Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SLC34A2	10568	genome.wustl.edu	36	4	25287079	25287079	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	25287079	25287079	C	T	SNP	SLC34A2	NM_006424	human	genbank	54_36p	+1	validated	silent	c.1683	p.P561	0.868	NULL	HMMPfam_Na_Pi_cotrans	-	no_errors
EEF1A1	1915	genome.wustl.edu	36	6	74286449	74286449	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	74286449	74286449	T	C	SNP	EEF1A1	NM_001402	human	genbank	54_36p	-1	reviewed	missense	c.22	p.I8V	1.000	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NOL6	65083	genome.wustl.edu	36	9	33456081	33456081	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	33456081	33456081	C	T	SNP	NOL6	NM_022917	human	genbank	54_36p	-1	reviewed	silent	c.2352	p.T784	0.951	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
TLN1	7094	genome.wustl.edu	36	9	35696030	35696030	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	35696030	35696030	G	C	SNP	TLN1	NM_006289	human	genbank	54_36p	-1	reviewed	missense	c.5440	p.L1814V	1.000	NULL	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-	no_errors
MYO15A	51168	genome.wustl.edu	36	17	18003916	18003916	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	18003916	18003916	G	-	DEL	MYO15A	ENST00000359910	human	ensembl	54_36p	+1	known	frame_shift_del	c.267	p.V90fs	0.047	HMMSmart_SM00139	HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_Second domain of FERM	-	no_errors
MFN2	9927	genome.wustl.edu	36	1	11988497	11988497	+	Silent	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	11988497	11988497	T	C	SNP	MFN2	NM_014874	human	genbank	54_36p	+1	reviewed	silent	c.1638	p.S546	0.861	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin	-	no_errors
VWF	7450	genome.wustl.edu	36	12	5929299	5929299	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	5929299	5929299	C	T	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	missense	c.8167	p.E2723K	0.928	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
XRCC1	7515	genome.wustl.edu	36	19	48748229	48748229	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	48748229	48748229	G	A	SNP	XRCC1	NM_006297	human	genbank	54_36p	-1	reviewed	missense	c.862	p.P288S	0.242	NULL	HMMPfam_XRCC1_N,superfamily_Galactose-binding domain-like,superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292	-	no_errors
EIF3L	51386	genome.wustl.edu	36	22	36577262	36577262	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	36577262	36577262	C	G	SNP	EIF3L	NM_016091	human	genbank	54_36p	+1	validated	missense	c.112	p.R38G	1.000	NULL	HMMPfam_Paf67	-	no_errors
ILDR1	286676	genome.wustl.edu	36	3	123195454	123195454	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	123195454	123195454	G	A	SNP	ILDR1	NM_175924	human	genbank	54_36p	-1	provisional	nonsense	c.700	p.Q234*	0.556	NULL	HMMSmart_IG,HMMPfam_LSR,superfamily_SSF48726	-	no_errors
CLN3	1201	genome.wustl.edu	36	16	28402907	28402907	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	28402907	28402907	C	A	SNP	CLN3	NM_000086	human	genbank	54_36p	-1	reviewed	missense	c.711	p.Q237H	0.011	superfamily_MFS general substrate transporter,HMMPfam_CLN3	superfamily_MFS general substrate transporter,HMMPfam_CLN3	-	no_errors
SNORD115-8	100033445	genome.wustl.edu	36	15	22980584	22980584	+	RNA	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	22980584	22980584	A	G	SNP	SNORD115-8	NR_003300	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.971	-	-	-	no_errors
SULT1A2	6799	genome.wustl.edu	36	16	28511222	28511222	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	28511222	28511222	C	T	SNP	SULT1A2	NM_001054	human	genbank	54_36p	-1	reviewed	missense	c.638	p.R213H	0.038	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
TMEM108	66000	genome.wustl.edu	36	3	134582634	134582634	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	134582634	134582634	C	T	SNP	TMEM108	NM_023943	human	genbank	54_36p	+1	validated	silent	c.1389	p.C463	1.000	NULL	PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
TSGA10IP	254187	genome.wustl.edu	36	11	65472142	65472142	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65472142	65472142	C	T	SNP	TSGA10IP	NM_152762	human	genbank	54_36p	+1	validated	silent	c.1098	p.F366	0.005	NULL	NULL	-	pseudogene
PLEKHG6	55200	genome.wustl.edu	36	12	6306817	6306817	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	6306817	6306817	T	C	SNP	PLEKHG6	NM_018173	human	genbank	54_36p	+1	validated	missense	c.1807	p.S603P	0.000	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	7646772	7646772	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	7646772	7646772	C	T	SNP	CAMTA1	NM_015215	human	genbank	54_36p	+1	validated	silent	c.1578	p.T526	0.952	NULL	HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
WNK2	65268	genome.wustl.edu	36	9	95061409	95061409	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	95061409	95061409	G	A	SNP	WNK2	NM_006648	human	genbank	54_36p	+1	reviewed	missense	c.2758	p.A920T	0.257	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NOS1AP	9722	genome.wustl.edu	36	1	160569520	160569520	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	160569520	160569520	T	C	SNP	NOS1AP	NM_014697	human	genbank	54_36p	+1	reviewed	missense	c.434	p.V145A	1.000	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	-	no_errors
SLC2A6	11182	genome.wustl.edu	36	9	135333270	135333270	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	135333270	135333270	G	T	SNP	SLC2A6	NM_017585	human	genbank	54_36p	-1	validated	missense	c.182	p.P61H	0.999	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
ZBTB16	7704	genome.wustl.edu	36	11	113626428	113626428	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	113626428	113626428	G	A	SNP	ZBTB16	NM_001018011	human	genbank	54_36p	+1	reviewed	missense	c.1963	p.E655K	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2	-	no_errors
ARMC4	55130	genome.wustl.edu	36	10	28264118	28264118	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	28264118	28264118	C	T	SNP	ARMC4	NM_018076	human	genbank	54_36p	-1	validated	silent	c.2322	p.V774	1.000	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm	-	no_errors
ELMO2	63916	genome.wustl.edu	36	20	44433431	44433431	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	44433431	44433431	C	A	SNP	ELMO2	NM_133171	human	genbank	54_36p	-1	reviewed	missense	c.1768	p.G590W	1.000	superfamily_PH domain-like	superfamily_ARM repeat,HMMPfam_ELMO_CED12,superfamily_PH domain-like	-	no_errors
RANBP10	57610	genome.wustl.edu	36	16	66319185	66319185	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66319185	66319185	G	A	SNP	RANBP10	NM_020850	human	genbank	54_36p	-1	provisional	silent	c.1590	p.G530	1.000	HMMSmart_CRA,HMMPfam_RanBPM_CRA	HMMPfam_SPRY,HMMSmart_SPRY,HMMSmart_LisH,HMMSmart_CTLH,HMMSmart_CRA,HMMPfam_RanBPM_CRA	-	no_errors
TRPV5	56302	genome.wustl.edu	36	7	142337588	142337588	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	142337588	142337588	G	A	SNP	TRPV5	NM_019841	human	genbank	54_36p	-1	reviewed	silent	c.204	p.C68	0.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
DBF4	10926	genome.wustl.edu	36	7	87374707	87374707	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	87374707	87374707	G	A	SNP	DBF4	NM_006716	human	genbank	54_36p	+1	validated	missense	c.1318	p.A440T	0.023	NULL	HMMPfam_zf-DBF,HMMSmart_SM00586	-	no_errors
RPGR	6103	genome.wustl.edu	36	X	38035669	38035669	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	38035669	38035669	T	C	SNP	RPGR	NM_001034853	human	genbank	54_36p	-1	reviewed	missense	c.1427	p.D476G	0.354	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
GNL3	26354	genome.wustl.edu	36	3	52699660	52699660	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	52699660	52699660	A	T	SNP	GNL3	NM_014366	human	genbank	54_36p	+1	validated	missense	c.554	p.K185M	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GN3L_Grn1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1	-	no_errors
DHRS7B	25979	genome.wustl.edu	36	17	21032659	21032659	+	Silent	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	21032659	21032659	G	T	SNP	DHRS7B	NM_015510	human	genbank	54_36p	+1	validated	silent	c.663	p.L221	0.995	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104489903	104489903	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	104489903	104489903	C	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.2930	p.G977D	0.000	NULL	HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PGCP	10404	genome.wustl.edu	36	8	97916466	97916466	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	97916466	97916466	C	T	SNP	PGCP	NM_016134	human	genbank	54_36p	+1	provisional	nonsense	c.523	p.Q175*	1.000	NULL	superfamily_SSF53187,HMMPfam_Peptidase_M28	-	no_errors
DISP1	84976	genome.wustl.edu	36	1	221242686	221242686	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	221242686	221242686	G	A	SNP	DISP1	NM_032890	human	genbank	54_36p	+1	reviewed	missense	c.1324	p.A442T	0.072	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
BNIP3L	665	genome.wustl.edu	36	8	26308682	26308682	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	26308682	26308682	G	A	SNP	BNIP3L	NM_004331	human	genbank	54_36p	+1	reviewed	missense	c.304	p.G102R	1.000	HMMPfam_BNIP3	HMMPfam_BNIP3	-	no_errors
ATP8B2	57198	genome.wustl.edu	36	1	152584421	152584421	+	Splice_Site	SNP	G	G	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	152584421	152584421	G	C	SNP	ATP8B2	NM_020452	human	genbank	54_36p	+1	reviewed	splice_site	c.2570-1	e23-1	1.000	-	-	-	no_errors
KLHL36	79786	genome.wustl.edu	36	16	83252820	83252820	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	83252820	83252820	G	A	SNP	KLHL36	NM_024731	human	genbank	54_36p	+1	provisional	silent	c.1431	p.R477	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	-	no_errors
C1orf127	148345	genome.wustl.edu	36	1	10940374	10940374	+	Silent	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	10940374	10940374	T	A	SNP	C1orf127	NM_173507	human	genbank	54_36p	-1	predicted	silent	c.132	p.R44	0.973	NULL	NULL	-	no_errors
CDK3	1018	genome.wustl.edu	36	17	71510940	71510940	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71510940	71510940	G	T	SNP	CDK3	NM_001258	human	genbank	54_36p	+1	validated	missense	c.658	p.G220W	1.000	HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like	HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CHST6	4166	genome.wustl.edu	36	16	74070129	74070129	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	74070129	74070129	G	T	SNP	CHST6	NM_021615	human	genbank	54_36p	-1	provisional	missense	c.1099	p.Q367K	1.000	NULL	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	-	no_errors
KCNH3	23416	genome.wustl.edu	36	12	48237422	48237422	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	48237422	48237422	C	T	SNP	KCNH3	NM_012284	human	genbank	54_36p	+1	validated	nonsense	c.2671	p.Q891*	0.998	NULL	HMMSmart_PAS,HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMSmart_PAC,HMMPfam_Ion_trans,HMMPfam_PAS,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF55785,superfamily_SSF81324	-	no_errors
