Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MT-ND1	0	genome.wustl.edu	36	MT	3362	3362	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	MT	3362	3362	T	C	SNP	MT-ND1	ENST00000361390	human	ensembl	54_36p	+1	known	missense	c.55	p.F19L	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_errors
ENSG00000211459	0	genome.wustl.edu	36	MT	744	744	+	RNA	SNP	T	T	C			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	MT	744	744	T	C	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
STEAP2	261729	genome.wustl.edu	36	7	89694251	89694251	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	89694251	89694251	C	T	SNP	STEAP2	NM_001040665	human	genbank	54_36p	+1	reviewed	nonsense	c.523	p.R175*	0.992	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored,HMMPfam_Ferric_reduct	-	no_errors
MAGI2	9863	genome.wustl.edu	36	7	78920299	78920299	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	78920299	78920299	G	A	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	missense	c.274	p.P92S	1.000	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TCF7L1	83439	genome.wustl.edu	36	2	85389804	85389804	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	85389804	85389804	C	G	SNP	TCF7L1	NM_031283	human	genbank	54_36p	+1	provisional	missense	c.1475	p.P492R	0.996	NULL	HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09					-	-	Verified	Valid	Somatic		Capture				Illumina HiSeq	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina HiSeq	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1	NULL	HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT	-	NA
UBD	10537	genome.wustl.edu	36	6	29631669	29631669	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	29631669	29631669	T	A	SNP	UBD	NM_006398	human	genbank	54_36p	-1	validated	missense	c.465	p.L155F	0.004	HMMSmart_SM00213,HMMPfam_ubiquitin,superfamily_Ubiquitin-like	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin	-	no_errors
NIN	51199	genome.wustl.edu	36	14	50293976	50293976	+	Silent	SNP	T	T	C			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	50293976	50293976	T	C	SNP	NIN	NM_020921	human	genbank	54_36p	-1	reviewed	silent	c.3522	p.E1174	0.902	NULL	superfamily_EF-hand,HMMPfam_efhand	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26035448	26035448	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	26035448	26035448	C	T	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.13567	p.A4523T	0.991	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,HMMSmart_SM00706,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Galactose-binding domain-like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
NAPSA	9476	genome.wustl.edu	36	19	55554088	55554088	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2809-03D-01W-0755-09	TCGA-AB-2809-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	55554088	55554088	C	T	SNP	NAPSA	NM_004851	human	genbank	54_36p	-1	reviewed	missense	c.1027	p.V343I	1.000	superfamily_Pept_Aspartic,HMMPfam_Asp	superfamily_Pept_Aspartic,HMMPfam_Asp,PatternScan_ASP_PROTEASE	-	no_errors
