Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			39	71	---	---	---	---	0	0	0.048971	0	0
ATP1A2	477	broad.mit.edu	37	1	160106465	160106465	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr1:160106465G>A	uc001fvc.2	+	19	2801	c.2669G>A	c.(2668-2670)CGG>CAG	p.R890Q	ATP1A2_uc001fvb.2_Missense_Mutation_p.R890Q|ATP1A2_uc001fvd.2_Missense_Mutation_p.R609Q	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	890	Extracellular (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TGGGATGACCGGACCATGAAT	0.552000													3	61	---	---	---	---	0	0	0.004672	0	0
PLXNC1	10154	broad.mit.edu	37	12	94641772	94641772	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr12:94641772G>A	uc001tdc.2	+	13	2731	c.2482G>A	c.(2482-2484)GTA>ATA	p.V828I		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	828	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						GAAGCTGAGAGTACAAGACAC	0.507000													3	38	---	---	---	---	0	0	0.009096	0	0
OAS3	4940	broad.mit.edu	37	12	113403801	113403801	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr12:113403801G>A	uc001tug.2	+	12	2743	c.2656G>A	c.(2656-2658)GAC>AAC	p.D886N		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	886	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						CCAGAGTGTGGACTTTGATGT	0.502000													15	18	---	---	---	---	0	0	0.033300	0	0
Unknown	0	broad.mit.edu	37	15	84945431	84945431	+	RNA	SNP	G	T	T			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr15:84945431G>T	uc002bke.1	-	1		c.1787C>A								Homo sapiens cDNA FLJ34196 fis, clone FCBBF3019437.																		CCAAGAACTAGCAGTGGCCCT	0.512000													3	49	---	---	---	---	0.00024832	0.000274459	0.009096	1	0
WASH3P	374666	broad.mit.edu	37	15	102515344	102515344	+	Missense_Mutation	SNP	A	C	C	rs141089280	by1000genomes	TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr15:102515344A>C	uc002cdi.2	+	9	1988	c.568A>C	c.(568-570)AAG>CAG	p.K190Q	WASH3P_uc002cdl.2_Missense_Mutation_p.K190Q|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.K190Q|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						GCTGGAGAAGAAGCAGCAGAA	0.662000													2	3	---	---	---	---	0	0	0.004672	0	0
RANBP10	57610	broad.mit.edu	37	16	67762359	67762359	+	Missense_Mutation	SNP	T	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr16:67762359T>A	uc002eud.2	-	11	1524	c.1408A>T	c.(1408-1410)ATG>TTG	p.M470L	RANBP10_uc010ceo.2_Missense_Mutation_p.M241L|RANBP10_uc010vju.1_Missense_Mutation_p.M444L|RANBP10_uc010vjv.1_Missense_Mutation_p.M383L|RANBP10_uc010vjw.1_Missense_Mutation_p.M161L	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	470										ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		CGTGTGGACATGCTTCCTAGC	0.582000													18	40	---	---	---	---	0	0	0.076483	0	0
PCSK4	54760	broad.mit.edu	37	19	1490315	1490315	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr19:1490315G>A	uc002ltb.1	-	1	93	c.31C>T	c.(31-33)CGC>TGC	p.R11C	PCSK4_uc002lta.2_5'UTR|REEP6_uc010xgp.1_5'Flank|REEP6_uc002ltc.2_5'Flank	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	11					proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGACCAGGCGCAGCCACAGC	0.751000													2	1	---	---	---	---	0	0	0.004672	0	0
ZNF878	729747	broad.mit.edu	37	19	12155673	12155673	+	Missense_Mutation	SNP	A	C	C			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr19:12155673A>C	uc002mta.1	-	5	684	c.684T>G	c.(682-684)AGT>AGG	p.S228R		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	181	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AACTGGGAAAACTGAATGCTT	0.403000													4	97	---	---	---	---	0	0	0.009096	0	0
LPHN1	22859	broad.mit.edu	37	19	14267930	14267930	+	Silent	SNP	G	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr19:14267930G>A	uc010xnn.1	-	16	3084	c.2788C>T	c.(2788-2790)CTG>TTG	p.L930L	LPHN1_uc010xno.1_Silent_p.L925L|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	930	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						AAATAGTGCAGCAGGCCGGCG	0.642000													3	30	---	---	---	---	0	0	0.004672	0	0