LRRC30	339291	genome.wustl.edu	36	18	7221740	7221740	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	7221740	7221740	G	A	SNP	LRRC30	NM_001105581	human	genbank	54_36p	+1	provisional	missense	c.604	p.A202T	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors
MINPP1	9562	genome.wustl.edu	36	10	89255045	89255045	+	Silent	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	89255045	89255045	G	T	SNP	MINPP1	NM_004897	human	genbank	54_36p	+1	validated	silent	c.393	p.L131	0.985	superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A	superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A,PatternScan_ER_TARGET	-	no_errors
LDB1	8861	genome.wustl.edu	36	10	103859430	103859430	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	103859430	103859430	C	T	SNP	LDB1	NM_003893	human	genbank	54_36p	-1	validated	missense	c.541	p.A181T	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors
LOC100131240	100131240	genome.wustl.edu	36	9	70593076	70593076	+	RNA	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	70593076	70593076	C	T	SNP	LOC100131240	XR_038634	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
PTCD1	26024	genome.wustl.edu	36	7	98860611	98860611	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	98860611	98860611	C	T	SNP	PTCD1	NM_015545	human	genbank	54_36p	-1	validated	missense	c.1480	p.A494T	1.000	NULL	HMMPfam_PPR	-	no_errors
C3orf19	51244	genome.wustl.edu	36	3	14687475	14687475	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	14687475	14687475	C	A	SNP	C3orf19	NM_016474	human	genbank	54_36p	+1	validated	missense	c.1174	p.P392T	1.000	NULL	NULL	-	no_errors
CDC6	990	genome.wustl.edu	36	17	35705221	35705221	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	35705221	35705221	C	T	SNP	CDC6	NM_001254	human	genbank	54_36p	+1	reviewed	silent	c.1171	p.L391	0.979	superfamily_SSF52540,HMMPfam_AAA	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF46785,HMMPfam_Cdc6_C	-	no_errors
DGKD	8527	genome.wustl.edu	36	2	233961652	233961652	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	233961652	233961652	A	T	SNP	DGKD	NM_152879	human	genbank	54_36p	+1	reviewed	missense	c.167	p.K56I	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors
CCDC47	57003	genome.wustl.edu	36	17	59192359	59192359	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	59192359	59192359	C	-	DEL	CCDC47	NM_020198	human	genbank	54_36p	-1	validated	frame_shift_del	c.632	p.G211fs	0.997	HMMPfam_DUF1682	HMMPfam_DUF1682	-	no_errors
TJAP1	93643	genome.wustl.edu	36	6	43578001	43578001	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43578001	43578001	T	A	SNP	TJAP1	NM_080604	human	genbank	54_36p	+1	reviewed	missense	c.293	p.L98Q	1.000	NULL	NULL	-	no_errors
ADHFE1	137872	genome.wustl.edu	36	8	67522073	67522073	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	67522073	67522073	G	A	SNP	ADHFE1	NM_144650	human	genbank	54_36p	+1	validated	missense	c.571	p.G191R	0.983	superfamily_Dehydroquinate synthase-like,HMMPfam_Fe-ADH	superfamily_Dehydroquinate synthase-like,HMMPfam_Fe-ADH	-	no_errors
NOD1	10392	genome.wustl.edu	36	7	30459016	30459016	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	30459016	30459016	G	A	SNP	NOD1	NM_006092	human	genbank	54_36p	-1	validated	missense	c.542	p.A181V	0.306	NULL	superfamily_DEATH_like,HMMPfam_CARD,HMMPfam_NACHT,superfamily_SSF52047	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40143967	40143967	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	40143967	40143967	C	T	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.4298	p.R1433H	0.836	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
ZSCAN10	84891	genome.wustl.edu	36	16	3080248	3080248	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	3080248	3080248	G	A	SNP	ZSCAN10	NM_032805	human	genbank	54_36p	-1	provisional	silent	c.1023	p.R341	0.849	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZSWIM4	65249	genome.wustl.edu	36	19	13776674	13776674	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	13776674	13776674	T	A	SNP	ZSWIM4	NM_023072	human	genbank	54_36p	+1	validated	missense	c.424	p.S142T	0.999	HMMPfam_SWIM	HMMPfam_SWIM	-	no_errors
OR4F16	81399	genome.wustl.edu	36	1	610969	610969	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	610969	610969	C	T	SNP	OR4F16	NM_001005277	human	genbank	54_36p	-1	provisional	missense	c.929	p.R310K	0.000	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
EIF4A2	1974	genome.wustl.edu	36	3	187986439	187986439	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	187986439	187986439	T	C	SNP	EIF4A2	NM_001967	human	genbank	54_36p	+1	validated	missense	c.422	p.V141A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
SLC25A3	5250	genome.wustl.edu	36	12	97513689	97513689	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	97513689	97513689	G	A	SNP	SLC25A3	NM_002635	human	genbank	54_36p	+1	reviewed	missense	c.211	p.G71R	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212883083	212883083	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	212883083	212883083	A	T	SNP	CENPF	NM_016343	human	genbank	54_36p	+1	reviewed	missense	c.4779	p.Q1593H	0.268	NULL	HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F	-	no_errors
ACSF3	197322	genome.wustl.edu	36	16	87727142	87727142	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	87727142	87727142	C	T	SNP	ACSF3	NM_174917	human	genbank	54_36p	+1	validated	missense	c.1337	p.A446V	0.682	superfamily_SSF56801,HMMPfam_AMP-binding	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
CBLC	23624	genome.wustl.edu	36	19	49976417	49976417	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	49976417	49976417	A	T	SNP	CBLC	NM_012116	human	genbank	54_36p	+1	validated	missense	c.614	p.H205L	1.000	HMMPfam_Cbl_N2,superfamily_EF-hand	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
SPTBN1	6711	genome.wustl.edu	36	2	54730370	54730370	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	54730370	54730370	G	A	SNP	SPTBN1	NM_003128	human	genbank	54_36p	+1	reviewed	missense	c.5317	p.A1773T	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
MKRN2	23609	genome.wustl.edu	36	3	12586689	12586689	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	12586689	12586689	T	A	SNP	MKRN2	NM_014160	human	genbank	54_36p	+1	provisional	missense	c.275	p.V92E	0.104	NULL	HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79065730	79065730	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	79065730	79065730	C	T	SNP	CMYA5	NM_153610	human	genbank	54_36p	+1	validated	missense	c.5386	p.H1796Y	0.021	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
MRPL54	116541	genome.wustl.edu	36	19	3718343	3718343	+	Silent	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	3718343	3718343	A	G	SNP	MRPL54	NM_172251	human	genbank	54_36p	+1	reviewed	silent	c.369	p.K123	0.997	HMMPfam_Ribosomal_L37	HMMPfam_Ribosomal_L37	-	no_errors
CBFB	865	genome.wustl.edu	36	16	65628109	65628109	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	65628109	65628109	C	T	SNP	CBFB	NM_022845	human	genbank	54_36p	+1	reviewed	nonsense	c.232	p.R78*	1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors
MAGI2	9863	genome.wustl.edu	36	7	78474382	78474382	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	78474382	78474382	C	T	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	silent	c.378	p.Q126	0.998	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDH23	64072	genome.wustl.edu	36	10	73237281	73237281	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	73237281	73237281	G	A	SNP	CDH23	NM_022124	human	genbank	54_36p	+1	reviewed	missense	c.8311	p.G2771S	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
GRAMD1A	57655	genome.wustl.edu	36	19	40204460	40204460	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	40204460	40204460	G	A	SNP	GRAMD1A	NM_020895	human	genbank	54_36p	+1	validated	silent	c.1605	p.K535	0.983	NULL	HMMPfam_GRAM,HMMSmart_SM00568	-	no_errors
KRTAP5-10	387273	genome.wustl.edu	36	11	70957589	70957589	+	Silent	SNP	C	C	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	70957589	70957589	C	G	SNP	KRTAP5-10	ENST00000376536	human	ensembl	54_36p	+1	known	silent	c.465	p.S155	1.000	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_VWFC_1	-	no_errors
SLC7A10	56301	genome.wustl.edu	36	19	38395382	38395382	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38395382	38395382	A	G	SNP	SLC7A10	NM_019849	human	genbank	54_36p	-1	validated	missense	c.512	p.L171P	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
STAT5B	6777	genome.wustl.edu	36	17	37607882	37607882	+	Splice_Site	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	37607882	37607882	A	G	SNP	STAT5B	NM_012448	human	genbank	54_36p	-1	reviewed	splice_site	c.2237+2	e17+2	1.000	-	-	-	no_errors
CAMSAP1	157922	genome.wustl.edu	36	9	137853598	137853598	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	137853598	137853598	G	A	SNP	CAMSAP1	NM_015447	human	genbank	54_36p	-1	validated	silent	c.1896	p.L632	0.989	NULL	superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors
POLR2A	5430	genome.wustl.edu	36	17	7346039	7346039	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7346039	7346039	G	A	SNP	POLR2A	NM_000937	human	genbank	54_36p	+1	provisional	missense	c.2446	p.G816R	1.000	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_4	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_6,HMMPfam_RNA_pol_Rpb1_7,HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT	-	no_errors
LOC388996	388996	genome.wustl.edu	36	2	91173019	91173019	+	RNA	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91173019	91173019	C	T	SNP	LOC388996	XR_017571	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.988	-	-	-	pseudogene
DNAH8	1769	genome.wustl.edu	36	6	38899415	38899415	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	38899415	38899415	G	T	SNP	DNAH8	NM_001371	human	genbank	54_36p	+1	validated	missense	c.3169	p.V1057F	0.924	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
EIF2AK4	440275	genome.wustl.edu	36	15	38105510	38105510	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	38105510	38105510	T	A	SNP	EIF2AK4	NM_001013703	human	genbank	54_36p	+1	validated	missense	c.4430	p.V1477E	0.999	NULL	superfamily_UBC-like,HMMPfam_RWD,HMMSmart_SM00591,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_DNA_POLYMERASE_B,PatternScan_PROTEIN_KINASE_ST,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b	-	no_errors
DFFB	1677	genome.wustl.edu	36	1	3776042	3776042	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	3776042	3776042	C	T	SNP	DFFB	NM_004402	human	genbank	54_36p	+1	reviewed	missense	c.524	p.P175L	0.015	superfamily_His-Me finger endonucleases,HMMPfam_DFF40	superfamily_CAD  PB1 domains,HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_His-Me finger endonucleases,HMMPfam_DFF40	-	no_errors
FLRT2	23768	genome.wustl.edu	36	14	85158452	85158452	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	85158452	85158452	C	T	SNP	FLRT2	NM_013231	human	genbank	54_36p	+1	reviewed	silent	c.841	p.L281	1.000	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF52058	-	no_errors
