Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ZMYND11	10771	genome.wustl.edu	36	10	283375	283375	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	283375	283375	G	T	SNP	ZMYND11	NM_006624	human	genbank	54_36p	+1	reviewed	missense	c.1076	p.R359L	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,PatternScan_ZF_PHD_1,HMMSmart_RING,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
ADAMTS19	171019	genome.wustl.edu	36	5	128891342	128891342	+	Silent	SNP	A	A	T			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	128891342	128891342	A	T	SNP	ADAMTS19	NM_133638	human	genbank	54_36p	+1	reviewed	silent	c.1071	p.V357	0.988	"superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
ALDH7A1	501	genome.wustl.edu	36	5	125946531	125946531	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	125946531	125946531	C	A	SNP	ALDH7A1	NM_001182	human	genbank	54_36p	-1	reviewed	missense	c.344	p.G115V	1.000	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh	PatternScan_ALDEHYDE_DEHYDR_CYS,superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
LOC100132306	100132306	genome.wustl.edu	36	1	147914910	147914920	+	RNA	DEL	AGTTCTAAACA	AGTTCTAAACA	-			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	AGTTCTAAACA	AGTTCTAAACA			AGTTCTAAACA	AGTTCTAAACA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	147914910	147914920	AGTTCTAAACA	-	DEL	LOC100132306	XR_037921	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000	-	-	-	pseudogene
ARL6	84100	genome.wustl.edu	36	3	98982147	98982147	+	Splice_Site	SNP	A	A	T			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	98982147	98982147	A	T	SNP	ARL6	NM_032146	human	genbank	54_36p	+1	reviewed	splice_site	c.186-2	e3-2	0.998	-	-	-	no_errors
MPRIP	23164	genome.wustl.edu	36	17	16980287	16980289	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	CAG	CAG			CAG	CAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	16980287	16980289	CAG	-	DEL	MPRIP	NM_015134	human	genbank	54_36p	+1	validated	in_frame_del	c.534_536	p.S182in_frame_del	0.997:0.998:0.998	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
WHAMMP3	339005	genome.wustl.edu	36	15	20751735	20751735	+	Silent	SNP	T	T	C			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	20751735	20751735	T	C	SNP	WHAMML1	ENST00000400153	human	ensembl	54_36p	-1	known	silent	c.228	p.Q76	1.000	NULL	NULL	-	no_errors
EPPK1	83481	genome.wustl.edu	36	8	145012694	145012694	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	145012694	145012694	C	T	SNP	EPPK1	NM_031308	human	genbank	54_36p	-1	provisional	missense	c.6641	p.R2214H	0.011	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	no_stop_codon:bad_bp_length_for_coding_region
ZBTB47	92999	genome.wustl.edu	36	3	42675841	42675841	+	Silent	SNP	G	G	A			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	42675841	42675841	G	A	SNP	ZBTB47	ENST00000232974	human	ensembl	54_36p	+1	known	silent	c.990	p.E330	0.905	superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ENSG00000215615	0	genome.wustl.edu	36	NT_113889	40716	40716	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2834-03B-01W-0728-08	TCGA-AB-2834-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113889	40716	40716	C	T	SNP	ENSG00000215615	ENST00000400681	human	ensembl	54_36p	-1	known	missense	c.214	p.V72M	NULL	HMMPfam_Tektin	HMMPfam_Tektin	-	no_stop_codon