ZNF225	7768	broad.mit.edu	37	19	44635831	44635831	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr19:44635831A>G	uc002oyj.1	+	5	1307	c.1064A>G	c.(1063-1065)TAT>TGT	p.Y355C	ZNF225_uc010eje.1_Missense_Mutation_p.Y272C|ZNF225_uc010ejf.1_Missense_Mutation_p.Y355C	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	355	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				CGCTTCATTTATAGGCAAGAT	0.423000													17	29	---	---	---	---	0	0	0.038395	0	0
KCNH7	90134	broad.mit.edu	37	2	163302758	163302758	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr2:163302758G>A	uc002uch.1	-	7	1536	c.1324C>T	c.(1324-1326)CGA>TGA	p.R442*	KCNH7_uc002uci.2_Nonsense_Mutation_p.R435*	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	442	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CCACATTCTCGTCTTTTCTGT	0.383000													15	16	---	---	---	---	0	0	0.028581	0	0
CLTCL1	8218	broad.mit.edu	37	22	19183842	19183842	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr22:19183842G>A	uc002zpb.2	-	27	4201	c.4126C>T	c.(4126-4128)CTC>TTC	p.L1376F	CLTCL1_uc011agv.1_Missense_Mutation_p.L1376F|CLTCL1_uc011agw.1_Missense_Mutation_p.L1355F|CLTCL1_uc011agt.1_Missense_Mutation_p.L167F|CLTCL1_uc011agu.1_Missense_Mutation_p.L167F|CLTCL1_uc010grm.1_Missense_Mutation_p.L136F|CLTCL1_uc002zpe.2_3'UTR|CLTCL1_uc002zpd.1_Missense_Mutation_p.L283F	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1376	Involved in binding clathrin light chain (By similarity).|Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					ATCATGGTGAGCACAGCATTG	0.567000			T	?	ALCL								3	46	---	---	---	---	0	0	0.004672	0	0
LOC220729	220729	broad.mit.edu	37	3	197348674	197348674	+	RNA	SNP	A	G	G	rs144273946	by1000genomes	TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr3:197348674A>G	uc011bug.1	-	4		c.417T>C			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						GGCTCTGTCCACCAAATGCAC	0.478000													4	82	---	---	---	---	0	0	0.009096	0	0
LETM1	3954	broad.mit.edu	37	4	1843468	1843468	+	Missense_Mutation	SNP	C	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr4:1843468C>A	uc003gdv.2	-	3	497	c.200G>T	c.(199-201)GGC>GTC	p.G67V	LETM1_uc010icc.2_5'Flank|LETM1_uc011bvg.1_Missense_Mutation_p.G67V	NM_012318	NP_036450	O95202	LETM1_HUMAN	leucine zipper-EF-hand containing transmembrane	67					cristae formation	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			central_nervous_system(1)	1			all cancers(2;0.00756)|OV - Ovarian serous cystadenocarcinoma(23;0.00989)|Epithelial(3;0.0141)			GAGGTGATCGCCTCTGGAGGA	0.552000													7	26	---	---	---	---	5.18039e-06	6.04379e-06	0.038147	1	0
ENPEP	2028	broad.mit.edu	37	4	111398204	111398204	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr4:111398204G>A	uc003iab.3	+	1	976	c.634G>A	c.(634-636)GGA>AGA	p.G212R		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	212	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CACGGAGAACGGACAAGTCAA	0.453000													7	32	---	---	---	---	0	0	0.058154	0	0
Unknown	0	broad.mit.edu	37	1	16421298	16421300	+	IGR	DEL	CAC	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr1:16421298_16421300delCAC								FAM131C (21171 upstream) : EPHA2 (29532 downstream)																							tcaccaccatcaccaccaccacc	0.044													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	30196204	30196205	+	IGR	INS	-	CAC	CAC	rs147183868	by1000genomes	TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr1:30196204_30196205insCAC								PTPRU (542889 upstream) : MATN1 (987921 downstream)																							accaccatcatcaccaccacca	0.000													6	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484720	121484721	+	IGR	INS	-	G	G	rs2200142		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr1:121484720_121484721insG								LOC647121 (171034 upstream) : None (None downstream)																							tctttggaaacggttttttctc	0.000													9	350	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484849	121484849	+	IGR	DEL	C	-	-	rs28810454		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr1:121484849delC								LOC647121 (171163 upstream) : None (None downstream)																							gtgcaatttgcaagtgtagat	0.000													8	896	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384710	42384710	+	IGR	DEL	T	-	-	rs151222414		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:42384710delT								