ENPP2	5168	genome.wustl.edu	36	8	120675210	120675210	+	Silent	SNP	C	C	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	120675210	120675210	C	G	SNP	ENPP2	NM_006209	human	genbank	54_36p	-1	reviewed	silent	c.1200	p.L400	1.000	superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,superfamily_His-Me finger endonucleases,HMMSmart_SM00477,HMMPfam_Endonuclease_NS	-	no_errors
GPC4	2239	genome.wustl.edu	36	X	132285852	132285852	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	132285852	132285852	C	T	SNP	GPC4	NM_001448	human	genbank	54_36p	-1	reviewed	missense	c.698	p.S233N	0.951	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
SBK1	388228	genome.wustl.edu	36	16	28236254	28236254	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	28236254	28236254	T	C	SNP	SBK1	NM_001024401	human	genbank	54_36p	+1	provisional	missense	c.41	p.L14P	1.000	NULL	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MMP7	4316	genome.wustl.edu	36	11	101906615	101906615	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	101906615	101906615	C	T	SNP	MMP7	NM_002423	human	genbank	54_36p	-1	reviewed	silent	c.27	p.V9	0.014	NULL	superfamily_PGBD_like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE	-	no_errors
CEP112	201134	genome.wustl.edu	36	17	61278514	61278514	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	61278514	61278514	C	T	SNP	CCDC46	NM_145036	human	genbank	54_36p	-1	validated	missense	c.2264	p.R755H	1.000	NULL	NULL	-	no_errors
ENSG00000118903	0	genome.wustl.edu	36	13	76400254	76400254	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	76400254	76400254	C	T	SNP	ENSG00000118903	ENST00000237763	human	ensembl	54_36p	+1	known	silent	c.54	p.H18	1.000	NULL	HMMPfam_NAC	-	no_errors
FAM98C	147965	genome.wustl.edu	36	19	43587493	43587493	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	43587493	43587493	G	A	SNP	FAM98C	NM_174905	human	genbank	54_36p	+1	validated	missense	c.455	p.G152D	0.030	HMMPfam_DUF2465	HMMPfam_DUF2465	-	no_errors
ZNF335	63925	genome.wustl.edu	36	20	44015851	44015851	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	44015851	44015851	G	A	SNP	ZNF335	NM_022095	human	genbank	54_36p	-1	reviewed	silent	c.2586	p.G862	0.003	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC647169	647169	genome.wustl.edu	36	6	52751009	52751009	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	52751009	52751009	A	G	SNP	LOC647169	XM_930196	human	genbank	54_36p	-1	model	missense	c.176	p.L59P	1.000	superfamily_Glutathione S-transferase (GST) C-terminal domain	superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	-	no_errors
APC	324	genome.wustl.edu	36	5	112182794	112182794	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	112182794	112182794	A	G	SNP	APC	NM_000038	human	genbank	54_36p	+1	reviewed	missense	c.1166	p.N389S	1.000	HMMSmart_SM00185,superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat	-	no_errors
SPNS3	201305	genome.wustl.edu	36	17	4303180	4303180	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	4303180	4303180	C	T	SNP	SPNS3	NM_182538	human	genbank	54_36p	+1	validated	silent	c.1044	p.S348	0.990	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
GPR113	165082	genome.wustl.edu	36	2	26387405	26387405	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	26387405	26387405	C	A	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	missense	c.2098	p.G700C	0.008	HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
HEATR7B2	133558	genome.wustl.edu	36	5	41074682	41074682	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	41074682	41074682	G	A	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	silent	c.2127	p.A709	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
DAB2IP	153090	genome.wustl.edu	36	9	123562288	123562288	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	123562288	123562288	G	A	SNP	DAB2IP	NM_032552	human	genbank	54_36p	+1	validated	missense	c.835	p.V279M	0.999	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239	HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
UBE2C	11065	genome.wustl.edu	36	20	43878771	43878771	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	43878771	43878771	G	A	SNP	UBE2C	NM_007019	human	genbank	54_36p	+1	reviewed	silent	c.498	p.L166	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1	-	no_errors
BBS12	166379	genome.wustl.edu	36	4	123882679	123882679	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	123882679	123882679	A	T	SNP	BBS12	NM_152618	human	genbank	54_36p	+1	validated	missense	c.182	p.D61V	1.000	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like	-	no_errors
NXF5	55998	genome.wustl.edu	36	X	100980034	100980034	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	100980034	100980034	C	T	SNP	NXF5	NM_032946	human	genbank	54_36p	-1	reviewed	missense	c.740	p.G247D	0.954	superfamily_L domain-like	superfamily_RNA-binding domain RBD,HMMPfam_Tap-RNA_bind,superfamily_L domain-like,superfamily_NTF2-like	-	no_errors
GRK7	131890	genome.wustl.edu	36	3	142980171	142980171	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	142980171	142980171	C	T	SNP	GRK7	NM_139209	human	genbank	54_36p	+1	reviewed	missense	c.355	p.P119S	0.000	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors
SPG11	80208	genome.wustl.edu	36	15	42647003	42647003	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	42647003	42647003	G	A	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	missense	c.6665	p.A2222V	1.000	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
ITGB2	3689	genome.wustl.edu	36	21	45152476	45152476	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	45152476	45152476	C	T	SNP	ITGB2	ENST00000397846	human	ensembl	54_36p	-1	known	missense	c.197	p.R66Q	0.000	NULL	NULL	-	no_errors
PSKH1	5681	genome.wustl.edu	36	16	66500561	66500561	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66500561	66500561	G	A	SNP	PSKH1	NM_006742	human	genbank	54_36p	+1	validated	silent	c.408	p.G136	0.935	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NT5E	4907	genome.wustl.edu	36	6	86258436	86258436	+	Silent	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	86258436	86258436	T	C	SNP	NT5E	NM_002526	human	genbank	54_36p	+1	validated	silent	c.1383	p.L461	0.971	HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C	superfamily_SSF56300,PatternScan_5_NUCLEOTIDASE_1,HMMPfam_Metallophos,PatternScan_5_NUCLEOTIDASE_2,HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C	-	no_errors
ARHGAP6	395	genome.wustl.edu	36	X	11110146	11110146	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	11110146	11110146	C	T	SNP	ARHGAP6	NM_013427	human	genbank	54_36p	-1	reviewed	silent	c.1287	p.V429	1.000	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ANKS6	203286	genome.wustl.edu	36	9	100592207	100592207	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	100592207	100592207	C	T	SNP	ANKS6	NM_173551	human	genbank	54_36p	-1	provisional	missense	c.862	p.D288N	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
TGM5	9333	genome.wustl.edu	36	15	41318667	41318667	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	41318667	41318667	T	C	SNP	TGM5	NM_201631	human	genbank	54_36p	-1	validated	missense	c.1091	p.Q364R	1.000	superfamily_Cysteine proteinases	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases	-	no_errors
UNC5B	219699	genome.wustl.edu	36	10	72723180	72723180	+	Silent	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	72723180	72723180	A	G	SNP	UNC5B	NM_170744	human	genbank	54_36p	+1	validated	silent	c.1785	p.E595	0.999	HMMPfam_ZU5,HMMSmart_SM00218	HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
RNF123	63891	genome.wustl.edu	36	3	49732998	49732998	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49732998	49732998	G	A	SNP	RNF123	NM_022064	human	genbank	54_36p	+1	reviewed	missense	c.3551	p.R1184H	1.000	NULL	HMMSmart_SM00184,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
THSD7A	221981	genome.wustl.edu	36	7	11466855	11466855	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	11466855	11466855	G	-	DEL	THSD7A	NM_015204	human	genbank	54_36p	-1	validated	frame_shift_del	c.2564	p.P855fs	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
JPH2	57158	genome.wustl.edu	36	20	42222436	42222436	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	42222436	42222436	G	A	SNP	JPH2	NM_020433	human	genbank	54_36p	-1	reviewed	silent	c.405	p.N135	0.987	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN,PatternScan_SUGAR_TRANSPORT_1,PatternScan_XYLOSE_ISOMERASE_1	-	no_errors
PLCD4	84812	genome.wustl.edu	36	2	219207559	219207559	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219207559	219207559	C	T	SNP	PLCD4	NM_032726	human	genbank	54_36p	+1	provisional	missense	c.1858	p.P620S	1.000	superfamily_PLC-like phosphodiesterases	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
GGNBP2	79893	genome.wustl.edu	36	17	32017695	32017695	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	32017695	32017695	G	A	SNP	GGNBP2	NM_024835	human	genbank	54_36p	+1	validated	silent	c.1797	p.E599	1.000	NULL	NULL	-	no_errors
HPS1	3257	genome.wustl.edu	36	10	100192894	100192894	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	100192894	100192894	G	A	SNP	HPS1	NM_000195	human	genbank	54_36p	-1	reviewed	nonsense	c.94	p.Q32*	0.959	NULL	NULL	-	no_errors
KCNK18	338567	genome.wustl.edu	36	10	118947087	118947087	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	118947087	118947087	A	G	SNP	KCNK18	NM_181840	human	genbank	54_36p	+1	provisional	missense	c.98	p.Y33C	0.799	superfamily_SSF81324	superfamily_SSF81324,HMMPfam_Ion_trans_2	-	no_errors
TUB	7275	genome.wustl.edu	36	11	8067748	8067748	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	8067748	8067748	G	A	SNP	TUB	NM_003320	human	genbank	54_36p	+1	reviewed	silent	c.219	p.E73	1.000	NULL	superfamily_Tubby_C,HMMPfam_Tub,PatternScan_TUB_1,PatternScan_TUB_2	-	no_errors
NUMA1	4926	genome.wustl.edu	36	11	71399479	71399479	+	Splice_Site	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	71399479	71399479	C	T	SNP	NUMA1	NM_006185	human	genbank	54_36p	-1	validated	splice_site	c.4719+1	e15+1	0.998	-	-	-	no_errors
PLP1	5354	genome.wustl.edu	36	X	102927254	102927254	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	102927254	102927254	T	A	SNP	PLP1	NM_000533	human	genbank	54_36p	+1	reviewed	missense	c.92	p.L31Q	1.000	HMMPfam_Myelin_PLP,PatternScan_MYELIN_PLP_1	HMMPfam_Myelin_PLP,PatternScan_MYELIN_PLP_1,HMMSmart_SM00002,PatternScan_MYELIN_PLP_2	-	no_errors
PPP2R1B	5519	genome.wustl.edu	36	11	111129475	111129475	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	111129475	111129475	C	T	SNP	PPP2R1B	NM_181699	human	genbank	54_36p	-1	reviewed	missense	c.1066	p.A356T	1.000	superfamily_ARM-type_fold,HMMPfam_HEAT	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors
PRDX4	10549	genome.wustl.edu	36	X	23614373	23614373	+	Nonstop_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	23614373	23614373	A	G	SNP	PRDX4	NM_006406	human	genbank	54_36p	+1	reviewed	nonstop	c.816	p.*272W	1.000	NULL	superfamily_Thiordxn-like_fd,HMMPfam_AhpC-TSA,HMMPfam_1-cysPrx_C	-	no_errors
