Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CNR2	1269	broad.mit.edu	37	1	24201958	24201958	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr1:24201958C>G	uc001bif.2	-	2	277	c.150G>C	c.(148-150)GAG>GAC	p.E50D		NM_001841	NP_001832	P34972	CNR2_HUMAN	cannabinoid receptor 2 (macrophage)	50	Helical; Name=1; (Potential).				behavior|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	dendrite|integral to plasma membrane|perikaryon	cannabinoid receptor activity			skin(2)|central_nervous_system(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.32e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;2.9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.146)	Nabilone(DB00486)	CAGCCACGTTCTCCAGGGCAC	0.557000													6	67	---	---	---	---	0	0	0.047766	0	0
JUN	3725	broad.mit.edu	37	1	59248693	59248693	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr1:59248693G>A	uc001cze.2	-	1	1093	c.50C>T	c.(49-51)TCG>TTG	p.S17L	uc001czf.2_5'Flank|uc010oop.1_5'Flank	NM_002228	NP_002219	P05412	JUN_HUMAN	jun oncogene	17					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation by host of viral transcription|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein import into nucleus|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway		R-SMAD binding|Rho GTPase activator activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription coactivator activity|transcription factor binding|transcription regulatory region DNA binding				0	all_cancers(7;8.55e-07)				Arsenic trioxide(DB01169)|Irbesartan(DB01029)|Vinblastine(DB00570)	CGGGAGGAACGAGGCGTTGAG	0.552000			A		sarcoma								15	128	---	---	---	---	0	0	0.119110	0	0
ABL2	27	broad.mit.edu	37	1	179077163	179077163	+	Nonsense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr1:179077163G>C	uc001gmj.3	-	12	3526	c.3239C>G	c.(3238-3240)TCA>TGA	p.S1080*	ABL2_uc010pnf.1_Nonsense_Mutation_p.S977*|ABL2_uc010png.1_Nonsense_Mutation_p.S956*|ABL2_uc010pnh.1_Nonsense_Mutation_p.S1059*|ABL2_uc001gmg.3_Nonsense_Mutation_p.S962*|ABL2_uc001gmi.3_Nonsense_Mutation_p.S1065*|ABL2_uc001gmh.3_Nonsense_Mutation_p.S1044*|ABL2_uc010pne.1_Nonsense_Mutation_p.S941*	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	1080	F-actin-binding (By similarity).				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TTTGTCTGCTGAGATTTTCTC	0.532000			T	ETV6	AML								8	37	---	---	---	---	0	0	0.038147	0	0
ABL2	27	broad.mit.edu	37	1	179077269	179077269	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr1:179077269G>A	uc001gmj.3	-	12	3420	c.3133C>T	c.(3133-3135)CAA>TAA	p.Q1045*	ABL2_uc010pnf.1_Nonsense_Mutation_p.Q942*|ABL2_uc010png.1_Nonsense_Mutation_p.Q921*|ABL2_uc010pnh.1_Nonsense_Mutation_p.Q1024*|ABL2_uc001gmg.3_Nonsense_Mutation_p.Q927*|ABL2_uc001gmi.3_Nonsense_Mutation_p.Q1030*|ABL2_uc001gmh.3_Nonsense_Mutation_p.Q1009*|ABL2_uc010pne.1_Nonsense_Mutation_p.Q906*	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	1045	Pro-rich.|F-actin-binding (By similarity).				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	AGAGGCACTTGAGGTGGAGGC	0.552000			T	ETV6	AML								10	91	---	---	---	---	0	0	0.058154	0	0
RNF2	6045	broad.mit.edu	37	1	185060797	185060797	+	Missense_Mutation	SNP	G	C	C	rs144442502	byFrequency	TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr1:185060797G>C	uc001grc.1	+	3	407	c.174G>C	c.(172-174)TTG>TTC	p.L58F	RNF2_uc001grd.1_Missense_Mutation_p.L58F|RNF2_uc001gre.1_5'Flank	NM_007212	NP_009143	Q99496	RING2_HUMAN	ring finger protein 2	58	Interaction with HIP2.|RING-type.				histone H2A monoubiquitination|transcription, DNA-dependent	MLL1 complex|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			breast(1)	1		Breast(1374;0.000496)		Colorectal(1306;6.9e-08)|KIRC - Kidney renal clear cell carcinoma(1967;8.12e-06)		TGGATATGTTGAAGAACACCA	0.388000													7	141	---	---	---	---	0	0	0.029380	0	0
CACNA1S	779	broad.mit.edu	37	1	201009764	201009764	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr1:201009764G>A	uc001gvv.2	-	42	5439	c.5212C>T	c.(5212-5214)CCT>TCT	p.P1738S		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1738	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CAGGGGGCAGGAGGTGCCTGG	0.607000													4	57	---	---	---	---	0	0	0.014758	0	0
ACBD5	91452	broad.mit.edu	37	10	27520723	27520723	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr10:27520723A>G	uc010qdp.1	-	4	520	c.329T>C	c.(328-330)ATG>ACG	p.M110T	ACBD5_uc010qdm.1_Missense_Mutation_p.M108T|ACBD5_uc010qdn.1_Missense_Mutation_p.M1T|ACBD5_uc010qdo.1_Missense_Mutation_p.M1T|ACBD5_uc001ito.2_Missense_Mutation_p.M75T|ACBD5_uc001itp.2_Missense_Mutation_p.M1T|ACBD5_uc001itq.2_Missense_Mutation_p.M1T|ACBD5_uc001itr.1_5'UTR	NM_145698	NP_663736	Q5T8D3	ACBD5_HUMAN	acyl-Coenzyme A binding domain containing 5	108	ACB.				transport	integral to membrane|peroxisomal membrane	fatty-acyl-CoA binding				0						CTCTTTGGTCATATCACCCAG	0.328000													5	69	---	---	---	---	0	0	0.014758	0	0
TMEM26	219623	broad.mit.edu	37	10	63188763	63188763	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr10:63188763G>C	uc001jlo.2	-	4	895	c.526C>G	c.(526-528)CAA>GAA	p.Q176E	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlq.2_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	176						integral to membrane					0	Prostate(12;0.0112)					AGAAGAAGTTGAGAGAGTTGA	0.448000													12	33	---	---	---	---	0	0	0.093190	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65349703	65349703	+	Silent	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr11:65349703G>C	uc001oeo.3	+	9	1825	c.1560G>C	c.(1558-1560)GGG>GGC	p.G520G	EHBP1L1_uc001oep.1_Intron	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	520										central_nervous_system(1)	1						GTATTGAGGGGACAGGCCTGG	0.637000													4	14	---	---	---	---	0	0	0.014758	0	0