None (None upstream) : LOC441666 (442605 downstream)																							ttgaacggaatcgaatggaat	0.000													14	574	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384716	42384716	+	IGR	DEL	G	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:42384716delG								None (None upstream) : LOC441666 (442599 downstream)																							ggaatcgaatggaatcatcat	0.000													16	605	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400410	42400410	+	IGR	DEL	C	-	-	rs74186261		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:42400410delC								None (None upstream) : LOC441666 (426905 downstream)																							aacgggatttcttcacataat	0.000													36	189	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42529391	42529391	+	IGR	DEL	G	-	-	rs71210893		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:42529391delG								None (None upstream) : LOC441666 (297924 downstream)																							attatatgaagaaatcccgtt	0.000													8	161	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42597159	42597159	+	IGR	DEL	T	-	-	rs149908177		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:42597159delT								None (None upstream) : LOC441666 (230156 downstream)																							ttgaacggaatcgaatggaat	0.035													24	1198	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42597165	42597165	+	IGR	DEL	G	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:42597165delG								None (None upstream) : LOC441666 (230150 downstream)																							ggaatcgaatggaatcatcat	0.020													10	1137	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42599948	42599949	+	IGR	INS	-	TCA	TCA	rs12146204		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:42599948_42599949insTCA								None (None upstream) : LOC441666 (227366 downstream)																							tggaatcatctaatggaatgga	0.000													13	764	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600053	42600053	+	IGR	DEL	T	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:42600053delT								None (None upstream) : LOC441666 (227262 downstream)																							ttgaacggaattgaatggaat	0.000													7	325	---	---	---	---					
FBXW4	6468	broad.mit.edu	37	10	103454358	103454360	+	In_Frame_Del	DEL	CCT	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:103454358_103454360delCCT	uc001kto.2	-	1	384_386	c.38_40delAGG	c.(37-42)GAGGCG>GCG	p.E13del		NM_022039	NP_071322	P57775	FBXW4_HUMAN	F-box and WD repeat domain containing 4	13					ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	ubiquitin ligase complex				skin(1)	1		Colorectal(252;0.123)		Epithelial(162;4.35e-08)|all cancers(201;1.92e-06)		TCCCGAGCCGcctcctcctcctc	0.675													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014571	125014571	+	IGR	DEL	T	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:125014571delT								BUB3 (89685 upstream) : GPR26 (411300 downstream)																							atcaccatcatcacaccacca	0.000													7	26	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014722	125014722	+	IGR	DEL	T	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr10:125014722delT								BUB3 (89836 upstream) : GPR26 (411149 downstream)																							atcaccatcatcacaccacca	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	115102548	115102548	+	IGR	DEL	G	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr12:115102548delG								TBX5 (256301 upstream) : TBX3 (5511 downstream)																							CGGGGTGGGCGGGGGGGAAGC	0.632													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	114921728	114921728	+	IGR	DEL	G	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr13:114921728delG								RASA3 (23633 upstream) : CDC16 (78634 downstream)																							ggggaggggtggggaagggtg	0.000													2	4	---	---	---	---					