GPN2	54707	genome.wustl.edu	36	1	27088788	27088788	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	27088788	27088788	G	A	SNP	GPN2	NM_018066	human	genbank	54_36p	-1	validated	silent	c.387	p.S129	0.992	superfamily_SSF52540,HMMPfam_ATP_bind_1	superfamily_SSF52540,HMMPfam_ATP_bind_1	-	no_errors
STXBP5L	9515	genome.wustl.edu	36	3	122580309	122580309	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	122580309	122580309	C	T	SNP	STXBP5L	NM_014980	human	genbank	54_36p	+1	validated	missense	c.2305	p.R769C	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40,HMMPfam_LLGL	-	no_errors
ANGPTL2	23452	genome.wustl.edu	36	9	128910591	128910591	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	128910591	128910591	C	T	SNP	ANGPTL2	NM_012098	human	genbank	54_36p	-1	reviewed	missense	c.241	p.E81K	1.000	NULL	superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
ZKSCAN1	7586	genome.wustl.edu	36	7	99459428	99459428	+	Silent	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	99459428	99459428	C	A	SNP	ZKSCAN1	NM_003439	human	genbank	54_36p	+1	validated	silent	c.363	p.P121	0.020	HMMPfam_SCAN,HMMSmart_SM00431	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PREPL	9581	genome.wustl.edu	36	2	44424516	44424517	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	44424516	44424517	-	CT	INS	PREPL	NM_006036	human	genbank	54_36p	-1	validated	frame_shift_ins	c.488_487	p.V163fs	1.000:1.000	HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain	HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors
THBS1	7057	genome.wustl.edu	36	15	37668130	37668130	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	37668130	37668130	G	T	SNP	THBS1	NM_003246	human	genbank	54_36p	+1	reviewed	missense	c.1583	p.G528V	1.000	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00179,HMMSmart_SM00210,HMMPfam_TSP_3,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,superfamily_TSP type-3 repeat,superfamily_EGF/Laminin	-	no_errors
KIAA1984	84960	genome.wustl.edu	36	9	138813482	138813482	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	138813482	138813482	G	A	SNP	KIAA1984	NM_001039374	human	genbank	54_36p	+1	validated	missense	c.178	p.A60T	0.812	NULL	NULL	-	no_errors
PITPNM2	57605	genome.wustl.edu	36	12	122064391	122064391	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	122064391	122064391	A	T	SNP	PITPNM2	NM_020845	human	genbank	54_36p	-1	validated	missense	c.230	p.L77Q	1.000	HMMPfam_IP_trans,superfamily_Bet v1-like	HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775	-	no_errors
C4orf14	84273	genome.wustl.edu	36	4	57537558	57537558	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	57537558	57537558	G	A	SNP	C4orf14	NM_032313	human	genbank	54_36p	-1	provisional	silent	c.951	p.S317	1.000	superfamily_SSF52540	superfamily_SSF52540,HMMPfam_MMR_HSR1	-	no_errors
FLRT2	23768	genome.wustl.edu	36	14	85159017	85159017	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	85159017	85159017	G	A	SNP	FLRT2	NM_013231	human	genbank	54_36p	+1	reviewed	missense	c.1406	p.R469H	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF52058	-	no_errors
ODZ3	55714	genome.wustl.edu	36	4	183933301	183933301	+	Splice_Site	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	183933301	183933301	G	A	SNP	ODZ3	NM_001080477	human	genbank	54_36p	+1	provisional	splice_site	c.5304+1	e23+1	1.000	-	-	-	no_errors
UPF3A	65110	genome.wustl.edu	36	13	114065661	114065661	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	114065661	114065661	C	T	SNP	UPF3A	NM_023011	human	genbank	54_36p	+1	reviewed	silent	c.271	p.L91	0.997	HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD	HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD	-	no_errors
HSPG2	3339	genome.wustl.edu	36	1	22040240	22040240	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	22040240	22040240	T	C	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.9454	p.T3152A	0.001	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00406,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1	-	no_errors
TMEM14B	81853	genome.wustl.edu	36	6	10863445	10863445	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	10863445	10863445	G	A	SNP	TMEM14B	NM_030969	human	genbank	54_36p	+1	validated	missense	c.287	p.G96D	1.000	HMMPfam_Tmemb_14	HMMPfam_Tmemb_14	-	no_errors
NUP93	9688	genome.wustl.edu	36	16	55420417	55420417	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	55420417	55420417	C	T	SNP	NUP93	NM_014669	human	genbank	54_36p	+1	validated	silent	c.822	p.V274	0.997	HMMPfam_Nic96	HMMPfam_Nic96	-	no_errors
PRC1	9055	genome.wustl.edu	36	15	89325820	89325820	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	89325820	89325820	G	A	SNP	PRC1	NM_003981	human	genbank	54_36p	-1	reviewed	silent	c.585	p.S195	1.000	HMMPfam_MAP65_ASE1	HMMPfam_MAP65_ASE1	-	no_errors
CSNK1E	1454	genome.wustl.edu	36	22	37022600	37022600	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	37022600	37022600	G	A	SNP	CSNK1E	ENST00000405675	human	ensembl	54_36p	-1	known	silent	c.924	p.T308	0.012	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MAPK8IP3	23162	genome.wustl.edu	36	16	1738640	1738640	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	1738640	1738640	C	T	SNP	MAPK8IP3	NM_015133	human	genbank	54_36p	+1	reviewed	silent	c.1131	p.I377	1.000	NULL	HMMPfam_Jnk-SapK_ap_N,superfamily_WD40 repeat-like	-	no_errors
SGSM2	9905	genome.wustl.edu	36	17	2214620	2214620	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	2214620	2214620	G	A	SNP	SGSM2	ENST00000397207	human	ensembl	54_36p	+1	known	missense	c.121	p.A41T	0.020	NULL	NULL	-	no_errors
LETM1	3954	genome.wustl.edu	36	4	1790916	1790916	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	1790916	1790916	T	C	SNP	LETM1	NM_012318	human	genbank	54_36p	-1	validated	missense	c.1690	p.K564E	0.994	NULL	HMMPfam_LETM1,PatternScan_EF_HAND_1	-	no_errors
SLC7A4	6545	genome.wustl.edu	36	22	19715337	19715337	+	Silent	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	19715337	19715337	G	T	SNP	SLC7A4	NM_004173	human	genbank	54_36p	-1	validated	silent	c.765	p.A255	0.073	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
MTMR1	8776	genome.wustl.edu	36	X	149656555	149656555	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	149656555	149656555	A	G	SNP	MTMR1	NM_003828	human	genbank	54_36p	+1	reviewed	missense	c.1426	p.S476G	1.000	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMSmart_SM00404,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
HIAT1	64645	genome.wustl.edu	36	1	100320277	100320277	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	100320277	100320277	G	A	SNP	HIAT1	NM_033055	human	genbank	54_36p	+1	validated	missense	c.1397	p.G466D	0.996	NULL	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
HIVEP3	59269	genome.wustl.edu	36	1	41820072	41820072	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	41820072	41820072	T	C	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	missense	c.2984	p.Q995R	1.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
GTF2IRD1	9569	genome.wustl.edu	36	7	73598013	73598013	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	73598013	73598013	G	A	SNP	GTF2IRD1	NM_016328	human	genbank	54_36p	+1	reviewed	missense	c.1670	p.S557N	0.998	NULL	HMMPfam_GTF2I	-	no_errors
ELFN2	114794	genome.wustl.edu	36	22	36100797	36100797	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	36100797	36100797	G	-	DEL	ELFN2	NM_052906	human	genbank	54_36p	-1	validated	frame_shift_del	c.724	p.Q242fs	1.000	NULL	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMSmart_FN3	-	no_errors
ARHGAP32	9743	genome.wustl.edu	36	11	128361665	128361666	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	128361665	128361666	-	T	INS	RICS	NM_014715	human	genbank	54_36p	-1	validated	frame_shift_ins	c.318_317	p.N106fs	1.000:1.000	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	-	no_errors
PIPSL	266971	genome.wustl.edu	36	10	95709579	95709579	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	95709579	95709579	C	T	SNP	PIPSL	ENST00000340582	human	ensembl	54_36p	-1	known	missense	c.1565	p.C522Y	1.000	superfamily_SSF53300,HMMSmart_VWA	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_UIM	-	no_errors
IGSF10	285313	genome.wustl.edu	36	3	152654087	152654087	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	152654087	152654087	G	A	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	nonsense	c.490	p.Q164*	1.000	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_I-set,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_ig	-	no_errors
ACE	1636	genome.wustl.edu	36	17	58915994	58915994	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	58915994	58915994	A	G	SNP	ACE	NM_152830	human	genbank	54_36p	+1	reviewed	missense	c.34	p.S12G	0.013	NULL	HMMPfam_Peptidase_M2,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors
ZNF653	115950	genome.wustl.edu	36	19	11458814	11458814	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	11458814	11458814	T	A	SNP	ZNF653	NM_138783	human	genbank	54_36p	-1	provisional	missense	c.1331	p.K444M	0.997	NULL	HMMSmart_AT_hook,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
PGM2L1	283209	genome.wustl.edu	36	11	73727185	73727185	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	73727185	73727185	T	A	SNP	PGM2L1	NM_173582	human	genbank	54_36p	-1	validated	missense	c.1742	p.E581V	1.000	superfamily_Phosphoglucomutase C-terminal domain	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase C-terminal domain	-	no_errors
RNF123	63891	genome.wustl.edu	36	3	49711519	49711519	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49711519	49711519	C	G	SNP	RNF123	NM_022064	human	genbank	54_36p	+1	reviewed	missense	c.741	p.F247L	1.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_SPRY,HMMSmart_SM00449,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
RGS11	8786	genome.wustl.edu	36	16	265290	265290	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	265290	265290	C	-	DEL	RGS11	NM_183337	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.205	p.E69fs	0.932	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP"	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
MED12	9968	genome.wustl.edu	36	X	70260207	70260207	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	70260207	70260207	C	T	SNP	MED12	NM_005120	human	genbank	54_36p	+1	validated	silent	c.1656	p.S552	1.000	NULL	HMMPfam_Med12	-	no_errors
MMP24	10893	genome.wustl.edu	36	20	33325591	33325591	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	33325591	33325591	G	A	SNP	MMP24	NM_006690	human	genbank	54_36p	+1	reviewed	missense	c.1555	p.A519T	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FRMPD2	143162	genome.wustl.edu	36	10	49056096	49056096	+	Silent	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	49056096	49056096	A	T	SNP	FRMPD2	NM_001018071	human	genbank	54_36p	-1	reviewed	silent	c.2895	p.T965	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	HMMSmart_SM00750,superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
