Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MN1	4330	genome.wustl.edu	36	22	26476983	26476984	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	26476983	26476984	-	TC	INS	MN1	NM_002430	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.3883_3882	p.R1294fs	0.998:0.998	NULL	NULL	-	no_errors
ENSG00000223073	0	genome.wustl.edu	36	MT	500	500	+	RNA	SNP	C	C	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	500	500	C	A	SNP	ENSG00000223073	ENST00000411141	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
LRIF1	55791	genome.wustl.edu	36	1	111294073	111294073	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	111294073	111294073	C	G	SNP	C1orf103	NM_018372	human	genbank	54_36p	-1	validated	missense	c.1792	p.D598H	0.000	NULL	NULL	-	no_errors
MFN1	55669	genome.wustl.edu	36	3	180562900	180562900	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	180562900	180562900	G	A	SNP	MFN1	NM_033540	human	genbank	54_36p	+1	reviewed	missense	c.472	p.V158I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin	-	no_errors
MT-CO2	0	genome.wustl.edu	36	MT	8103	8103	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	8103	8103	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	missense	c.517	p.D173N	NULL	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	no_errors
SLC18A2	6571	genome.wustl.edu	36	10	118993771	118993771	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	118993771	118993771	G	A	SNP	SLC18A2	NM_003054	human	genbank	54_36p	+1	provisional	missense	c.421	p.V141I	0.971	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
CEP170P1	645455	genome.wustl.edu	36	4	44736	44736	+	RNA	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	44736	44736	G	A	SNP	CEP170L	XR_042173	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene
KIAA1683	80726	genome.wustl.edu	36	19	18229587	18229587	+	Silent	SNP	G	G	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	18229587	18229587	G	T	SNP	KIAA1683	NM_025249	human	genbank	54_36p	-1	validated	silent	c.2946	p.A982	0.384	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18649584	18649584	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	18649584	18649584	G	A	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.539	p.A180V	1.000	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
GPR125	166647	genome.wustl.edu	36	4	21998925	21998925	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	21998925	21998925	G	A	SNP	GPR125	NM_145290	human	genbank	54_36p	-1	validated	missense	c.3467	p.A1156V	0.998	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
GALNTL6	442117	genome.wustl.edu	36	4	172972307	172972307	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	172972307	172972307	A	G	SNP	GALNTL6	NM_001034845	human	genbank	54_36p	+1	validated	missense	c.1	p.M1V	1.000	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	-	no_errors
IL1RL2	8808	genome.wustl.edu	36	2	102222123	102222123	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	102222123	102222123	C	T	SNP	IL1RL2	NM_003854	human	genbank	54_36p	+1	reviewed	missense	c.1718	p.T573M	0.000	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors
DAB2	1601	genome.wustl.edu	36	5	39418786	39418787	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	AC	AC			AC	AC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	39418786	39418787	AC	-	DEL	DAB2	NM_001343	human	genbank	54_36p	-1	validated	frame_shift_del	c.1032_1031	p.G344fs	0.972:1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_PFKB_KINASES_1	-	no_errors
PLK5	126520	genome.wustl.edu	36	19	1486194	1486196	+	In_Frame_Del	DEL	CCC	CCC	-			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	CCC	CCC			CCC	CCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1486194	1486196	CCC	-	DEL	PLK5P	ENST00000334770	human	ensembl	54_36p	+1	known	in_frame_del	c.953_955	p.P319in_frame_del	0.002:0.003:0.000	superfamily_Polo-box domain	HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),superfamily_Polo-box domain	-	no_start_codon
TTC26	79989	genome.wustl.edu	36	7	138503645	138503645	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	138503645	138503645	G	T	SNP	TTC26	NM_024926	human	genbank	54_36p	+1	validated	nonsense	c.967	p.G323*	1.000	superfamily_SSF48452	superfamily_SSF48452	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	3188242	3188242	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	3188242	3188242	A	T	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.3616	p.F1206I	0.980	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TGM5	9333	genome.wustl.edu	36	15	41313067	41313067	+	Silent	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	41313067	41313067	G	A	SNP	TGM5	NM_201631	human	genbank	54_36p	-1	validated	silent	c.1986	p.L662	0.927	HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains	superfamily_E set domains,HMMPfam_Transglut_N,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C	-	no_errors
IPO7	10527	genome.wustl.edu	36	11	9411726	9411726	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	9411726	9411726	G	A	SNP	IPO7	NM_006391	human	genbank	54_36p	+1	reviewed	missense	c.1915	p.V639I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N	-	no_errors
LOC100131656	100131656	genome.wustl.edu	36	X	40635696	40635696	+	RNA	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	40635696	40635696	G	A	SNP	LOC100131656	XR_037406	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
KCNK9	51305	genome.wustl.edu	36	8	140700045	140700045	+	Silent	SNP	G	G	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	140700045	140700045	G	T	SNP	KCNK9	NM_016601	human	genbank	54_36p	-1	reviewed	silent	c.763	p.R255	0.977	superfamily_SSF81324	superfamily_SSF81324,HMMPfam_Ion_trans_2	-	no_errors
SUDS3	64426	genome.wustl.edu	36	12	117325666	117325666	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	117325666	117325666	C	A	SNP	SUDS3	NM_022491	human	genbank	54_36p	+1	validated	missense	c.764	p.A255D	1.000	NULL	HMMPfam_Sds3	-	no_errors
SUZ12	23512	genome.wustl.edu	36	17	27291451	27291451	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	27291451	27291451	G	A	SNP	SUZ12	NM_015355	human	genbank	54_36p	+1	reviewed	missense	c.308	p.R103Q	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_VEFS-Box	-	no_errors
