Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ITPR1	3708	genome.wustl.edu	36	3	4800546	4800546	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	4800546	4800546	G	A	SNP	ITPR1	NM_001099952	human	genbank	54_36p	+1	validated	missense	c.6413	p.G2138D	0.977	NULL	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors
ADAM8	101	genome.wustl.edu	36	10	134934471	134934471	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	134934471	134934471	C	T	SNP	ADAM8	NM_001109	human	genbank	54_36p	-1	reviewed	missense	c.1468	p.A490T	0.779	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
CTAGE6P	340307	genome.wustl.edu	36	7	143084822	143084822	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	143084822	143084822	G	A	SNP	CTAGE6	NM_178561	human	genbank	54_36p	-1	validated	missense	c.863	p.T288M	0.294	NULL	NULL	-	no_errors
CNOT6	57472	genome.wustl.edu	36	5	179927586	179927586	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	179927586	179927586	G	T	SNP	CNOT6	NM_015455	human	genbank	54_36p	+1	reviewed	missense	c.1004	p.R335L	1.000	HMMPfam_Exo_endo_phos,superfamily_DNase I-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMPfam_Exo_endo_phos,superfamily_DNase I-like	-	no_errors
TPST1	8460	genome.wustl.edu	36	7	65343084	65343084	+	Silent	SNP	G	G	A			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	65343084	65343084	G	A	SNP	TPST1	NM_003596	human	genbank	54_36p	+1	validated	silent	c.237	p.R79	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517825	7517825	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7517825	7517825	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.838	p.R280G	0.997	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226540582	226540582	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	226540582	226540582	T	G	SNP	OBSCN	NM_001098623	human	genbank	54_36p	+1	reviewed	missense	c.9185	p.V3062G	0.742	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
MIR630	693215	genome.wustl.edu	36	15	70666707	70666708	+	RNA	INS	-	-	TTG			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	70666707	70666708	-	TTG	INS	MIRN630	ENST00000384957	human	ensembl	54_36p	+1	known	rna	NULL	NULL	0.000:0.005	-	-	-	no_errors
RNF152	220441	genome.wustl.edu	36	18	57634318	57634318	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	57634318	57634318	C	T	SNP	RNF152	NM_173557	human	genbank	54_36p	-1	validated	missense	c.359	p.R120H	1.000	NULL	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors
ENSG00000215768	0	genome.wustl.edu	36	NT_113933	60403	60403	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113933	60403	60403	C	T	SNP	ENSG00000215768	ENST00000400874	human	ensembl	54_36p	-1	known	missense	c.47	p.C16Y	NULL	NULL	superfamily_Secretoglobin,HMMSmart_UTG	-	no_errors
LOC728384	728384	genome.wustl.edu	36	4	49247776	49247776	+	RNA	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	49247776	49247776	C	T	SNP	LOC728384	XR_015277	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
OPLAH	26873	genome.wustl.edu	36	8	145179456	145179456	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	145179456	145179456	G	A	SNP	OPLAH	ENST00000360660	human	ensembl	54_36p	-1	known	nonsense	c.3187	p.R1063*	0.101	HMMPfam_Hydantoinase_B	HMMPfam_Hydant_A_N,HMMPfam_Hydantoinase_A,HMMPfam_Hydantoinase_B	-	no_errors
LOC100129826	100129826	genome.wustl.edu	36	11	1954148	1954149	+	In_Frame_Ins	INS	-	-	TCC			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	1954148	1954149	-	TCC	INS	LOC100129826	XM_001719045	human	genbank	54_36p	+1	model	in_frame_ins	c.256_257	p.88in_frame_insL	0.006:0.004	NULL	NULL	-	no_errors
ENSG00000205331	0	genome.wustl.edu	36	12	53963818	53963818	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	53963818	53963818	G	T	SNP	ENSG00000205331	ENST00000379669	human	ensembl	54_36p	+1	known	missense	c.18	p.M6I	0.005	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1	-	no_stop_codon
LOC100132025	100132025	genome.wustl.edu	36	15	20956389	20956389	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	20956389	20956389	A	T	SNP	LOC100132025	XM_001723658	human	genbank	54_36p	-1	model	missense	c.214	p.S72T	0.068	NULL	NULL	-	no_errors