PLEKHO2	80301	genome.wustl.edu	36	15	62934237	62934237	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	62934237	62934237	C	T	SNP	PLEKHO2	NM_025201	human	genbank	54_36p	+1	validated	missense	c.227	p.A76V	0.950	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
NES	10763	genome.wustl.edu	36	1	154907138	154907138	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154907138	154907138	C	T	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.3466	p.E1156K	0.000	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
TTLL12	23170	genome.wustl.edu	36	22	41897786	41897786	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	41897786	41897786	C	T	SNP	TTLL12	NM_015140	human	genbank	54_36p	-1	provisional	missense	c.1558	p.D520N	0.970	HMMPfam_TTL	HMMPfam_TTL	-	no_errors
ZNF91	7644	genome.wustl.edu	36	19	23337276	23337276	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	23337276	23337276	A	T	SNP	ZNF91	NM_003430	human	genbank	54_36p	-1	validated	nonsense	c.345	p.C115*	0.105	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors
DNPEP	23549	genome.wustl.edu	36	2	219956161	219956161	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219956161	219956161	G	A	SNP	DNPEP	NM_012100	human	genbank	54_36p	-1	reviewed	missense	c.872	p.A291V	0.019	superfamily_SSF53187,HMMPfam_Peptidase_M18	superfamily_SSF53187,HMMPfam_Peptidase_M18	-	no_errors
CCDC155	147872	genome.wustl.edu	36	19	54602012	54602012	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	54602012	54602012	A	T	SNP	CCDC155	NM_144688	human	genbank	54_36p	+1	provisional	missense	c.856	p.M286L	0.337	NULL	NULL	-	no_errors
IFIT3	3437	genome.wustl.edu	36	10	91089226	91089226	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	91089226	91089226	T	A	SNP	IFIT3	NM_001031683	human	genbank	54_36p	+1	validated	nonsense	c.834	p.Y278*	0.020	superfamily_TPR-like	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors
DNMT1	1786	genome.wustl.edu	36	19	10148990	10148990	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	10148990	10148990	T	A	SNP	DNMT1	NM_001379	human	genbank	54_36p	-1	reviewed	missense	c.499	p.I167F	0.993	NULL	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_DNA_methylase,HMMPfam_zf-CXXC,HMMPfam_DMAP_binding,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
DNAJC11	55735	genome.wustl.edu	36	1	6650374	6650374	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	6650374	6650374	C	T	SNP	DNAJC11	NM_018198	human	genbank	54_36p	-1	validated	silent	c.360	p.Q120	1.000	NULL	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1	-	no_errors
PFKM	5213	genome.wustl.edu	36	12	46825165	46825165	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	46825165	46825165	G	A	SNP	PFKM	NM_000289	human	genbank	54_36p	+1	validated	missense	c.2077	p.E693K	1.000	superfamily_Phosphofructokinase	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE	-	no_errors
ADCY5	111	genome.wustl.edu	36	3	124526965	124526965	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	124526965	124526965	C	A	SNP	ADCY5	NM_183357	human	genbank	54_36p	-1	validated	missense	c.1982	p.R661L	1.000	HMMPfam_DUF1053	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
SIGLEC11	114132	genome.wustl.edu	36	19	55147415	55147415	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	55147415	55147415	G	A	SNP	SIGLEC11	NM_052884	human	genbank	54_36p	-1	validated	missense	c.1664	p.A555V	0.538	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMPfam_I-set,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC	-	no_errors
PCNT	5116	genome.wustl.edu	36	21	46644004	46644004	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	46644004	46644004	G	T	SNP	PCNT	NM_006031	human	genbank	54_36p	+1	reviewed	missense	c.4657	p.A1553S	0.088	NULL	HMMPfam_PACT_coil_coil	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49565581	49565582	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	49565581	49565582	-	T	INS	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	frame_shift_ins	c.5463_5462	p.E1822fs	1.000:1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
TARS2	80222	genome.wustl.edu	36	1	148738086	148738086	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	148738086	148738086	G	A	SNP	TARS2	NM_025150	human	genbank	54_36p	+1	provisional	silent	c.1491	p.R497	0.976	superfamily_SSF55681,HMMPfam_tRNA-synt_2b	HMMPfam_TGS,superfamily_TGS-like,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,superfamily_SSF55681,HMMPfam_tRNA-synt_2b,superfamily_Anticodon_bd,HMMPfam_HGTP_anticodon	-	no_errors
APC2	10297	genome.wustl.edu	36	19	1411246	1411246	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1411246	1411246	C	T	SNP	APC2	NM_005883	human	genbank	54_36p	+1	validated	missense	c.1370	p.P457L	0.387	superfamily_ARM repeat,HMMSmart_SM00185	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,PatternScan_CYSTEINE_SWITCH,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic	-	no_errors
USH1C	10083	genome.wustl.edu	36	11	17487891	17487891	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	17487891	17487891	C	T	SNP	USH1C	NM_153676	human	genbank	54_36p	-1	reviewed	missense	c.1601	p.G534D	0.996	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors
MCOLN2	255231	genome.wustl.edu	36	1	85169707	85169707	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	85169707	85169707	A	T	SNP	MCOLN2	NM_153259	human	genbank	54_36p	-1	reviewed	missense	c.1468	p.F490I	1.000	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
HDLBP	3069	genome.wustl.edu	36	2	241830692	241830692	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	241830692	241830692	C	T	SNP	HDLBP	NM_005336	human	genbank	54_36p	-1	validated	silent	c.2025	p.L675	0.976	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1	-	no_errors
DAGLA	747	genome.wustl.edu	36	11	61260376	61260376	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	61260376	61260376	C	A	SNP	DAGLA	NM_006133	human	genbank	54_36p	+1	validated	missense	c.1349	p.S450Y	1.000	HMMPfam_Lipase_3,superfamily_SSF53474	HMMPfam_Lipase_3,PatternScan_LIPASE_SER,superfamily_SSF53474	-	no_errors
FREM1	158326	genome.wustl.edu	36	9	14737041	14737041	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	14737041	14737041	C	T	SNP	FREM1	NM_144966	human	genbank	54_36p	-1	validated	silent	c.6018	p.L2006	0.650	NULL	superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
CCDC136	64753	genome.wustl.edu	36	7	128239089	128239089	+	Splice_Site	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	128239089	128239089	G	A	SNP	CCDC136	NM_022742	human	genbank	54_36p	+1	validated	splice_site	c.2029-1	e13-1	0.028	-	-	-	no_errors
C20orf4	25980	genome.wustl.edu	36	20	34296062	34296062	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	34296062	34296062	C	T	SNP	C20orf4	NM_015511	human	genbank	54_36p	+1	predicted	silent	c.787	p.L263	0.995	HMMPfam_AAR2	HMMPfam_AAR2	-	no_errors
TAF8	129685	genome.wustl.edu	36	6	42142037	42142037	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	42142037	42142037	G	A	SNP	TAF8	NM_138572	human	genbank	54_36p	+1	reviewed	missense	c.499	p.E167K	0.999	HMMPfam_TAF8_C	HMMPfam_Bromo_TP,HMMSmart_SM00576,superfamily_Histone-fold,HMMPfam_TAF8_C	-	no_errors
LOC645978	645978	genome.wustl.edu	36	2	206983500	206983501	+	RNA	INS	-	-	CTGGTCTTG			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	206983500	206983501	-	CTGGTCTTG	INS	LOC645978	XR_017572	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.979:0.985	-	-	-	pseudogene
SLITRK3	22865	genome.wustl.edu	36	3	166389362	166389362	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	166389362	166389362	C	T	SNP	SLITRK3	NM_014926	human	genbank	54_36p	-1	validated	missense	c.1951	p.V651M	0.997	NULL	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMSmart_LRRNT,HMMPfam_LRR_1	-	no_errors
TULP1	7287	genome.wustl.edu	36	6	35575789	35575789	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	35575789	35575789	C	T	SNP	TULP1	NM_003322	human	genbank	54_36p	-1	reviewed	missense	c.1442	p.G481D	1.000	superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub,PatternScan_TUB_1	superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub,PatternScan_TUB_1,PatternScan_TUB_2	-	no_errors
MBTPS2	51360	genome.wustl.edu	36	X	21806113	21806113	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	21806113	21806113	T	A	SNP	MBTPS2	NM_015884	human	genbank	54_36p	+1	validated	missense	c.1003	p.C335S	1.000	HMMPfam_Peptidase_M50	HMMPfam_Peptidase_M50,PatternScan_ZINC_PROTEASE	-	no_errors
MASP2	10747	genome.wustl.edu	36	1	11029365	11029365	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	11029365	11029365	C	T	SNP	MASP2	NM_006610	human	genbank	54_36p	-1	reviewed	missense	c.247	p.A83T	0.958	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER	-	no_errors
SPARCL1	8404	genome.wustl.edu	36	4	88619720	88619720	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	88619720	88619720	C	T	SNP	SPARCL1	NM_004684	human	genbank	54_36p	-1	validated	missense	c.1852	p.A618T	0.976	HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand	HMMSmart_SM00274,HMMPfam_FOLN,PatternScan_OSTEONECTIN_1,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_Kazal-type serine protease inhibitors,HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand,PatternScan_OSTEONECTIN_2,PatternScan_EF_HAND_1	-	no_errors
FLOT2	2319	genome.wustl.edu	36	17	24234278	24234278	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	24234278	24234278	A	G	SNP	FLOT2	NM_004475	human	genbank	54_36p	-1	reviewed	missense	c.320	p.L107P	1.000	HMMPfam_Band_7,HMMSmart_PHB	HMMPfam_Band_7,HMMSmart_PHB	-	no_errors
ZAN	7455	genome.wustl.edu	36	7	100199648	100199648	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100199648	100199648	G	A	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	+1	known	missense	c.4160	p.G1387E	0.089	HMMPfam_C8	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00214,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_TIL_assoc,HMMPfam_EGF,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
MAOA	4128	genome.wustl.edu	36	X	43475904	43475904	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	43475904	43475904	C	T	SNP	MAOA	NM_000240	human	genbank	54_36p	+1	reviewed	missense	c.815	p.A272V	1.000	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
CPXM1	56265	genome.wustl.edu	36	20	2723207	2723207	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	2723207	2723207	C	T	SNP	CPXM1	NM_019609	human	genbank	54_36p	-1	reviewed	missense	c.1939	p.G647R	0.980	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain	-	no_errors
AACS	65985	genome.wustl.edu	36	12	124178748	124178748	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	124178748	124178748	G	A	SNP	AACS	NM_023928	human	genbank	54_36p	+1	validated	missense	c.1398	p.M466I	1.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	141529202	141529202	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	141529202	141529202	C	T	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.1505	p.R502H	1.000	HMMSmart_EGF,PatternScan_EGF_2,superfamily_SSF57196	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMPfam_NHL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
