WBP1	23559	broad.mit.edu	37	2	74685770	74685770	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr2:74685770delG	uc002slj.1	+	1	194	c.41delG	c.(40-42)TGGfs	p.W14fs	WBP1_uc002slh.1_Intron|INO80B_uc002sli.1_Intron|WBP1_uc002slk.1_Frame_Shift_Del_p.W14fs|WBP1_uc002sll.1_RNA	NM_012477	NP_036609	Q96G27	WBP1_HUMAN	WW domain binding protein 1	14							WW domain binding				0						GAGGAGGCCTGGGGGGCACTT	0.632													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	92031435	92031436	+	IGR	INS	-	C	C			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr2:92031435_92031436insC								GGT8P (61282 upstream) : FKSG73 (97723 downstream)																							CCACCAGCCCTCCTGTGGTAGG	0.653													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	130948325	130948327	+	IGR	DEL	TTG	-	-	rs10175962		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr2:130948325_130948327delTTG								FAM128B (26 upstream) : TUBA3E (994 downstream)																							ttttttttttttgtttttttttt	0.409													15	23	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	22423425	22423426	+	5'Flank	INS	-	A	A			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr3:22423425_22423426insA	uc003ccf.2	+											Homo sapiens HMG1 mRNA, 3' untranslated region.																		GTCAACTTCTCAGAGTTTTCTA	0.436													8	203	---	---	---	---					
NDUFS6	4726	broad.mit.edu	37	5	1801427	1801428	+	5'Flank	INS	-	G	G	rs150444980	by1000genomes	TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr5:1801427_1801428insG	uc003jcy.2	+						MRPL36_uc003jcx.3_5'Flank	NM_004553	NP_004544	O75380	NDUS6_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 6,						mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)	1					NADH(DB00157)	GCGCTCCCCGCCCCCAGGGCGA	0.644													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68413567	68413567	+	RNA	DEL	G	-	-			TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr9:68413567delG	uc004aex.2	+	1		c.122delG								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		CTCCCCCAGTGGCGCCGGATC	0.552													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	98910246	98910246	+	IGR	DEL	A	-	-	rs139074595		TCGA-EM-A2CN-01A-11D-A19J-08	TCGA-EM-A2CN-10B-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	5c02d399-07af-4573-a568-bc1b256bc8f8	06dfc16a-ca37-46ca-8abb-20c1295e8f3a	g.chr9:98910246delA								NCRNA00092 (126209 upstream) : HSD17B3 (87343 downstream)																							CCATCTCCTGAAAAAAAAAAA	0.313													5	2	---	---	---	---					