ANO1	55107	broad.mit.edu	37	11	70007786	70007786	+	Silent	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr11:70007786G>A	uc001opj.2	+	18	2144	c.1839G>A	c.(1837-1839)CTG>CTA	p.L613L	ANO1_uc001opk.1_Silent_p.L555L|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.L322L	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	613	Helical; (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						CTTTCCTGCTGAAGTTTGTGA	0.527000													20	103	---	---	---	---	0	0	0.062417	0	0
GRIN2B	2904	broad.mit.edu	37	12	13769559	13769559	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr12:13769559C>T	uc001rbt.2	-	5	1337	c.1158G>A	c.(1156-1158)ATG>ATA	p.M386I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	386	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CATAGTACTTCATCTGCAGGG	0.502000													11	67	---	---	---	---	0	0	0.093190	0	0
FAIM2	23017	broad.mit.edu	37	12	50264321	50264321	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr12:50264321A>G	uc001rvj.1	-	12	1062	c.917T>C	c.(916-918)TTC>TCC	p.F306S	FAIM2_uc001rvi.1_Missense_Mutation_p.F260S|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	306	Helical; (Potential).				anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						CTGCAGGAAGAAGGTGAAGAT	0.552000													30	49	---	---	---	---	0	0	0.050027	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57985101	57985101	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr12:57985101C>T	uc001sou.2	+	1	160	c.29C>T	c.(28-30)ACG>ATG	p.T10M	PIP4K2C_uc001sot.2_Missense_Mutation_p.T10M|PIP4K2C_uc010srs.1_Missense_Mutation_p.T10M|PIP4K2C_uc010srt.1_Missense_Mutation_p.T10M	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	10						cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					CCACCAGCCACGGTATCGGCG	0.672000													21	67	---	---	---	---	0	0	0.069288	0	0
CAND1	55832	broad.mit.edu	37	12	67699222	67699222	+	Missense_Mutation	SNP	T	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr12:67699222T>A	uc001stn.2	+	10	2211	c.1774T>A	c.(1774-1776)TGT>AGT	p.C592S	CAND1_uc001sto.2_Intron	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	592	HEAT 13.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		GGCTATTTCCTGTATGGGACA	0.368000													7	116	---	---	---	---	0	0	0.029380	0	0
VEZT	55591	broad.mit.edu	37	12	95660246	95660246	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr12:95660246G>C	uc001tdz.2	+	5	653	c.548G>C	c.(547-549)AGA>ACA	p.R183T	VEZT_uc009zsy.1_Missense_Mutation_p.R25T|VEZT_uc001tdr.2_Missense_Mutation_p.R25T|VEZT_uc001tds.2_Missense_Mutation_p.R135T|VEZT_uc001tdt.2_Missense_Mutation_p.R135T|VEZT_uc009zsz.1_Missense_Mutation_p.R183T|VEZT_uc001tdv.2_Missense_Mutation_p.R152T|VEZT_uc001tdw.1_Missense_Mutation_p.R135T|VEZT_uc009zta.1_Missense_Mutation_p.R135T	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	183						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						CTGGTCATAAGAGCTTTGAGA	0.428000													38	224	---	---	---	---	0	0	0.069456	0	0
PSPC1	55269	broad.mit.edu	37	13	20325529	20325529	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr13:20325529A>T	uc001uml.2	-	4	1035	c.849T>A	c.(847-849)GAT>GAA	p.D283E	PSPC1_uc001umj.1_RNA|PSPC1_uc001umk.1_RNA	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	283	Sufficient for perinucleolar caps localization and interaction with NONO.|Potential.|Sufficient for paraspeckles localization.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TTTCCATTTCATCAAGAGCCT	0.423000													6	159	---	---	---	---	0	0	0.021553	0	0
SACS	26278	broad.mit.edu	37	13	23909544	23909544	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr13:23909544G>A	uc001uon.2	-	10	9060	c.8471C>T	c.(8470-8472)TCA>TTA	p.S2824L	SACS_uc001uoo.2_Missense_Mutation_p.S2677L|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2824					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TGAAAAGCCTGATCTATTACA	0.393000													12	53	---	---	---	---	0	0	0.080935	0	0
UGGT2	55757	broad.mit.edu	37	13	96555252	96555252	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr13:96555252C>G	uc001vmt.2	-	21	2528	c.2358G>C	c.(2356-2358)GAG>GAC	p.E786D		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	786					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TAGCTGTGTTCTCTTCATTTA	0.333000													7	40	---	---	---	---	0	0	0.029380	0	0
FAM179B	23116	broad.mit.edu	37	14	45433228	45433228	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr14:45433228C>T	uc001wvv.2	+	1	1813	c.1604C>T	c.(1603-1605)GCC>GTC	p.A535V	FAM179B_uc001wvw.2_Missense_Mutation_p.A535V|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvq.2_5'Flank|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Missense_Mutation_p.A535V|FAM179B_uc001wvu.2_Missense_Mutation_p.A535V	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	535	HEAT 4.						binding			skin(2)|upper_aerodigestive_tract(1)	3						GAAGCTTTTGCCGTATTGGCA	0.453000													4	145	---	---	---	---	0	0	0.009096	0	0
FCF1	51077	broad.mit.edu	37	14	75190043	75190043	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr14:75190043C>G	uc001xqh.2	+	5	412	c.361C>G	c.(361-363)CTA>GTA	p.L121V	FCF1_uc001xqf.1_Missense_Mutation_p.L106V|FCF1_uc001xqg.2_RNA|FCF1_uc001xqi.2_RNA	NM_015962	NP_057046	Q9Y324	FCF1_HUMAN	FCF1 small subunit	121	PINc.				rRNA processing	nucleolus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0037)		TCGAGTGGCTCTAAGGTAGGA	0.378000													9	32	---	---	---	---	0	0	0.047766	0	0
