# Created: Thu Jan 17 16:45:41 EST 2013 by cgaadm_deadline
# Job: 294800    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_RPPA_preprocess urn:lsid:broadinstitute.org:cancer.genome.analysis:10070:10
# Parameters: 
#    Rppafile = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DataMergerPipeline/COAD/2327790/2.GDAC_DataMerger.Finished/COAD.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
#    annotationfile = file:/xchip/gdac_data/normalized/aux_annotations/antibody_gene_annotations/COAD.2012_09_19__00_00_19.antibody_annotation.txt
#    outputname = COAD
#    colgene = 1
#    colantibody = 3
