Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DMRTB1	63948	broad.mit.edu	37	1	53927304	53927304	+	Missense_Mutation	SNP	C	A	A			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr1:53927304C>A	uc001cvq.1	+	2	791	c.736C>A	c.(736-738)CAA>AAA	p.Q246K		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	246	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						CAGCCAGTACCAAGGCGGAGG	0.662000													19	20					1.01871e-10	5.74183e-10	0.00121646	1	0
C1orf146	388649	broad.mit.edu	37	1	92711147	92711147	+	Silent	SNP	T	G	G			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr1:92711147T>G	uc001doq.2	+	6	531	c.459T>G	c.(457-459)GCT>GCG	p.A153A	C1orf146_uc010ote.1_Silent_p.A94A	NM_001012425	NP_001012425	Q5VVC0	CA146_HUMAN	hypothetical protein LOC388649	153										ovary(1)	1		all_lung(203;0.00528)|Lung NSC(277;0.0193)		all cancers(265;0.00846)|Epithelial(280;0.0952)		TGATAACAGCTAAAGCTTACA	0.328000													23	38					0	0	0.00229938	0	0
ADAR	103	broad.mit.edu	37	1	154574423	154574423	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr1:154574423C>T	uc001ffh.2	-	2	895	c.695G>A	c.(694-696)AGA>AAA	p.R232K	ADAR_uc001ffj.2_Missense_Mutation_p.R232K|ADAR_uc001ffi.2_Missense_Mutation_p.R232K|ADAR_uc001ffk.2_5'UTR|ADAR_uc001ffl.1_5'UTR	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	232					adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		TGTGGAGTTTCTGTCTTCCGG	0.527000													32	86					0	0	0.00209593	0	0
EDEM3	80267	broad.mit.edu	37	1	184671950	184671950	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr1:184671950T>C	uc010pok.1	-	19	2645	c.2384A>G	c.(2383-2385)GAT>GGT	p.D795G	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Missense_Mutation_p.D795G	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	795					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						CTTACCTCGATCTTTTGCTTT	0.373000													16	34					0	0	0.00400662	0	0
ITGA8	8516	broad.mit.edu	37	10	15688984	15688984	+	Silent	SNP	T	C	C			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr10:15688984T>C	uc001ioc.1	-	12	1068	c.1068A>G	c.(1066-1068)GAA>GAG	p.E356E	ITGA8_uc010qcb.1_Silent_p.E341E	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	356	Extracellular (Potential).|FG-GAP 5.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TTTGCCCTACTTCTCTGGGGT	0.502000													8	60					0	0	0.00307968	0	0
OR10A7	121364	broad.mit.edu	37	12	55615054	55615054	+	Silent	SNP	T	A	A			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr12:55615054T>A	uc010spf.1	+	1	246	c.246T>A	c.(244-246)CTT>CTA	p.L82L		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						CAAAAATGCTTGTAGATCTAG	0.413000													90	123					0	0	0.00361006	0	0
SLC35E3	55508	broad.mit.edu	37	12	69140181	69140182	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr12:69140181_69140182GC>TT	uc001suh.2	+	1	246_247	c.24_25GC>TT	c.(22-27)GTGCGG>GTTTGG	p.R9W		NM_018656	NP_061126	Q7Z769	S35E3_HUMAN	solute carrier family 35, member E2	9						integral to membrane					0	Breast(13;2.31e-06)|Renal(347;0.0684)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00372)			TGGACCGAGTGCGGGGCCACTG	0.634000													13	12					0	0	6.4e-05	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102471238	102471238	+	Missense_Mutation	SNP	C	A	A			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr14:102471238C>A	uc001yks.2	+	25	5353	c.5189C>A	c.(5188-5190)GCA>GAA	p.A1730E		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1730	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TTTGGTAAAGCAACTTCAATT	0.418000													27	35					1.32003e-05	6.54735e-05	0.000878237	1	0
ADAM6	8755	broad.mit.edu	37	14	106967198	106967198	+	RNA	SNP	C	T	T			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr14:106967198C>T	uc010tyt.1	-	201		c.9243G>A								Parts of antibodies, mostly variable regions.												0						TTGATTATTCCCATCCACTCA	0.547000													34	90					0	0	0.0024448	0	0
ZNF668	79759	broad.mit.edu	37	16	31072858	31072858	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr16:31072858G>A	uc010caf.2	-	3	1748	c.1391C>T	c.(1390-1392)CCG>CTG	p.P464L	ZNF668_uc002eao.2_Missense_Mutation_p.P464L	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	464					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						ACCTGACTCCGGGGGCAGCCC	0.697000													31	65					0	0	0.00375469	0	0
KRTCAP3	200634	broad.mit.edu	37	2	27666263	27666263	+	Splice_Site	SNP	A	C	C			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr2:27666263A>C	uc002rks.2	+	5	498	c.481_splice	c.e5-2	p.D161_splice	KRTCAP3_uc010ylr.1_Splice_Site_p.D161_splice|KRTCAP3_uc002rkt.2_Splice_Site_p.D143_splice	NM_173853	NP_776252	Q53RY4	KCP3_HUMAN	keratinocyte associated protein 3							integral to membrane					0	Acute lymphoblastic leukemia(172;0.155)					CTTGCTTTTCAGGATACAGCC	0.517000													48	74					0	0	0.00361006	0	0
LOC728323	728323	broad.mit.edu	37	2	243056818	243056818	+	RNA	SNP	C	T	T	rs140719525	by1000genomes	TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr2:243056818C>T	uc010zpd.1	+	3		c.279C>T			LOC728323_uc010zpe.1_RNA|LOC728323_uc010zpf.1_RNA|LOC728323_uc010zpg.1_Intron	NR_024437				Homo sapiens cDNA FLJ60027 complete cds, moderately similar to F-box only protein 25.												0						TGGAGAAATACTCAATAATGA	0.269000													4	33					0	0	0.000602214	0	0