DNMT1	1786	genome.wustl.edu	36	19	10121556	10121556	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	10121556	10121556	T	C	SNP	DNMT1	NM_001379	human	genbank	54_36p	-1	reviewed	missense	c.2306	p.D769G	0.998	HMMPfam_BAH,HMMSmart_SM00439	HMMPfam_DMAP_binding,HMMPfam_zf-CXXC,HMMPfam_BAH,HMMSmart_SM00439,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2	-	no_errors
VWF	7450	genome.wustl.edu	36	12	5975634	5975634	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	5975634	5975634	C	G	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	missense	c.5858	p.S1953T	1.000	HMMPfam_VWD,HMMSmart_SM00216	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_VWA,HMMSmart_SM00327,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL,superfamily_vWA-like	-	no_errors
B4GALT2	8704	genome.wustl.edu	36	1	44228597	44228597	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	44228597	44228597	G	A	SNP	B4GALT2	NM_001005417	human	genbank	54_36p	+1	reviewed	missense	c.1009	p.D337N	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2	-	no_errors
DUSP19	142679	genome.wustl.edu	36	2	183660107	183660107	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	183660107	183660107	C	T	SNP	DUSP19	NM_080876	human	genbank	54_36p	+1	validated	missense	c.368	p.T123I	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMPfam_DSPc	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMPfam_DSPc	-	no_errors
ZDHHC9	51114	genome.wustl.edu	36	X	128803598	128803598	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	128803598	128803598	G	A	SNP	ZDHHC9	NM_001008222	human	genbank	54_36p	-1	validated	missense	c.5	p.S2F	1.000	NULL	HMMPfam_zf-DHHC	-	no_errors
ANKH	56172	genome.wustl.edu	36	5	14799070	14799070	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	14799070	14799070	G	A	SNP	ANKH	NM_054027	human	genbank	54_36p	-1	reviewed	missense	c.824	p.A275V	0.999	HMMPfam_ANKH	HMMPfam_ANKH	-	no_errors
MS4A1	931	genome.wustl.edu	36	11	59986532	59986532	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	59986532	59986532	C	G	SNP	MS4A1	NM_021950	human	genbank	54_36p	+1	reviewed	missense	c.109	p.L37V	0.000	NULL	HMMPfam_CD20	-	no_errors
KIAA0141	9812	genome.wustl.edu	36	5	141298453	141298453	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	141298453	141298453	T	C	SNP	KIAA0141	NM_014773	human	genbank	54_36p	+1	validated	missense	c.1493	p.I498T	0.000	NULL	superfamily_SSF81901,HMMSmart_SEL1,HMMPfam_Sel1	-	no_errors
IRX2	153572	genome.wustl.edu	36	5	2801674	2801674	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	2801674	2801674	T	A	SNP	IRX2	NM_033267	human	genbank	54_36p	-1	validated	missense	c.1148	p.Y383F	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,HMMSmart_IRO,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
MLLT4	4301	genome.wustl.edu	36	6	168090251	168090251	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	168090251	168090251	G	A	SNP	MLLT4	NM_001040001	human	genbank	54_36p	+1	validated	missense	c.3350	p.G1117D	1.000	superfamily_PDZ	HMMPfam_RA,HMMSmart_RA,superfamily_SSF54236,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_DIL,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors
C3orf20	84077	genome.wustl.edu	36	3	14699450	14699450	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	14699450	14699450	C	T	SNP	C3orf20	NM_032137	human	genbank	54_36p	+1	predicted	missense	c.226	p.P76S	0.000	NULL	NULL	-	no_errors
GPSM1	26086	genome.wustl.edu	36	9	138348747	138348747	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	138348747	138348747	C	A	SNP	GPSM1	NM_015597	human	genbank	54_36p	+1	validated	missense	c.22	p.L8M	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2,HMMPfam_GoLoco,HMMSmart_SM00390	-	no_errors
HLA-A	3105	genome.wustl.edu	36	6	30020131	30020131	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30020131	30020131	C	T	SNP	HLA-A	NM_002116	human	genbank	54_36p	+1	reviewed	silent	c.873	p.P291	0.039	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
USP34	9736	genome.wustl.edu	36	2	61451038	61451038	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	61451038	61451038	G	A	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	silent	c.1173	p.C391	1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
EXOG	9941	genome.wustl.edu	36	3	38523359	38523359	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	38523359	38523359	T	C	SNP	EXOG	NM_005107	human	genbank	54_36p	+1	reviewed	missense	c.541	p.Y181H	1.000	superfamily_His-Me finger endonucleases,HMMPfam_Endonuclease_NS,HMMSmart_SM00477	superfamily_His-Me finger endonucleases,HMMPfam_Endonuclease_NS,HMMSmart_SM00477	-	no_errors
FARSA	2193	genome.wustl.edu	36	19	12900632	12900632	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12900632	12900632	C	T	SNP	FARSA	NM_004461	human	genbank	54_36p	-1	validated	missense	c.533	p.G178D	1.000	NULL	"superfamily_""Winged helix"" DNA-binding domain,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2d"	-	no_errors
GOLGA1	2800	genome.wustl.edu	36	9	126691540	126691540	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	126691540	126691540	C	T	SNP	GOLGA1	NM_002077	human	genbank	54_36p	-1	reviewed	missense	c.1594	p.E532K	0.784	NULL	HMMPfam_GRIP,HMMSmart_SM00755,superfamily_Prefoldin	-	no_errors
MBD1	4152	genome.wustl.edu	36	18	46053770	46053770	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	46053770	46053770	G	A	SNP	MBD1	NM_015846	human	genbank	54_36p	-1	reviewed	nonsense	c.1516	p.Q506*	0.782	NULL	HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391,HMMPfam_zf-CXXC	-	no_errors
SENP6	26054	genome.wustl.edu	36	6	76400024	76400024	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	76400024	76400024	G	A	SNP	SENP6	NM_015571	human	genbank	54_36p	+1	validated	missense	c.215	p.R72H	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48	-	no_errors
DOCK1	1793	genome.wustl.edu	36	10	129127431	129127431	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	129127431	129127431	C	T	SNP	DOCK1	ENST00000398025	human	ensembl	54_36p	+1	known	silent	c.5346	p.P1782	0.008	NULL	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,superfamily_Cytochrome_c	-	no_errors
MKNK1	8569	genome.wustl.edu	36	1	46796880	46796880	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	46796880	46796880	G	A	SNP	MKNK1	NM_003684	human	genbank	54_36p	-1	validated	missense	c.1352	p.A451V	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TUBA1B	10376	genome.wustl.edu	36	12	47808127	47808127	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47808127	47808127	T	A	SNP	TUBA1B	NM_006082	human	genbank	54_36p	-1	validated	missense	c.1237	p.M413L	0.998	superfamily_Tubulin C-terminal domain-like	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226572060	226572060	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	226572060	226572060	C	T	SNP	OBSCN	NM_001098623	human	genbank	54_36p	+1	reviewed	nonsense	c.13834	p.Q4612*	1.000	superfamily_Fibronectin type III	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
uc010eei.1	0	genome.wustl.edu	36	19	40912793	40912793	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	40912793	40912793	G	A	SNP	uc010eei.1	ENST00000222270	human	ensembl	54_36p	+1	known	missense	c.5003	p.R1668Q	0.998	HMMSmart_SM00249	HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
FADD	8772	genome.wustl.edu	36	11	69727405	69727405	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	69727405	69727405	C	T	SNP	FADD	NM_003824	human	genbank	54_36p	+1	reviewed	silent	c.192	p.R64	0.996	superfamily_DEATH_like,HMMSmart_DED,HMMPfam_DED	superfamily_DEATH_like,HMMSmart_DED,HMMPfam_DED,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
OR51M1	390059	genome.wustl.edu	36	11	5367269	5367269	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	5367269	5367269	C	A	SNP	OR51M1	NM_001004756	human	genbank	54_36p	+1	provisional	missense	c.65	p.P22H	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
TCF7	6932	genome.wustl.edu	36	5	133507222	133507222	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	133507222	133507222	C	T	SNP	TCF7	NM_003202	human	genbank	54_36p	+1	validated	missense	c.1067	p.S356F	0.990	NULL	HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
MLL2	8085	genome.wustl.edu	36	12	47720070	47720070	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47720070	47720070	T	G	SNP	MLL2	NM_003482	human	genbank	54_36p	-1	validated	missense	c.7750	p.T2584P	0.181	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
CDK3	1018	genome.wustl.edu	36	17	71510969	71510969	+	Silent	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71510969	71510969	G	T	SNP	CDK3	NM_001258	human	genbank	54_36p	+1	validated	silent	c.687	p.G229	0.991	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
FCRL5	83416	genome.wustl.edu	36	1	155757555	155757555	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	155757555	155757555	C	T	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	silent	c.2391	p.S797	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
SLX4	84464	genome.wustl.edu	36	16	3579509	3579509	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	3579509	3579509	C	T	SNP	BTBD12	NM_032444	human	genbank	54_36p	-1	provisional	silent	c.4131	p.S1377	0.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	-	no_errors
MTMR1	8776	genome.wustl.edu	36	X	149651794	149651794	+	Silent	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	149651794	149651794	T	C	SNP	MTMR1	NM_003828	human	genbank	54_36p	+1	reviewed	silent	c.990	p.A330	0.977	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II	HMMSmart_SM00404,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
LOC648603	648603	genome.wustl.edu	36	X	48519829	48519829	+	RNA	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	48519829	48519829	C	T	SNP	LOC648603	XR_038238	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.996	-	-	-	pseudogene
PLCG2	5336	genome.wustl.edu	36	16	80527353	80527353	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	80527353	80527353	T	A	SNP	PLCG2	NM_002661	human	genbank	54_36p	+1	validated	missense	c.2921	p.L974H	0.998	superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc	superfamily_SSF50729,HMMSmart_PH,HMMPfam_PH,superfamily_SSF47473,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
ANKRD13C	81573	genome.wustl.edu	36	1	70592578	70592578	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	70592578	70592578	G	A	SNP	ANKRD13C	NM_030816	human	genbank	54_36p	-1	validated	silent	c.102	p.L34	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
BSN	8927	genome.wustl.edu	36	3	49674081	49674081	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49674081	49674081	A	G	SNP	BSN	NM_003458	human	genbank	54_36p	+1	validated	missense	c.9799	p.K3267E	0.995	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