SERPINA5	5104	broad.mit.edu	37	14	95058528	95058528	+	Silent	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr14:95058528C>T	uc001ydm.2	+	6	1383	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F	SERPINA3_uc001ydo.3_Intron	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	391					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	TTCTGATGTTCATTGTGGATA	0.562000													57	360	---	---	---	---	0	0	0.139131	0	0
CASC4	113201	broad.mit.edu	37	15	44630079	44630079	+	Nonsense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr15:44630079C>G	uc001zto.1	+	5	994	c.695C>G	c.(694-696)TCA>TGA	p.S232*	CASC4_uc001ztp.2_Nonsense_Mutation_p.S232*|CASC4_uc001ztq.2_Nonsense_Mutation_p.S232*|CASC4_uc010bdu.1_RNA	NM_138423	NP_612432	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4 isoform a	232	Lumenal (Potential).					integral to membrane				ovary(1)	1		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		GAAGAACCCTCAAGCAATCAT	0.299000													3	58	---	---	---	---	0	0	0.115264	0	0
DMXL2	23312	broad.mit.edu	37	15	51791873	51791873	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr15:51791873A>G	uc002abf.2	-	18	3773	c.3548T>C	c.(3547-3549)CTT>CCT	p.L1183P	DMXL2_uc010ufy.1_Missense_Mutation_p.L1183P|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1183	WD 9.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TCCCACTGTAAGAATGTGGGA	0.408000													3	40	---	---	---	---	0	0	0.115264	0	0
CCPG1	9236	broad.mit.edu	37	15	55727220	55727220	+	Translation_Start_Site	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr15:55727220G>C	uc002acy.2	-	7	1185	c.-232C>G	c.(-234--230)ATCAA>ATGAA		DYX1C1_uc010ugh.1_Intron|DYX1C1_uc010ugi.1_RNA|DYX1C1_uc002adb.2_Missense_Mutation_p.I310M|DYX1C1_uc002adc.2_Missense_Mutation_p.I310M|DYX1C1_uc002add.2_Missense_Mutation_p.I310M	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2						cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		TATATGCATTGATAGCTGCCA	0.318000													13	75	---	---	---	---	0	0	0.105934	0	0
PRC1	9055	broad.mit.edu	37	15	91523559	91523559	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr15:91523559C>T	uc002bqm.2	-	7	1040	c.883G>A	c.(883-885)GAG>AAG	p.E295K	PRC1_uc002bqn.2_Missense_Mutation_p.E295K|PRC1_uc002bqo.2_Missense_Mutation_p.E295K|PRC1_uc010uqs.1_Missense_Mutation_p.E254K	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	295	Potential.|Dimerization.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					CGAATTGCCTCAATCACTTTC	0.443000													18	90	---	---	---	---	0	0	0.033300	0	0
C15orf51	196968	broad.mit.edu	37	15	100331686	100331686	+	RNA	SNP	T	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr15:100331686T>G	uc010urx.1	-	5		c.2506A>C			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						ACAGTGAGGGTGGAGGCAGAG	0.478000													4	19	---	---	---	---	0	0	0.021553	0	0
GPR114	221188	broad.mit.edu	37	16	57601840	57601840	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr16:57601840C>G	uc002elx.3	+	9	979	c.894C>G	c.(892-894)TTC>TTG	p.F298L	GPR114_uc010vhr.1_Missense_Mutation_p.F298L|GPR114_uc002ely.2_Missense_Mutation_p.F298L	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	298	Helical; Name=2; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						ACATCGCCTTCCTGCTGAGCC	0.612000													6	25	---	---	---	---	0	0	0.021553	0	0
ZFPM1	161882	broad.mit.edu	37	16	88600417	88600417	+	Missense_Mutation	SNP	T	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr16:88600417T>A	uc002fkv.2	+	10	2084	c.2051T>A	c.(2050-2052)CTG>CAG	p.L684Q		NM_153813	NP_722520	Q8IX07	FOG1_HUMAN	zinc finger protein, multitype 1	684	C2HC-type 3.|C2HC-type 2.				blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|transcription factor binding|zinc ion binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0478)		AGCCGCACGCTGTGCGAGGCC	0.502000													3	11	---	---	---	---	0	0	0.115264	0	0
KAT2A	2648	broad.mit.edu	37	17	40271403	40271403	+	Silent	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr17:40271403G>A	uc002hyx.2	-	6	993	c.933C>T	c.(931-933)TAC>TAT	p.Y311Y		NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	311					chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						GAGTGGTTTCGTAGCGGGGGA	0.582000													44	69	---	---	---	---	0	0	0.139131	0	0
EVPL	2125	broad.mit.edu	37	17	74005905	74005905	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr17:74005905G>C	uc002jqi.2	-	22	3609	c.3381C>G	c.(3379-3381)ATC>ATG	p.I1127M	EVPL_uc010wss.1_Missense_Mutation_p.I1149M|EVPL_uc010wst.1_Missense_Mutation_p.I597M	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1127	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCACCGAGCTGATAGCCCGCT	0.642000													18	39	---	---	---	---	0	0	0.033300	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10221422	10221422	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr19:10221422G>A	uc002mna.2	+	11	1081	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	PPAN-P2RY11_uc010xla.1_Missense_Mutation_p.E361K|P2RY11_uc002mnc.2_5'Flank|PPAN_uc002mmz.1_Missense_Mutation_p.E361K|PPAN_uc002mnb.1_Missense_Mutation_p.E308K	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	361					RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			GGGTAGTGATGAAGAGGCCTC	0.602000													7	91	---	---	---	---	0	0	0.038147	0	0
