| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2013_01_16__00_00_30.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationids | protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DataMergerPipeline/BRCA/2327724/GDAC_CreateMergeDataFilesSDRF1.datapathsfile.input.tsv |
| GDAC_DataMerger2 output | BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt |
| GDAC_DataMerger2 dataPaths | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DataMergerPipeline/BRCA/2327724/GDAC_DataMerger2.dataPaths.input.tsv |
| Execution Times: | |
| Submitted: | 13:17:13 17-01-13 |
| Completed: | |
| Elapsed: | 00 hrs 26 mins 52 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 289291] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:12
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2013_01_16__00_00_30.samplestamp.txt |
| annotationids | protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data |
| sdrfName | |
| doNotCreateManifest | |
| datapathsfile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DataMergerPipeline/BRCA/2327724/GDAC_CreateMergeDataFilesSDRF1.datapathsfile.input.tsv |
| Output Files: | |
| BRCA.merger.sdrf.txt | |
| dcc_archive.properties | |
| .lsf.out | |
| dcc_archive_manifest.tsv | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 13:18:28 17-01-13 |
| Completed: | 13:27:35 17-01-13 |
| Elapsed: | 00 hrs 09 mins 06 secs |
step 2. GDAC_DataMerger [id: 289292] Merge a list of files into a single file. Validate that all the files have the same columns and row names.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00481:4
| output | BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt |
| dataPaths | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DataMergerPipeline/BRCA/2327724/GDAC_DataMerger2.dataPaths.input.tsv |
| Output Files: | |
| BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt | |
| .lsf.out | |
| Execution Times: | |
| Submitted: | 13:18:28 17-01-13 |
| Completed: | 13:44:04 17-01-13 |
| Elapsed: | 00 hrs 25 mins 35 secs |