Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SYT17	51760	genome.wustl.edu	36	16	19143586	19143586	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	19143586	19143586	G	C	SNP	SYT17	NM_016524	human	genbank	54_36p	+1	validated	missense	c.1153	p.D385H	0.989	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
LRRC43	254050	genome.wustl.edu	36	12	121243474	121243474	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	121243474	121243474	G	A	SNP	LRRC43	NM_001098519	human	genbank	54_36p	+1	validated	missense	c.1319	p.R440H	0.000	NULL	superfamily_Outer arm dynein light chain 1	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10301589	10301589	+	Silent	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	10301589	10301589	G	A	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	silent	c.1770	p.D590	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25320712	25320712	+	Splice_Site	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	25320712	25320712	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	splice_site	c.1668-1	e14-1	1.000	-	-	-	no_errors
MED12	9968	genome.wustl.edu	36	X	70272893	70272893	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	70272893	70272893	G	A	SNP	MED12	NM_005120	human	genbank	54_36p	+1	validated	nonsense	c.5063	p.W1688*	1.000	NULL	HMMPfam_Med12	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
FLJ22167	0	genome.wustl.edu	36	16	74134048	74134048	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	74134048	74134048	T	C	SNP	FLJ22167	NM_001077416	human	genbank	54_36p	-1	validated	missense	c.704	p.Y235C	0.061	HMMPfam_NAcGluc_Transf	HMMPfam_NAcGluc_Transf	-	no_errors
NCAPG	64151	genome.wustl.edu	36	4	17426051	17426051	+	Silent	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	17426051	17426051	C	T	SNP	NCAPG	NM_022346	human	genbank	54_36p	+1	validated	silent	c.747	p.L249	0.982	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
LOC642669	642669	genome.wustl.edu	36	14	18828312	18828312	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	18828312	18828312	C	T	SNP	LOC642669	XM_926123	human	genbank	54_36p	+1	model	missense	c.137	p.A46V	0.959	NULL	NULL	-	no_errors
WRN	7486	genome.wustl.edu	36	8	31124475	31124475	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	8	31124475	31124475	G	A	SNP	WRN	NM_000553	human	genbank	54_36p	+1	reviewed	missense	c.3513	p.M1171I	0.995	HMMSmart_SM00341,HMMPfam_HRDC	HMMSmart_SM00474,HMMPfam_3_5_exonuc,superfamily_Ribonuclease H-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_RQC,HMMSmart_SM00341,HMMPfam_HRDC	-	no_errors
GCM2	9247	genome.wustl.edu	36	6	10985374	10985374	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	10985374	10985374	G	A	SNP	GCM2	NM_004752	human	genbank	54_36p	-1	reviewed	missense	c.328	p.R110W	0.850	superfamily_GCM_motif,HMMPfam_GCM	superfamily_GCM_motif,HMMPfam_GCM	-	no_errors
uc010dwx.1	0	genome.wustl.edu	36	19	10019021	10019021	+	Silent	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	10019021	10019021	C	T	SNP	uc010dwx.1	ENST00000333905	human	ensembl	54_36p	+1	known	silent	c.184	p.L62	0.997	HMMPfam_A2M	HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	-	no_errors
UTS2	10911	genome.wustl.edu	36	1	7836067	7836067	+	Silent	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	7836067	7836067	G	A	SNP	UTS2	NM_021995	human	genbank	54_36p	-1	reviewed	silent	c.12	p.N4	0.000	NULL	HMMPfam_Urotensin_II,PatternScan_UROTENSIN_II	-	no_errors
ITPR3	3710	genome.wustl.edu	36	6	33765099	33765099	+	Silent	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	33765099	33765099	G	A	SNP	ITPR3	NM_002224	human	genbank	54_36p	+1	validated	silent	c.6801	p.A2267	0.185	NULL	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR,HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_MIR,superfamily_SSF100909	-	no_errors
AGXT2	64902	genome.wustl.edu	36	5	35072874	35072874	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	35072874	35072874	G	T	SNP	AGXT2	NM_031900	human	genbank	54_36p	-1	reviewed	missense	c.416	p.T139N	0.001	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_3	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3	-	no_errors
LOC644988	644988	genome.wustl.edu	36	17	20685134	20685138	+	RNA	DEL	CGCAC	CGCAC	-			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	CGCAC	CGCAC			CGCAC	CGCAC	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	20685134	20685138	CGCAC	-	DEL	LOC644988	XR_017586	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.951:0.954:0.970:0.971:0.977	-	-	-	pseudogene
LEO1	123169	genome.wustl.edu	36	15	50017675	50017675	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	50017675	50017675	G	C	SNP	LEO1	NM_138792	human	genbank	54_36p	-1	provisional	missense	c.1971	p.I657M	1.000	NULL	HMMPfam_Leo1	-	no_errors
OR9K1P	121360	genome.wustl.edu	36	12	53795956	53795956	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	53795956	53795956	C	T	SNP	OR9K1P	ENST00000326513	human	ensembl	54_36p	+1	known	missense	c.373	p.R125C	1.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
WASH1	100287171	genome.wustl.edu	36	9	4810	4810	+	Silent	SNP	C	C	G			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	4810	4810	C	G	SNP	WASH1	NM_182905	human	genbank	54_36p	-1	validated	silent	c.792	p.S264	0.949	NULL	NULL	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106375492	106375492	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	106375492	106375492	C	-	DEL	TET2	NM_017628	human	genbank	54_36p	+1	validated	frame_shift_del	c.944	p.Q317fs	0.998	NULL	NULL	-	no_errors
WSCD1	23302	genome.wustl.edu	36	17	5964535	5964535	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	5964535	5964535	G	A	SNP	WSCD1	NM_015253	human	genbank	54_36p	+1	validated	missense	c.1558	p.V520M	1.000	superfamily_SSF52540	HMMSmart_WSC,HMMPfam_WSC,superfamily_SSF52540	-	no_errors
R3HDM1	23518	genome.wustl.edu	36	2	136125804	136125804	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	136125804	136125804	G	A	SNP	R3HDM1	NM_015361	human	genbank	54_36p	+1	provisional	missense	c.1655	p.S552N	1.000	NULL	HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H	-	no_errors
TMEM200A	114801	genome.wustl.edu	36	6	130803775	130803775	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	130803775	130803775	C	T	SNP	TMEM200A	NM_052913	human	genbank	54_36p	+1	provisional	missense	c.515	p.T172M	0.961	NULL	HMMPfam_DUF2371	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87369739	87369739	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	87369739	87369739	T	A	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	missense	c.2225	p.D742V	1.000	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
PCDHB6	56130	genome.wustl.edu	36	5	140510496	140510496	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	140510496	140510496	T	A	SNP	PCDHB6	NM_018939	human	genbank	54_36p	+1	reviewed	missense	c.474	p.D158E	0.982	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
EDIL3	10085	genome.wustl.edu	36	5	83438262	83438262	+	Silent	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	83438262	83438262	C	T	SNP	EDIL3	NM_005711	human	genbank	54_36p	-1	reviewed	silent	c.612	p.A204	1.000	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53452803	53452803	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	53452803	53452803	G	C	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.1460	p.A487G	1.000	HMMPfam_SMC_N,superfamily_SMC_hinge,superfamily_SSF52540	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	-	no_errors