ZNF528	84436	broad.mit.edu	37	19	52919958	52919958	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr19:52919958C>G	uc002pzh.2	+	7	2279	c.1853C>G	c.(1852-1854)TCT>TGT	p.S618C	ZNF528_uc002pzi.2_Missense_Mutation_p.S385C	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	618	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		AGTCACAATTCTGACCTTGCA	0.418000													8	47	---	---	---	---	0	0	0.058154	0	0
DTNB	1838	broad.mit.edu	37	2	25754346	25754346	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:25754346T>C	uc002rgh.2	-	9	1247	c.997A>G	c.(997-999)ATA>GTA	p.I333V	DTNB_uc010yko.1_Missense_Mutation_p.I276V|DTNB_uc010ykp.1_Missense_Mutation_p.I129V|DTNB_uc002rgo.2_Missense_Mutation_p.I154V|DTNB_uc002rgi.2_Missense_Mutation_p.I333V|DTNB_uc002rgj.2_Missense_Mutation_p.I333V|DTNB_uc002rgk.2_Missense_Mutation_p.I333V|DTNB_uc002rgl.2_Missense_Mutation_p.I333V|DTNB_uc002rgq.2_Missense_Mutation_p.I333V|DTNB_uc002rgm.2_Missense_Mutation_p.I333V|DTNB_uc002rgn.2_Missense_Mutation_p.I129V|DTNB_uc002rgr.1_Missense_Mutation_p.I322V|DTNB_uc010ykq.1_Missense_Mutation_p.I186V	NM_021907	NP_068707	O60941	DTNB_HUMAN	dystrobrevin, beta isoform 1	333						cytoplasm	calcium ion binding|zinc ion binding			large_intestine(2)|ovary(2)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACTTACACTATATGTGCAAGG	0.468000													69	57	---	---	---	---	0	0	0.139131	0	0
ZNF512	84450	broad.mit.edu	37	2	27822493	27822493	+	Silent	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:27822493G>A	uc002rla.2	+	4	408	c.321G>A	c.(319-321)CAG>CAA	p.Q107Q	ZNF512_uc010ylv.1_Silent_p.Q28Q|ZNF512_uc010ylw.1_Silent_p.Q106Q|ZNF512_uc002rlb.2_Silent_p.Q28Q|ZNF512_uc010ylx.1_Silent_p.Q28Q|ZNF512_uc002rlc.2_Silent_p.Q28Q|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Silent_p.Q28Q	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	107					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					AACCCAGGCAGGAAGAAGATG	0.408000													4	49	---	---	---	---	0	0	0.009096	0	0
ERLEC1	27248	broad.mit.edu	37	2	54014378	54014378	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:54014378C>G	uc002rxl.2	+	1	311	c.31C>G	c.(31-33)CTG>GTG	p.L11V	ASB3_uc002rxg.1_5'Flank|ASB3_uc002rxh.1_5'Flank|ASB3_uc002rxi.3_Intron|ASB3_uc010yoo.1_5'Flank|ERLEC1_uc002rxm.2_Missense_Mutation_p.L11V|ERLEC1_uc002rxn.2_Missense_Mutation_p.L11V	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	11					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						CGTACGGAGTCTGGTCCCGGG	0.617000													11	43	---	---	---	---	0	0	0.069234	0	0
ERLEC1	27248	broad.mit.edu	37	2	54014410	54014410	+	Silent	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:54014410C>T	uc002rxl.2	+	1	343	c.63C>T	c.(61-63)CTC>CTT	p.L21L	ASB3_uc002rxg.1_5'Flank|ASB3_uc002rxh.1_5'Flank|ASB3_uc002rxi.3_Intron|ASB3_uc010yoo.1_5'Flank|ERLEC1_uc002rxm.2_Silent_p.L21L|ERLEC1_uc002rxn.2_Silent_p.L21L	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	21					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						TACTGGTCCTCTGCGGCCTCC	0.687000													14	64	---	---	---	---	0	0	0.119110	0	0
RIF1	55183	broad.mit.edu	37	2	152320159	152320159	+	Silent	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:152320159G>A	uc002txm.2	+	30	4255	c.4125G>A	c.(4123-4125)GAG>GAA	p.E1375E	RIF1_uc002txl.2_Silent_p.E1375E|RIF1_uc002txn.2_Silent_p.E1375E|RIF1_uc002txo.2_Silent_p.E1375E|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1375					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		CTGTAGAGGAGAAAAATGTAG	0.353000													18	54	---	---	---	---	0	0	0.033300	0	0
FAP	2191	broad.mit.edu	37	2	163039925	163039925	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:163039925C>G	uc002ucd.2	-	21	2076	c.1868G>C	c.(1867-1869)TGG>TCG	p.W623S	FAP_uc010fpc.2_Missense_Mutation_p.W172S|FAP_uc010zct.1_Missense_Mutation_p.W598S|FAP_uc010fpd.2_Missense_Mutation_p.W102S	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	623	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						ACAACTCACCCAGCCCCATAT	0.303000													3	108	---	---	---	---	0	0	0.009096	0	0
PPIG	9360	broad.mit.edu	37	2	170493789	170493789	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:170493789C>T	uc002uez.2	+	14	2241	c.2021C>T	c.(2020-2022)TCA>TTA	p.S674L	PPIG_uc010fpx.2_Missense_Mutation_p.S659L|PPIG_uc010fpy.2_Missense_Mutation_p.S667L|PPIG_uc002ufb.2_Missense_Mutation_p.S674L|PPIG_uc002ufd.2_Missense_Mutation_p.S671L	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	674					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	CATAATAGCTCAAATAACAGC	0.348000													16	51	---	---	---	---	0	0	0.033300	0	0
ATG9A	79065	broad.mit.edu	37	2	220089873	220089873	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:220089873G>A	uc002vke.1	-	7	622	c.436C>T	c.(436-438)CGG>TGG	p.R146W	ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Missense_Mutation_p.R146W	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	146	Helical; (Potential).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTGATAAGCCGGTGGATCCAG	0.522000													4	93	---	---	---	---	0	0	0.009096	0	0
NGEF	25791	broad.mit.edu	37	2	233757743	233757743	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr2:233757743T>C	uc002vts.2	-	7	1255	c.1007A>G	c.(1006-1008)GAG>GGG	p.E336G	NGEF_uc010zmm.1_Missense_Mutation_p.E59G|NGEF_uc010fyg.1_Missense_Mutation_p.E244G	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	336	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		CATCCGGTGCTCCAGCTCCAG	0.592000													3	63	---	---	---	---	0	0	0.014758	0	0