FOXG1	2290	broad.mit.edu	37	14	29236089	29236091	+	5'Flank	DEL	GCT	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr14:29236089_29236091delGCT	uc001wqe.2	+							NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1						axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		CCCCCTTTGGgctgctgctgctg	0.350													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	34781074	34781080	+	IGR	DEL	AAAAAAA	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr15:34781074_34781080delAAAAAAA								GOLGA8A (99073 upstream) : GOLGA8B (36405 downstream)																							ACCTAGCATTaaaaaaaaaaaaaaaaa	0.372													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	77868660	77868662	+	IGR	DEL	GGA	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr15:77868660_77868662delGGA								HMG20A (90717 upstream) : LINGO1 (36707 downstream)																							GCCTCATGCTggaggaggaggag	0.399													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	6097309	6097311	+	IGR	DEL	TGA	-	-	rs151092731	by1000genomes	TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr17:6097309_6097311delTGA								WSCD1 (69564 upstream) : AIPL1 (229749 downstream)																							gaggtggtggtgatggtgatgga	0.000													6	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738491	27738491	+	IGR	DEL	T	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr19:27738491delT								None (None upstream) : LOC148189 (542911 downstream)																							tggaaacgggtttttttcatg	0.000													17	266	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	130948314	130948315	+	IGR	INS	-	T	T	rs71396588		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr2:130948314_130948315insT								FAM128B (15 upstream) : TUBA3E (1006 downstream)																							GTTGTCTACCGttttttttttt	0.406													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	242820166	242820167	+	IGR	INS	-	CG	CG			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr2:242820166_242820167insCG								C2orf85 (4684 upstream) : LOC728323 (210677 downstream)																							cctctcccggcccccccacccc	0.054													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9825852	9825853	+	IGR	INS	-	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr21:9825852_9825853insA								None (None upstream) : None (None downstream)																							gcggcggtggtggggggagccg	0.272													8	91	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	24870607	24870607	+	IGR	DEL	A	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr3:24870607delA								THRB (334154 upstream) : RARB (345216 downstream)																							cacagcggtgaaggcggcagg	0.358													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49156524	49156524	+	IGR	DEL	A	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr4:49156524delA								CWH43 (92431 upstream) : None (None downstream)																							attcgggttgattccattcca	0.000													7	217	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	3276307	3276308	+	IGR	INS	-	A	A			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr5:3276307_3276308insA								C5orf38 (520795 upstream) : IRX1 (319860 downstream)																							gaaggagggggggatgaaggag	0.015													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	167920547	167920548	+	IGR	INS	-	C	C			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr6:167920547_167920548insC								TCP10 (122549 upstream) : C6orf123 (264673 downstream)																							tcccctcccttccctgtcccct	0.000													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	1236297	1236297	+	IGR	DEL	A	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr7:1236297delA								ZFAND2A (36442 upstream) : UNCX (36357 downstream)																							TGTGATGAAgaggggggggtg	0.050													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61969534	61969534	+	IGR	DEL	A	-	-	rs56839084		TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chr7:61969534delA								None (None upstream) : LOC643955 (782138 downstream)																							taataaccagacagaatcatt	0.000													9	1191	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13842715	13842715	+	IGR	DEL	G	-	-			TCGA-FY-A3NP-01A-11D-A21A-08	TCGA-FY-A3NP-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d117c65a-9493-4628-9eb0-1450fed1fb4f	7e10e1f6-d078-4e0b-aa0a-4be138ac0a3a	g.chrY:13842715delG								None (None upstream) : TTTY15 (931583 downstream)																							atcaacccgagtggaatggaa	0.000													12	1279	---	---	---	---					