VPS26B	112936	genome.wustl.edu	36	11	133620600	133620600	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	133620600	133620600	A	T	SNP	VPS26B	NM_052875	human	genbank	54_36p	+1	validated	missense	c.917	p.Q306L	1.000	NULL	HMMPfam_Vps26	-	no_errors
CACNB3	784	genome.wustl.edu	36	12	47503412	47503412	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47503412	47503412	A	T	SNP	CACNB3	NM_000725	human	genbank	54_36p	+1	validated	missense	c.64	p.T22S	1.000	NULL	superfamily_SH3-domain,HMMPfam_Ca_channel_B,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072	-	no_errors
ZNF33B	7582	genome.wustl.edu	36	10	42447848	42447848	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	42447848	42447848	C	T	SNP	ZNF33B	NM_006955	human	genbank	54_36p	-1	provisional	missense	c.55	p.V19M	0.999	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PLD5	200150	genome.wustl.edu	36	1	240495340	240495340	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	240495340	240495340	T	A	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.253	p.T85S	0.899	superfamily_SSF56024	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope	-	no_errors
C5AR1	728	genome.wustl.edu	36	19	52515257	52515257	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	52515257	52515257	C	T	SNP	C5AR1	NM_001736	human	genbank	54_36p	+1	validated	missense	c.383	p.A128V	0.178	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC727770	727770	genome.wustl.edu	36	1	141766541	141766541	+	RNA	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	141766541	141766541	A	G	SNP	LOC727770	XR_037208	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.946	-	-	-	pseudogene
ZAP70	7535	genome.wustl.edu	36	2	97715828	97715828	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	97715828	97715828	G	A	SNP	ZAP70	NM_001079	human	genbank	54_36p	+1	reviewed	missense	c.614	p.G205E	1.000	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
SPEG	10290	genome.wustl.edu	36	2	220040201	220040201	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	220040201	220040201	C	T	SNP	SPEG	NM_005876	human	genbank	54_36p	+1	validated	silent	c.2943	p.A981	1.000	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00219	-	no_errors
TRPC7	57113	genome.wustl.edu	36	5	135589619	135589619	+	Splice_Site	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	135589619	135589619	A	T	SNP	TRPC7	ENST00000265193	human	ensembl	54_36p	-1	known	splice_site	c.2259+2	e8+2	1.000	-	-	-	no_errors
IDE	3416	genome.wustl.edu	36	10	94229058	94229058	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	94229058	94229058	C	T	SNP	IDE	NM_004969	human	genbank	54_36p	-1	validated	missense	c.1840	p.A614T	1.000	superfamily_Metalloenz_metal-bd	superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16,PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C	-	no_errors
KCNH3	23416	genome.wustl.edu	36	12	48230279	48230279	+	Silent	SNP	C	C	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	48230279	48230279	C	G	SNP	KCNH3	NM_012284	human	genbank	54_36p	+1	validated	silent	c.1818	p.G606	0.999	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS,HMMSmart_PAC,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding	-	no_errors
ADCY2	108	genome.wustl.edu	36	5	7879920	7879920	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	7879920	7879920	T	A	SNP	ADCY2	NM_020546	human	genbank	54_36p	+1	reviewed	missense	c.3212	p.L1071Q	1.000	HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	7647843	7647843	+	Silent	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	7647843	7647843	A	G	SNP	CAMTA1	NM_015215	human	genbank	54_36p	+1	validated	silent	c.2649	p.P883	0.394	HMMPfam_TIG,superfamily_E set domains	HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FLYWCH1	84256	genome.wustl.edu	36	16	2923467	2923467	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	2923467	2923467	C	T	SNP	FLYWCH1	NM_032296	human	genbank	54_36p	+1	validated	missense	c.1129	p.P377S	0.009	NULL	HMMPfam_FLYWCH	-	no_errors
LOC100132920	100132920	genome.wustl.edu	36	20	62393611	62393611	+	RNA	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	62393611	62393611	C	T	SNP	LOC100132920	XR_037691	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.221	-	-	-	pseudogene
CCDC65	85478	genome.wustl.edu	36	12	47601292	47601292	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47601292	47601292	C	T	SNP	CCDC65	NM_033124	human	genbank	54_36p	+1	validated	silent	c.1254	p.L418	0.055	NULL	NULL	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122863982	122863982	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	122863982	122863982	C	T	SNP	DNAH10	NM_207437	human	genbank	54_36p	+1	validated	missense	c.2563	p.R855C	0.078	NULL	HMMPfam_DHC_N1	-	no_errors
LOC255374	255374	genome.wustl.edu	36	7	99563548	99563548	+	Silent	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	99563548	99563548	G	T	SNP	LOC255374	NM_203397	human	genbank	54_36p	+1	validated	silent	c.594	p.G198	0.234	HMMPfam_Lactamase_B,superfamily_SSF56281	HMMPfam_Lactamase_B,superfamily_SSF56281	-	no_errors
ENO2	2026	genome.wustl.edu	36	12	6896150	6896150	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	6896150	6896150	G	C	SNP	ENO2	NM_001975	human	genbank	54_36p	+1	reviewed	missense	c.236	p.S79T	0.859	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like,superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C,PatternScan_ENOLASE	-	no_errors
SIX6	4990	genome.wustl.edu	36	14	60045915	60045915	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	60045915	60045915	G	A	SNP	SIX6	NM_007374	human	genbank	54_36p	+1	reviewed	missense	c.46	p.G16R	1.000	NULL	PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
GPR161	23432	genome.wustl.edu	36	1	166340527	166340527	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	166340527	166340527	G	A	SNP	GPR161	NM_153832	human	genbank	54_36p	-1	provisional	silent	c.186	p.S62	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
KATNB1	10300	genome.wustl.edu	36	16	56347504	56347504	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	56347504	56347504	C	T	SNP	KATNB1	ENST00000394326	human	ensembl	54_36p	+1	known	silent	c.1032	p.C344	0.011	NULL	NULL	-	no_start_codon
LOC730153	730153	genome.wustl.edu	36	16	28970946	28970946	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	28970946	28970946	C	T	SNP	LOC730153	XM_001717676	human	genbank	54_36p	+1	model	missense	c.566	p.P189L	0.000	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
TTC24	164118	genome.wustl.edu	36	1	154817807	154817807	+	Silent	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154817807	154817807	G	T	SNP	TTC24	ENST00000368237	human	ensembl	54_36p	+1	known	silent	c.27	p.V9	0.000	superfamily_SSF48452	superfamily_SSF48452,HMMSmart_TPR,HMMPfam_TPR_4,HMMPfam_TPR_1	-	no_errors
HCFC1	3054	genome.wustl.edu	36	X	152883316	152883316	+	Silent	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	152883316	152883316	T	C	SNP	HCFC1	NM_005334	human	genbank	54_36p	-1	reviewed	silent	c.249	p.A83	0.999	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
KIF14	9928	genome.wustl.edu	36	1	198790300	198790300	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	198790300	198790300	T	A	SNP	KIF14	NM_014875	human	genbank	54_36p	-1	validated	missense	c.4486	p.M1496L	0.000	NULL	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	-	no_errors
HS6ST1	9394	genome.wustl.edu	36	2	128742889	128742889	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	128742889	128742889	G	A	SNP	HS6ST1	NM_004807	human	genbank	54_36p	-1	reviewed	nonsense	c.553	p.R185*	1.000	HMMPfam_HS6ST	HMMPfam_HS6ST	-	no_errors
RASGRP2	10235	genome.wustl.edu	36	11	64263798	64263798	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64263798	64263798	C	G	SNP	RASGRP2	NM_001098670	human	genbank	54_36p	-1	reviewed	missense	c.582	p.E194D	1.000	superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147	HMMSmart_SM00229,HMMPfam_RasGEF_N,superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	-	no_errors
DOPEY2	9980	genome.wustl.edu	36	21	36540224	36540224	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	36540224	36540224	T	C	SNP	DOPEY2	NM_005128	human	genbank	54_36p	+1	validated	missense	c.4076	p.L1359P	1.000	NULL	HMMPfam_Dopey_N	-	no_errors
PPP2R3B	28227	genome.wustl.edu	36	X	215231	215231	+	Silent	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	215231	215231	A	G	SNP	PPP2R3B	NM_013239	human	genbank	54_36p	-1	reviewed	silent	c.1599	p.P533	0.938	NULL	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors
C11orf82	220042	genome.wustl.edu	36	11	82317525	82317525	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	82317525	82317525	A	G	SNP	C11orf82	NM_145018	human	genbank	54_36p	+1	validated	missense	c.172	p.K58E	0.880	superfamily_Nucleic acid-binding proteins	superfamily_Nucleic acid-binding proteins	-	no_errors
LENG1	79165	genome.wustl.edu	36	19	59352569	59352569	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59352569	59352569	G	A	SNP	LENG1	NM_024316	human	genbank	54_36p	-1	provisional	nonsense	c.319	p.Q107*	1.000	NULL	NULL	-	no_errors
TAGLN	6876	genome.wustl.edu	36	11	116578927	116578927	+	Splice_Site	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	116578927	116578927	G	A	SNP	TAGLN	NM_001001522	human	genbank	54_36p	+1	reviewed	splice_site	c.1-1	e1-1	0.026	-	-	-	no_errors
TJAP1	93643	genome.wustl.edu	36	6	43579208	43579208	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43579208	43579208	A	T	SNP	TJAP1	NM_080604	human	genbank	54_36p	+1	reviewed	missense	c.449	p.K150M	1.000	NULL	NULL	-	no_errors
C1orf74	148304	genome.wustl.edu	36	1	208023335	208023335	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	208023335	208023335	C	T	SNP	C1orf74	NM_152485	human	genbank	54_36p	-1	predicted	missense	c.268	p.E90K	0.197	PatternScan_TONB_DEPENDENT_REC_1	PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
RPS6KA1	6195	genome.wustl.edu	36	1	26754272	26754272	+	Missense_Mutation	SNP	G	G	T	rs71820465		TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	26754272	26754272	G	T	SNP	RPS6KA1	NM_001006665	human	genbank	54_36p	+1	reviewed	missense	c.827	p.R276L	1.000	superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_S_TKc	superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
SYTL2	54843	genome.wustl.edu	36	11	85099918	85099918	+	Silent	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	85099918	85099918	A	G	SNP	SYTL2	NM_206927	human	genbank	54_36p	-1	reviewed	silent	c.2730	p.D910	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,PatternScan_PHOSPHOPANTETHEINE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
CEP192	55125	genome.wustl.edu	36	18	13039366	13039366	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	13039366	13039366	G	A	SNP	CEP192	NM_032142	human	genbank	54_36p	+1	validated	missense	c.788	p.R263K	0.001	NULL	NULL	-	no_errors
WDR82	80335	genome.wustl.edu	36	3	52268828	52268828	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	52268828	52268828	C	T	SNP	WDR82	NM_025222	human	genbank	54_36p	-1	validated	missense	c.644	p.G215D	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