NFATC2	4773	broad.mit.edu	37	20	50071158	50071158	+	Silent	SNP	G	A	A	rs146686251	by1000genomes	TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr20:50071158G>A	uc002xwd.2	-	6	1996	c.1776C>T	c.(1774-1776)GGC>GGT	p.G592G	NFATC2_uc002xwc.2_Silent_p.G592G|NFATC2_uc010zyv.1_Silent_p.G373G|NFATC2_uc010zyw.1_Silent_p.G373G|NFATC2_uc010zyx.1_Silent_p.G572G|NFATC2_uc010zyy.1_Silent_p.G373G|NFATC2_uc010zyz.1_Silent_p.G373G|NFATC2_uc002xwe.2_Silent_p.G572G|hsa-mir-3194|MI0014239_5'Flank	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	592					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					TTTGCTGGCCGCCATAGACCA	0.502000													5	171	---	---	---	---	0	0	0.021553	0	0
C20orf197	284756	broad.mit.edu	37	20	58645884	58645884	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr20:58645884G>T	uc002ybj.1	+	4	608	c.302G>T	c.(301-303)AGT>ATT	p.S101I		NM_173644	NP_775915	Q8N268	CT197_HUMAN	hypothetical protein LOC284756	101										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(7;2.33e-09)			gctctgcaaagttctgcacca	0.144000													3	11	---	---	---	---	6.4e-05	7.48936e-05	0.115264	1	0
GRIK1	2897	broad.mit.edu	37	21	30961208	30961208	+	Missense_Mutation	SNP	T	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr21:30961208T>G	uc002yno.1	-	11	1984	c.1520A>C	c.(1519-1521)CAG>CCG	p.Q507P	GRIK1_uc002ynn.2_Missense_Mutation_p.Q492P|GRIK1_uc011acs.1_Missense_Mutation_p.Q507P|GRIK1_uc011act.1_Intron|GRIK1_uc010glq.1_Missense_Mutation_p.Q350P	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	507	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TTTGTCATTCTGGGCCCCATA	0.368000													15	78	---	---	---	---	0	0	0.038395	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999968	45999968	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr21:45999968C>G	uc002zfl.1	-	1	514	c.488G>C	c.(487-489)TGC>TCC	p.C163S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	163	14.|22 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGAGGAGGTGCAGCAAGTCGG	0.602000													26	163	---	---	---	---	0	0	0.108266	0	0
LZTR1	8216	broad.mit.edu	37	22	21340177	21340177	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr22:21340177C>G	uc002zto.2	+	3	414	c.311C>G	c.(310-312)TCC>TGC	p.S104C	LZTR1_uc002ztn.2_Missense_Mutation_p.S63C|LZTR1_uc011ahy.1_Intron|LZTR1_uc010gsr.1_5'Flank	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	104	Kelch 1.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			AAAGACTGCTCCTGGTGCAGG	0.582000													6	32	---	---	---	---	0	0	0.038147	0	0
LOC96610	96610	broad.mit.edu	37	22	22661187	22661187	+	RNA	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr22:22661187G>A	uc011aim.1	+	27		c.1613G>A			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_Intron|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						CCCCCACCCCGTCATGTACAG	0.413000													3	26	---	---	---	---	0	0	0.115264	0	0
LOC96610	96610	broad.mit.edu	37	22	22661208	22661208	+	RNA	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr22:22661208C>T	uc011aim.1	+	27		c.1634C>T			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						CTGAATCATGCAGAATTTGAA	0.408000													3	29	---	---	---	---	0	0	0.115264	0	0
LOC96610	96610	broad.mit.edu	37	22	23006960	23006961	+	RNA	DNP	CC	AT	AT			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr22:23006960_23006961CC>AT	uc011aim.1	+	119		c.7563_7564CC>AT								Parts of antibodies, mostly variable regions.												0						GGGCTCTGCTCCTCCTCACCCT	0.629000													3	13	---	---	---	---	0	0	0.115264	0	0
NCKIPSD	51517	broad.mit.edu	37	3	48716069	48716069	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr3:48716069G>C	uc003cun.2	-	12	1987	c.1893C>G	c.(1891-1893)TTC>TTG	p.F631L	NCKIPSD_uc003cum.2_Missense_Mutation_p.F624L	NM_016453	NP_057537	Q9NZQ3	SPN90_HUMAN	NCK interacting protein with SH3 domain isoform	631					cytoskeleton organization|NLS-bearing substrate import into nucleus|signal transduction	intermediate filament|nucleus	cytoskeletal protein binding|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTGTGTGGTAGAAGATGGCAG	0.582000													12	58	---	---	---	---	0	0	0.093190	0	0
NISCH	11188	broad.mit.edu	37	3	52526232	52526232	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr3:52526232G>A	uc011beg.1	+	22	4321	c.4249G>A	c.(4249-4251)GAC>AAC	p.D1417N	NISCH_uc003ded.3_Missense_Mutation_p.D1417N|NISCH_uc003dee.3_Missense_Mutation_p.D906N|NISCH_uc003deg.1_Intron|NISCH_uc003deh.3_Missense_Mutation_p.D166N	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1417					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CCGGGACCTGGACCGAGTGCT	0.637000													27	112	---	---	---	---	0	0	0.091800	0	0
NISCH	11188	broad.mit.edu	37	3	52526412	52526412	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr3:52526412G>A	uc011beg.1	+	22	4501	c.4429G>A	c.(4429-4431)GAG>AAG	p.E1477K	NISCH_uc003ded.3_Missense_Mutation_p.E1477K|NISCH_uc003dee.3_Missense_Mutation_p.E966K|NISCH_uc003deg.1_Intron|NISCH_uc003deh.3_Missense_Mutation_p.E226K|STAB1_uc003dei.1_5'Flank|STAB1_uc003dej.2_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1477					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CCCCAGTGCTGAGAGCAGAGA	0.662000													39	105	---	---	---	---	0	0	0.069456	0	0
NISCH	11188	broad.mit.edu	37	3	52526419	52526419	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr3:52526419G>A	uc011beg.1	+	22	4508	c.4436G>A	c.(4435-4437)AGA>AAA	p.R1479K	NISCH_uc003ded.3_Missense_Mutation_p.R1479K|NISCH_uc003dee.3_Missense_Mutation_p.R968K|NISCH_uc003deg.1_Intron|NISCH_uc003deh.3_Missense_Mutation_p.R228K|STAB1_uc003dei.1_5'Flank|STAB1_uc003dej.2_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1479					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		GCTGAGAGCAGAGAGAAGCTC	0.657000													32	92	---	---	---	---	0	0	0.134883	0	0