FRG1B	284802	broad.mit.edu	37	20	29628300	29628300	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr20:29628300G>A	uc010ztl.1	+	3	244	c.212G>A	c.(211-213)AGT>AAT	p.S71N	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23N					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAGCAAAAAGTAAAACAGCA	0.358000													9	111					0	0	0.000978159	0	0
LOC96610	96610	broad.mit.edu	37	22	22661208	22661208	+	RNA	SNP	C	T	T			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr22:22661208C>T	uc011aim.1	+	27		c.1634C>T			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						CTGAATCATGCAGAATTTGAA	0.408000													7	46					0	0	0.00307968	0	0
TTLL3	26140	broad.mit.edu	37	3	9876847	9876847	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr3:9876847G>C	uc003btg.2	+	13	2209	c.1993G>C	c.(1993-1995)GAA>CAA	p.E665Q	ARPC4_uc003btc.1_Intron|TTLL3_uc003btd.3_3'UTR|TTLL3_uc003btf.3_3'UTR|TTLL3_uc003bth.3_3'UTR|TTLL3_uc011atj.1_3'UTR|TTLL3_uc003btj.3_3'UTR|TTLL3_uc003bti.3_3'UTR	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	665					axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					TTTGAAGTCGGAACAATTCCT	0.587000													16	55					0	0	0.00400662	0	0
ATP2B2	491	broad.mit.edu	37	3	10413502	10413502	+	Silent	SNP	G	C	C			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr3:10413502G>C	uc003bvt.2	-	12	2089	c.1650C>G	c.(1648-1650)ACC>ACG	p.T550T	ATP2B2_uc003bvv.2_Silent_p.T505T|ATP2B2_uc003bvw.2_Silent_p.T505T|ATP2B2_uc010hdo.2_Silent_p.T255T	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	550	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CCAGAATCTTGGTGGTGTAGG	0.532000													12	31					0	0	0.000978159	0	0
IL7R	3575	broad.mit.edu	37	5	35874644	35874644	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr5:35874644G>T	uc003jjs.2	+	6	889	c.800G>T	c.(799-801)AGG>ATG	p.R267M	IL7R_uc011coo.1_Intron|IL7R_uc011cop.1_Intron	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	267	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TGGAAAAAAAGGTGACCTTCT	0.423000													33	51					5.09552e-08	2.74715e-07	0.00209593	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				23	36					0	0	0.00332997	0	0
CSMD3	114788	broad.mit.edu	37	8	113358377	113358377	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr8:113358377A>G	uc003ynu.2	-	41	6550	c.6391T>C	c.(6391-6393)TAT>CAT	p.Y2131H	CSMD3_uc003yns.2_Missense_Mutation_p.Y1333H|CSMD3_uc003ynt.2_Missense_Mutation_p.Y2091H|CSMD3_uc011lhx.1_Missense_Mutation_p.Y2027H	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2131	Extracellular (Potential).|CUB 12.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CTGCTGGGATAGTTTCCAGGA	0.388000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			41	62					0	0	0.00195071	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070768	141070768	+	Silent	SNP	C	T	T	rs4609262	by1000genomes	TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr9:141070768C>T	uc004com.2	+	4	432	c.171C>T	c.(169-171)TGC>TGT	p.C57C	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GCTGTGACTGCCTGCAGGGTT	0.617000													3	17					0	0	0.00024832	0	0
TRO	7216	broad.mit.edu	37	X	54955736	54955736	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chrX:54955736G>T	uc004dtq.2	+	12	2686	c.2579G>T	c.(2578-2580)AGT>ATT	p.S860I	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Missense_Mutation_p.S391I|TRO_uc004dtw.2_Missense_Mutation_p.S463I|TRO_uc004dtx.2_Missense_Mutation_p.S243I	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	860	8; approximate.|62 X 10 AA approximate tandem repeats.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						GCTGGCTTTAGTGGTGTACTC	0.562000													15	24					3.52763e-06	1.82261e-05	0.000566183	1	0
FOXR2	139628	broad.mit.edu	37	X	55650232	55650232	+	Missense_Mutation	SNP	T	A	A			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chrX:55650232T>A	uc004duo.2	+	1	400	c.88T>A	c.(88-90)TTA>ATA	p.L30I		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	30					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						GAGGAATGAGTTATTTCTGCC	0.468000													27	56					0	0	0.00209593	0	0
Unknown	0	broad.mit.edu	37	2	96517784	96517786	+	IGR	DEL	TAA	-	-	rs113889919		TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr2:96517784_96517786delTAA								TRIM43 (252317 upstream) : LOC729234 (158513 downstream)																							AAAGACATACTAATTATCATAAC	0.291													4	8	---	---	---	---					
SLC35F1	222553	broad.mit.edu	37	6	118228990	118228992	+	In_Frame_Del	DEL	GCG	-	-			TCGA-ET-A39P-01A-21D-A19J-08	TCGA-ET-A39P-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	34172376-3070-445a-af3c-29481e93ac41	0ebea3ce-cb3b-4026-98a1-486b6d1e2e06	g.chr6:118228990_118228992delGCG	uc003pxx.3	+	1	302_304	c.101_103delGCG	c.(100-105)AGCGGC>AGC	p.G38del		NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	38					transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		GCCGAGGGCAGCGGCGGCGGCGG	0.621													3	4	---	---	---	---					