LOC644464	644464	genome.wustl.edu	36	X	44485538	44485538	+	RNA	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	44485538	44485538	C	T	SNP	LOC644464	XR_016829	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
OAS2	4939	genome.wustl.edu	36	12	111929971	111929971	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	111929971	111929971	C	T	SNP	OAS2	NM_016817	human	genbank	54_36p	+1	reviewed	nonsense	c.1735	p.Q579*	0.644	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain	superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2,HMMPfam_NTP_transf_2	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
SPG7	6687	genome.wustl.edu	36	16	88126421	88126421	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	88126421	88126421	G	A	SNP	SPG7	NM_003119	human	genbank	54_36p	+1	reviewed	silent	c.1200	p.R400	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	HMMPfam_FtsH_ext,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,HMMPfam_Peptidase_M41	-	no_errors
LOC389000	389000	genome.wustl.edu	36	2	91440296	91440296	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91440296	91440296	A	G	SNP	LOC389000	XM_371534	human	genbank	54_36p	-1	model	missense	c.1130	p.L377P	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	pseudogene
ZNF229	7772	genome.wustl.edu	36	19	49626229	49626229	+	Silent	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	49626229	49626229	T	C	SNP	ZNF229	NM_014518	human	genbank	54_36p	-1	validated	silent	c.567	p.A189	0.000	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
NBPF1	55672	genome.wustl.edu	36	1	16788084	16788084	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16788084	16788084	G	A	SNP	NBPF1	NM_017940	human	genbank	54_36p	-1	predicted	missense	c.340	p.R114W	0.003	NULL	HMMPfam_DUF1220	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
OR10G3	26533	genome.wustl.edu	36	14	21108441	21108441	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	21108441	21108441	G	A	SNP	OR10G3	NM_001005465	human	genbank	54_36p	-1	validated	missense	c.275	p.P92L	0.927	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
HEXB	3074	genome.wustl.edu	36	5	74036838	74036838	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	74036838	74036838	G	A	SNP	HEXB	NM_000521	human	genbank	54_36p	+1	reviewed	nonsense	c.708	p.W236*	1.000	HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases	superfamily_beta-N-acetylhexosaminidase-like domain,HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases	-	no_errors
NCAN	1463	genome.wustl.edu	36	19	19199932	19199932	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	19199932	19199932	C	T	SNP	NCAN	NM_004386	human	genbank	54_36p	+1	validated	missense	c.2503	p.P835S	0.000	NULL	superfamily_SSF48726,HMMSmart_IG,superfamily_C-type_lectin_fold,HMMSmart_LINK,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_CLECT,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors
PRX	57716	genome.wustl.edu	36	19	45593548	45593548	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	45593548	45593548	A	G	SNP	PRX	NM_181882	human	genbank	54_36p	-1	reviewed	missense	c.2551	p.S851P	0.000	NULL	HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228	-	no_errors
TM7SF3	51768	genome.wustl.edu	36	12	27039579	27039579	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	27039579	27039579	C	A	SNP	TM7SF3	NM_016551	human	genbank	54_36p	-1	validated	missense	c.548	p.G183V	0.001	NULL	NULL	-	no_errors
KLB	152831	genome.wustl.edu	36	4	39085513	39085513	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	39085513	39085513	G	A	SNP	KLB	NM_175737	human	genbank	54_36p	+1	validated	silent	c.549	p.V183	0.002	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2,HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	-	no_errors
CAMK4	814	genome.wustl.edu	36	5	110812771	110812771	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	110812771	110812771	A	G	SNP	CAMK4	NM_001744	human	genbank	54_36p	+1	reviewed	missense	c.596	p.K199R	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
DCTN1	1639	genome.wustl.edu	36	2	74447441	74447441	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	74447441	74447441	C	T	SNP	DCTN1	NM_004082	human	genbank	54_36p	-1	reviewed	missense	c.2443	p.A815T	0.986	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Spectrin repeat	-	no_errors
KIAA0947	23379	genome.wustl.edu	36	5	5542285	5542285	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	5542285	5542285	G	A	SNP	KIAA0947	NM_015325	human	genbank	54_36p	+1	validated	missense	c.6643	p.A2215T	0.918	NULL	NULL	-	no_errors
PCDHB6	56130	genome.wustl.edu	36	5	140510277	140510277	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140510277	140510277	A	-	DEL	PCDHB6	NM_018939	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.255	p.N86fs	0.064	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PTPN23	25930	genome.wustl.edu	36	3	47423631	47423631	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	47423631	47423631	A	G	SNP	PTPN23	NM_015466	human	genbank	54_36p	+1	validated	missense	c.815	p.Y272C	1.000	HMMPfam_BRO1	HMMPfam_BRO1,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
C17orf85	55421	genome.wustl.edu	36	17	3664491	3664491	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	3664491	3664491	G	A	SNP	C17orf85	NM_018553	human	genbank	54_36p	-1	provisional	missense	c.661	p.P221S	1.000	NULL	NULL	-	no_errors
RABL5	64792	genome.wustl.edu	36	7	100745162	100745162	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100745162	100745162	G	A	SNP	RABL5	NM_022777	human	genbank	54_36p	-1	validated	silent	c.531	p.D177	0.978	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
REEP2	51308	genome.wustl.edu	36	5	137808935	137808935	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	137808935	137808935	C	T	SNP	REEP2	NM_016606	human	genbank	54_36p	+1	provisional	silent	c.531	p.G177	0.000	NULL	HMMPfam_TB2_DP1_HVA22	-	no_errors
CSGALNACT1	55790	genome.wustl.edu	36	8	19407478	19407478	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	19407478	19407478	T	C	SNP	CSGALNACT1	NM_018371	human	genbank	54_36p	-1	validated	missense	c.148	p.S50G	0.296	HMMPfam_CHGN	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors
KIAA1199	57214	genome.wustl.edu	36	15	78963570	78963570	+	Splice_Site	SNP	G	G	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	78963570	78963570	G	T	SNP	KIAA1199	NM_018689	human	genbank	54_36p	+1	validated	splice_site	c.618-1	e5-1	0.998	-	-	-	no_errors
C3orf39	84892	genome.wustl.edu	36	3	43097387	43097387	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	43097387	43097387	G	A	SNP	C3orf39	NM_032806	human	genbank	54_36p	-1	provisional	nonsense	c.541	p.Q181*	1.000	NULL	superfamily_Fibronectin type III	-	no_errors
CACHD1	57685	genome.wustl.edu	36	1	64904339	64904339	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	64904339	64904339	C	T	SNP	CACHD1	NM_020925	human	genbank	54_36p	+1	validated	missense	c.2135	p.A712V	0.999	NULL	"HMMPfam_VWA_N,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Cache_1,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ULK4	54986	genome.wustl.edu	36	3	41948422	41948422	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	41948422	41948422	G	A	SNP	ULK4	NM_017886	human	genbank	54_36p	-1	validated	silent	c.459	p.F153	1.000	superfamily_Kinase_like,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,superfamily_ARM-type_fold	-	no_errors
LILRA3	11026	genome.wustl.edu	36	19	59494007	59494007	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59494007	59494007	C	T	SNP	LILRA3	NM_006865	human	genbank	54_36p	-1	provisional	silent	c.993	p.R331	0.002	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
GIMAP5	55340	genome.wustl.edu	36	7	150070925	150070925	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	150070925	150070925	G	A	SNP	GIMAP5	NM_018384	human	genbank	54_36p	+1	reviewed	silent	c.765	p.K255	0.196	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	-	no_errors
MKL1	57591	genome.wustl.edu	36	22	39155469	39155469	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	39155469	39155469	C	A	SNP	MKL1	ENST00000402630	human	ensembl	54_36p	-1	known	missense	c.388	p.A130S	0.002	NULL	HMMSmart_RPEL	-	no_errors
RASGEF1B	153020	genome.wustl.edu	36	4	82582538	82582538	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	82582538	82582538	G	A	SNP	RASGEF1B	NM_152545	human	genbank	54_36p	-1	provisional	silent	c.945	p.S315	1.000	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
CBLC	23624	genome.wustl.edu	36	19	49987575	49987575	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	49987575	49987575	G	A	SNP	CBLC	NM_012116	human	genbank	54_36p	+1	validated	silent	c.1101	p.G367	0.996	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	HMMSmart_SM00184,HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,HMMPfam_Cbl_N3,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_EF-hand,superfamily_SH2 domain,superfamily_RING/U-box	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226572056	226572056	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	226572056	226572056	G	A	SNP	OBSCN	NM_001098623	human	genbank	54_36p	+1	reviewed	silent	c.13830	p.L4610	1.000	superfamily_Fibronectin type III	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
IFI35	3430	genome.wustl.edu	36	17	38418702	38418703	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	38418702	38418703	-	G	INS	IFI35	NM_005533	human	genbank	54_36p	+1	validated	frame_shift_ins	c.233_234	p.S80fs	0.721:0.755	HMMPfam_IFP_35_N	HMMPfam_IFP_35_N,HMMPfam_NID	-	no_errors
GPR101	83550	genome.wustl.edu	36	X	135941136	135941136	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	135941136	135941136	T	A	SNP	GPR101	NM_054021	human	genbank	54_36p	-1	provisional	missense	c.364	p.I122F	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MAPKBP1	23005	genome.wustl.edu	36	15	39901090	39901090	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	39901090	39901090	G	A	SNP	MAPKBP1	NM_014994	human	genbank	54_36p	+1	validated	missense	c.2735	p.R912Q	0.009	NULL	HMMSmart_SM00320,PatternScan_PTS_HPR_SER,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
MAP3K9	4293	genome.wustl.edu	36	14	70274840	70274840	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	70274840	70274840	C	A	SNP	MAP3K9	NM_033141	human	genbank	54_36p	-1	validated	missense	c.1719	p.W573C	1.000	NULL	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Kinase_like,HMMSmart_TyrKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DYNC1H1	1778	genome.wustl.edu	36	14	101585855	101585855	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	101585855	101585855	G	A	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	+1	reviewed	missense	c.13567	p.A4523T	0.999	HMMPfam_Dynein_heavy	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540	-	no_errors
CEACAM21	90273	genome.wustl.edu	36	19	46783685	46783685	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	46783685	46783685	C	A	SNP	CEACAM21	NM_001098506	human	genbank	54_36p	+1	validated	missense	c.847	p.P283T	0.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