SLC33A1	9197	broad.mit.edu	37	3	155571317	155571317	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr3:155571317T>C	uc003fan.3	-	1	851	c.470A>G	c.(469-471)TAT>TGT	p.Y157C	SLC33A1_uc003fao.1_Missense_Mutation_p.Y157C	NM_004733	NP_004724	O00400	ACATN_HUMAN	acetyl-coenzyme A transporter	157	Helical; (Potential).				cell death|transmembrane transport	endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane|membrane fraction	acetyl-CoA transporter activity			ovary(2)|large_intestine(1)|pancreas(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AGTGGATAAATAGATCATGAA	0.488000													3	59	---	---	---	---	0	0	0.009096	0	0
RBPJ	3516	broad.mit.edu	37	4	26432321	26432321	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr4:26432321G>A	uc003grx.1	+	12	1431	c.1195G>A	c.(1195-1197)GAG>AAG	p.E399K	RBPJ_uc003gry.1_Missense_Mutation_p.E384K|RBPJ_uc003grz.1_Missense_Mutation_p.E399K|RBPJ_uc003gsa.1_Missense_Mutation_p.E385K|RBPJ_uc003gsb.1_Missense_Mutation_p.E386K|RBPJ_uc003gsc.1_Missense_Mutation_p.R350K|uc003gsd.2_5'Flank	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	399	IPT/TIG.				DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				CAGGTGTGGAGAGAGTATGCT	0.408000													5	56	---	---	---	---	0	0	0.021553	0	0
GIN1	54826	broad.mit.edu	37	5	102444350	102444350	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr5:102444350G>C	uc003koa.1	-	2	144	c.62C>G	c.(61-63)ACT>AGT	p.T21S	GIN1_uc003kob.1_5'UTR|GIN1_uc003koc.1_Missense_Mutation_p.T21S	NM_017676	NP_060146	Q9NXP7	GIN1_HUMAN	zinc finger, H2C2 domain containing	21					DNA integration		DNA binding			ovary(1)|skin(1)	2		all_cancers(142;3.23e-07)|all_epithelial(76;3.64e-10)|Prostate(80;0.00914)|Ovarian(225;0.0139)|Lung NSC(167;0.0212)|Colorectal(57;0.0249)|all_lung(232;0.0283)		Epithelial(69;3.57e-14)|COAD - Colon adenocarcinoma(37;0.00794)		ATATTCACCAGTTCGTTTGTA	0.328000													3	46	---	---	---	---	0	0	0.115264	0	0
PKHD1	5314	broad.mit.edu	37	6	51613023	51613023	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr6:51613023G>A	uc003pah.1	-	58	9667	c.9391C>T	c.(9391-9393)CAT>TAT	p.H3131Y	PKHD1_uc010jzn.1_Missense_Mutation_p.H1114Y|PKHD1_uc003pai.2_Missense_Mutation_p.H3131Y	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3131	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TTATAGAGATGAAGGCCATGA	0.458000													5	292	---	---	---	---	0	0	0.021553	0	0
USP45	85015	broad.mit.edu	37	6	99924037	99924037	+	Silent	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr6:99924037C>G	uc003ppx.2	-	9	1448	c.915G>C	c.(913-915)GTG>GTC	p.V305V	USP45_uc003ppw.2_Silent_p.V43V|USP45_uc003ppy.2_RNA|USP45_uc010kcq.1_Silent_p.V305V	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	305					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		CTTCTGTCCTCACTGCATCCA	0.333000													8	45	---	---	---	---	0	0	0.038147	0	0
SESN1	27244	broad.mit.edu	37	6	109322623	109322623	+	Silent	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr6:109322623G>A	uc003pst.3	-	3	329	c.237C>T	c.(235-237)GGC>GGT	p.G79G	SESN1_uc003psu.2_Silent_p.G138G	NM_014454	NP_055269	Q9Y6P5	SESN1_HUMAN	sestrin 1	79					cell cycle arrest|negative regulation of cell proliferation|response to DNA damage stimulus	nucleus				ovary(1)	1		all_cancers(87;6.45e-05)|Acute lymphoblastic leukemia(125;3.55e-10)|all_hematologic(75;1.68e-07)|all_epithelial(87;0.0106)|Colorectal(196;0.0637)		Epithelial(106;0.0014)|BRCA - Breast invasive adenocarcinoma(108;0.00146)|all cancers(137;0.0031)|OV - Ovarian serous cystadenocarcinoma(136;0.0117)		TATCCAAACGGCCCAAAGCAG	0.403000													3	33	---	---	---	---	0	0	0.115264	0	0
IFNGR1	3459	broad.mit.edu	37	6	137519644	137519644	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr6:137519644G>T	uc003qho.2	-	7	1097	c.994C>A	c.(994-996)CCA>ACA	p.P332T	IFNGR1_uc011edm.1_Missense_Mutation_p.P304T	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	332	Cytoplasmic (Potential).				regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	TGCATGCCTGGAACTGTTGCT	0.413000													22	32	---	---	---	---	1.9806e-07	2.39413e-07	0.069288	1	0
ABCB5	340273	broad.mit.edu	37	7	20782555	20782555	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr7:20782555G>A	uc003suw.3	+	16	2291	c.1745G>A	c.(1744-1746)CGC>CAC	p.R582H	ABCB5_uc010kuh.2_Missense_Mutation_p.R1027H	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	582	Cytoplasmic (Potential).|ABC transporter 2.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TATCCATGTCGCCCAGATGTT	0.468000													7	49	---	---	---	---	0	0	0.038147	0	0
SEMA3A	10371	broad.mit.edu	37	7	83764225	83764225	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr7:83764225G>C	uc003uhz.2	-	2	470	c.155C>G	c.(154-156)GCC>GGC	p.A52G		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	52	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						GGAGCTGTTGGCCAAGCCATT	0.393000													22	34	---	---	---	---	0	0	0.069288	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	28	---	---	---	---	0	0	0.076483	0	0
ZNF786	136051	broad.mit.edu	37	7	148767890	148767890	+	Silent	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr7:148767890C>T	uc003wfh.2	-	4	2111	c.1974G>A	c.(1972-1974)GTG>GTA	p.V658V	ZNF786_uc011kuk.1_Silent_p.V621V|ZNF786_uc003wfi.2_Silent_p.V572V	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	658	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TTGAGTGTTTCACAAAGCCCT	0.572000													12	88	---	---	---	---	0	0	0.105934	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439358	150439358	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr7:150439358G>T	uc003whr.1	+	3	483	c.131G>T	c.(130-132)GGG>GTG	p.G44V	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	44	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGTGCCACAGGGAACAGCATC	0.527000													9	52	---	---	---	---	1.12685e-05	1.34732e-05	0.047766	1	0