LOC730651	730651	genome.wustl.edu	36	19	12166944	12166944	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12166944	12166944	G	-	DEL	LOC730651	XM_001719635	human	genbank	54_36p	+1	model	frame_shift_del	c.41	p.W14fs	0.001	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RBM44	375316	genome.wustl.edu	36	2	238391939	238391939	+	Silent	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	238391939	238391939	C	T	SNP	RBM44	NM_001080504	human	genbank	54_36p	+1	validated	silent	c.1638	p.S546	0.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
RPL4	6124	genome.wustl.edu	36	15	64581298	64581298	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	64581298	64581298	C	T	SNP	RPL4	NM_000968	human	genbank	54_36p	-1	reviewed	missense	c.428	p.R143H	1.000	superfamily_Ribosomal protein L4,HMMPfam_Ribosomal_L4	superfamily_Ribosomal protein L4,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Ribosomal_L4,PatternScan_RIBOSOMAL_L1E	-	no_errors
LOC728364	728364	genome.wustl.edu	36	4	49186092	49186092	+	RNA	SNP	A	A	G			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	49186092	49186092	A	G	SNP	LOC728364	XR_036845	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.066	-	-	-	pseudogene
PIWIL4	143689	genome.wustl.edu	36	11	93940384	93940384	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	93940384	93940384	G	C	SNP	PIWIL4	NM_152431	human	genbank	54_36p	+1	validated	missense	c.52	p.A18P	0.000	NULL	superfamily_PAZ domain,HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like	-	no_errors
NTRK3	4916	genome.wustl.edu	36	15	86471424	86471424	+	Silent	SNP	G	G	A			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	86471424	86471424	G	A	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	silent	c.1266	p.T422	1.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_LRR_1,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_SM00220,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
LOC727770	727770	genome.wustl.edu	36	1	141770280	141770280	+	RNA	SNP	A	A	T	rs2951565	byCluster;by2Hit2Allele;byHapMap	TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	141770280	141770280	A	T	SNP	LOC727770	XR_037208	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.993	-	-	-	pseudogene
LOC645001	645001	genome.wustl.edu	36	19	47026786	47026786	+	RNA	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47026786	47026786	C	T	SNP	LOC645001	XR_017501	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.029	-	-	-	pseudogene
ENSG00000206192	0	genome.wustl.edu	36	13	18291386	18291386	+	Silent	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	18291386	18291386	C	T	SNP	ENSG00000206192	ENST00000310960	human	ensembl	54_36p	-1	known	silent	c.222	p.Q74	0.466	NULL	NULL	-	no_errors
HSPA13	6782	genome.wustl.edu	36	21	14667840	14667840	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	14667840	14667840	T	C	SNP	HSPA13	NM_006948	human	genbank	54_36p	-1	reviewed	missense	c.1385	p.N462S	1.000	NULL	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3	-	no_errors
SLC43A1	8501	genome.wustl.edu	36	11	57009230	57009230	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	57009230	57009230	T	C	SNP	SLC43A1	NM_003627	human	genbank	54_36p	-1	provisional	missense	c.1595	p.Y532C	0.999	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518334	7518334	+	Splice_Site	SNP	C	C	T			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7518334	7518334	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.673-1	e6-1	0.990	-	-	-	no_errors
PCDHA9	9752	genome.wustl.edu	36	5	140209674	140209674	+	Silent	SNP	G	G	A			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140209674	140209674	G	A	SNP	PCDHA9	NM_031857	human	genbank	54_36p	+1	reviewed	silent	c.1410	p.P470	0.333	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
POTEKP	440915	genome.wustl.edu	36	2	132083434	132083434	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2829-03B-01W-0728-08	TCGA-AB-2829-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	132083434	132083434	T	C	SNP	ACTBL3	ENST00000397487	human	ensembl	54_36p	+1	known	missense	c.1019	p.L340S	0.016	NULL	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_stop_codon
