Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ANKRD30A	91074	genome.wustl.edu	36	10	37495588	37495588	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	37495588	37495588	C	T	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	+1	validated	missense	c.1946	p.A649V	0.010	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE	-	no_errors
LOC728135	728135	genome.wustl.edu	36	3	75512195	75512196	+	Frame_Shift_Ins	INS	-	-	AC			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	75512195	75512196	-	AC	INS	LOC728135	XM_001714317	human	genbank	54_36p	-1	model	frame_shift_ins	c.300_299	p.C101fs	0.000:0.000	NULL	PatternScan_KAZAL	-	no_errors
TCHHL1	126637	genome.wustl.edu	36	1	150324146	150324146	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	150324146	150324146	T	C	SNP	TCHHL1	NM_001008536	human	genbank	54_36p	-1	provisional	missense	c.2636	p.Q879R	0.075	NULL	PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100	-	no_errors
RAPGEF5	9771	genome.wustl.edu	36	7	22321594	22321594	+	Silent	SNP	T	T	C			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	22321594	22321594	T	C	SNP	RAPGEF5	ENST00000405243	human	ensembl	54_36p	-1	known	silent	c.309	p.A103	1.000	"superfamily_""Winged helix"" DNA-binding domain"	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP"	-	no_errors
KRT18P40	390904	genome.wustl.edu	36	19	20937274	20937275	+	RNA	INS	-	-	G			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	20937274	20937275	-	G	INS	KRT18P40	XR_017288	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.997:1.000	-	-	-	pseudogene
CYP21A2	1589	genome.wustl.edu	36	6	32114865	32114865	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32114865	32114865	G	A	SNP	CYP21A2	NM_000500	human	genbank	54_36p	+1	reviewed	missense	c.308	p.R103K	0.003	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
PTPN11	5781	genome.wustl.edu	36	12	111372548	111372548	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	111372548	111372548	G	A	SNP	PTPN11	NM_002834	human	genbank	54_36p	+1	reviewed	missense	c.181	p.D61N	1.000	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
ESYT1	23344	genome.wustl.edu	36	12	54812846	54812847	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54812846	54812847	-	G	INS	FAM62A	NM_015292	human	genbank	54_36p	+1	provisional	frame_shift_ins	c.1238_1239	p.R415fs	1.000:1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C6orf10	10665	genome.wustl.edu	36	6	32425901	32425904	+	Frame_Shift_Del	DEL	TTTC	TTTC	-			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	TTTC	TTTC			TTTC	TTTC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32425901	32425904	TTTC	-	DEL	C6orf10	ENST00000375002	human	ensembl	54_36p	-1	known	frame_shift_del	c.221_218	p.R73fs	0.017:0.017:0.014:0.010	NULL	NULL	-	no_errors
LOC728211	728211	genome.wustl.edu	36	18	12066175	12066175	+	RNA	SNP	A	A	G			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	12066175	12066175	A	G	SNP	LOC728211	XR_015403	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.973	-	-	-	pseudogene
KRT74	121391	genome.wustl.edu	36	12	51250815	51250815	+	Silent	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51250815	51250815	G	A	SNP	KRT74	NM_175053	human	genbank	54_36p	-1	validated	silent	c.913	p.L305	0.958	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821357	208821357	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821357	208821357	C	T	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.395	p.R132H	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
EP400	57634	genome.wustl.edu	36	12	131032838	131032838	+	Silent	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	131032838	131032838	G	A	SNP	EP400	NM_015409	human	genbank	54_36p	+1	validated	silent	c.1788	p.Q596	0.985	NULL	HMMPfam_HSA,HMMSmart_HSA,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Homeodomain_like	-	no_errors
GRM7	2917	genome.wustl.edu	36	3	7478316	7478316	+	Silent	SNP	T	T	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	7478316	7478316	T	A	SNP	GRM7	NM_181874	human	genbank	54_36p	+1	reviewed	silent	c.1422	p.P474	0.995	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
C20orf24	55969	genome.wustl.edu	36	20	34673853	34673853	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	34673853	34673853	C	T	SNP	C20orf24	NM_199483	human	genbank	54_36p	+1	validated	missense	c.245	p.P82L	0.994	HMMPfam_Rab5ip	HMMPfam_Rab5ip	-	no_errors
KIAA2022	340533	genome.wustl.edu	36	X	73880996	73880996	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	73880996	73880996	G	T	SNP	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	missense	c.121	p.L41I	1.000	NULL	NULL	-	no_errors
TBX15	6913	genome.wustl.edu	36	1	119270684	119270684	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	119270684	119270684	T	A	SNP	TBX15	NM_152380	human	genbank	54_36p	-1	validated	missense	c.175	p.I59F	1.000	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
LOC100134184	100134184	genome.wustl.edu	36	1	9992	9992	+	Missense_Mutation	SNP	C	C	T	rs7354882	byCluster	TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	9992	9992	C	T	SNP	LOC100134184	XM_001717138	human	genbank	54_36p	+1	model	missense	c.1880	p.A627V	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
DNMT3A	1788	genome.wustl.edu	36	2	25310747	25310747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310747	25310747	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2644	p.R882C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
