| GDAC_clinicalDataPicker1 stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/COAD/2327813/0.GDAC_clinicalDataMerger.Finished/COAD.clin.merged.txt |
| GDAC_clinicalDataPicker1 selectFile | file:/xchip/cga/reference/tcga/clinical/2012_11_14/stage3_params_clin_coad.tsv |
| GDAC_clinicalDataPicker1 nodeColumn | 1 |
| GDAC_clinicalDataPicker1 outPrefix | COAD |
| Execution Times: | |
| Submitted: | 15:17:21 17-01-13 |
| Completed: | |
| Elapsed: | 03 hrs 11 mins 12 secs |
step 1. GDAC_clinicalDataPicker [id: 294772] Picks out the clinical paramters of interest
urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
| stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/COAD/2327813/0.GDAC_clinicalDataMerger.Finished/COAD.clin.merged.txt |
| selectFile | file:/xchip/cga/reference/tcga/clinical/2012_11_14/stage3_params_clin_coad.tsv |
| nodeColumn | 1 |
| outPrefix | COAD |
| Output Files: | |
| COAD.clin.merged.picked.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 15:17:21 17-01-13 |
| Completed: | 16:45:27 17-01-13 |
| Elapsed: | 01 hrs 28 mins 06 secs |
step 2. GDAC_clinicalDataPickerReport [id: 294773] Clinical data report
urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
| picked | COAD.clin.merged.picked.txt |
| Execution Times: | |
| Submitted: | 15:17:21 17-01-13 |
| Completed: | 18:28:23 17-01-13 |
| Elapsed: | 03 hrs 11 mins 02 secs |