LONRF1	91694	broad.mit.edu	37	8	12594452	12594452	+	Silent	SNP	C	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr8:12594452C>G	uc003wwd.1	-	5	1374	c.1311G>C	c.(1309-1311)GTG>GTC	p.V437V	LONRF1_uc011kxv.1_Silent_p.V37V|LONRF1_uc010lsp.1_Silent_p.V37V	NM_152271	NP_689484	Q17RB8	LONF1_HUMAN	LON peptidase N-terminal domain and ring finger	437					proteolysis		ATP-dependent peptidase activity|zinc ion binding			ovary(1)	1				READ - Rectum adenocarcinoma(644;0.236)		CATTTACAATCACATCCTGTT	0.318000													12	26	---	---	---	---	0	0	0.080935	0	0
PNOC	5368	broad.mit.edu	37	8	28196729	28196729	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr8:28196729G>A	uc010lva.2	+	3	507	c.299G>A	c.(298-300)CGA>CAA	p.R100Q	PNOC_uc003xgp.2_Missense_Mutation_p.R100Q|PNOC_uc011lau.1_Missense_Mutation_p.R36Q	NM_006228	NP_006219	Q13519	PNOC_HUMAN	prepronociceptin precursor	100					neuropeptide signaling pathway|sensory perception|synaptic transmission	extracellular region	neuropeptide hormone activity|opioid peptide activity			central_nervous_system(1)	1		Ovarian(32;0.000953)		KIRC - Kidney renal clear cell carcinoma(542;0.104)|Kidney(114;0.125)|Colorectal(74;0.145)|BRCA - Breast invasive adenocarcinoma(99;0.245)		CGAATGCCCCGAGTCCGGAGC	0.632000													5	40	---	---	---	---	0	0	0.014758	0	0
INTS9	55756	broad.mit.edu	37	8	28635438	28635438	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr8:28635438G>C	uc003xha.2	-	13	1602	c.1303C>G	c.(1303-1305)CCT>GCT	p.P435A	INTS9_uc011lav.1_Missense_Mutation_p.P411A|INTS9_uc011law.1_Missense_Mutation_p.P414A|INTS9_uc011lax.1_Missense_Mutation_p.P328A|INTS9_uc010lvc.2_RNA	NM_018250	NP_060720	Q9NV88	INT9_HUMAN	integrator complex subunit 9 isoform 1	435					snRNA processing	integrator complex	protein binding			central_nervous_system(1)|pancreas(1)	2		Ovarian(32;0.0439)		KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.152)		GGCTGGTAAGGAGCCAGGGCT	0.502000													8	43	---	---	---	---	0	0	0.058154	0	0
CHD7	55636	broad.mit.edu	37	8	61707670	61707670	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr8:61707670A>G	uc003xue.2	+	4	2699	c.2222A>G	c.(2221-2223)GAG>GGG	p.E741G		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	741					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity	p.556_871dup(1)		ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GAAGAAGATGAGGACCCAGGT	0.433000													3	136	---	---	---	---	0	0	0.009096	0	0
GRINA	2907	broad.mit.edu	37	8	145066705	145066705	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr8:145066705C>T	uc003zan.1	+	6	1061	c.895C>T	c.(895-897)CTC>TTC	p.L299F	GRINA_uc003zao.1_Missense_Mutation_p.L299F|GRINA_uc003zap.1_Missense_Mutation_p.L299F	NM_001009184	NP_001009184	Q7Z429	GRINA_HUMAN	glutamate receptor, ionotropic, N-methyl	299	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTTCGCCATTCTCTGCATCTT	0.617000													13	24	---	---	---	---	0	0	0.132662	0	0
ZNF250	58500	broad.mit.edu	37	8	146107607	146107607	+	Missense_Mutation	SNP	G	T	T	rs2953878		TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr8:146107607G>T	uc003zeq.3	-	6	1093	c.976C>A	c.(976-978)CTG>ATG	p.L326M	COMMD5_uc010mgf.2_Intron|ZNF250_uc003zer.3_Missense_Mutation_p.L321M|ZNF250_uc010mgg.2_Missense_Mutation_p.L321M	NM_021061	NP_066405	P15622	ZN250_HUMAN	zinc finger protein 250 isoform a	326	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;2.53e-38)|OV - Ovarian serous cystadenocarcinoma(54;4.07e-38)|all cancers(56;2.27e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.0654)		TGGCTCCGCAGAACAGTGCTA	0.542000													10	14	---	---	---	---	1.08611e-07	1.32747e-07	0.080935	1	0
EXOSC3	51010	broad.mit.edu	37	9	37783998	37783998	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr9:37783998G>C	uc004aal.2	-	2	413	c.387C>G	c.(385-387)TTC>TTG	p.F129L	EXOSC3_uc010mly.1_Missense_Mutation_p.F129L|EXOSC3_uc004aam.2_Missense_Mutation_p.F129L	NM_016042	NP_057126	Q9NQT5	EXOS3_HUMAN	exosome component 3 isoform 1	129					CUT catabolic process|DNA deamination|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|isotype switching|rRNA processing	cytoplasmic exosome (RNase complex)|cytosol|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5'-exoribonuclease activity|protein binding|RNA binding			breast(2)	2				GBM - Glioblastoma multiforme(29;0.00771)|Lung(182;0.221)		CATCAACTTTGAATATATCTC	0.383000													15	76	---	---	---	---	0	0	0.119110	0	0
FANCC	2176	broad.mit.edu	37	9	97933399	97933399	+	Silent	SNP	G	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr9:97933399G>C	uc004avh.2	-	6	745	c.483C>G	c.(481-483)CTC>CTG	p.L161L	FANCC_uc004avi.3_Silent_p.L161L|FANCC_uc010mrm.1_RNA|FANCC_uc011lul.1_RNA	NM_000136	NP_000127	Q00597	FANCC_HUMAN	Fanconi anemia, complementation group C	161					protein complex assembly	cytosol|nucleoplasm	protein binding			kidney(1)	1		Acute lymphoblastic leukemia(62;0.138)				GATTCTCTCTGAGTTCAGACG	0.363000			D|Mis|N|F|S			AML|leukemia		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				7	26	---	---	---	---	0	0	0.038147	0	0
WDR34	89891	broad.mit.edu	37	9	131397416	131397416	+	Silent	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr9:131397416G>A	uc004bvq.1	-	6	1060	c.936C>T	c.(934-936)TTC>TTT	p.F312F	WDR34_uc004bvs.1_Silent_p.F303F|WDR34_uc004bvr.1_Silent_p.F284F	NM_052844	NP_443076	Q96EX3	WDR34_HUMAN	WD repeat domain 34	312						cytoplasm				central_nervous_system(2)|skin(1)	3						TGACCAGGGCGAAGCCCTCTG	0.672000											OREG0019522	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	47	---	---	---	---	0	0	0.105934	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071154	141071154	+	Missense_Mutation	SNP	T	C	C	rs150819761	by1000genomes	TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr9:141071154T>C	uc004com.2	+	4	818	c.557T>C	c.(556-558)GTC>GCC	p.V186A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GTGAACATGGTCCCGTTTCCC	0.632000													8	41	---	---	---	---	0	0	0.038147	0	0
PLCXD1	55344	broad.mit.edu	37	X	209756	209756	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chrX:209756T>C	uc004cpc.2	+	6	916	c.604T>C	c.(604-606)TAT>CAT	p.Y202H	PLCXD1_uc011mgx.1_RNA	NM_018390	NP_060860	Q9NUJ7	PLCX1_HUMAN	phosphatidylinositol-specific phospholipase C, X	202	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process		phospholipase C activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CATCGTCTCCTATGAAGACGA	0.632000													3	49	---	---	---	---	0	0	0.115264	0	0
DOCK11	139818	broad.mit.edu	37	X	117819739	117819739	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chrX:117819739G>A	uc004eqp.2	+	53	6254	c.6191G>A	c.(6190-6192)GGT>GAT	p.G2064D	DOCK11_uc004eqq.2_Missense_Mutation_p.G1843D	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	2064					blood coagulation	cytosol	GTP binding			ovary(3)	3						AGTGACCGAGGTTATGGTTCC	0.403000													71	89	---	---	---	---	0	0	0.139131	0	0
LOC200030	200030	broad.mit.edu	37	1	148349431	148349432	+	5'Flank	INS	-	G	G	rs67020224		TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr1:148349431_148349432insG	uc001eqf.2	-						LOC200030_uc001eqe.2_5'Flank|LOC200030_uc001eqg.2_5'Flank|NBPF14_uc009wkf.1_5'Flank|uc001erd.3_5'Flank|uc001erc.3_5'Flank|uc010paj.1_5'Flank|uc010pav.1_5'Flank|uc010paw.1_5'Flank	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672							cytoplasm					0						GGGCTGACACTGGGGGGCCAGA	0.559													6	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262814	130262814	+	IGR	DEL	A	-	-	rs142355007		TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr10:130262814delA								MKI67 (338346 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.025													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	135455131	135455131	+	IGR	DEL	C	-	-			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr10:135455131delC								FRG2B (14832 upstream) : LOC653544 (35148 downstream)																							TACAAAAAAACGATGAGGAAA	0.343													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	1813668	1813668	+	IGR	DEL	A	-	-			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr11:1813668delA								CTSD (28446 upstream) : SYT8 (35041 downstream)																							actctgactcaaaaaaaaaaa	0.045													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	2016292	2016293	+	IGR	INS	-	C	C			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr11:2016292_2016293insC								LOC100133545 (5142 upstream) : H19 (113 downstream)																							CCACCCTGGAACCCCCATCCCC	0.668													3	6	---	---	---	---					
DCHS1	8642	broad.mit.edu	37	11	6662745	6662746	+	In_Frame_Ins	INS	-	CAG	CAG			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr11:6662745_6662746insCAG	uc001mem.1	-	2	509_510	c.99_100insCTG	c.(97-102)insCTG	p.33_34insL		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	33_34					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACCCCAGCCCCcagcagcagca	0.530													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	62399390	62399391	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr17:62399390_62399391delGT	uc002jef.1	-	1	49_50	c.40_41delAC	c.(40-42)ACCfs	p.T14fs						Homo sapiens cDNA FLJ34100 fis, clone FCBBF3007597.																		ATACAACTCGGTGTGTGTGTGT	0.342													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	18151964	18151965	+	IGR	INS	-	CG	CG	rs10420167		TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr19:18151964_18151965insCG								ARRDC2 (27059 upstream) : IL12RB1 (18406 downstream)																							AGGcacacacacatacacacac	0.238													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	168576486	168576486	+	IGR	DEL	T	-	-			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr3:168576486delT								C3orf50 (28114 upstream) : MECOM (224801 downstream)																							CTCAGGCTCCTTCTCACTGGT	0.468													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	49297743	49297743	+	IGR	DEL	A	-	-	rs140564135		TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr8:49297743delA								UBE2V2 (323291 upstream) : EFCAB1 (325608 downstream)																							CGGAGGCAGGAAAAAAAAAAG	0.428													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68426353	68426353	+	IGR	DEL	G	-	-			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr9:68426353delG								FAM27B (632164 upstream) : MIR1299 (575886 downstream)																							TCTTGAAGGCGGTGTTCCTCA	0.313													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	99685055	99685056	+	IGR	INS	-	A	A			TCGA-ET-A2MY-01A-11D-A18F-08	TCGA-ET-A2MY-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a1dfb93-1d3a-4375-9761-d0855e467838	37a19a61-8465-457c-938e-67993fcc4646	g.chr9:99685055_99685056insA								LOC441454 (12319 upstream) : FAM22G (5536 downstream)																							gactccgtctcaaaaaaaaaaa	0.178													4	7	---	---	---	---					
